Query psy447
Match_columns 417
No_of_seqs 233 out of 849
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 17:52:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy447.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/447hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vtn_C HNF-3/FORK head DNA-rec 100.0 3.5E-44 1.2E-48 303.2 6.0 101 121-221 1-101 (102)
2 2hdc_A Protein (transcription 100.0 2.3E-43 7.8E-48 295.9 3.0 97 122-218 1-97 (97)
3 1kq8_A HFH-1, hepatocyte nucle 100.0 4.4E-43 1.5E-47 295.6 4.6 98 122-219 1-99 (100)
4 2hfh_A Genesis, HFH-2; HNF-3 h 100.0 6.7E-43 2.3E-47 298.7 5.0 101 122-222 2-102 (109)
5 2c6y_A Forkhead box protein K2 100.0 3.5E-42 1.2E-46 295.0 2.7 99 120-218 13-111 (111)
6 1e17_A AFX; DNA binding domain 100.0 2E-38 6.7E-43 284.0 4.6 110 111-228 31-145 (150)
7 3coa_C Forkhead box protein O1 100.0 4.3E-38 1.5E-42 271.9 5.3 82 121-204 9-95 (117)
8 3l2c_A Forkhead box protein O4 100.0 9.7E-38 3.3E-42 267.0 5.1 83 121-205 22-109 (110)
9 3bpy_A FORK head domain, forkh 100.0 4.5E-37 1.5E-41 252.2 5.1 78 121-200 3-85 (85)
10 2a07_F Forkhead box protein P2 100.0 8.3E-37 2.8E-41 254.6 1.0 77 122-203 2-78 (93)
11 3g73_A Forkhead box protein M1 100.0 7.1E-35 2.4E-39 259.0 4.7 97 120-219 15-113 (142)
12 1uhm_A Histone H1, histone HHO 79.8 1.6 5.4E-05 34.5 3.7 33 127-159 6-39 (78)
13 1uss_A Histone H1; DNA binding 79.7 2 6.7E-05 34.8 4.3 33 127-159 9-42 (88)
14 1hst_A Histone H5; chromosomal 76.1 2.5 8.5E-05 34.5 4.0 32 127-158 9-41 (90)
15 2rqp_A Heterochromatin protein 73.3 1.6 5.6E-05 35.1 2.2 34 126-159 10-44 (88)
16 1ust_A Histone H1; DNA binding 72.9 2.7 9.2E-05 34.5 3.4 33 127-159 9-42 (93)
17 2lso_A Histone H1X; structural 60.7 2.4 8.3E-05 34.0 0.0 33 126-158 6-39 (83)
18 3oti_A CALG3; calicheamicin, T 41.2 3.3 0.00011 39.0 -1.6 10 306-315 2-11 (398)
19 4aw0_A HPDK1, 3-phosphoinositi 36.0 8.8 0.0003 37.0 0.5 39 128-169 261-301 (311)
20 3abq_B Ethanolamine ammonia-ly 29.8 11 0.00038 37.3 0.0 21 304-324 2-22 (306)
21 3hyh_A Carbon catabolite-derep 27.2 29 0.00098 32.6 2.3 33 128-160 239-273 (275)
22 3nk4_C ZONA pellucida 3; ferti 27.2 16 0.00056 24.3 0.4 13 329-341 17-29 (30)
23 4gfq_A Ribosome-recycling fact 26.3 17 0.00058 34.1 0.6 18 316-334 45-62 (209)
24 1ghc_A GH1; chromosomal protei 25.6 8.7 0.0003 29.7 -1.3 30 127-156 5-35 (75)
25 2j23_A Thioredoxin; immune pro 25.3 26 0.00088 27.5 1.4 16 316-333 23-38 (121)
26 1vf6_C Maguk P55 subfamily mem 24.2 23 0.00079 28.2 0.9 17 307-323 4-20 (72)
27 2c0d_A Thioredoxin peroxidase 24.0 16 0.00056 32.8 0.0 17 315-331 15-33 (221)
28 1v58_A Thiol:disulfide interch 23.3 18 0.00061 32.9 0.1 13 301-313 229-241 (241)
29 3qv0_A Mitochondrial acidic pr 23.2 25 0.00085 33.2 1.1 17 308-324 3-19 (227)
30 3uzp_A CKI-delta, CKID, casein 22.1 75 0.0026 27.9 3.9 33 126-158 248-280 (296)
31 2pvf_A Fibroblast growth facto 20.9 21 0.0007 32.7 0.0 14 307-320 4-17 (334)
32 4hgt_A Casein kinase I isoform 20.7 76 0.0026 27.8 3.7 34 126-159 248-281 (296)
33 3tjj_A Peroxiredoxin-4; thiore 20.2 22 0.00074 33.0 0.0 23 307-329 4-35 (254)
No 1
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=100.00 E-value=3.5e-44 Score=303.19 Aligned_cols=101 Identities=87% Similarity=1.466 Sum_probs=98.3
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCccccccccccccccccccccccccccccCCCCCCCCccceEec
Q psy447 121 HAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLH 200 (417)
Q Consensus 121 ~~KPPySYa~LI~~AI~sSP~krLTLsEIY~wI~~~fPYyr~~~~gWKNSIRHNLSLNkcFvKVpR~~~~pGKGs~WtLd 200 (417)
+.||||||++||++||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|..+++|||+||+|+
T Consensus 1 h~KPp~SY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~l~ 80 (102)
T 1vtn_C 1 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALH 80 (102)
T ss_dssp CCCCSSCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEEEC
T ss_pred CcCcCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhhccceEecCCCCCCCCCcceEEEC
Confidence 58999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred CCCcccccccchhhccccccc
Q psy447 201 KDSGNMFENGCYLRRQKRFKD 221 (417)
Q Consensus 201 Pe~~~~fenG~~~rRrkr~kr 221 (417)
|+++++|++|.++|||+|++.
T Consensus 81 p~~~~~f~~g~~~rr~~~~~~ 101 (102)
T 1vtn_C 81 PSSGNMFENGCYLRRQKRFKL 101 (102)
T ss_dssp GGGCSTTCSSCSSSCSSCCCC
T ss_pred cCHHHHhhcCCeecccccccc
Confidence 999999999999999999874
No 2
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=2.3e-43 Score=295.92 Aligned_cols=97 Identities=64% Similarity=1.176 Sum_probs=94.2
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCccccccccccccccccccccccccccccCCCCCCCCccceEecC
Q psy447 122 AKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLHK 201 (417)
Q Consensus 122 ~KPPySYa~LI~~AI~sSP~krLTLsEIY~wI~~~fPYyr~~~~gWKNSIRHNLSLNkcFvKVpR~~~~pGKGs~WtLdP 201 (417)
.||||||++||++||+++|+++|||+|||+||+++||||+.+.+|||||||||||||+||+||+|+.+++|||+||+|+|
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~gKg~~W~l~p 80 (97)
T 2hdc_A 1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 80 (97)
T ss_dssp CCCCCCHHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCT
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhhhhhheeecCCCCCCCCCcceEEECc
Confidence 48999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred CCcccccccchhhcccc
Q psy447 202 DSGNMFENGCYLRRQKR 218 (417)
Q Consensus 202 e~~~~fenG~~~rRrkr 218 (417)
+++++|++|.++|||+|
T Consensus 81 ~~~~~f~~g~~~rrr~r 97 (97)
T 2hdc_A 81 QSEDMFDNGSFLRRRKR 97 (97)
T ss_dssp THHHHHHHSCCCSSSCC
T ss_pred CHHHHHhCCCccCCCCC
Confidence 99999999999888875
No 3
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=4.4e-43 Score=295.59 Aligned_cols=98 Identities=52% Similarity=1.005 Sum_probs=73.0
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCccccccccccccccccccccccccccccCCCCCC-CCccceEec
Q psy447 122 AKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKP-GKGSFWTLH 200 (417)
Q Consensus 122 ~KPPySYa~LI~~AI~sSP~krLTLsEIY~wI~~~fPYyr~~~~gWKNSIRHNLSLNkcFvKVpR~~~~p-GKGs~WtLd 200 (417)
+||||||++||++||+++|+++|||+|||+||+++|||||.+..|||||||||||||+||+||+|+.++| |||+||+|+
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~p~gkg~~W~l~ 80 (100)
T 1kq8_A 1 PKPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLN 80 (100)
T ss_dssp ------CHHHHHHHHTTSSSSCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHHHHTCCEECSSCSCCSSSCCCCEECC
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhCccccCCCCceecccchheehhheeeecCCCCCCCCCCCeEEEEC
Confidence 5899999999999999999999999999999999999999999999999999999999999999988888 999999999
Q ss_pred CCCcccccccchhhccccc
Q psy447 201 KDSGNMFENGCYLRRQKRF 219 (417)
Q Consensus 201 Pe~~~~fenG~~~rRrkr~ 219 (417)
|+++++|++|+++|||+|+
T Consensus 81 p~~~~~f~~g~~~rrr~r~ 99 (100)
T 1kq8_A 81 PNSEYTFADGVFRRRRYRL 99 (100)
T ss_dssp C------------------
T ss_pred cCHHHHHhCCCcccCCCCC
Confidence 9999999999999998875
No 4
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=6.7e-43 Score=298.66 Aligned_cols=101 Identities=63% Similarity=1.149 Sum_probs=90.7
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCccccccccccccccccccccccccccccCCCCCCCCccceEecC
Q psy447 122 AKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLHK 201 (417)
Q Consensus 122 ~KPPySYa~LI~~AI~sSP~krLTLsEIY~wI~~~fPYyr~~~~gWKNSIRHNLSLNkcFvKVpR~~~~pGKGs~WtLdP 201 (417)
+||||||++||++||+++|+++|||+|||+||+++|||||.+.+|||||||||||||+||+||+|+.+++|||+||+|+|
T Consensus 2 ~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l~p 81 (109)
T 2hfh_A 2 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 81 (109)
T ss_dssp CCCCCCHHHHHHHHHHTCSSSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHHHHTCCBCCTTCTTSCSSCCCBBCCT
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhcchhccCCcccchhhhhhhhhhhhhhcCCCCCCCCCCceeEEECc
Confidence 69999999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred CCcccccccchhhccccccch
Q psy447 202 DSGNMFENGCYLRRQKRFKDD 222 (417)
Q Consensus 202 e~~~~fenG~~~rRrkr~kr~ 222 (417)
+++++|++|.++|||++++.-
T Consensus 82 ~~~~~f~~g~~~Rrr~~~~~~ 102 (109)
T 2hfh_A 82 QSEDMFDNGSFLRRRKRFKRL 102 (109)
T ss_dssp TCCHHHHSSSCC---------
T ss_pred cHHHHHhCCCcccCccccccc
Confidence 999999999999999887654
No 5
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=100.00 E-value=3.5e-42 Score=294.99 Aligned_cols=99 Identities=46% Similarity=0.892 Sum_probs=95.0
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCccccccccccccccccccccccccccccCCCCCCCCccceEe
Q psy447 120 THAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTL 199 (417)
Q Consensus 120 ~~~KPPySYa~LI~~AI~sSP~krLTLsEIY~wI~~~fPYyr~~~~gWKNSIRHNLSLNkcFvKVpR~~~~pGKGs~WtL 199 (417)
...||||||++||++||+++|+++|||+|||+||+++|||||.+..|||||||||||||+||+||+|..+++|||+||+|
T Consensus 13 ~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l 92 (111)
T 2c6y_A 13 SDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRI 92 (111)
T ss_dssp -CCCCSSCHHHHHHHHHHTSTTSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCEEEE
T ss_pred CCCCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCeeecchhHHhhhhhhhccccCCCCCCCCcceEEe
Confidence 47999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred cCCCcccccccchhhcccc
Q psy447 200 HKDSGNMFENGCYLRRQKR 218 (417)
Q Consensus 200 dPe~~~~fenG~~~rRrkr 218 (417)
+|+++.+|+++.++|||+|
T Consensus 93 ~p~~~~~~~~~~~r~rr~r 111 (111)
T 2c6y_A 93 DPASESKLIEQAFRKRRPR 111 (111)
T ss_dssp CHHHHHHHHHHHTCCCCCC
T ss_pred ChhHHHhhhcccccccCCC
Confidence 9999999999999888765
No 6
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=100.00 E-value=2e-38 Score=284.03 Aligned_cols=110 Identities=35% Similarity=0.673 Sum_probs=80.1
Q ss_pred ccccccCcCCCCCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCcccccc-----cccccccccccccccccccccc
Q psy447 111 ADKTYRRSYTHAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQN-----QQRWQNSIRHSLSFNDCFVKVP 185 (417)
Q Consensus 111 ~~k~~rr~~~~~KPPySYa~LI~~AI~sSP~krLTLsEIY~wI~~~fPYyr~~-----~~gWKNSIRHNLSLNkcFvKVp 185 (417)
+.+.+|| +.||||||++||++||+++|+++|||+|||+||+++|||||.+ ..+||||||||||||+||+||+
T Consensus 31 ~~~~~~r---n~kPp~SYa~LI~~AI~sSp~k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNLSLnk~F~Kv~ 107 (150)
T 1e17_A 31 RKGGSRR---NAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVH 107 (150)
T ss_dssp ----CCC---CTTCSCCHHHHHHHHHHHSSSCCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHHHSSTTEEEEC
T ss_pred ccCCCCC---CCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCchhccCCCCccccchhhccceeeeeeeeeEecC
Confidence 4455555 7899999999999999999999999999999999999999976 4799999999999999999999
Q ss_pred CCCCCCCCccceEecCCCcccccccchhhccccccchhHHHHH
Q psy447 186 RTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKRFKDDKKEVIR 228 (417)
Q Consensus 186 R~~~~pGKGs~WtLdPe~~~~fenG~~~rRrkr~kr~k~e~~R 228 (417)
| +++|||+||+|+|+++ +.|+.+|||.+.........+
T Consensus 108 r--~~~GKG~~W~ldp~~~---~~gk~~Rrr~~s~~~~~~l~~ 145 (150)
T 1e17_A 108 N--EATGKSSWWMLNPEGG---KSGKAPRRRAASMDSSSKLLR 145 (150)
T ss_dssp C--TTTSSSCEEEECTTCC------------------------
T ss_pred C--CCCCCcceEEECcccc---cCCccccccccccccccccch
Confidence 8 6789999999999986 456666665555444333433
No 7
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=100.00 E-value=4.3e-38 Score=271.87 Aligned_cols=82 Identities=40% Similarity=0.771 Sum_probs=76.0
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCccccccc-----cccccccccccccccccccccCCCCCCCCcc
Q psy447 121 HAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQ-----QRWQNSIRHSLSFNDCFVKVPRTPDKPGKGS 195 (417)
Q Consensus 121 ~~KPPySYa~LI~~AI~sSP~krLTLsEIY~wI~~~fPYyr~~~-----~gWKNSIRHNLSLNkcFvKVpR~~~~pGKGs 195 (417)
+.||||||++||++||+++|+++|||+|||+||+++||||+.+. .|||||||||||||+||+||+| +++|||+
T Consensus 9 n~kPp~SYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLSln~~F~Kv~~--~~~GKg~ 86 (117)
T 3coa_C 9 NAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQN--EGTGKSS 86 (117)
T ss_dssp BTTBSCCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHHHCTTEEEECC--SSTTCCC
T ss_pred CCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCcccccCCCCcccccchhccchheecchhhccccc--CCCCCcc
Confidence 78999999999999999999999999999999999999999875 7999999999999999999998 5789999
Q ss_pred ceEecCCCc
Q psy447 196 FWTLHKDSG 204 (417)
Q Consensus 196 ~WtLdPe~~ 204 (417)
||+|+|+++
T Consensus 87 ~W~l~p~~~ 95 (117)
T 3coa_C 87 WWMLNPEGG 95 (117)
T ss_dssp EEEECC---
T ss_pred eEEECcccc
Confidence 999999986
No 8
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=100.00 E-value=9.7e-38 Score=266.98 Aligned_cols=83 Identities=39% Similarity=0.781 Sum_probs=74.8
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCcccccc-----ccccccccccccccccccccccCCCCCCCCcc
Q psy447 121 HAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQN-----QQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGS 195 (417)
Q Consensus 121 ~~KPPySYa~LI~~AI~sSP~krLTLsEIY~wI~~~fPYyr~~-----~~gWKNSIRHNLSLNkcFvKVpR~~~~pGKGs 195 (417)
++||||||++||++||+++|+++|||+|||+||+++|||||.+ ..|||||||||||||+||+||+| +++|||+
T Consensus 22 ~~kPpySY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r--~~~GKG~ 99 (110)
T 3l2c_A 22 NAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN--EATGKSS 99 (110)
T ss_dssp BTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECC--CSTTCCC
T ss_pred CCCCCCCHHHHHHHHHHhCCccCcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhccHhhhheeCCC--CCCCCCc
Confidence 7999999999999999999999999999999999999999986 46999999999999999999998 4789999
Q ss_pred ceEecCCCcc
Q psy447 196 FWTLHKDSGN 205 (417)
Q Consensus 196 ~WtLdPe~~~ 205 (417)
||+|+|++++
T Consensus 100 ~W~l~p~~~~ 109 (110)
T 3l2c_A 100 WWMLNPEGGK 109 (110)
T ss_dssp EEEEC-----
T ss_pred eEEECccccC
Confidence 9999999863
No 9
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=100.00 E-value=4.5e-37 Score=252.17 Aligned_cols=78 Identities=40% Similarity=0.789 Sum_probs=74.3
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCcccccc-----ccccccccccccccccccccccCCCCCCCCcc
Q psy447 121 HAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQN-----QQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGS 195 (417)
Q Consensus 121 ~~KPPySYa~LI~~AI~sSP~krLTLsEIY~wI~~~fPYyr~~-----~~gWKNSIRHNLSLNkcFvKVpR~~~~pGKGs 195 (417)
++||||||++||++||+++|+++|||+|||+||+++|||||.+ ..|||||||||||||+||+||+| +++|||+
T Consensus 3 n~kp~~SY~~LI~~Ai~~sp~~~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r--~~~GKg~ 80 (85)
T 3bpy_A 3 NAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN--EATGKSS 80 (85)
T ss_dssp BTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECC--CSTTCCC
T ss_pred CCcCCCCHHHHHHHHHHhCCcCCccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhccHhhhheeCCC--CCCCCCC
Confidence 7999999999999999999999999999999999999999986 46999999999999999999998 4789999
Q ss_pred ceEec
Q psy447 196 FWTLH 200 (417)
Q Consensus 196 ~WtLd 200 (417)
||+||
T Consensus 81 ~W~ld 85 (85)
T 3bpy_A 81 WWMLN 85 (85)
T ss_dssp EEEEC
T ss_pred ceecC
Confidence 99996
No 10
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=100.00 E-value=8.3e-37 Score=254.64 Aligned_cols=77 Identities=40% Similarity=0.886 Sum_probs=74.1
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCccccccccccccccccccccccccccccCCCCCCCCccceEecC
Q psy447 122 AKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLHK 201 (417)
Q Consensus 122 ~KPPySYa~LI~~AI~sSP~krLTLsEIY~wI~~~fPYyr~~~~gWKNSIRHNLSLNkcFvKVpR~~~~pGKGs~WtLdP 201 (417)
.||||||++||++||+++|+++|||+|||+||+++|||||.+.+|||||||||||||+||+||++ |||+||+|||
T Consensus 2 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLSln~~F~kv~~-----gkG~~W~l~~ 76 (93)
T 2a07_F 2 VRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVEN-----VKGAVWTVDE 76 (93)
T ss_dssp CCCSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCTTBCCEEC-----SSSEECCBCH
T ss_pred CCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCccccCCCccccccceeeehhhceeecCC-----CCCCeeEECh
Confidence 69999999999999999999999999999999999999999999999999999999999999974 8999999998
Q ss_pred CC
Q psy447 202 DS 203 (417)
Q Consensus 202 e~ 203 (417)
++
T Consensus 77 ~~ 78 (93)
T 2a07_F 77 VE 78 (93)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 11
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=100.00 E-value=7.1e-35 Score=259.03 Aligned_cols=97 Identities=36% Similarity=0.754 Sum_probs=80.6
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCccccc-cccccccccccccccccccccccCCCCCCCCccceE
Q psy447 120 THAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQ-NQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWT 198 (417)
Q Consensus 120 ~~~KPPySYa~LI~~AI~sSP~krLTLsEIY~wI~~~fPYyr~-~~~gWKNSIRHNLSLNkcFvKVpR~~~~pGKGs~Wt 198 (417)
...||||||++||++||+++|+++|||+|||+||+++|||||. +..|||||||||||||+||+|+. +++|||+||+
T Consensus 15 ~~~KPpySYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNLSln~~F~r~~---~~~GKg~~W~ 91 (142)
T 3g73_A 15 VSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMFVRET---SANGKVSFWT 91 (142)
T ss_dssp TTSCCSSCHHHHHHHHHHTSTTSEECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHHHHCTTEEEEE---CTTSCCEEEE
T ss_pred CCCCCCCCHHHHHHHHHHhCCCCCcCHHHHHHHHHHhCCCccccCCCCccchhhhhhhhhhhheecC---CCCCCCceEE
Confidence 4689999999999999999999999999999999999999998 89999999999999999999873 5689999999
Q ss_pred ecCCCcccc-cccchhhccccc
Q psy447 199 LHKDSGNMF-ENGCYLRRQKRF 219 (417)
Q Consensus 199 LdPe~~~~f-enG~~~rRrkr~ 219 (417)
|+|++++.+ .++.+++.+...
T Consensus 92 i~p~~~~~l~~d~~~k~~~~~~ 113 (142)
T 3g73_A 92 IHPSANRYLTLDQVFKPLDPGS 113 (142)
T ss_dssp ECTTTCCCCCCC----------
T ss_pred ECccccccchhhhhhccccCCC
Confidence 999997654 555555554444
No 12
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=79.81 E-value=1.6 Score=34.48 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=28.4
Q ss_pred CHHHHHHHHHhc-CCCCCcCHHHHHHHHHhhCcc
Q psy447 127 SYISLITMAIQN-SPTKMLTLSEIYQFIMDLFPF 159 (417)
Q Consensus 127 SYa~LI~~AI~s-SP~krLTLsEIY~wI~~~fPY 159 (417)
+|..||..||.. ...+.-++.-|-.||+.+|+.
T Consensus 6 ~y~~MI~eAI~~lker~GsS~~AIkKyI~~~y~~ 39 (78)
T 1uhm_A 6 SYRELIIEGLTALKERKGSSRPALKKFIKENYPI 39 (78)
T ss_dssp CHHHHHHHHHHHHCCSSCEEHHHHHHHHHTTSCT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCCC
Confidence 699999999986 445578999999999999874
No 13
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=79.68 E-value=2 Score=34.84 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=28.2
Q ss_pred CHHHHHHHHHhcC-CCCCcCHHHHHHHHHhhCcc
Q psy447 127 SYISLITMAIQNS-PTKMLTLSEIYQFIMDLFPF 159 (417)
Q Consensus 127 SYa~LI~~AI~sS-P~krLTLsEIY~wI~~~fPY 159 (417)
+|..||..||... ..+.-++.-|..||+.+|+.
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~ 42 (88)
T 1uss_A 9 TYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFSS 42 (88)
T ss_dssp CHHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCC
Confidence 6999999999874 45578999999999999763
No 14
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=76.13 E-value=2.5 Score=34.51 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=27.9
Q ss_pred CHHHHHHHHHhcCC-CCCcCHHHHHHHHHhhCc
Q psy447 127 SYISLITMAIQNSP-TKMLTLSEIYQFIMDLFP 158 (417)
Q Consensus 127 SYa~LI~~AI~sSP-~krLTLsEIY~wI~~~fP 158 (417)
+|..||..||.... .+.-++.-|-.||+.+|+
T Consensus 9 ~y~~MI~eAI~~lker~GsS~~AI~KyI~~~y~ 41 (90)
T 1hst_A 9 TYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYK 41 (90)
T ss_dssp CHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHhccCCCCCHHHHHHHHHHHcc
Confidence 69999999998744 457899999999999976
No 15
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=73.32 E-value=1.6 Score=35.15 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHhc-CCCCCcCHHHHHHHHHhhCcc
Q psy447 126 YSYISLITMAIQN-SPTKMLTLSEIYQFIMDLFPF 159 (417)
Q Consensus 126 ySYa~LI~~AI~s-SP~krLTLsEIY~wI~~~fPY 159 (417)
-+|..||..||.. .+.+.-++.-|..||+.+|+-
T Consensus 10 p~y~~MI~eAI~~Lker~GsS~~AI~KyI~~~y~~ 44 (88)
T 2rqp_A 10 PKMDAILTEAIKACFQKSGASVVAIRKYIIHKYPS 44 (88)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHCST
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCC
Confidence 3699999999976 345568999999999999884
No 16
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=72.94 E-value=2.7 Score=34.50 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=28.2
Q ss_pred CHHHHHHHHHhcC-CCCCcCHHHHHHHHHhhCcc
Q psy447 127 SYISLITMAIQNS-PTKMLTLSEIYQFIMDLFPF 159 (417)
Q Consensus 127 SYa~LI~~AI~sS-P~krLTLsEIY~wI~~~fPY 159 (417)
+|..||..||... ..+.-++.-|-.||+.+|+.
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~ 42 (93)
T 1ust_A 9 SYRELIIEGLTALKERKGSSRPALKKFIKENYPI 42 (93)
T ss_dssp CHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHcccCCCcCHHHHHHHHHHHCCC
Confidence 6999999999874 45578999999999999763
No 17
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens}
Probab=60.67 E-value=2.4 Score=34.04 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHhcC-CCCCcCHHHHHHHHHhhCc
Q psy447 126 YSYISLITMAIQNS-PTKMLTLSEIYQFIMDLFP 158 (417)
Q Consensus 126 ySYa~LI~~AI~sS-P~krLTLsEIY~wI~~~fP 158 (417)
-+|..||..||... ..+.-++.-|..+|+..++
T Consensus 6 ~~y~~MI~eAI~aLker~GSS~~AI~K~i~~~~~ 39 (83)
T 2lso_A 6 GKYSQLVVETIRRLGERNGSSLAKIYTEAKKVPW 39 (83)
Confidence 48999999999874 3456788999999998875
No 18
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=41.18 E-value=3.3 Score=39.05 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=0.0
Q ss_pred ccccccchhh
Q psy447 306 NSYHQSFHQQ 315 (417)
Q Consensus 306 ~~~h~~hh~~ 315 (417)
|+|||+|||+
T Consensus 2 ~~~~~~~~~~ 11 (398)
T 3oti_A 2 HHHHHHHHHH 11 (398)
T ss_dssp ----------
T ss_pred CCcccccccc
Confidence 3444444443
No 19
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=36.02 E-value=8.8 Score=36.99 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCCCCcCHHHH--HHHHHhhCcccccccccccc
Q psy447 128 YISLITMAIQNSPTKMLTLSEI--YQFIMDLFPFYRQNQQRWQN 169 (417)
Q Consensus 128 Ya~LI~~AI~sSP~krLTLsEI--Y~wI~~~fPYyr~~~~gWKN 169 (417)
-..||...|.-.|++|+|..|+ +.||.+ .|||+.- .|++
T Consensus 261 ~~dli~~lL~~dp~~R~t~~e~~~~~~i~~-Hp~F~~i--dw~~ 301 (311)
T 4aw0_A 261 ARDLVEKLLVLDATKRLGCEEMEGYGPLKA-HPFFESV--TWEN 301 (311)
T ss_dssp HHHHHHHHSCSSGGGSTTSGGGTCHHHHHT-SGGGTTC--CCTT
T ss_pred HHHHHHHHccCCHhHCcChHHHcCCHHHHC-CCCcCCC--CHHH
Confidence 4579999999999999999998 578865 5999853 3764
No 20
>3abq_B Ethanolamine ammonia-lyase light chain; (beta/alpha)8 fold, cobalt, cobalamin; HET: B12; 2.05A {Escherichia coli} PDB: 3abo_B* 3abr_B* 3abs_B* 3any_B* 3ao0_B*
Probab=29.82 E-value=11 Score=37.32 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=0.0
Q ss_pred ccccccccchhhhHHHHHHHh
Q psy447 304 QQNSYHQSFHQQDSELAAMVA 324 (417)
Q Consensus 304 ~~~~~h~~hh~~~~~~~~~~~ 324 (417)
+|.+|||+||-.+.||..||+
T Consensus 2 ~~~~~~~~~~~~~~~l~~iv~ 22 (306)
T 3abq_B 2 DQSSHHHHHHMDQKQIEEIVR 22 (306)
T ss_dssp ---------------------
T ss_pred CccccccccccCHHHHHHHHH
Confidence 355688888888889988884
No 21
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=27.23 E-value=29 Score=32.59 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCCCCcCHHHHHH--HHHhhCccc
Q psy447 128 YISLITMAIQNSPTKMLTLSEIYQ--FIMDLFPFY 160 (417)
Q Consensus 128 Ya~LI~~AI~sSP~krLTLsEIY~--wI~~~fPYy 160 (417)
...||...|.-.|++|+|..||.+ ||+..+|-|
T Consensus 239 ~~~li~~~L~~dP~~R~s~~eil~hpw~k~~~p~~ 273 (275)
T 3hyh_A 239 AAGLIKRMLIVNPLNRISIHEIMQDDWFKVDLPEY 273 (275)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHHHCHHHHTTCCGG
T ss_pred HHHHHHHHccCChhHCcCHHHHHcCcccccCCChh
Confidence 578999999999999999999985 777766643
No 22
>3nk4_C ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_C*
Probab=27.20 E-value=16 Score=24.33 Aligned_cols=13 Identities=46% Similarity=0.856 Sum_probs=8.9
Q ss_pred ccCcCCCCccccc
Q psy447 329 HPHLIPPDHYNHH 341 (417)
Q Consensus 329 ~~~~~~~~~~~~~ 341 (417)
-|.||+.|||-||
T Consensus 17 gpvllsadhhhhh 29 (30)
T 3nk4_C 17 GPVLLSADHHHHH 29 (30)
T ss_dssp EEEEBCSCTTCCC
T ss_pred eeEEecccccccC
Confidence 4777887877554
No 23
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=26.30 E-value=17 Score=34.14 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=12.5
Q ss_pred hHHHHHHHhcCCcccCcCC
Q psy447 316 DSELAAMVASGRCHPHLIP 334 (417)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~ 334 (417)
..||+.. ..||.+|.+|.
T Consensus 45 k~el~~i-RtGRA~p~lLd 62 (209)
T 4gfq_A 45 SRELATV-RAGRASASVLD 62 (209)
T ss_dssp HHHHHTC-CSBSCCGGGGT
T ss_pred HHHHHhh-hcCCCCHHHhC
Confidence 4455554 46999999874
No 24
>1ghc_A GH1; chromosomal protein; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=25.62 E-value=8.7 Score=29.65 Aligned_cols=30 Identities=30% Similarity=0.272 Sum_probs=25.4
Q ss_pred CHHHHHHHHHhcC-CCCCcCHHHHHHHHHhh
Q psy447 127 SYISLITMAIQNS-PTKMLTLSEIYQFIMDL 156 (417)
Q Consensus 127 SYa~LI~~AI~sS-P~krLTLsEIY~wI~~~ 156 (417)
+|..||..||... ..+.-++.-|..||+.+
T Consensus 5 ~y~~mI~~AI~alker~GsS~~AI~Kyi~~~ 35 (75)
T 1ghc_A 5 SVTELITKAVSASKERKGLSLAALKKALAAG 35 (75)
T ss_dssp SHHHHHHHHHHHCSSSSCCTTSSGGGSSSSS
T ss_pred CHHHHHHHHHHHhccCCcccHHHHHHHHHHc
Confidence 5899999999874 44567888999999998
No 25
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=25.33 E-value=26 Score=27.51 Aligned_cols=16 Identities=6% Similarity=0.059 Sum_probs=10.2
Q ss_pred hHHHHHHHhcCCcccCcC
Q psy447 316 DSELAAMVASGRCHPHLI 333 (417)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~ 333 (417)
.+++...|.. --|.+|
T Consensus 23 ~~~f~~~l~~--~k~vvv 38 (121)
T 2j23_A 23 YDQFKQVTGG--DKVVVI 38 (121)
T ss_dssp HHHHHHHHSS--SSCEEE
T ss_pred HHHHHHHHcC--CCEEEE
Confidence 6888888843 345544
No 26
>1vf6_C Maguk P55 subfamily member 5; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Mus musculus} SCOP: a.194.1.1
Probab=24.24 E-value=23 Score=28.21 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=6.0
Q ss_pred cccccchhhhHHHHHHH
Q psy447 307 SYHQSFHQQDSELAAMV 323 (417)
Q Consensus 307 ~~h~~hh~~~~~~~~~~ 323 (417)
+|||+||.|+.||.-..
T Consensus 4 ~~~~~~~~~~~elEel~ 20 (72)
T 1vf6_C 4 SHHHHHHSQDPDVEDLF 20 (72)
T ss_dssp --------CCHHHHHHH
T ss_pred ccccccccCCcCHHHHH
Confidence 47788888877766554
No 27
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=24.03 E-value=16 Score=32.83 Aligned_cols=17 Identities=12% Similarity=-0.156 Sum_probs=3.6
Q ss_pred hhHHHHHHH--hcCCcccC
Q psy447 315 QDSELAAMV--ASGRCHPH 331 (417)
Q Consensus 315 ~~~~~~~~~--~~~~~~~~ 331 (417)
-|-|+.+|. .-|.-=|.
T Consensus 15 ~~~~~~~M~~l~~G~~aP~ 33 (221)
T 2c0d_A 15 GHIEGRHMKLSLVTKKAYN 33 (221)
T ss_dssp -----------CTTSBCCC
T ss_pred ccccccccccCCCCCCCCC
Confidence 388888885 34544443
No 28
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=23.26 E-value=18 Score=32.86 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=0.8
Q ss_pred cccccccccccch
Q psy447 301 SDFQQNSYHQSFH 313 (417)
Q Consensus 301 ~~~~~~~~h~~hh 313 (417)
....||+|||+||
T Consensus 229 ~~~~~~~~~~~~~ 241 (241)
T 1v58_A 229 GNKLQHHHHHHHH 241 (241)
T ss_dssp TC-----------
T ss_pred HHHHHhhccccCC
Confidence 3455666665555
No 29
>3qv0_A Mitochondrial acidic protein MAM33; A BOWL like structure, mitochondrial oxidative phosphorylati protein binding; 2.10A {Saccharomyces cerevisiae}
Probab=23.17 E-value=25 Score=33.24 Aligned_cols=17 Identities=18% Similarity=0.428 Sum_probs=5.7
Q ss_pred ccccchhhhHHHHHHHh
Q psy447 308 YHQSFHQQDSELAAMVA 324 (417)
Q Consensus 308 ~h~~hh~~~~~~~~~~~ 324 (417)
|||+|||....|++.++
T Consensus 3 ~~~~~~~~~~~l~~~L~ 19 (227)
T 3qv0_A 3 HHHHHHQETQRVGDILQ 19 (227)
T ss_dssp -------CHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHH
Confidence 67778885555665554
No 30
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=22.06 E-value=75 Score=27.90 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCc
Q psy447 126 YSYISLITMAIQNSPTKMLTLSEIYQFIMDLFP 158 (417)
Q Consensus 126 ySYa~LI~~AI~sSP~krLTLsEIY~wI~~~fP 158 (417)
-....||..++...|++|.|..||.+.|.+.+.
T Consensus 248 ~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~ 280 (296)
T 3uzp_A 248 SEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH 280 (296)
T ss_dssp HHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHH
Confidence 347899999999999999999999999987655
No 31
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=20.89 E-value=21 Score=32.72 Aligned_cols=14 Identities=50% Similarity=0.603 Sum_probs=0.0
Q ss_pred cccccchhhhHHHH
Q psy447 307 SYHQSFHQQDSELA 320 (417)
Q Consensus 307 ~~h~~hh~~~~~~~ 320 (417)
+|||+||.|+-.|+
T Consensus 4 ~~~~~~~~~~~~~~ 17 (334)
T 2pvf_A 4 SHHHHHHSQDPMLA 17 (334)
T ss_dssp --------------
T ss_pred cccccccccCchhc
No 32
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=20.71 E-value=76 Score=27.76 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHhcCCCCCcCHHHHHHHHHhhCcc
Q psy447 126 YSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPF 159 (417)
Q Consensus 126 ySYa~LI~~AI~sSP~krLTLsEIY~wI~~~fPY 159 (417)
-....||..++...|++|.|..||.+.+.+.+.-
T Consensus 248 ~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~ 281 (296)
T 4hgt_A 248 SEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 281 (296)
T ss_dssp HHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 4588999999999999999999999999887653
No 33
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=20.20 E-value=22 Score=32.96 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=0.0
Q ss_pred cccccchhh---------hHHHHHHHhcCCcc
Q psy447 307 SYHQSFHQQ---------DSELAAMVASGRCH 329 (417)
Q Consensus 307 ~~h~~hh~~---------~~~~~~~~~~~~~~ 329 (417)
+|||+||.| -+|++|-.....|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (254)
T 3tjj_A 4 SHHHHHHSQDPLVPRGSWETEERPRTREEECH 35 (254)
T ss_dssp --------------------------------
T ss_pred ccccccccCCCcccCCccccccccccchhhhh
Confidence 466666665 35666666666666
Done!