RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy447
(417 letters)
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 97
Score = 157 bits (399), Expect = 3e-48
Identities = 62/96 (64%), Positives = 75/96 (78%)
Query: 123 KPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 182
KPPYSYI+LITMAI SP K LTLS I +FI + FP+YR+ WQNSIRH+LS NDCFV
Sbjct: 2 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61
Query: 183 KVPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKR 218
K+PR P PGKG++WTL S +MF+NG +LRR+KR
Sbjct: 62 KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 155 bits (392), Expect = 3e-47
Identities = 46/96 (47%), Positives = 61/96 (63%)
Query: 123 KPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 182
KPPYSY LI AI +P K LTL+ IY I +P+YR + WQNSIRH+LS N F+
Sbjct: 3 KPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFI 62
Query: 183 KVPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKR 218
KVPR+ ++PGKGSFW + S + + +R+ R
Sbjct: 63 KVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 98
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12,
fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 151 bits (382), Expect = 8e-46
Identities = 68/92 (73%), Positives = 78/92 (84%)
Query: 122 AKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCF 181
KPPYSYI+LITMAIQN+P K +TL+ IYQFIMD FPFYR+N+Q WQNSIRH+LS N+CF
Sbjct: 3 VKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECF 62
Query: 182 VKVPRTPDKPGKGSFWTLHKDSGNMFENGCYL 213
VKVPR KPGKGS+WTL DS NMFENG +L
Sbjct: 63 VKVPRDDKKPGKGSYWTLDPDSYNMFENGSFL 94
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 125 bits (316), Expect = 3e-36
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 123 KPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 182
+PP++Y +LI AI S + LTL+EIY + F ++R+N W+N++RH+LS + CFV
Sbjct: 2 RPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFV 61
Query: 183 KVPRTPDKPGKGSFWTLHKDS 203
+V KG+ WT+ +
Sbjct: 62 RVEN-----VKGAVWTVDEVE 77
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 75
Score = 118 bits (297), Expect = 1e-33
Identities = 40/74 (54%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 128 YISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRT 187
YI+LITMAI++S LTL+EI +++M FPF+R + W+NS+RH+LS NDCFVKV R
Sbjct: 1 YIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRD 60
Query: 188 PDKP-GKGSFWTLH 200
P +P GK ++W L+
Sbjct: 61 PSRPWGKDNYWMLN 74
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 118 bits (296), Expect = 2e-33
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 7/85 (8%)
Query: 121 HAKPPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLFPFYRQNQQR-----WQNSIRHSL 175
+A SY LI+ AI+++P K LTL++IY++++ P+++ W+NSIRH+L
Sbjct: 3 NAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNL 62
Query: 176 SFNDCFVKVPRTPDKPGKGSFWTLH 200
S + F+KV + GK S+W L+
Sbjct: 63 SLHSKFIKVHN--EATGKSSWWMLN 85
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus
halodenitrificans [TaxId: 1482]}
Length = 149
Score = 30.8 bits (69), Expect = 0.15
Identities = 15/105 (14%), Positives = 30/105 (28%), Gaps = 4/105 (3%)
Query: 217 KRFKDDKKEVIRQTHHKSVSPTHHHPTHHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPET 276
KRF+ ++ K + + H+ +
Sbjct: 23 KRFESKGLKLAGA---KLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGLN 79
Query: 277 KPHLSELAMLGLTKEDAMSAGLLHSDFQQNSYHQSFHQQDSELAA 321
+ +LG T + G + DF ++ + H DS +A
Sbjct: 80 AAATAR-QILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSAGSA 123
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Dictyostelium discoideum [TaxId: 44689]}
Length = 150
Score = 30.4 bits (68), Expect = 0.19
Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Query: 217 KRFKDDKKEVIRQTHHKSVSPTHHHPTHHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPET 276
R++ ++ K + PT H+ H + S
Sbjct: 25 ARYEKKGFVLVGL---KQLVPTKDLAESHYAEHKERPFFGGLVSFIT-SGPVVAMVFEGK 80
Query: 277 KPHLSELAMLGLTKEDAMSAGLLHSDFQQNSYHQSFHQQDSELAA 321
S M+G+T A + G + DF + DS +A
Sbjct: 81 GVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIAGSDSVESA 125
>d1sg6a_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Aspergillus
nidulans [TaxId: 162425]}
Length = 389
Score = 30.0 bits (66), Expect = 0.54
Identities = 9/143 (6%), Positives = 28/143 (19%), Gaps = 3/143 (2%)
Query: 124 PPYSYISLITMAIQNSPTKMLTLSEIYQFIMDLF--PFYRQNQQRWQNSIRHSLSFNDCF 181
+ I + + + ++ R+ I+ + ++
Sbjct: 144 SSIGGKTAIDTPLGKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEE 203
Query: 182 VKVPRT-PDKPGKGSFWTLHKDSGNMFENGCYLRRQKRFKDDKKEVIRQTHHKSVSPTHH 240
+ K + L+ + K + + +
Sbjct: 204 FTALEENAETILKAVRREVTPGEHRFEGTEEILKARILASARHKAYVVSADEREGGLRNL 263
Query: 241 HPTHHHHHHSHHTHHNSHNTHSH 263
H H+ H
Sbjct: 264 LNWGHSIGHAIEAILTPQILHGE 286
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea
(Pisum sativum) [TaxId: 3888]}
Length = 151
Score = 28.4 bits (63), Expect = 0.88
Identities = 16/105 (15%), Positives = 26/105 (24%), Gaps = 4/105 (3%)
Query: 217 KRFKDDKKEVIRQTHHKSVSPTHHHPTHHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPET 276
RF+ +++ K + PT H+H N S
Sbjct: 25 SRFERKGFKLVGI---KVLIPTKQFAQQHYHDLKERPFFNGLCDFLS-SGPVIAMVWEGE 80
Query: 277 KPHLSELAMLGLTKEDAMSAGLLHSDFQQNSYHQSFHQQDSELAA 321
++G T + G + D H D A
Sbjct: 81 GVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSDGPETA 125
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human
(Homo sapiens), NDK4 [TaxId: 9606]}
Length = 143
Score = 28.5 bits (63), Expect = 0.90
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 4/105 (3%)
Query: 217 KRFKDDKKEVIRQTHHKSVSPTHHHPTHHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPET 276
+RF+ ++ K + H+ + + + S
Sbjct: 27 QRFERRGFTLVGM---KMLQAPESVLAEHYQDLRRKPFYPALIRYMS-SGPVVAMVWEGY 82
Query: 277 KPHLSELAMLGLTKEDAMSAGLLHSDFQQNSYHQSFHQQDSELAA 321
+ AM+G T + G + DF + H DS A
Sbjct: 83 NVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGA 127
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK
{Archaeon Halobacterium salinarum [TaxId: 2242]}
Length = 152
Score = 28.1 bits (62), Expect = 1.2
Identities = 13/103 (12%), Positives = 31/103 (30%), Gaps = 6/103 (5%)
Query: 217 KRFKDDKKEVIRQTHHKSVSPTHHHPTHHHHHHSHHTHHNSHNTHSHQS-HDAGGKKSPE 275
R + +++ K + H+ H + + A + +
Sbjct: 24 TRLETKGLKMVGG---KFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEGAD 80
Query: 276 TKPHLSELAMLGLTKEDAMSAGLLHSDFQQNSYHQSFHQQDSE 318
+ + ++G T + G + D+ + H H D E
Sbjct: 81 ATRQVRQ--LMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHE 121
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 27.5 bits (60), Expect = 2.6
Identities = 8/115 (6%), Positives = 27/115 (23%), Gaps = 11/115 (9%)
Query: 195 SFWTLHKDSGNMFENGCYLRRQKRFKDDKKEVIRQTHHKSVSPTHHHPTHHHHHHSHHT- 253
+ D+ + + ++K +R + + + + +
Sbjct: 44 TTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGG 103
Query: 254 ----------HHNSHNTHSHQSHDAGGKKSPETKPHLSELAMLGLTKEDAMSAGL 298
+ A G S L + + ++A+ +
Sbjct: 104 IDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAV 158
>d1pq4a_ c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 289
Score = 27.2 bits (59), Expect = 4.1
Identities = 15/120 (12%), Positives = 31/120 (25%), Gaps = 3/120 (2%)
Query: 204 GNMFENGCYLRRQKRFKDDKK-EVIRQTHHKSVSPTHHHPTHHHHHHSHHTHHNSHNTHS 262
G FE + + + K + + + H H H + H + S
Sbjct: 59 GLGFEQPWLEKLKAANANMKLIDSAQGITPLEMEKHDHSHGEEEGHDDHSHDGHDHGSES 118
Query: 263 HQSHDAGGKKSPETKPHLSELAMLGLTKEDAMSAGLLHSDFQQNSYHQSFHQQDSELAAM 322
+ G + LS L + ++ L D +++
Sbjct: 119 EKEKAKGALMVADPHIWLS--PTLVKRQATTIAKELAELDPDNRDQYEANLAAFLAELER 176
>d1f44a2 d.163.1.1 (A:130-343) Cre recombinase {Bacteriophage P1
[TaxId: 10678]}
Length = 214
Score = 26.8 bits (57), Expect = 4.9
Identities = 8/128 (6%), Positives = 17/128 (13%)
Query: 149 IYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLHKDSGNMFE 208
+ I S+ + D
Sbjct: 64 MLIHIGRTKTLVSTAGVEKALSLGVTKLVERWISVSGVADDPNNYLFCRVRKNGVAAPSA 123
Query: 209 NGCYLRRQKRFKDDKKEVIRQTHHKSVSPTHHHPTHHHHHHSHHTHHNSHNTHSHQSHDA 268
R + + + + H + A
Sbjct: 124 TSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARVGAARDMARAGVSIPEIMQA 183
Query: 269 GGKKSPET 276
GG +
Sbjct: 184 GGWTNVNI 191
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia
coli [TaxId: 562]}
Length = 235
Score = 26.7 bits (58), Expect = 5.0
Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 4/122 (3%)
Query: 158 PFYRQNQQRWQNSIRHSLSFNDCFVKVPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQK 217
+R W+ ++ + F + P L + L + +
Sbjct: 19 RTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQ 78
Query: 218 RFKDDKKEVIRQTHHKSVSPTHHHPTHHHHHHSHHTHHNSHNTHSHQSHDAGGKKSPETK 277
D+ ++ Q H + + H H + S Q D G +PE K
Sbjct: 79 DALGDRFLLVTQNID----NLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTGDVTPEDK 134
Query: 278 PH 279
H
Sbjct: 135 CH 136
>d1oyga_ b.67.2.2 (A:) Levansucrase {Bacillus subtilis [TaxId:
1423]}
Length = 440
Score = 26.6 bits (58), Expect = 5.7
Identities = 2/21 (9%), Positives = 6/21 (28%)
Query: 236 SPTHHHPTHHHHHHSHHTHHN 256
P + T + + +
Sbjct: 79 DPKNADDTSIYMFYQKVGETS 99
>d2i5ia1 c.6.2.8 (A:2-262) Uncharacterized protein EF3048
{Enterococcus faecalis [TaxId: 1351]}
Length = 261
Score = 26.6 bits (58), Expect = 6.3
Identities = 8/52 (15%), Positives = 14/52 (26%), Gaps = 1/52 (1%)
Query: 202 DSGNMFENGCYLRRQKRFKDDKKEVIRQTHH-KSVSPTHHHPTHHHHHHSHH 252
D F + + ++ E Q H HH+ H +
Sbjct: 84 DEAGYFWHQSIFEEKVNLEEVYNEWDAQIISFMKSGRRPDHIDSHHNVHGKN 135
>d1cyga1 b.1.18.2 (A:492-574) Cyclomaltodextrin
glycanotransferase, domain D {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 83
Score = 25.0 bits (54), Expect = 6.3
Identities = 4/40 (10%), Positives = 7/40 (17%)
Query: 25 VINSCSPQSGSTGTPLGGFSSNMHSMGSINGMNGPNCMST 64
+I P G G + +
Sbjct: 5 IIGHVGPMMGQVGHQVTIDGEGFGTNTGTVKFGTTAANVV 44
>d1xr4a1 c.124.1.2 (A:1-236) Putative citrate lyase alpha chain,
citF2 {Salmonella typhimurium [TaxId: 90371]}
Length = 236
Score = 26.2 bits (58), Expect = 7.0
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 50 MGSINGMNGPNCMSTGSMGYS 70
G+ NG +G + GS+GY+
Sbjct: 169 FGNANGFSGKSR--CGSLGYA 187
>d1fgja_ a.138.1.3 (A:) Hydroxylamine oxidoreductase, HAO
{Nitrosomonas europaea [TaxId: 915]}
Length = 499
Score = 26.5 bits (57), Expect = 7.8
Identities = 11/79 (13%), Positives = 24/79 (30%)
Query: 263 HQSHDAGGKKSPETKPHLSELAMLGLTKEDAMSAGLLHSDFQQNSYHQSFHQQDSELAAM 322
H ++ + H + + L +D + + +N+ + E
Sbjct: 83 HSDETPVWVRAWKRSTHANLDKIRNLKSDDPLYYKKGKLEEVENNLRSMGKLGEKETLKE 142
Query: 323 VASGRCHPHLIPPDHYNHH 341
V CH + D +H
Sbjct: 143 VGCIDCHVDVNKKDKADHT 161
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal
domain {Clostridium acetobutylicum [TaxId: 1488]}
Length = 141
Score = 25.4 bits (55), Expect = 8.3
Identities = 6/55 (10%), Positives = 14/55 (25%)
Query: 213 LRRQKRFKDDKKEVIRQTHHKSVSPTHHHPTHHHHHHSHHTHHNSHNTHSHQSHD 267
+RR +R K K+++ + H + +
Sbjct: 25 IRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE 79
>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase
{Thermobifida fusca [TaxId: 2021]}
Length = 235
Score = 25.9 bits (55), Expect = 8.5
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 16/93 (17%)
Query: 184 VPRTPDKPGKGSFWTLHKDSGNMFENGCYLRRQKRFKDDKKEVI----------RQTHHK 233
VP+ P+ PG F +GN++ G + F + VI Q +
Sbjct: 1 VPQLPNFPGLKDF------AGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQ 54
Query: 234 SVSPTHHHPTHHHHHHSHHTHHNSHNTHSHQSH 266
+ T H + + + +
Sbjct: 55 AAELFVFQRTPHFAVPARNAPLDPEFLADLKKR 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.126 0.383
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,531,717
Number of extensions: 68612
Number of successful extensions: 551
Number of sequences better than 10.0: 1
Number of HSP's gapped: 523
Number of HSP's successfully gapped: 60
Length of query: 417
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 329
Effective length of database: 1,199,356
Effective search space: 394588124
Effective search space used: 394588124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)