RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy447
(417 letters)
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double
helix, transcription-DNA complex; HET: DNA; 2.50A {Homo
sapiens} PDB: 1d5v_A
Length = 102
Score = 220 bits (562), Expect = 5e-72
Identities = 88/100 (88%), Positives = 94/100 (94%)
Query: 121 HAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDC 180
HAKPPYSYISLITMAIQ +P KMLTLSEIYQ+IMDLFP+YR+NQQRWQNSIRHSLSFNDC
Sbjct: 1 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDC 60
Query: 181 FVKVPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKRFK 220
FVKV R+PDKPGKGS+W LH SGNMFENGCYLRRQKRFK
Sbjct: 61 FVKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQKRFK 100
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding
domain, forkhead transcription factors, interleukin
enhancer binding factor; 2.4A {Homo sapiens} SCOP:
a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Length = 111
Score = 216 bits (552), Expect = 2e-70
Identities = 46/110 (41%), Positives = 64/110 (58%)
Query: 109 ARADKTYRRSYTHAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQ 168
+ + +KPPYSY LI AI +P K LTL+ IY I +P+YR + WQ
Sbjct: 2 SMTGGQQMGRGSDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQ 61
Query: 169 NSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKR 218
NSIRH+LS N F+KVPR+ ++PGKGSFW + S + + +R+ R
Sbjct: 62 NSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 111
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis,
winged helix protein, protein/DNA complex; HET: DNA; NMR
{Rattus norvegicus} SCOP: a.4.5.14
Length = 97
Score = 213 bits (544), Expect = 2e-69
Identities = 62/96 (64%), Positives = 75/96 (78%)
Query: 123 KPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 182
KPPYSYI+LITMAI SP K LTLS I +FI + FP+YR+ WQNSIRH+LS NDCFV
Sbjct: 2 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61
Query: 183 KVPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKR 218
K+PR P PGKG++WTL S +MF+NG +LRR+KR
Sbjct: 62 KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus
norvegicus} SCOP: a.4.5.14
Length = 109
Score = 212 bits (542), Expect = 7e-69
Identities = 66/110 (60%), Positives = 80/110 (72%), Gaps = 3/110 (2%)
Query: 123 KPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 182
KPPYSYI+LITMAI SP K LTLS I +FI + FP+YR+ WQNSIRH+LS NDCFV
Sbjct: 3 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 62
Query: 183 KVPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKRFKDDKKEVIRQTHH 232
K+PR P PGKG++WTL S +MF+NG +LRR+KRFK + HH
Sbjct: 63 KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFKRLQHH---HHHH 109
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged;
winged helix protein, structure, transcription; NMR
{Rattus norvegicus} SCOP: a.4.5.14
Length = 100
Score = 204 bits (522), Expect = 5e-66
Identities = 51/98 (52%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Query: 123 KPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 182
KPPYSYI+LITMAI++S LTL+EI +++M FPF+R + W+NS+RH+LS NDCFV
Sbjct: 2 KPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFV 61
Query: 183 KVPRTPDKP-GKGSFWTLHKDSGNMFENGCYLRRQKRF 219
KV R P +P GK ++W L+ +S F +G + RR+ R
Sbjct: 62 KVLRDPSRPWGKDNYWMLNPNSEYTFADGVFRRRRYRL 99
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription
factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Length = 142
Score = 185 bits (471), Expect = 7e-58
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 112 DKTYRRSYTHAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQ-NQQRWQNS 170
++ +PPYSY+++I AI ++ K +TL +IY +I D FP+++ + W+NS
Sbjct: 7 PSASWQNSVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNS 66
Query: 171 IRHSLSFNDCFVKVPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKRFKDDKKEVIRQT 230
IRH+LS +D FV+ GK SFWT+H + + E +
Sbjct: 67 IRHNLSLHDMFVRE---TSANGKVSFWTIHPSANRYLTLDQVFKPLDPGSPQLPEHLESQ 123
Query: 231 HHKS 234
+
Sbjct: 124 QKRP 127
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer,
monomer, winged-helix, magnesium, transcription/DNA
complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F
2kiu_A 3qrf_F
Length = 93
Score = 167 bits (426), Expect = 7e-52
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 13/99 (13%)
Query: 123 KPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 182
+PP++Y +LI AI S + LTL+EIY + F ++R+N W+N++RH+LS + CFV
Sbjct: 3 RPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFV 62
Query: 183 KVPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKRFKD 221
+V KG+ WT+ + Y +R+ +
Sbjct: 63 RVEN-----VKGAVWTVDEVE--------YQKRRSQKIT 88
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal
rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB:
3co7_C* 2k86_A 2uzk_A
Length = 117
Score = 164 bits (417), Expect = 3e-50
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 10/118 (8%)
Query: 116 RRSYTHAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQ-----NQQRWQNS 170
S +A SY LIT AI++S K LTLS+IY++++ P+++ + W+NS
Sbjct: 4 SSSRRNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNS 63
Query: 171 IRHSLSFNDCFVKVPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKRFKDDKKEVIR 228
IRH+LS + F++V + GK S+W L+ + G ++G RR+ D+ + +
Sbjct: 64 IRHNLSLHSKFIRVQN--EGTGKSSWWMLNPEGG---KSGKSPRRRAASMDNNSKFAK 116
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP:
a.4.5.14
Length = 150
Score = 163 bits (414), Expect = 3e-49
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 10/139 (7%)
Query: 99 SPSPGALQRVARADKTYRRSYTHAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFP 158
S A S +A SY LI+ AI+++P K LTL++IY++++ P
Sbjct: 16 RGSHMLEDPGAVTGPRKGGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVP 75
Query: 159 FYR-----QNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLHKDSGNMFENGCYL 213
+++ + W+NSIRH+LS + F+KV + GK S+W L+ + ++G
Sbjct: 76 YFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN--EATGKSSWWMLNPEG---GKSGKAP 130
Query: 214 RRQKRFKDDKKEVIRQTHH 232
RR+ D +++R
Sbjct: 131 RRRAASMDSSSKLLRGRSK 149
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding
domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
SCOP: a.4.5.14
Length = 85
Score = 159 bits (404), Expect = 1e-48
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 7/85 (8%)
Query: 121 HAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYR-----QNQQRWQNSIRHSL 175
+A SY LI+ AI+++P K LTL++IY++++ P+++ + W+NSIRH+L
Sbjct: 3 NAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNL 62
Query: 176 SFNDCFVKVPRTPDKPGKGSFWTLH 200
S + F+KV + GK S+W L+
Sbjct: 63 SLHSKFIKVHN--EATGKSSWWMLN 85
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP;
1.87A {Homo sapiens} PDB: 3co6_C*
Length = 110
Score = 159 bits (403), Expect = 3e-48
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 12/115 (10%)
Query: 96 AENSPSPGALQRVARADKTYRRSYTHAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMD 155
+ PGA+ S +A SY LI+ AI+++P K LTL++IY++++
Sbjct: 2 SHMLEDPGAVT-----GPRKGGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVR 56
Query: 156 LFPFYR-----QNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLHKDSGN 205
P+++ + W+NSIRH+LS + F+KV + GK S+W L+ + G
Sbjct: 57 TVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN--EATGKSSWWMLNPEGGK 109
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 2e-05
Identities = 51/363 (14%), Positives = 92/363 (25%), Gaps = 133/363 (36%)
Query: 78 MGGINSYNTALTTGRAELAENSPSPGALQRVARADKTYRRSYTHAKPPYSYISLITMAIQ 137
+ G G+ +A + V + K K + I + +
Sbjct: 158 VLGS---------GKTWVALD---------VCLSYKV------QCKMDFK-IFWLNLKNC 192
Query: 138 NSPTKMLT-LSEIYQFIM-------DLFPFYRQNQQRWQNSIR---------HSL----- 175
NSP +L L ++ I D + Q +R + L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 176 --------SFN-DC-------------FVKVPRTPDKPGKGSFWTLHKD-SGNMFENGCY 212
+FN C F+ T TL D ++ Y
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--Y 310
Query: 213 LRRQKRFKDDKKEVIRQTHHKSVSPTHH----HPTHHHHHHSHHTHHNSHNTHSH---QS 265
L R +D +EV + +P + H + + + S
Sbjct: 311 LD--CRPQDLPREV------LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 266 HDAGGKKSPETKPHLSELAML----------------GLTKEDAM-------SAGLLHSD 302
+ + E + L++ + K D M L+
Sbjct: 363 LNV--LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 303 FQQNSY-----HQSFHQQDSELAAM---------VASGRCHPHLIPP--DHY-----NHH 341
++++ + + A+ + LIPP D Y HH
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 342 LKQ 344
LK
Sbjct: 481 LKN 483
Score = 41.8 bits (97), Expect = 4e-04
Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 31/174 (17%)
Query: 244 HHHHHH-----SHHTHHNSHNTHSHQS---HDAGGKKSPE-TKPHLS--ELAMLGLTKED 292
HHHHHH H + + + K + K LS E+ + + +D
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-IMSKD 59
Query: 293 AMSA-----GLLHSDFQQNSYHQSF----HQQDSE-LAAMVASGRCHPHLIPPDHYNHHL 342
A+S L S +Q Q F + + + L + + + + P + Y
Sbjct: 60 AVSGTLRLFWTLLS--KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM-MTRMYIEQR 116
Query: 343 KQEYGASAVNHPFPVSRLLPSASAMSAAMAMSADSAKSIDLCKMYEMTG-GYST 395
+ Y + V + VSRL P A + AK++ + + G G +
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQA--LLELRPAKNVLI---DGVLGSGKTW 165
>1pq4_A Periplasmic binding protein component of AN ABC T uptake
transporter; ZNUA, loop, metal-binding, metal binding
protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB:
2ov3_A 2ov1_A
Length = 291
Score = 43.2 bits (102), Expect = 9e-05
Identities = 15/112 (13%), Positives = 27/112 (24%), Gaps = 26/112 (23%)
Query: 228 RQTHHKSVSPTHHHPTHHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKPH--LS-ELA 284
+ H H H H + D PH LS L
Sbjct: 92 EKHDHSHGEEEGHDDHSHDGHDHGSESEKEKAKGALMVAD----------PHIWLSPTLV 141
Query: 285 ML-------GLTKEDAMSAGLLHSDFQQN--SYHQSFHQQDSELAAMVASGR 327
L + D + ++ N ++ + + EL ++
Sbjct: 142 KRQATTIAKELAELDPDNR----DQYEANLAAFLAELERLNQELGQILQPLP 189
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 1e-04
Identities = 32/209 (15%), Positives = 57/209 (27%), Gaps = 63/209 (30%)
Query: 231 HHKSVSPTHHHPTHHHHHHS----HHTHHNSHNTHSHQSHDAGGKKSPETKPHLSELAM- 285
H S+ PT S T + D P T L +
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE-----PTTPAEL--VGKF 64
Query: 286 LGLT--KEDAMSAG----LLHSDFQQNSYHQSFHQ---QDSELAAMVASGRCHPHLIPPD 336
LG + G +L+ + F + +++ A+ A + +
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTE------FENCYLEGNDIHALAAK-------LLQE 111
Query: 337 HYNHHLKQE------YGASAV-NHPFP---VSRLLPSASAMSAAMAMSADSAKSIDLCKM 386
+ +K + A + PF S L + +A ++
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA---------------QL 156
Query: 387 YEMTGGYSTGGNNDSYYQS-SSLYHHSTT 414
+ GG GN D Y++ LY
Sbjct: 157 VAIFGGQ---GNTDDYFEELRDLYQTYHV 182
Score = 35.8 bits (82), Expect = 0.030
Identities = 53/321 (16%), Positives = 84/321 (26%), Gaps = 163/321 (50%)
Query: 91 GRAELAENSPSPGALQRV-ARADKTYRRSYTHAKPPYSYISLITMAIQNSPTKMLTLSEI 149
G +L + S A Q V RAD ++ +Y S++ + + N+P + I
Sbjct: 1632 GM-DLYKTSK---AAQDVWNRADNHFKDTYG--------FSILDI-VINNPVNL----TI 1674
Query: 150 YQFIMDLFPFYRQNQQRWQNSIRH---SLSFNDCFVKVPRTPDKPGKGSFWTLHKD---- 202
+ F + +R IR ++ F D GK + K+
Sbjct: 1675 H--------FGGEKGKR----IRENYSAMIFETI-------VD--GKLKTEKIFKEINEH 1713
Query: 203 -SGNMFENGCYLRRQKRFKDDKKEVIRQTHHKSVSPTHHHPTHHHHHHSHHTHHNSHNTH 261
+ F +K ++ T T
Sbjct: 1714 STSYTFR-------------SEKGLLSATQ---------------------------FT- 1732
Query: 262 SHQSHDAGGKKSPETKPHL--SELAML------GLTKEDAMSAGLLHSDFQQNSYHQSFH 313
Q P L E A GL DA AG HS
Sbjct: 1733 --Q-------------PALTLMEKAAFEDLKSKGLIPADATFAG--HS------------ 1763
Query: 314 QQDSEL---AAMVAS----------------GRCHPHLIPPDHYNHHLKQEYGASAVNHP 354
L AA+ + G +P D + YG A+N P
Sbjct: 1764 -----LGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELG---RSNYGMIAIN-P 1814
Query: 355 FPVSRLLPSASAMSAAMAMSA 375
++A+ + A
Sbjct: 1815 ----------GRVAASFSQEA 1825
Score = 34.6 bits (79), Expect = 0.069
Identities = 27/129 (20%), Positives = 41/129 (31%), Gaps = 40/129 (31%)
Query: 81 INSYNTALTTGRAELAENSPSPGALQRVARADKTYRRSYTHAKPPYSYISLITMAI---Q 137
I +Y TA + + S S AL R A+ +AI Q
Sbjct: 123 IKNYITARIMAKRPFDKKSNS--ALFRAVGEGN--------AQ---------LVAIFGGQ 163
Query: 138 NSPTKMLT-LSEIYQ----FIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKV-------- 184
+ L ++YQ + DL + + + IR +L F +
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLI---KFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 185 -P-RTPDKP 191
P TPDK
Sbjct: 221 NPSNTPDKD 229
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of
two (beta/ALFA)4 domains, metal transport; 1.70A
{Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A
2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Length = 284
Score = 35.4 bits (82), Expect = 0.021
Identities = 14/100 (14%), Positives = 25/100 (25%), Gaps = 24/100 (24%)
Query: 237 PTHHHPTHHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKPH--LS-ELAMLGLTKEDA 293
+ H H S H H + H LS E+A A
Sbjct: 85 KPLLMKSIHGDDDDHDHAEKSDEDHHHGDFN----------MHLWLSPEIARATA---VA 131
Query: 294 MSAGLLHSD------FQQN--SYHQSFHQQDSELAAMVAS 325
+ L+ N + ++++ +A
Sbjct: 132 IHGKLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAP 171
Score = 33.1 bits (76), Expect = 0.12
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 220 KDDKKEVIRQTHHKSVSPTHHHPTHHHHHHSHHTHH 255
+D K +++ H H + HHH H
Sbjct: 82 EDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDFNMH 117
Score = 32.7 bits (75), Expect = 0.17
Identities = 5/28 (17%), Positives = 5/28 (17%)
Query: 231 HHKSVSPTHHHPTHHHHHHSHHTHHNSH 258
H HH N H
Sbjct: 90 KSIHGDDDDHDHAEKSDEDHHHGDFNMH 117
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal
binding protein; 2.40A {Streptococcus pneumoniae}
Length = 284
Score = 33.8 bits (78), Expect = 0.070
Identities = 3/40 (7%), Positives = 9/40 (22%)
Query: 222 DKKEVIRQTHHKSVSPTHHHPTHHHHHHSHHTHHNSHNTH 261
K +V + ++ ++ H
Sbjct: 81 KKSKVKVLEASEGMTLERVPGLEDVEAGDGVDEKTLYDPH 120
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB:
3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Length = 371
Score = 33.7 bits (77), Expect = 0.11
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 244 HHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKP 278
HHHHHH HH HH+S + H +S
Sbjct: 3 HHHHHHHHHHHHSSGHIDDDDKHMLEMIQSHPLLA 37
Score = 33.3 bits (76), Expect = 0.12
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 237 PTHHHPTHHHHHHSHHTHHNS 257
HHH HHHHHHS +
Sbjct: 2 GHHHHHHHHHHHHSSGHIDDD 22
Score = 27.5 bits (61), Expect = 9.8
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 239 HHHPTHHHHHHSHHTHHNSHNTHSHQSH 266
HHH HHHHH S H + +
Sbjct: 5 HHHHHHHHHHSSGHIDDDDKHMLEMIQS 32
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus
stearothermophilus} SCOP: b.43.3.1
Length = 99
Score = 31.3 bits (72), Expect = 0.12
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 217 KRFKDDKKEV 226
KR+KDD +EV
Sbjct: 57 KRYKDDVREV 66
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 31.9 bits (72), Expect = 0.15
Identities = 11/45 (24%), Positives = 14/45 (31%)
Query: 238 THHHPTHHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKPHLSE 282
HHH HHHH H + + G + H E
Sbjct: 3 HHHHHHHHHHSSGHIEGRHMLEEPAASFSQPGSMGLDKNTVHDQE 47
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 32.9 bits (76), Expect = 0.16
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 245 HHHHHSHHTHHNSHNTHSH 263
HHHHH HH H + H H
Sbjct: 3 HHHHHHHHHHSSGHIEGRH 21
Score = 29.5 bits (67), Expect = 1.7
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 246 HHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKP 278
HHHH HH HH+S + E K
Sbjct: 3 HHHHHHHHHHSSGHIEGRHMKLEFMNLLSENKK 35
Score = 29.5 bits (67), Expect = 2.0
Identities = 10/23 (43%), Positives = 10/23 (43%)
Query: 239 HHHPTHHHHHHSHHTHHNSHNTH 261
HHH HHHHH S H
Sbjct: 3 HHHHHHHHHHSSGHIEGRHMKLE 25
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV;
calmodulin-binding, nucleotide-binding,
serine/threonine-protein kinase, ATP-binding; HET: DKI;
2.17A {Homo sapiens}
Length = 349
Score = 32.7 bits (75), Expect = 0.21
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 244 HHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKPHLSELAMLGLTKED 292
HHHHHHS + N + +P T + + + G ++
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMSSVTASAAPGTASLVPDYWIDGSNRDA 50
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding,
nucleotide-binding, membrane, transmembrane, transport
protein; 3.00A {Methanosarcina acetivorans} SCOP:
f.58.1.1
Length = 295
Score = 32.4 bits (74), Expect = 0.23
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 246 HHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKP 278
HHHH HH HH+S Q H +
Sbjct: 3 HHHHHHHHHHSSGENLYFQGHMKAKNRKTRKFE 35
Score = 28.9 bits (65), Expect = 3.1
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 244 HHHHHHSHHT 253
HHHHHH HH+
Sbjct: 4 HHHHHHHHHS 13
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone,
triacylglycerol hydrolase, all alpha helix protein, A/B
hydrolase fold; 1.85A {Burkholderia glumae} SCOP:
a.137.15.1
Length = 332
Score = 31.7 bits (71), Expect = 0.37
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 245 HHHHHSHHTHHNSHNTHSHQSHDAGGKKSPET 276
HHHHH HH H + H H +
Sbjct: 2 HHHHHHHHHHSSGHIEGRHMPAAPSPAPAGAV 33
Score = 30.9 bits (69), Expect = 0.84
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 239 HHHPTHHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKPH 279
HHH HHHHHH H + + S G +
Sbjct: 2 HHH--HHHHHHHSSGHIEGRHMPAAPSPAPAGAVAGGPAAG 40
Score = 28.6 bits (63), Expect = 3.5
Identities = 15/64 (23%), Positives = 19/64 (29%)
Query: 244 HHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKPHLSELAMLGLTKEDAMSAGLLHSDF 303
HHHHHH HH+ + H + + P A E AM
Sbjct: 3 HHHHHHHHHSSGHIEGRHMPAAPSPAPAGAVAGGPAAGVPAAASGAAEAAMPLPAALPGA 62
Query: 304 QQNS 307
S
Sbjct: 63 LAGS 66
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer,
transferase, serine/threonine-protein kinase,
nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Length = 373
Score = 31.6 bits (72), Expect = 0.41
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 244 HHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKPHLSE 282
HHHHHHS + N + ++G + S E
Sbjct: 3 HHHHHHSSGVDLGTENLYFQSMKNSGDQDSRSGHNEAKE 41
>2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis,
alpha/beta- hydrolases, catalytic triade, hydrolase;
1.8A {Bacillus subtilis} PDB: 2cbg_A*
Length = 244
Score = 31.3 bits (71), Expect = 0.43
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 224 KEVIRQTHHKSVSPTHHHPTHHHHHH 249
++ + + + H +HHHHHH
Sbjct: 219 LNILDKINSDQKVLPNKHGSHHHHHH 244
>3t2c_A Fructose-1,6-bisphosphate aldolase/phosphatase; (beta/alpha)8 TIM
barrel, FBP, F6P, DHAP, GAP, phosphorylati lyase,
hydrolase; HET: 13P; 1.30A {Thermoproteus neutrophilus}
PDB: 3t2b_A* 3t2d_A* 3t2e_A* 3t2f_A 3t2g_A*
Length = 407
Score = 31.5 bits (71), Expect = 0.47
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 214 RRQKRFKDDKKEVIRQTHHKSVSPTHHHPTHHHHHH 249
+++ D+K+ I + H HHHHH
Sbjct: 371 YPADQYEKDRKKYIEAVVKGAKVEESQHDLEHHHHH 406
>1fft_C Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane
protein, oxidoreductase; HET: HEM HEO; 3.50A
{Escherichia coli} SCOP: f.25.1.1
Length = 204
Score = 31.1 bits (71), Expect = 0.50
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 236 SPTHHHPTHHHHHHSHHTHHNSH 258
+ T H T H H H HH +
Sbjct: 3 TDTLTHATAHAHEHGHHDAGGTK 25
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding
receptor, metal-binding, helical backbone, alpha/beta
domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Length = 286
Score = 31.1 bits (71), Expect = 0.52
Identities = 5/45 (11%), Positives = 11/45 (24%), Gaps = 2/45 (4%)
Query: 217 KRFKDDKKEVIRQTHHKSVSPTHHHPTHHHHHHSHHTHHNSHNTH 261
K K +V + K ++ ++ H
Sbjct: 80 PNLKKSKVDVFEAS--KPLTLDRVKGLEDMEVTQGIDPATLYDPH 122
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 31.6 bits (71), Expect = 0.53
Identities = 31/222 (13%), Positives = 64/222 (28%), Gaps = 17/222 (7%)
Query: 29 CSPQSGSTGTPLGGFSSNMHSMGSINGMNGPNCMSTGSMGYSSNMNAACMGGINSYNTAL 88
+ ++ + + + + + +
Sbjct: 241 ETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDI 300
Query: 89 TTGRAELAENSPSPGALQRVARADKTYRRSYTHAKPPYSYISLITMAIQNSPTKMLTLSE 148
G+ + A + G ++ A + + + Y + T+ + K L +
Sbjct: 301 LVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKEVHAAKSLAII- 359
Query: 149 IYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLHKDSG-NMF 207
+ F + P + N + DC P + H +S N F
Sbjct: 360 VGLFALCWLPLHIINC--------FTFFCPDCS----HAPLWLMYLAIVLSHTNSVVNPF 407
Query: 208 ENGCYLRRQKRFKDDKKEVIRQTHHKSVSPTHHHPTHHHHHH 249
Y R + F+ +++IR + P H HHHHHH
Sbjct: 408 ---IYAYRIREFRQTFRKIIRSHVLRQQEPFKAHHHHHHHHH 446
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Length = 136
Score = 29.9 bits (67), Expect = 0.64
Identities = 3/32 (9%), Positives = 6/32 (18%)
Query: 229 QTHHKSVSPTHHHPTHHHHHHSHHTHHNSHNT 260
+++ T H H
Sbjct: 20 GAVNQTARQAEADGTDIVTDHDRGVHGYHKQK 51
>3rea_A Protein NEF; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3
domain, PR binding; 2.00A {Hiv-1 M} PDB: 3rbb_A 3reb_A
1efn_B 1avv_A 1avz_A 2nef_A
Length = 166
Score = 30.4 bits (69), Expect = 0.66
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 18/92 (19%)
Query: 144 LTLSEIYQFIMDLFPFYRQNQ-QRWQN-----SIRHSLSFNDCFVKVPRTPDKPGKGSFW 197
L S+ Q I+DL+ ++ Q WQN IR+ L+F CF VP P+K +
Sbjct: 60 LIWSQRRQEILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPEKVEE---- 115
Query: 198 TLHKDSGNMFENGCYLR--RQKRFKDDKKEVI 227
N EN L +D +KEV+
Sbjct: 116 ------ANEGENNSLLHPMSLHGMEDAEKEVL 141
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP
binding, structure function project, S2F, unknown
function; 2.00A {Escherichia coli} SCOP: c.37.1.10
d.237.1.1
Length = 318
Score = 31.0 bits (71), Expect = 0.67
Identities = 2/30 (6%), Positives = 7/30 (23%)
Query: 236 SPTHHHPTHHHHHHSHHTHHNSHNTHSHQS 265
+ + H N ++ +
Sbjct: 202 MLEENVVSTKPRFHFIADKQNDISSIVVEL 231
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein,
cobalt, copper, cytoplasm, metal- binding, nickel,
rotamase, zinc; NMR {Escherichia coli}
Length = 196
Score = 30.4 bits (69), Expect = 0.67
Identities = 9/31 (29%), Positives = 9/31 (29%)
Query: 240 HHPTHHHHHHSHHTHHNSHNTHSHQSHDAGG 270
H HHH H H H H G
Sbjct: 153 HGAHDHHHDHDHDGCCGGHGHDHGHEHGGEG 183
Score = 28.5 bits (64), Expect = 3.4
Identities = 10/35 (28%), Positives = 11/35 (31%)
Query: 239 HHHPTHHHHHHSHHTHHNSHNTHSHQSHDAGGKKS 273
H H H HH H H H H G +
Sbjct: 149 HGHVHGAHDHHHDHDHDGCCGGHGHDHGHEHGGEG 183
Score = 27.0 bits (60), Expect = 9.8
Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 5/38 (13%)
Query: 239 HHHPTHHHHHH-----SHHTHHNSHNTHSHQSHDAGGK 271
H H H HHH H + H GGK
Sbjct: 151 HVHGAHDHHHDHDHDGCCGGHGHDHGHEHGGEGCCGGK 188
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.60A {Bacillus subtilis}
Length = 312
Score = 30.8 bits (70), Expect = 0.69
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 239 HHHPTHHHHHHSHHTHHNSHNTH 261
H H H H H ++ + H
Sbjct: 111 GSEEEHEEHDHGEHEHSHAMDPH 133
Score = 28.9 bits (65), Expect = 3.5
Identities = 16/105 (15%), Positives = 24/105 (22%), Gaps = 33/105 (31%)
Query: 233 KSVSPTHHHPTHHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKPH--LS-ELAML--- 286
K + H H H + D PH LS LA
Sbjct: 104 KGIDLMEGSEEEHEEHDHGEHEH-------SHAMD----------PHVWLSPVLAQKEVK 146
Query: 287 ----GLTKEDAMSAGLLHSDFQQN--SYHQSFHQQDSELAAMVAS 325
+ K+D + +++N Y D
Sbjct: 147 NITAQIVKQDPDNK----EYYEKNSKEYIAKLQDLDKLYRTTAKK 187
>3b9f_I Protein C inhibitor; michaelis complex, acute phase, blood
coagulation, cleavage of basic residues, disease
mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens}
PDB: 2ol2_A*
Length = 395
Score = 31.1 bits (71), Expect = 0.70
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 239 HHHPTHHHHHHSHHTHHNSHNTHSHQS 265
HHH HHHHH S H + +
Sbjct: 3 HHHHHHHHHHSSGHIDDDDKHMVGATV 29
Score = 28.8 bits (65), Expect = 3.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 246 HHHHSHHTHHNSHNTHSHQSHDAGGKKSPET 276
HHHH HH HH+S + H G +P +
Sbjct: 3 HHHHHHHHHHSSGHIDDDDKHMVGATVAPSS 33
Score = 27.6 bits (62), Expect = 8.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 244 HHHHHHSHHTHHNSHNTHSHQSH 266
HHHHHH HH+ + + H
Sbjct: 4 HHHHHHHHHSSGHIDDDDKHMVG 26
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 120
Score = 29.6 bits (67), Expect = 0.78
Identities = 4/10 (40%), Positives = 5/10 (50%)
Query: 217 KRFKDDKKEV 226
K KDD +
Sbjct: 64 KHHKDDISVI 73
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone,
rotamase; NMR {Escherichia coli}
Length = 171
Score = 29.9 bits (68), Expect = 0.81
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 239 HHHPTHHHHHHSHHTHHNSHN 259
H H H HHH H HH+ H+
Sbjct: 151 HVHGAHDHHHDHDHDHHHHHH 171
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 30.8 bits (69), Expect = 0.93
Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 2/67 (2%)
Query: 12 GSPGMTPSYSMNSVINSCSPQSGSTGTPLGGFS--SNMHSMGSINGMNGPNCMSTGSMGY 69
SP + + + + SP GF + + G+ P S S
Sbjct: 1488 RSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAM 1547
Query: 70 SSNMNAA 76
S
Sbjct: 1548 SPGYGLT 1554
Score = 28.1 bits (62), Expect = 7.3
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 9 TSLGSPGMTPSYSMNSVINSCSPQSGSTGTPLGGFSSNMHSMGSINGMNGPNCMSTGSMG 68
S G +PSYS +S S SP + S + P+ S S
Sbjct: 1547 MSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPS 1605
Query: 69 YSS 71
YS+
Sbjct: 1606 YSA 1608
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib
complex; HET: NDP TOP; 1.90A {Coxiella burnetii} PDB:
3tq9_A* 3tqa_A* 3tqb_A*
Length = 178
Score = 29.5 bits (67), Expect = 1.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 233 KSVSPTHHHPTHHHHHH 249
+++ HH HHHHHH
Sbjct: 162 ENLYFQGHHHHHHHHHH 178
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 29.8 bits (67), Expect = 1.2
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 246 HHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKPHLSELAML-GLTKEDAMSAGLLHSDFQ 304
HHHH HH HH+S + H GG S +K L+E L LTK++ + H F
Sbjct: 3 HHHHHHHHHHSSGHIDDDDKH-MGGSGSRLSKELLAEYQDLTFLTKQEILL---AHRRFC 58
Query: 305 Q 305
+
Sbjct: 59 E 59
>3ik5_A Protein NEF; protein-protein complex, cell membrane, lipoprotein,
membran myristate; 2.05A {Simian immunodeficiency virus}
PDB: 3ioz_A
Length = 143
Score = 29.2 bits (66), Expect = 1.3
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 20/92 (21%)
Query: 144 LTLSEIYQFIMDLFPFYRQNQ-QRWQN-----SIRHSLSFNDCFVKVPRTPDKPGKGSFW 197
+ S I+D++ + WQ+ IR+ +F + VP
Sbjct: 40 IYYSARRHRILDIYLEKEEGIIPDWQDYTSGPGIRYPKTFGWLWKLVPVNVS-------- 91
Query: 198 TLHKDSGNMFENGCYLR--RQKRFKDDKKEVI 227
D E + + ++ D EV+
Sbjct: 92 ----DEAQEDEEHYLMHPAQTSQWDDPWGEVL 119
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci
inhibitory kinase; structural genomics, structural
genomics consortium, SGC; 1.70A {Homo sapiens}
Length = 311
Score = 30.0 bits (68), Expect = 1.3
Identities = 24/122 (19%), Positives = 33/122 (27%), Gaps = 15/122 (12%)
Query: 244 HHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKPHLSELAMLGLTKEDAMSAGLLHSDF 303
HHHHHHS + N + H ++ L G S F
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMHQLQPRRVSFRGEASETLQSPGYDPSRPES--FFQQSF 59
Query: 304 Q------QNSY---HQSFHQQDSELAAMVASGRCHPHLIPPDHYNHHLKQEYG-ASAVNH 353
Q SY + ++D L A+ S P L + H
Sbjct: 60 QRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMS---PFRGPKDRARKLAEVGSHEKVGQH 116
Query: 354 PF 355
P
Sbjct: 117 PC 118
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase;
2.95A {Clostridium perfringens}
Length = 560
Score = 30.1 bits (67), Expect = 1.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 239 HHHPTHHHHHHSHHTHHNSHN 259
HHH HHHHH S H + +
Sbjct: 3 HHHHHHHHHHSSGHIDDDDKH 23
Score = 29.3 bits (65), Expect = 2.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 246 HHHHSHHTHHNSHNTHSHQSH 266
HHHH HH HH+S + H
Sbjct: 3 HHHHHHHHHHSSGHIDDDDKH 23
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.6
Identities = 3/26 (11%), Positives = 11/26 (42%), Gaps = 4/26 (15%)
Query: 1 MENMLSHNTSLGSPGMTPSYSMNSVI 26
++ L L + P+ ++ + +
Sbjct: 25 LQASLK----LYADDSAPALAIKATM 46
>4en2_B Protein NEF; human immunodeficiency virus 1, HIV, NEF, antigen
presentation, HOST defense, adaptor protein complex 1,
MU1 subunit; 2.58A {Human immunodeficiency virus 1} PDB:
4emz_C 2xi1_A 2xi1_B 1qa5_A* 1qa4_A 1zec_A
Length = 206
Score = 29.6 bits (67), Expect = 1.6
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 18/92 (19%)
Query: 144 LTLSEIYQFIMDLFPFYRQNQ-QRWQN-----SIRHSLSFNDCFVKVPRTPDKPGKGSFW 197
L S+ Q I+DL+ ++ Q WQN +R+ L+F C+ VP PDK +
Sbjct: 100 LIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCYKLVPVEPDKVEE---- 155
Query: 198 TLHKDSGNMFENGCYLR--RQKRFKDDKKEVI 227
N EN L D ++EV+
Sbjct: 156 ------ANKGENTSLLHPVSLHGMDDPEREVL 181
>2w3t_A Peptide deformylase; protein biosynthesis, iron, nickel, hydrolase,
metal-binding; 1.69A {Escherichia coli} PDB: 2w3u_A
Length = 188
Score = 29.0 bits (66), Expect = 1.8
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 213 LRRQ---KRFKDDKKEVIRQTHHKSVSPTHHHPTHHHHHH 249
L++Q ++ + + R + SV HHHHHH
Sbjct: 149 LKQQRIRQKVEKLDRLKARAPNSSSVDKLAAALEHHHHHH 188
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type
glycosyltransferase, GT-81, mannosyl-3-phosphoglyc
synthase, GDP-mannose, transferas; 2.20A {Rubrobacter
xylanophilus} PDB: 3kia_A* 3o3p_A*
Length = 387
Score = 29.8 bits (66), Expect = 1.9
Identities = 19/101 (18%), Positives = 26/101 (25%), Gaps = 11/101 (10%)
Query: 244 HHHHHHSH----------HTHHNSHNTHSHQSHDAGGKKSPETKPHLSELAMLGLTKEDA 293
HHHHHHS T S D G + + M E
Sbjct: 2 HHHHHHSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSEFMSTYH-ERP 60
Query: 294 MSAGLLHSDFQQNSYHQSFHQQDSELAAMVASGRCHPHLIP 334
+ F+Q SY + G ++P
Sbjct: 61 LGPASAAEWFRQRSYDYGQFPPEDLARRKRELGLTVSAVLP 101
>2c9j_A Green fluorescent protein FP512; beta-barrel, bioluminescence,
luminescence, luminescent protein; HET: CRQ; 1.35A
{Cerianthus membranaceus}
Length = 223
Score = 29.1 bits (65), Expect = 2.2
Identities = 10/52 (19%), Positives = 14/52 (26%), Gaps = 1/52 (1%)
Query: 229 QTHHKSVSPTHHHP-THHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKPH 279
T ++S P H H T Q+ A KP+
Sbjct: 172 TTFYRSKKSGQPLPGFHFIKHRLVKTKVEPGFKMVEQAEYATAHVCDLPKPN 223
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 29.4 bits (67), Expect = 2.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 217 KRFKDDKKEV 226
+RFKDD EV
Sbjct: 459 RRFKDDVNEV 468
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface,
cell adhesion; 2.70A {Campylobacter jejuni subsp}
Length = 379
Score = 29.4 bits (65), Expect = 2.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 246 HHHHSHHTHHNSHNTHSHQSHDAGGKKSPET 276
HHHH HH HH+S + H G +T
Sbjct: 3 HHHHHHHHHHSSGHIDDDDKHMCGNSIDEKT 33
Score = 27.5 bits (60), Expect = 8.2
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 239 HHHPTHHHHHHSHH 252
HHH HHHHH S H
Sbjct: 3 HHHHHHHHHHSSGH 16
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane
protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU
DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A*
2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A*
1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A*
1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Length = 1057
Score = 29.4 bits (67), Expect = 2.8
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 228 RQTHHKSVSPTHHHPTHHHHHH 249
+ + HH HHHHHH
Sbjct: 1036 KNEDIEHSHTVDHHLEHHHHHH 1057
Score = 27.9 bits (63), Expect = 7.1
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 226 VIRQTHHKSVSPTHHHPTHHHHHHSHHTH 254
V R+ K+ H H HH H HH H
Sbjct: 1029 VRRRFSRKNEDIEHSHTVDHHLEHHHHHH 1057
>1ofw_A 9HCC, nine-heme cytochrome C; electron transport, multiheme
cytochrome C, electron transfer, electron transpor; HET:
HEC GOL; 1.5A {Desulfovibrio desulfuricans} SCOP:
a.138.1.1 PDB: 1ofy_A* 19hc_A* 1duw_A*
Length = 296
Score = 28.8 bits (62), Expect = 3.0
Identities = 13/106 (12%), Positives = 21/106 (19%), Gaps = 2/106 (1%)
Query: 236 SPTHHHPTHHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKPHLSELAMLGLTKEDAMS 295
+ + K P H L L +D
Sbjct: 154 DNEALAAETVLAQKTVEPVSPMLAPYKVVIDALADKYEPSNFTHRRHLTSLMERIKDDKL 213
Query: 296 AGLLHSDFQQNSYHQSFHQQDSELAAMVASGRCHPHLIPPDHYNHH 341
A H+ + + H + G CH I +
Sbjct: 214 AQAFHNKPEILC--ATCHHRSPLSLTPPKCGSCHTKEIDKANPGRP 257
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc
complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Length = 800
Score = 29.1 bits (64), Expect = 3.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 244 HHHHHHSHHTHHNSHNTHS 262
HHHHHH HH + N S
Sbjct: 4 HHHHHHHHHAGAGARNMAS 22
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription
regulator; 1.80A {Streptococcus mutans}
Length = 204
Score = 28.3 bits (63), Expect = 3.4
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 243 THHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKPHLSELAMLGLTKEDAMSAGLLHSD 302
+HHHHHHS + S G+ S + + +LG+ + S ++
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMQG-----KDIILGILSKKERSGYEINDI 58
Query: 303 FQQNS---YHQSFHQQDSELAAMVASG 326
Q Y ++ L + G
Sbjct: 59 LQNQLSYFYDGTYGMIYPTLRKLEKDG 85
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural
genomics, joint C structural genomics, JCSG, protein
structure initiative; 1.83A {Thermotoga maritima} SCOP:
c.55.5.1 PDB: 1t3v_A
Length = 136
Score = 28.0 bits (62), Expect = 3.4
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 242 PTHHHHHHSHH 252
H HHHH HH
Sbjct: 126 EVHDHHHHEHH 136
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium, two domain; 2.30A {Rhizobium etli}
Length = 330
Score = 28.5 bits (64), Expect = 3.5
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 244 HHHHHHSHHTHHNSHNTHSH 263
HHHHHHS + N +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQ 21
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Length = 405
Score = 28.6 bits (64), Expect = 3.7
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 211 CYLRRQKRFKDD--KKEVIRQTHHKSVSPTHHHPTHHHHHHS 250
Y K+ + K ++I++T HH HHHHHHS
Sbjct: 365 LYAESFKKASEHGFKPQIIKETQFPGDDDDKHH--HHHHHHS 404
>1d1d_A Protein (capsid protein); two independent domains helical bundles,
virus/viral protein; NMR {Rous sarcoma virus} SCOP:
a.28.3.1 a.73.1.1
Length = 262
Score = 28.6 bits (63), Expect = 4.1
Identities = 17/73 (23%), Positives = 21/73 (28%), Gaps = 25/73 (34%)
Query: 245 HHHHHSHHTHHNSHNTHSH----------QSHDA---------------GGKKSPETKPH 279
HHHHH HH H + H H + G +SP T
Sbjct: 2 HHHHHHHHHHSSGHIEGRHNMPVVIKTEGPAWTPLEPKLITRLADTVRTKGLRSPITMAE 61
Query: 280 LSELAMLGLTKED 292
+ L L D
Sbjct: 62 VEALMSSPLLPHD 74
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid;
transport protein, solute-binding protein; 2.26A
{Neisseria gonorrhoeae}
Length = 291
Score = 28.5 bits (64), Expect = 4.2
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 240 HHPTHHHHHHSHHTHHN 256
HH HHHHHHS +
Sbjct: 3 HHHHHHHHHHSSGHIDD 19
Score = 28.1 bits (63), Expect = 5.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 239 HHHPTHHHHHHSHHTHHNS 257
HHH HHHHH S H +
Sbjct: 3 HHHHHHHHHHSSGHIDDDD 21
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C
amphipathic-helix, apoptosis, HOST-virus interaction,
protein transport, transport; 2.02A {Homo sapiens} PDB:
2oew_A 3c3o_A 3c3q_A
Length = 380
Score = 28.7 bits (63), Expect = 4.3
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 244 HHHHHHSHHTHHNSHNTHSHQS 265
HHHHHH HH + H +
Sbjct: 2 HHHHHHHHHHSGQNLYFQGHMA 23
>3s6d_A Putative triosephosphate isomerase; seattle structural genomics
center for infectious disease, S pathogenic fungus,
eukaryote; 2.20A {Coccidioides immitis RS}
Length = 310
Score = 28.5 bits (64), Expect = 4.3
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 244 HHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKP 278
HHHHHH + S S AG + P K
Sbjct: 3 HHHHHHMGTLEAQTQGPGSMASALAGPRFPPLPKT 37
>3ajv_A Putative uncharacterized protein; ENDA, archaea crenarch hydrolase;
1.70A {Aeropyrum pernix} PDB: 3p1z_A
Length = 190
Score = 28.1 bits (62), Expect = 4.4
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 250 SHHTHHNSHNTHSHQSHDAGGKKSPETKPHLSELAMLGLTKEDAMSAGLLHS 301
SHH HH+S SH G+ + L + G+ E+ +
Sbjct: 4 SHHHHHHSSGLVPRGSHMGKGEGEVAGCKAAARLGVEGVFVEECFDGSYCRN 55
>2q4a_A Clavaminate synthase-like protein AT3G21360; ensemble refinement,
refinement methodology development, AT3 structural
genomics; 2.39A {Arabidopsis thaliana} SCOP: b.82.2.8
PDB: 1y0z_A
Length = 330
Score = 28.4 bits (62), Expect = 5.1
Identities = 14/191 (7%), Positives = 42/191 (21%), Gaps = 14/191 (7%)
Query: 75 AACMGGINSYNTALTTGRAELAENSPSPGALQRVARADKTYRRSYTHAKPPYSYISLITM 134
G R + + + + + P +
Sbjct: 81 VEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPFHHEMAQVREFPSKLFFYCEIE 140
Query: 135 AIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKG 194
T ++ +Y+ + D P + Q + L +D
Sbjct: 141 PKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRVLGEDD--------------D 186
Query: 195 SFWTLHKDSGNMFENGCYLRRQKRFKDDKKEVIRQTHHKSVSPTHHHPTHHHHHHSHHTH 254
+ + + F ++R D ++ + + P + +
Sbjct: 187 PSSPIGRGWKSTFLTHDKNLAEQRAVDLGMKLEWTEDGGAKTVMGPIPAIKYDESRNRKV 246
Query: 255 HNSHNTHSHQS 265
+ ++
Sbjct: 247 WFNSMVAAYTG 257
>2fgg_A Hypothetical protein RV2632C/MT2708; TB target, structural
genomics, PSI, protein struct initiative, TB structural
genomics consortium; 2.30A {Mycobacterium tuberculosis}
SCOP: d.50.5.1
Length = 101
Score = 26.7 bits (59), Expect = 5.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 227 IRQTHHKSVSPTHHHPTHHHHH 248
I + H+ V+ HH HHHHH
Sbjct: 80 IEASTHQPVTGLHHRSHHHHHH 101
Score = 26.0 bits (57), Expect = 9.4
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 240 HHPTHHHHHHSHHTHHN 256
H P HH SHH HH+
Sbjct: 85 HQPVTGLHHRSHHHHHH 101
>3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase,
gibberellin signaling pathway, hydrolase, nucleus,
hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp}
PDB: 3ed1_A*
Length = 365
Score = 28.1 bits (63), Expect = 5.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 239 HHHPTHHHHHHSHH 252
++ HHHHHH HH
Sbjct: 352 YYGSHHHHHHHHHH 365
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A
{Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A*
3plr_A*
Length = 432
Score = 28.3 bits (64), Expect = 5.6
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 243 THHHHHHSHHTHHNSHN 259
+HHHHHHS +
Sbjct: 4 SHHHHHHSSGLVPRGSH 20
>4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural
genomics, lyase; 1.70A {Actinobacillus succinogenes}
PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A*
1jct_A* 3pwg_A* 1bqg_A
Length = 464
Score = 28.2 bits (63), Expect = 5.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 244 HHHHHHS 250
HHHHHHS
Sbjct: 2 HHHHHHS 8
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich,
hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB:
1u7q_A 2a00_A* 2a29_A*
Length = 156
Score = 27.5 bits (61), Expect = 5.9
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 244 HHHHHHSHHT 253
HHHHHH HH+
Sbjct: 4 HHHHHHHHHS 13
Score = 27.1 bits (60), Expect = 6.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 240 HHPTHHHHHHS 250
HH HHHHHHS
Sbjct: 3 HHHHHHHHHHS 13
Score = 27.1 bits (60), Expect = 8.2
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 5/17 (29%)
Query: 244 HHHHHHSHHTHHNSHNT 260
HHHHHH HH H++
Sbjct: 3 HHHHHHHHH-----HSS 14
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati
nucleus, phosphoprotein, spinocerebellar ataxia,
transcript transcription regulation; NMR {Homo sapiens}
Length = 52
Score = 25.6 bits (55), Expect = 6.5
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 207 FENGCYLRRQKRFKDDKKEVIRQTHHKSVSPTHHHPTHHHHHH 249
+ L RQ+ +D++ +R+ S+ + + HHHHHH
Sbjct: 10 LQRALALSRQEIDMEDEEADLRRAIQLSMQGSSRNLEHHHHHH 52
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer,
structural genomics; HET: PLP; 1.50A {Mycobacterium
tuberculosis} PDB: 3vom_A*
Length = 398
Score = 28.0 bits (63), Expect = 6.7
Identities = 9/35 (25%), Positives = 10/35 (28%)
Query: 244 HHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKP 278
HHHHHH T + KP
Sbjct: 5 HHHHHHLESTSLYKKAGFMADQLTPHLEIPTAIKP 39
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 26.6 bits (59), Expect = 6.9
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 244 HHHHHHSHHTHHNSHNTHSHQSH 266
HHHHHHS + N + H
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMH 24
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function,
PSI-2, protein structure initiative; 2.20A
{Archaeoglobus fulgidus} SCOP: c.116.1.8
Length = 178
Score = 27.4 bits (61), Expect = 7.1
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 217 KRFKDDKKEVIRQTHHKSVSPTHHHPTHHHHHH 249
F D K +VI K V HHHHHH
Sbjct: 149 ISFDDAKIKVIPSERGKRVVS---EEGHHHHHH 178
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B),
lyase; 1.16A {Geobacillus pallidus} PDB: 2dpp_A 1v29_A
Length = 216
Score = 27.3 bits (60), Expect = 7.4
Identities = 2/18 (11%), Positives = 5/18 (27%)
Query: 241 HPTHHHHHHSHHTHHNSH 258
+ + HH+
Sbjct: 3 IGQKNTNIDPRFPHHHPR 20
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 26.3 bits (58), Expect = 7.6
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 244 HHHHHHSHHTHHNSHNTHSH 263
HHHHHHS + N +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQ 21
>2bbz_A Viral CAsp8 and FADD-like apoptosis regulator; death effector
domain, viral protein; 3.80A {Molluscum contagiosum
virus subtype 1}
Length = 249
Score = 27.4 bits (60), Expect = 7.7
Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 202 DSGNMFENGCYLRRQKRFKDDKKEVIR--QTHHKSVSPTHHHPTHHHHHH 249
G+ L + D E++R S SP HHHHHH
Sbjct: 200 RRGHGASEHEQLCMPVQESSDSPELLRTPVQESSSDSPEQTTLEHHHHHH 249
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 27.8 bits (62), Expect = 7.7
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 243 THHHHHHSHHT-HHNSHNTHSHQSHDAGGKKSPETKPHLSELAMLGLTKEDAMSAGLLHS 301
+HHHHHHS SH G S + L E A+L E A G L
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRVLSDDELTGLDEFALLAENAEQAGVNGPLPE 63
Query: 302 DF 303
Sbjct: 64 VE 65
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A
{Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*
Length = 435
Score = 27.8 bits (62), Expect = 7.9
Identities = 6/21 (28%), Positives = 7/21 (33%), Gaps = 2/21 (9%)
Query: 248 HHSHHT--HHNSHNTHSHQSH 266
T HN +S Q H
Sbjct: 283 VCDTRTWLEHNKGFCNSRQLH 303
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 7.9
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 23/100 (23%)
Query: 15 GMTPSYSMNSVINSCSPQSGST-GTPLGGFSS--NMHS--------------MGSINGM- 56
G+T Y M ++ + G+ G+ +GG S+ M IN M
Sbjct: 1028 GITDPYEMYKYVHVS--EVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMS 1085
Query: 57 NGPNCMSTGSMGYSSNMNAACMGGINSYNTALTT---GRA 93
N + S G AC + S + + T G+A
Sbjct: 1086 AWVNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKA 1125
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
kinase domain, signaling protein, transferase, inner
membrane, membrane; 2.50A {Escherichia coli}
Length = 299
Score = 27.7 bits (62), Expect = 8.0
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 244 HHHHHHSHHT 253
HHHHHH HH+
Sbjct: 4 HHHHHHHHHS 13
Score = 27.3 bits (61), Expect = 8.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 240 HHPTHHHHHHS 250
HH HHHHHHS
Sbjct: 3 HHHHHHHHHHS 13
>1usu_B AHA1; chaperone/complex, chaperone, activator, HSP90; 2.15A
{Saccharomyces cerevisiae} SCOP: d.83.2.1 PDB: 1usv_B
Length = 170
Score = 27.2 bits (60), Expect = 8.2
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 243 THHHHHHSHHTH--HNSHNTH 261
+HHHHHH + +N +N H
Sbjct: 4 SHHHHHHGMASMVVNNPNNWH 24
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU
proteins, viral protein,transferase; 2.31A {Paramecium
bursaria chlorella virus NY} PDB: 3oy7_A*
Length = 413
Score = 27.5 bits (60), Expect = 9.1
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 224 KEVIRQTHHKSVSPTHHHPTHHHHHH 249
++R ++ H HHHHHH
Sbjct: 388 NSLLRVESRETPGNEEHPLEHHHHHH 413
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase;
HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A*
Length = 344
Score = 27.2 bits (61), Expect = 9.4
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 239 HHHPTHHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETK 277
HHH HHHH H + H + G +
Sbjct: 3 HHHHHHHHHSSGHIDDDDKHMLEASAKATMGQGEQDHFV 41
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 27.5 bits (62), Expect = 9.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 239 HHHPTHHHHHHSH 251
HH PT +HHHH H
Sbjct: 487 HHLPTSNHHHHHH 499
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, S
structural genomics center for infectious disease,
ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei
1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A*
Length = 196
Score = 26.9 bits (60), Expect = 9.4
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 244 HHHHHHSHHTHHNSHNTHSHQSHD-AGGKKSPE 275
HHHHHH + S + GK P+
Sbjct: 3 HHHHHHMGTLEAQTQGPGSMSFSNVPAGKDLPQ 35
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation,
cleavage of beta-1, 4-D-galactose linkages; HET: SO4;
1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB:
1urx_A*
Length = 288
Score = 27.3 bits (60), Expect = 9.6
Identities = 5/39 (12%), Positives = 10/39 (25%)
Query: 225 EVIRQTHHKSVSPTHHHPTHHHHHHSHHTHHNSHNTHSH 263
E + H +HH + T + +
Sbjct: 136 EGYGSDRGGTWFAQRMHLSHHTFIRNPFTDYQPMGDATW 174
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde
dehyd adduct, covalent catalysis, mandelate racemase
pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB:
3lv1_A*
Length = 457
Score = 27.3 bits (61), Expect = 9.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 245 HHHHHSHHTHHNSHNTHSHQS 265
HHHHH HH H + H +
Sbjct: 1 HHHHHHHHHHSSGHIDDDDKH 21
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 27.4 bits (60), Expect = 9.9
Identities = 20/154 (12%), Positives = 32/154 (20%), Gaps = 6/154 (3%)
Query: 243 THHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETKPHLSELAMLGLTKEDAMSAGLLHSD 302
HHHHHH + G+ S L S G LHS
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGP------GIGSPGQLHSP 55
Query: 303 FQQNSYHQSFHQQDSELAAMVASGRCHPHLIPPDHYNHHLKQEYGASAVNHPFPVSRLLP 362
S + + + P + + P
Sbjct: 56 ISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPP 115
Query: 363 SASAMSAAMAMSADSAKSIDLCKMYEMTGGYSTG 396
+ + + + G S+G
Sbjct: 116 LGLNGVLKVPAHPSGNMASFTKHICAICGDRSSG 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.126 0.383
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,521,837
Number of extensions: 399368
Number of successful extensions: 6027
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5607
Number of HSP's successfully gapped: 208
Length of query: 417
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 321
Effective length of database: 4,021,377
Effective search space: 1290862017
Effective search space used: 1290862017
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.3 bits)