Query psy4474
Match_columns 2174
No_of_seqs 408 out of 1754
Neff 10.1
Searched_HMMs 46136
Date Fri Aug 16 18:00:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0517|consensus 100.0 2E-122 5E-127 1144.9 180.7 1762 20-2147 599-2430(2473)
2 KOG0517|consensus 100.0 1E-116 3E-121 1093.3 194.4 1839 55-2145 298-2228(2473)
3 KOG0040|consensus 100.0 5E-111 1E-115 1019.4 174.7 1835 20-2122 13-2008(2399)
4 KOG0040|consensus 100.0 1.9E-94 4.2E-99 875.6 159.5 1683 169-2146 11-1821(2399)
5 cd00176 SPEC Spectrin repeats, 99.6 7.3E-14 1.6E-18 161.2 23.3 210 1376-1593 2-212 (213)
6 cd00176 SPEC Spectrin repeats, 99.5 1.6E-12 3.4E-17 150.1 24.7 208 451-659 2-212 (213)
7 KOG4286|consensus 99.2 2.9E-09 6.3E-14 127.1 28.0 303 1376-1696 3-335 (966)
8 KOG4286|consensus 99.2 6.5E-09 1.4E-13 124.2 30.1 306 452-796 4-336 (966)
9 PF00435 Spectrin: Spectrin re 98.8 3.5E-08 7.7E-13 98.4 13.5 104 1375-1480 2-105 (105)
10 PF00435 Spectrin: Spectrin re 98.8 5.7E-08 1.2E-12 96.9 13.8 103 947-1049 2-105 (105)
11 smart00150 SPEC Spectrin repea 98.8 3.7E-08 8E-13 97.4 11.4 99 950-1048 2-101 (101)
12 smart00150 SPEC Spectrin repea 98.8 4.6E-08 1E-12 96.7 11.2 100 1378-1479 2-101 (101)
13 TIGR00606 rad50 rad50. This fa 98.5 0.044 9.5E-07 79.9 112.2 70 1562-1634 911-982 (1311)
14 PF12128 DUF3584: Protein of u 98.4 0.059 1.3E-06 77.4 77.4 57 2062-2119 992-1053(1201)
15 KOG4674|consensus 98.1 0.19 4.1E-06 70.6 158.3 80 978-1057 521-605 (1822)
16 TIGR00606 rad50 rad50. This fa 98.0 0.33 7.2E-06 71.0 114.7 85 914-998 573-658 (1311)
17 KOG0994|consensus 97.9 0.22 4.9E-06 64.5 52.1 95 1145-1244 1197-1291(1758)
18 KOG0161|consensus 97.8 0.54 1.2E-05 67.7 130.6 51 1217-1267 1657-1707(1930)
19 PF12128 DUF3584: Protein of u 97.7 0.74 1.6E-05 66.5 84.9 133 916-1053 712-859 (1201)
20 KOG0994|consensus 97.6 0.54 1.2E-05 61.2 58.3 93 244-339 1199-1291(1758)
21 KOG0161|consensus 97.3 2.2 4.8E-05 61.8 134.0 242 1452-1722 1566-1819(1930)
22 KOG4674|consensus 97.3 2.1 4.5E-05 60.8 164.4 151 1223-1399 801-951 (1822)
23 PRK04778 septation ring format 96.8 3.3 7.1E-05 54.7 46.7 70 1195-1266 231-300 (569)
24 PRK04863 mukB cell division pr 96.6 7.6 0.00016 56.4 103.1 63 978-1040 896-958 (1486)
25 PF06160 EzrA: Septation ring 96.0 9 0.00019 50.4 46.5 49 1218-1266 384-432 (560)
26 PRK03918 chromosome segregatio 95.8 16 0.00034 52.2 65.8 18 974-991 823-840 (880)
27 PRK02224 chromosome segregatio 95.8 16 0.00036 51.9 74.7 44 632-675 508-551 (880)
28 PF06160 EzrA: Septation ring 94.3 25 0.00055 46.3 54.6 97 494-602 107-206 (560)
29 TIGR02169 SMC_prok_A chromosom 94.2 49 0.0011 49.2 80.1 16 1455-1470 709-724 (1164)
30 TIGR02169 SMC_prok_A chromosom 94.0 54 0.0012 48.8 80.5 10 907-916 30-39 (1164)
31 PF13514 AAA_27: AAA domain 93.9 49 0.0011 48.1 86.6 39 270-308 239-277 (1111)
32 PRK02224 chromosome segregatio 93.9 45 0.00097 47.5 79.7 46 1454-1499 508-553 (880)
33 PRK04778 septation ring format 93.7 34 0.00073 45.4 54.4 65 1011-1075 463-530 (569)
34 PRK04863 mukB cell division pr 93.6 56 0.0012 47.9 105.9 60 1449-1508 986-1045(1486)
35 PF13514 AAA_27: AAA domain 93.5 56 0.0012 47.5 83.8 35 1174-1208 243-277 (1111)
36 PRK03918 chromosome segregatio 93.1 58 0.0012 46.5 70.9 18 35-52 139-156 (880)
37 KOG4240|consensus 93.1 46 0.001 45.3 30.3 169 1438-1616 231-401 (1025)
38 COG1196 Smc Chromosome segrega 92.0 86 0.0019 45.9 86.9 57 1452-1508 974-1031(1163)
39 KOG4240|consensus 90.6 83 0.0018 43.0 33.7 157 1342-1505 244-402 (1025)
40 PF08580 KAR9: Yeast cortical 90.5 76 0.0017 42.5 29.4 120 412-538 233-358 (683)
41 PF06008 Laminin_I: Laminin Do 90.4 43 0.00093 39.5 25.3 229 1564-1811 21-250 (264)
42 PF06008 Laminin_I: Laminin Do 90.1 46 0.00099 39.2 26.1 84 1021-1104 56-143 (264)
43 KOG0996|consensus 88.8 1.1E+02 0.0024 42.0 74.1 24 1485-1508 1137-1160(1293)
44 KOG0971|consensus 88.3 1E+02 0.0022 40.8 71.7 95 988-1086 464-566 (1243)
45 KOG0933|consensus 87.5 1.2E+02 0.0026 40.8 61.0 41 1770-1810 465-505 (1174)
46 COG0497 RecN ATPase involved i 83.9 1.4E+02 0.0031 38.4 24.6 31 319-349 259-289 (557)
47 KOG4673|consensus 83.0 1.5E+02 0.0032 37.9 56.2 75 1180-1255 605-679 (961)
48 PF08580 KAR9: Yeast cortical 81.7 2E+02 0.0044 38.6 31.8 57 1342-1399 238-294 (683)
49 PF10174 Cast: RIM-binding pro 81.0 2.2E+02 0.0049 38.7 73.5 27 1023-1049 471-497 (775)
50 PF04912 Dynamitin: Dynamitin 79.8 1.7E+02 0.0038 36.6 23.0 56 1410-1467 89-144 (388)
51 PF04912 Dynamitin: Dynamitin 77.6 2E+02 0.0043 36.1 24.2 57 1174-1232 88-144 (388)
52 KOG4673|consensus 77.0 2.3E+02 0.0049 36.4 57.2 118 1562-1689 546-671 (961)
53 PF10174 Cast: RIM-binding pro 76.2 3E+02 0.0066 37.5 73.9 24 1026-1049 282-305 (775)
54 PF14643 DUF4455: Domain of un 75.8 2.5E+02 0.0054 36.3 49.4 92 1402-1497 198-289 (473)
55 PF04849 HAP1_N: HAP1 N-termin 73.8 1.9E+02 0.0042 34.0 20.6 39 1953-1991 162-200 (306)
56 COG0497 RecN ATPase involved i 73.4 2.8E+02 0.0062 35.8 23.8 30 918-947 157-186 (557)
57 PF14662 CCDC155: Coiled-coil 67.8 1.8E+02 0.004 31.4 15.8 63 1771-1833 47-109 (193)
58 TIGR03185 DNA_S_dndD DNA sulfu 67.5 4.5E+02 0.0098 35.8 32.5 40 1354-1393 317-356 (650)
59 TIGR02168 SMC_prok_B chromosom 65.3 6.9E+02 0.015 37.1 90.1 14 1025-1038 1001-1014(1179)
60 COG1196 Smc Chromosome segrega 64.4 6.9E+02 0.015 36.8 89.1 30 277-306 257-286 (1163)
61 smart00787 Spc7 Spc7 kinetocho 59.9 3.8E+02 0.0082 32.3 26.3 63 411-473 201-263 (312)
62 PF15450 DUF4631: Domain of un 59.8 4.6E+02 0.0099 33.2 48.6 88 1631-1718 50-145 (531)
63 PF00261 Tropomyosin: Tropomyo 59.1 3.3E+02 0.0072 31.4 29.1 47 916-969 6-52 (237)
64 PF01576 Myosin_tail_1: Myosin 58.0 3.6 7.8E-05 56.8 0.3 44 1786-1829 632-675 (859)
65 KOG4302|consensus 56.9 6.1E+02 0.013 33.7 34.3 44 1224-1267 100-143 (660)
66 PF14643 DUF4455: Domain of un 53.0 6.3E+02 0.014 32.7 51.2 90 1168-1266 199-293 (473)
67 PF12325 TMF_TATA_bd: TATA ele 52.3 2.6E+02 0.0056 28.1 11.8 76 268-343 11-103 (120)
68 PF00261 Tropomyosin: Tropomyo 51.5 4.4E+02 0.0095 30.4 28.9 25 173-197 6-30 (237)
69 TIGR00634 recN DNA repair prot 50.9 7.5E+02 0.016 33.0 25.0 66 916-991 159-224 (563)
70 PRK09039 hypothetical protein; 49.6 3.9E+02 0.0085 32.8 15.7 157 1860-2040 44-206 (343)
71 PF12325 TMF_TATA_bd: TATA ele 49.5 2.6E+02 0.0056 28.2 11.3 76 975-1050 12-101 (120)
72 TIGR03185 DNA_S_dndD DNA sulfu 49.3 8.5E+02 0.018 33.2 34.7 45 1151-1196 400-444 (650)
73 PF10498 IFT57: Intra-flagella 49.3 3.7E+02 0.008 33.1 15.2 76 2001-2079 277-352 (359)
74 PF11802 CENP-K: Centromere-as 48.2 4.9E+02 0.011 30.1 16.6 91 485-579 56-146 (268)
75 PF14662 CCDC155: Coiled-coil 47.3 4.1E+02 0.0089 28.9 19.7 95 2059-2169 85-190 (193)
76 PF13949 ALIX_LYPXL_bnd: ALIX 46.9 5.8E+02 0.013 30.6 28.6 34 1410-1443 195-232 (296)
77 PF05557 MAD: Mitotic checkpoi 46.1 71 0.0015 44.0 9.7 29 649-677 618-647 (722)
78 cd07660 BAR_Arfaptin The Bin/A 46.0 4.6E+02 0.0099 29.1 14.4 169 26-215 11-183 (201)
79 PF08429 PLU-1: PLU-1-like pro 45.7 2.7E+02 0.0059 34.2 14.0 43 558-601 108-150 (335)
80 COG1340 Uncharacterized archae 44.8 5.8E+02 0.013 30.0 22.7 199 1562-1805 50-249 (294)
81 PRK01156 chromosome segregatio 43.9 1.2E+03 0.026 33.3 63.5 19 1222-1240 471-489 (895)
82 KOG4593|consensus 43.8 9.1E+02 0.02 31.9 42.2 507 29-558 110-640 (716)
83 KOG4302|consensus 41.3 1E+03 0.022 31.8 34.4 29 1023-1051 17-45 (660)
84 PRK10869 recombination and rep 41.0 1E+03 0.022 31.6 26.3 38 245-286 184-221 (553)
85 PF12718 Tropomyosin_1: Tropom 40.4 4.6E+02 0.0099 27.5 18.2 92 981-1072 37-128 (143)
86 PF08317 Spc7: Spc7 kinetochor 40.2 7.7E+02 0.017 30.1 26.3 49 422-470 210-258 (325)
87 PF05667 DUF812: Protein of un 39.6 1.1E+03 0.023 31.5 33.1 32 2005-2039 558-589 (594)
88 smart00787 Spc7 Spc7 kinetocho 39.4 7.6E+02 0.017 29.8 21.7 26 342-367 62-87 (312)
89 PF13851 GAS: Growth-arrest sp 39.4 5.9E+02 0.013 28.5 16.4 60 1959-2018 94-153 (201)
90 PF08429 PLU-1: PLU-1-like pro 39.2 8.1E+02 0.018 30.0 21.0 56 1711-1767 2-62 (335)
91 PRK01156 chromosome segregatio 38.9 1.4E+03 0.03 32.7 68.9 12 974-985 836-847 (895)
92 PF00038 Filament: Intermediat 38.8 7.8E+02 0.017 29.8 35.6 21 914-934 165-185 (312)
93 PF08317 Spc7: Spc7 kinetochor 38.1 8.3E+02 0.018 29.8 21.9 26 449-474 68-93 (325)
94 PF04136 Sec34: Sec34-like fam 36.9 5.1E+02 0.011 27.6 12.2 43 2006-2051 47-89 (157)
95 TIGR00634 recN DNA repair prot 36.7 1.2E+03 0.025 31.2 23.0 113 2025-2137 270-392 (563)
96 PF05667 DUF812: Protein of un 35.6 1.2E+03 0.026 31.0 34.6 28 1023-1050 407-434 (594)
97 PF07888 CALCOCO1: Calcium bin 33.9 1.2E+03 0.026 30.4 32.8 298 272-578 149-456 (546)
98 PF01576 Myosin_tail_1: Myosin 33.9 20 0.00043 49.8 1.6 11 989-999 612-622 (859)
99 PF12718 Tropomyosin_1: Tropom 33.2 5.9E+02 0.013 26.7 15.2 21 1177-1197 77-97 (143)
100 PRK10869 recombination and rep 33.1 1.3E+03 0.028 30.6 26.2 19 974-992 203-221 (553)
101 COG1382 GimC Prefoldin, chaper 31.5 3.4E+02 0.0073 27.2 8.8 17 1219-1235 76-92 (119)
102 cd07662 BAR_SNX6 The Bin/Amphi 29.4 8.6E+02 0.019 27.4 16.8 54 176-257 84-138 (218)
103 PF15397 DUF4618: Domain of un 29.4 9.5E+02 0.021 27.9 17.4 85 2072-2156 134-222 (258)
104 TIGR01834 PHA_synth_III_E poly 27.7 9.8E+02 0.021 28.8 13.4 124 1566-1691 178-318 (320)
105 TIGR02338 gimC_beta prefoldin, 27.2 3.2E+02 0.007 27.1 8.3 106 1149-1254 3-108 (110)
106 PHA02562 46 endonuclease subun 26.9 1.6E+03 0.035 29.8 26.2 231 1026-1314 162-397 (562)
107 COG4913 Uncharacterized protei 26.3 1.6E+03 0.036 29.6 22.4 61 2062-2122 776-839 (1104)
108 KOG0933|consensus 25.7 2E+03 0.043 30.4 73.2 137 633-780 329-467 (1174)
109 PRK09343 prefoldin subunit bet 25.4 4.1E+02 0.0088 26.9 8.7 22 1218-1239 76-97 (121)
110 PF05557 MAD: Mitotic checkpoi 24.7 4.5E+02 0.0097 36.3 12.0 23 382-404 564-586 (722)
111 PF15450 DUF4631: Domain of un 24.7 1.6E+03 0.034 28.8 49.7 55 1018-1072 86-144 (531)
112 KOG0972|consensus 24.6 8.5E+02 0.018 28.0 11.3 109 1579-1708 218-326 (384)
113 PF11802 CENP-K: Centromere-as 24.5 1.2E+03 0.025 27.2 18.3 85 1175-1266 54-138 (268)
114 KOG0996|consensus 24.0 2.3E+03 0.049 30.5 83.2 57 493-549 445-503 (1293)
115 KOG1937|consensus 23.1 1.5E+03 0.033 28.1 29.5 27 1668-1694 306-332 (521)
116 PF09726 Macoilin: Transmembra 22.4 2.1E+03 0.045 29.5 26.5 225 1405-1661 415-661 (697)
117 cd00632 Prefoldin_beta Prefold 22.4 3.1E+02 0.0068 26.8 7.2 104 1151-1254 1-104 (105)
118 PF10168 Nup88: Nuclear pore c 22.3 2.1E+03 0.046 29.6 22.0 78 1220-1299 579-656 (717)
119 PF07889 DUF1664: Protein of u 21.6 5.1E+02 0.011 26.3 8.3 23 1123-1145 56-78 (126)
120 PRK11546 zraP zinc resistance 21.3 7.4E+02 0.016 25.8 9.5 62 1177-1243 51-112 (143)
121 TIGR02168 SMC_prok_B chromosom 21.2 2.8E+03 0.061 30.6 93.1 11 1144-1154 1038-1048(1179)
122 PF05531 NPV_P10: Nucleopolyhe 20.6 5.4E+02 0.012 23.4 7.2 54 989-1042 7-60 (75)
123 PF11887 DUF3407: Protein of u 20.3 1E+03 0.023 28.0 12.2 30 1174-1203 74-103 (267)
No 1
>KOG0517|consensus
Probab=100.00 E-value=2.2e-122 Score=1144.87 Aligned_cols=1762 Identities=14% Similarity=0.185 Sum_probs=1487.5
Q ss_pred ccccCCccchhHhHHHHHHhhHHHHHHhHhhhHhhhhhHHHHHhHHHHHHhHHHhhhhhcCCchhhhh---HHHHHHHHH
Q psy4474 20 GLVYDPKPIVDFRYQLLHVMSKEVINRWQGLVYDHKLYNDVYVKTDDWLTGLEKDLDTLKNTTDVEAK---NSLLQKLLT 96 (2174)
Q Consensus 20 ~~i~~~~~~l~~~y~~L~~~~~~r~~~L~~~~~~~q~f~~~~~e~~~Wl~e~e~~l~~~~~~~~l~~~---~~~~~~l~~ 96 (2174)
.+|++|+.+|..+|++|+.+|..|+.+|++++..|+||.+ |++.++||.++++++.+...|+||.+. ++||++|+.
T Consensus 599 ~vi~~R~~~le~~y~eL~~laa~RRarLE~sr~l~~F~~d-~~EeEaWlkEkeqi~~sa~~g~DLs~v~~ll~kHKalE~ 677 (2473)
T KOG0517|consen 599 QVIQERVAHLEQCYQELVELAAARRARLEESRRLWQFLWD-VEEEEAWLKEKEQILSSADTGRDLSSVLRLLQKHKALED 677 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999997777 999999999999999999999996666 457777777
Q ss_pred hhhhhhhhhhhhhccccccccccccccchHHHHHHHHHhhhhhhhhhhHHHhhhhhHHHHHHHhhccCCCcchhhhHHHH
Q psy4474 97 EKDQAGHKLTYLTSSGEKLYLDTAAKGREVVRQQLRALRDSKCSKTTLQEVLSHKRIIESLLDKSKSLPQINKDQALEKA 176 (2174)
Q Consensus 97 e~~~~~~~l~~l~~~g~~l~~~~~~~~~~~i~~~l~~l~~~w~~k~l~~e~~~~~~~v~~l~~~~~~L~~~~~~~~i~~~ 176 (2174)
|+..+.+.+..+...|+.|+++. ||..+.|..+
T Consensus 678 E~~~~~a~~~~~~~~G~~Lvae~-----------------------------------------------~pg~~~i~~R 710 (2473)
T KOG0517|consen 678 EMRGRDAHLKQMIREGEELVAEG-----------------------------------------------HPGSDQIQER 710 (2473)
T ss_pred HHhcchhHHHHHHHHHHHHHhcC-----------------------------------------------CCCCCcHHHH
Confidence 77766666666666666665554 4556677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhchHHHhhhhhhchhhHHHHHHHHHHHHH
Q psy4474 177 IVSVNKRYEDLVDGILKTISQLEESLDIFQQFQQLQKAYQEDQKQLWDKLSSLTERELKGKLSSWCGYEESVATLLDWLK 256 (2174)
Q Consensus 177 ~~~l~~r~~~l~~~~~~r~~~L~~~~~~~q~~~~~~k~~~~~~~~~~~~l~~~~~~~l~~~l~~w~~f~~~~~~l~~WL~ 256 (2174)
+..+..+|+.|...+..|+.+|++|..+|| |+.+++++.+||.
T Consensus 711 ~~~i~~~W~~L~~l~~~r~~rL~~A~~~~Q-------------------------------------ffaDAdd~~sWl~ 753 (2473)
T KOG0517|consen 711 AAEIREQWQRLEALVAGRGRRLQEARELYQ-------------------------------------FFADADDAESWLR 753 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------HhccHHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999
Q ss_pred HHHhhhccccccCCCHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhcCCChHH------HHHHHHHHHHHHHHHHH
Q psy4474 257 VTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESLHQPSEQS------KQQLATITTRHGNVLKR 330 (2174)
Q Consensus 257 e~e~~l~~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~------~~~~~~l~~r~~~L~~~ 330 (2174)
++-..+++ .++|.|...++.++++|..|..+|.+|.+.|..|..++..|....++. ..++..|++.|..|..+
T Consensus 754 d~~rlvss-~d~G~DE~saq~LlkrH~~l~~El~a~~~~i~~L~eQa~~l~~~~~e~p~V~~~~~R~~~i~q~Y~El~~l 832 (2473)
T KOG0517|consen 754 DALRLVSS-EDVGHDEASAQALLKRHRDLEEELRAYRGDIDRLEEQASALPQESPEGPEVRQPLQRQDTISQDYEELQEL 832 (2473)
T ss_pred HHHHhccc-hhcCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 99987776 568899999999999999999999999999999999999998866432 34899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHhhHHHHHHHHHHHHHHHhhhhhhHHHHh--hhhh
Q psy4474 331 AQKFTEAYEGIVSIHQAYTKAVLDTQEWIDATYNAVNMWGDLTLERVSLHSNLERLKNLEKELGRIGHKTVALK--NNVL 408 (2174)
Q Consensus 331 ~~~r~~~Le~~~~~~~~f~~~~~~~~~Wl~~~~~~l~~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~~~~l~--~~~l 408 (2174)
+.-|...|++++..+. |...|++++.||.+++..|.++. ++.+++.+.....+++.|+.+|.....++..++ ...+
T Consensus 833 A~lRrq~L~dalaLy~-~~se~d~~ElWi~Eke~~L~~m~-~~~~~E~vev~q~rFe~l~~eM~~~~~~v~~Vn~~a~qL 910 (2473)
T KOG0517|consen 833 AQLRRQRLEDALALYG-FYSECDACELWIKEKEKWLATMS-PPDSLEDVEVMQHRFEKLEQEMNTLAGRVAEVNDIARQL 910 (2473)
T ss_pred HHHHHHHHHHHHHHHH-HHhhccHHHHHHHHHHHHHhccC-CCCChhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999999999998766 55589999999999999999763 346788899999999999999999988888888 4667
Q ss_pred hccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccC--CCCcHHH
Q psy4474 409 ESTGPIGKENINQEINQITLDWTNLQNTLQVIDKHHAKCLSIWNDFLSSKNTLEKWIEGFQKKIEAEKDIG--DCTNLDD 486 (2174)
Q Consensus 409 ~~~~~~~~~~i~~~~~~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~~~~~~l~~~~~~~--~~~~~~~ 486 (2174)
...+|++.+.|..+.+.|+.+|..|...+..|...|+.+... ..|...|.+...||.++...+.+.+..+ ...+.+.
T Consensus 911 ~~~ghp~sd~I~~~Q~~Ln~rW~~l~~l~~qk~~~L~~a~~V-~~f~~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~al 989 (2473)
T KOG0517|consen 911 LEVGHPNSDEILARQDKLNQRWQQLRELVDQKKVALESALRV-ETFHLECEETRVWIRDKTRVLESTDRLGNDLAGVMAL 989 (2473)
T ss_pred HHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHhccccCcchHHHHHH
Confidence 788999999999999999999999999999999999999865 5899999999999999998888754332 3456788
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy4474 487 LEKYKALLQEVISHNSDMETLNDKCEALMELAAH--SPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEE 564 (2174)
Q Consensus 487 l~~~k~l~~ei~~~~~~l~~l~~~~~~L~~~~~~--~~i~~~~~~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~ 564 (2174)
..++..++.++...+++|..|...+..+....|. ..|..++..+...|..|...+.++..++++. ...+.|++++++
T Consensus 990 qrrL~~lErdl~aie~kv~~L~~ea~~v~~~~Paea~~i~~r~~el~~~w~~l~~~~~~~~~~l~ea-~~lQ~Fl~dld~ 1068 (2473)
T KOG0517|consen 990 QRRLQGLERDLAAIEAKVAALEKEANKVEEEHPAEAQAINARIAELQALWEQLQQRLQEREERLEEA-GGLQRFLRDLDD 1068 (2473)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 8899999999999999999999999998877655 5588999999999999999999999999976 467799999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHhccccChhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHH
Q psy4474 565 VEAWLHKAHATVQECAGNGSKNVLKERLDTVNMVAERIPEGQHLMSVLQDTFTKALDTTPSDQQDSLREAMTVLRDSWDR 644 (2174)
Q Consensus 565 l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~el~~~~~~l~~l~~~~~~l~~~~~~~~~~~i~~~~~~l~~~w~~ 644 (2174)
|..||..++..+.+.+.|.|+.+++.+|.+|.++..+|..++..+..+...|..+......|..-.+.+++..+...|..
T Consensus 1069 f~~Wl~~tq~~~~see~p~~l~eAe~LL~qH~~l~eEI~~~~e~y~~~~~~ge~~~~g~~~p~~~~l~erL~~L~~gw~e 1148 (2473)
T KOG0517|consen 1069 FQAWLESTQTQVASEEGPVDLAEAEQLLKQHAALREEIDGYQEDYQRMRALGETVADGQTDPQYLFLRERLQALGTGWEE 1148 (2473)
T ss_pred HHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHhHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999888754445566799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhCCCCCcccccchhhhhHHhhhhHHhhhhhhhhHHHHHhhh
Q psy4474 645 LNRDLKSTSTQLKSYIARWNELDDLYNRFNMWLSGVENKLNEPSPVFTEIDLNTKWQQYVNDELEWENHSQNTLQWLDNI 724 (2174)
Q Consensus 645 L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 724 (2174)
|...+..|+..|.+++. ++.|.+..+....-+.+.+..|.-... |.++
T Consensus 1149 L~~mWe~Rq~~L~Q~l~-lQ~F~Rda~q~ea~l~~qE~~L~~d~l-p~sl------------------------------ 1196 (2473)
T KOG0517|consen 1149 LHRMWENRQKWLSQGLD-LQLFLRDARQAEATLSNQEAFLSHDNL-PDSL------------------------------ 1196 (2473)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHhcccc-cccH------------------------------
Confidence 99999999999999997 589999999999999999999975533 3344
Q ss_pred HhHHHHHHHHHHHHHHHHHHchhChHHHHHHHHHHhhh----hhhhhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHhHhH
Q psy4474 725 RSDMKTLLERSKHIVDDIEKKKDDLKPIQKEAQQLSEW----DSSIVPKVSDLETRWAAVKSAWDAKHSDLSSEIAQYSS 800 (2174)
Q Consensus 725 ~~~~~~~l~k~~~l~~el~~~~~~l~~l~~~~~~L~~~----~~~i~~~l~~L~~rw~~L~~~~~~r~~~L~~~l~~~~~ 800 (2174)
..+++++++|..|...|..+.+.+..+...|+.|+.. .+.|.++...+..||..+...+..+..+|..++ .++.
T Consensus 1197 -e~ae~~LKrh~DF~~tm~a~~~ki~a~~~~gd~Lv~~~h~~s~~I~ek~~~I~~r~~~nr~rA~q~~~~L~~sl-elQ~ 1274 (2473)
T KOG0517|consen 1197 -EEAEALLKRHRDFLTTMDANDEKIEALVDTGDKLVSEGHIDSDKIREKAQSILARRKANRERAQQRLRKLKDSL-ELQE 1274 (2473)
T ss_pred -HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 5788999999999999999999999999999999996 468889999999999999999999999999987 5899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhchH
Q psy4474 801 YQNAVQDAEKWLLQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDYSSYQNAVQDAEKWLLQISFQLMAHNSLYINNRQ 880 (2174)
Q Consensus 801 ~~~~l~~l~~wl~e~~~~L~~~~~~~~~~~~~~~~~~~~~q~~~~e~~~f~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 880 (2174)
|..++.+|..||.+. .|++...+|... ..+...+.+|+ .|...+.....||......
T Consensus 1275 flqd~~EL~~Wi~EK--~l~a~Desy~~~-~nl~~k~~kHq-------AFeaELaank~~l~~i~~e------------- 1331 (2473)
T KOG0517|consen 1275 FLQDCDELKLWIEEK--MLMAQDESYRDA-RNLHSKWLKHQ-------AFEAELAANKEWLEKIEKE------------- 1331 (2473)
T ss_pred HHHHHHHHHHHHHHH--hhhccccchhhh-hHHHHHHHHHH-------HHHHHHHhChHHHHHHHHH-------------
Confidence 999999999999985 677766655432 23334444444 5555555566666554311
Q ss_pred HhHHHHHHHHHhhhhhhcCcCCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHH
Q psy4474 881 QTLEQIQHHEKLLQDVILSPDNKLAPCFSAEEGSPIKDKIDRLEKETKAQSDRIQDALKTLNQLIGHRKEFEVDVENVEA 960 (2174)
Q Consensus 881 ~~l~~i~~~~~~~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~L~~~~~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~~~~ 960 (2174)
|..|... .|.....|..++..|+.+|.+|......++.+|.++- ....|.+.+.++..
T Consensus 1332 --------------------G~~L~~e-kpe~~~~V~~kl~~L~~~W~~Le~~t~~Kg~~L~qA~-~q~~~~qs~~D~~~ 1389 (2473)
T KOG0517|consen 1332 --------------------GQELVSE-KPELKALVEKKLRELHKQWDELEKTTQEKGRKLFQAN-RQELLLQSLADAKK 1389 (2473)
T ss_pred --------------------HHHHHhc-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHH
Confidence 2212111 3567788999999999999999999999999999995 57889999999999
Q ss_pred HHHHhHHhhccccccCChHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhhhhhccChhchhhHHHHHHHHHHHHHHHHHHH
Q psy4474 961 KLKELEVAVEGDVKTNNVLMLQELLNKYAQLNEEAGELNMMISNVSIATEHMNLNDADRLTVNDSVSSMQKRYAQLSRTI 1040 (2174)
Q Consensus 961 WL~e~e~~l~~~~~~~d~~~l~~~l~k~~~l~~ei~~~~~~v~~l~~~~~~L~~~~~~~~~i~~~~~~L~~rw~~L~~~~ 1040 (2174)
||.+.+..+.|.++|.|+.++..+++|++.++.++..+...|..|...+..|...++++..|......+..||..|+.++
T Consensus 1390 ~l~~le~qL~S~D~G~DL~Svn~llkKqq~lEsem~~~~~kv~el~s~~~~ma~~~~~a~~I~~~~~~v~~Rf~~L~~Pl 1469 (2473)
T KOG0517|consen 1390 KLDELESQLQSDDTGKDLTSVNDLLKKQQVLESEMEVRAQKVAELQSQAKAMAEEGHSAENIEETTLAVLERFEDLLGPL 1469 (2473)
T ss_pred HHHHHHHHhcCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccCcchhhHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999997777788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCChHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHhh
Q psy4474 1041 EDRISTVNNKLQSVKRLQHKVEEAKALLQKAESQLARPVSTQAEDISEALTVYQKLLDEINSWKNSQSDEDLVHLADSIK 1120 (2174)
Q Consensus 1041 ~~R~~~Le~~l~~~~~f~~~~~~~~~wl~~~e~~l~~~~~~~~~~~~~~l~~~~~l~~el~~~~~~~~~~~~~~l~~~~~ 1120 (2174)
..|+..|+.+.. +++|..+++....|+.+.- |.+
T Consensus 1470 ~~R~~~Le~S~e-~hQf~~dvddE~~WV~Erl-----P~A---------------------------------------- 1503 (2473)
T KOG0517|consen 1470 QERRKQLEASKE-LHQFVRDVDDELLWVAERL-----PLA---------------------------------------- 1503 (2473)
T ss_pred HHHHHHHHHHHH-HHHHHHhhhHHHHHHHhhC-----ccC----------------------------------------
Confidence 999999998755 6789999999999998865 332
Q ss_pred cHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4474 1121 PLDEVVERIENHAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKIIADIQEYEAILATAS 1200 (2174)
Q Consensus 1121 ~l~~~~~~~~~~~~~~L~~~~~~~~~f~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~el~~~~~~l~~~~ 1200 (2174)
.-.++|.++..++.+.++++.|..+|.+|++.|+.+.
T Consensus 1504 -------------------------------------------~s~d~G~~L~~~q~l~KK~q~Lq~EI~~H~prI~~vl 1540 (2473)
T KOG0517|consen 1504 -------------------------------------------SSTDYGENLQTVQSLHKKNQTLQAEIKGHQPRINDVL 1540 (2473)
T ss_pred -------------------------------------------CchhhccChHHHHHHHHHhHHHHHHHHhcchHHHHHH
Confidence 1246888999999999999999999999999999999
Q ss_pred hhccccccCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhhhcc
Q psy4474 1201 DKGDQLSSDGTISDRNEITEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVPSSSRLHNL 1280 (2174)
Q Consensus 1201 ~~~~~L~~~~~~~~~~~i~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~l~~f~~~~~~~~~wl~~~~~~l~~~~~~~~~ 1280 (2174)
..|+.|+..++|. ++.|...+..|+..|..|...++.+...+.... +.++|.-++.++..|+.+.+..+.+ .+++.+
T Consensus 1541 ~~gq~Li~~~h~~-a~~i~~~~~eLe~aW~eL~~a~e~R~~~L~~a~-kaQQY~fDaaE~EaWm~Eqel~m~s-ee~gkD 1617 (2473)
T KOG0517|consen 1541 ERGQSLIDSGHPE-AEAIEEKLQELESAWQELKEACELRRQRLDEAV-KAQQYYFDAAEAEAWMGEQELYMMS-EEYGKD 1617 (2473)
T ss_pred HHhHHHHhcCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHhhhHHHHhh-hhcccc
Confidence 9999999999885 688999999999999999999999988888877 5899999999999999998877765 478888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhcchhhhhhccchhhhhhHHHHHHhhhhhchhHHhHHHHHH
Q psy4474 1281 RKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVKTLPVLLLEVTSVDVELDKQRLELATKEVQPYVQRYETLKK 1360 (2174)
Q Consensus 1281 ~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~w~~L~~ 1360 (2174)
-.+.-.+.++|..+...+..+...++.+-.... . +.....| ..+.+..+-..|...|..|.+
T Consensus 1618 E~sa~~llkKH~~Le~~v~~Y~~~i~qL~~~~~-----------~---lv~~~hP----~~eri~~rQ~qldkly~~Lk~ 1679 (2473)
T KOG0517|consen 1618 EDSALKLLKKHQALEQEVEDYAQTIEQLAQKAQ-----------A---LVEANHP----ESERISRRQSQLDKLYAGLKD 1679 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H---HhcCCCC----hHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777777766555444222111 1 1111111 223455555566789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccchHHHHHHHHHHHhhcch-hhhhhHHHHHHHHH
Q psy4474 1361 NIAEAIDKFETQANEHEAYKQAYNEAYDWLRKAKLGAQANADCHGEQQTTKDKADKIKQITKSLP-EGQKLIDKTVALKN 1439 (2174)
Q Consensus 1361 ~~~~R~~~L~~a~~~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~~~~el~-~~~~~v~~l~~~~~ 1439 (2174)
.+.+|..+|++++.++ .|..++++|..||.+.+... .....|.|++.|.-+-.+|..|..++. .++.+|.+++.+++
T Consensus 1680 LA~eRr~~Lee~l~L~-el~RE~dDLeqWIae~e~vA-gS~elGqD~EHv~~Lq~KF~eFa~~te~iG~eRv~~~n~la~ 1757 (2473)
T KOG0517|consen 1680 LAEERRRRLEETLRLY-ELSREVDDLEQWIAEKEVVA-GSEELGQDFEHVTLLQEKFREFARDTEAIGSERVAACNLLAD 1757 (2473)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh-cChhhcCChHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999998766 68999999999999977665 456889999999999999999999998 88999999999999
Q ss_pred HHHhhcChhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCchH
Q psy4474 1440 NVLESTGPIGKENINQEINQITLDWTNLQNTLQDIDKHHAKCLSLWNDFLSSKNTLEKWIEGFQKKIESEKDIGDCTNLD 1519 (2174)
Q Consensus 1440 ~L~~~~~~~~~~~i~~~l~~L~~~W~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~L~~~~~~~~~~~~~ 1519 (2174)
.|+..+|| .++.|...-+.|++.|..|.+.+..|.+.|..+.. ++.|+.++.++..||.++-..|+.+-..+..+...
T Consensus 1758 ~LI~~ghs-~a~tvaewkd~LneaW~~LlELi~tR~q~Laas~e-lhrf~~D~~E~l~riqeK~~~lp~~lgRD~~s~~a 1835 (2473)
T KOG0517|consen 1758 ELIERGHS-AAATVAEWKDGLNEAWADLLELIDTRGQKLAASRE-LHRFHRDAREVLGRIQEKQAALPDDLGRDLNSAEA 1835 (2473)
T ss_pred HHHhcCCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHhhCchhhCCCcchHHH
Confidence 99999987 47889999999999999999999999999999997 89999999999999999999999866556666667
Q ss_pred hHHHHHHHHHhhhhhhchhhHHHHHhhhhhhhhhcccCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1520 DLEKYKALLQEGLHKEADNKKVLIDSFNKGIIGMTELESEEVKDLIQVGVHGLQVELNALLQNIEAEINKVANAAQERKA 1599 (2174)
Q Consensus 1520 ~l~k~~~l~~ei~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~~~~~~~~~ 1599 (2174)
..++|.+|..||.+ -.++|..+.+.+..|...+.++.+..|..+-+.+..-|..|...+..|+.+|.++.+ ...
T Consensus 1836 l~R~H~~fe~dl~~-----l~~Qvqql~e~a~rLq~~YaG~kA~aI~~reqeV~qaW~~L~~~~~~Rr~~L~~t~D-l~r 1909 (2473)
T KOG0517|consen 1836 LQRKHEAFEHDLVA-----LEPQVQQLQEDAARLQKAYAGDKAEAIQQREQEVLQAWAELQGACEARRDRLADTSD-LFR 1909 (2473)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 88999999999998 578899999999999888888899999999999999999999999999999999998 556
Q ss_pred HHHHHHHHHHHHHHH------hhhcCCHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhcccCCCCCchHHHHHHHH
Q psy4474 1600 MQDKISKLQSWLKQY------IDYSGNKQALQSRLDKVNEIQESFPEISTKLQTLSDHIENSSRKLPSRTNEAMYRDLAN 1673 (2174)
Q Consensus 1600 f~~~~~~l~~wl~~~------e~~~~d~~~~~~~l~k~~~~~~el~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~l~~ 1673 (2174)
|...+.++..|+..+ ++.+.|+..+.-++..|+.+.++|++..+.+..+.+.|+.++.. .|+++++|++++..
T Consensus 1910 F~~~VRDllsWmd~v~~qiqa~e~prDvss~ellm~~Hq~lkaEieARe~~f~~c~eLG~~lL~~-~hyas~EI~ekl~~ 1988 (2473)
T KOG0517|consen 1910 FFSMVRDLLSWMDEVIRQIQAQERPRDVSSVELLMNNHQGLKAEIEAREDNFSACIELGKSLLLR-KHYASEEIKEKLRA 1988 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHHh-cccchHHHHHHHHH
Confidence 777999999999995 34678999999999999999999999999999999999999994 78999999999999
Q ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHhhHHHHHhhhccccchHHHHH
Q psy4474 1674 LRYDFEKCVSSLSDVKQGLESRLVQWNEYETSLGKLITWLNDTENVLKNFTLQPTLNEKKQQRELKGKLSSWCGYEESVA 1753 (2174)
Q Consensus 1674 l~~~w~~L~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~~~e~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 1753 (2174)
|..+-+.+...|..|...|+..+ ++++|.+++..++.||...+.+|.+
T Consensus 1989 L~~~r~e~~~~W~~r~e~Lq~~l-ev~~F~RdA~~aeawl~aQep~L~S------------------------------- 2036 (2473)
T KOG0517|consen 1989 LQDRREELYEKWERRWEWLQQIL-EVHQFARDAKVAEAWLIAQEPYLRS------------------------------- 2036 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhchhHhhH-------------------------------
Confidence 99999999999999999999988 7999999999999999999999976
Q ss_pred HHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHH-hhhcCCChHHHHHHHHHhhhHHHHH
Q psy4474 1754 TLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKI-ESLHQPSEQSKQQLATITTRHGNVL 1832 (2174)
Q Consensus 1754 ~~~~wl~~~e~~l~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~l~~~~-~~l~~~~~~i~~~l~~l~~~~~~l~ 1832 (2174)
.++|.+++.|+.+|++|+.|++-+.+...++-.+...+ -.++. .......+.++.-.+.
T Consensus 2037 ----------------~elG~sVdeVE~lIkrHEaFeKs~~a~eERfsaLerltt~el~e----~r~~~~~~l~~~~r~k 2096 (2473)
T KOG0517|consen 2037 ----------------SELGSSVDEVEKLIKRHEAFEKSAAAQEERFSALERLTTLELIE----ARHRESTLLQRRMRVK 2096 (2473)
T ss_pred ----------------HhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHhhhhh
Confidence 48999999999999999999999999999988776655 33321 2222224445555666
Q ss_pred HHHHHHHhhhhhccc-----------------------C----CcHHHHHHHHHhhHHHHHhhhhhHhhHHHHHHHHHHh
Q psy4474 1833 KRAQKKIEAEKDIGD-----------------------C----TNLDDLEKYKALLQEVISHNSDMETLNDKCEALMELA 1885 (2174)
Q Consensus 1833 ~~~~~r~~~l~~~~~-----------------------~----~~~~~l~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~ 1885 (2174)
..+..|...|.+++. . .....+.+|+++..++..+.+.++.+-.+|. +..+.
T Consensus 2097 ~~~~~r~~~l~~a~~~asf~~~~~e~~~~~~~~~~~~~~v~~~~~~~~~~~~qa~~aevqa~~~~~~~i~~rg~-~~~~~ 2175 (2473)
T KOG0517|consen 2097 ELAESRGHALHDALLMASFTQWIEEKAKRQPPAPESSESVPLDEKAKTLQKHQAFEAEVQANAPVVQEIPRRGE-LAKSH 2175 (2473)
T ss_pred hHHhhhhhHHHHHHHhhhHHHHHhhhhcccCCCcccCCCCCcchhhHHHHhhcccccchhccchhhhhhhhhhh-HhhcC
Confidence 667777777776640 0 1236688999999999999999999999999 33333
Q ss_pred -CCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHH
Q psy4474 1886 -AHSPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQECDELEAGIKEEQKNIETQY 1964 (2174)
Q Consensus 1886 -~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~d~~~~~~~~~~~~~~~l~ 1964 (2174)
.++.|..++..+...|.++..++..|...|+++.... +|...++..++|+.+.+..+...| ++.+++.+-.+.
T Consensus 2176 ~~s~~~~~r~~~~~~~w~~l~~a~a~~~~~lEe~~~~l-ef~q~~~~~~awi~~ke~~~~~~d-----~Gkd~ehc~~l~ 2249 (2473)
T KOG0517|consen 2176 DRSEEIARRLQGLRKHWEDLRAAMALRGQELEEARDFL-EFGQRVDEAEAWIEEKEVKVGDGD-----LGKDLEHCLQLP 2249 (2473)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHhhhccccccccchh-----cchhHHHHHHHH
Confidence 7789999999999999999999999999999987754 599999999999999999888777 777777777777
Q ss_pred HhHHHHHHHHHHHHHHHhhhhHhhhhhhcC--------------CCcchhHHHHHHHHHHHHHHHHhhhcCChhhHHHHH
Q psy4474 1965 LQWNSFRETLAQMTAWLDSVEKNIKQEIAT--------------PWTTTQELRSKLLKLKEILKKCEKGVGDHEAFVDKY 2030 (2174)
Q Consensus 1965 ~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~--------------~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~ 2030 (2174)
.+++.++.....-..-+..++.-...|.+. ..+.+..+...+ .+..+..+. ....|.+..
T Consensus 2250 ~~l~~~r~~~~v~~~~~~~i~~l~~kL~n~~~~p~~~~~~~r~~~~~~w~~~eG~L--~Rk~~~~A~----e~k~~nRsw 2323 (2473)
T KOG0517|consen 2250 RRLRETRSDSPVDDQCPQSINDLSLKLKNQATLPARTQEQDRSRLNSAWRQLEGFL--YRKHLLGAL----EIKASNRSW 2323 (2473)
T ss_pred hhhhcccCCCCCcccccchhhhhhhhhcccCCCCccccccccccCCcHHHHHHhHH--HHHHHHhhh----hhhhhcccH
Confidence 776665544221111111111111112111 011111122212 112222221 122567788
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHhcCCCCCCc-hhhhHHHHHHH
Q psy4474 2031 EECSQKLAQVEAKYAKLIEPETSYEELQKRQGQLTALLTEKVDMDVLLNACVDLCDKVYESTSEPGHE-PLRVQMEKLQQ 2109 (2174)
Q Consensus 2031 ~~l~~wl~~~e~~l~~~~~~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~ll~~~~~~~~~-~i~~~~~~l~~ 2109 (2174)
..+..-|.+.+.-+ ..++|.|...++..+...-.+-......+..++.......-++. .|+++. -++.+.+++-+
T Consensus 2324 ~~vy~~i~e~el~f--ykD~k~~~a~ve~~~r~e~~lel~~a~i~~a~dy~kkk~v~~l~--~~~gae~llq~k~ee~m~ 2399 (2473)
T KOG0517|consen 2324 DNVYCRIREKELGF--YKDAKKDLASVELLVRGEPPLELDMAAIEVASDYHKKKHVFLLQ--LPPGAEHLLQAKDEEEME 2399 (2473)
T ss_pred HHHHHHHHhccchh--hcccCcccccchhhccCCcchhcchhHHHHHHHHHHHhHhhhhc--CCchHHHHHhhccHHHHH
Confidence 88888888876555 56799999999888888888888888888888888887777776 444444 45558899999
Q ss_pred HHHHHHHhhhhhhhhhHHhHHHHHHhhcCccccHHHHH
Q psy4474 2110 AVEALYDKITVTESLILSQVEAKYAKLIEPETSYEELQ 2147 (2174)
Q Consensus 2110 ~w~~L~~~~~~R~~~~~~~~~~f~~~~~e~~~~~~~~~ 2147 (2174)
.| |...+..|.+.. .|..++.|++.|.+-..
T Consensus 2400 sW--L~~~a~~~~~~l-----k~~~~~~e~~~~a~~~~ 2430 (2473)
T KOG0517|consen 2400 SW--LRALAVKRAEAL-----KLSDDVKELEVWANAVR 2430 (2473)
T ss_pred HH--HHHHHHHHHHHh-----hhhhhHHHhhhhHHHHH
Confidence 99 777777776433 78888888888866543
No 2
>KOG0517|consensus
Probab=100.00 E-value=1.4e-116 Score=1093.35 Aligned_cols=1839 Identities=15% Similarity=0.202 Sum_probs=1505.5
Q ss_pred hhhHHHHHhHHHHHHhHHHhhhhhcCCchhhhhHHHHHHHHHhhhhhhhhhhhhhccccccccccccccchHHHHHHHHH
Q psy4474 55 KLYNDVYVKTDDWLTGLEKDLDTLKNTTDVEAKNSLLQKLLTEKDQAGHKLTYLTSSGEKLYLDTAAKGREVVRQQLRAL 134 (2174)
Q Consensus 55 q~f~~~~~e~~~Wl~e~e~~l~~~~~~~~l~~~~~~~~~l~~e~~~~~~~l~~l~~~g~~l~~~~~~~~~~~i~~~l~~l 134 (2174)
..|..-..++..||..+-..|++-+.+.+|....+.+.+|-.=.. +.. |++.++.
T Consensus 298 ~~YE~LasdLL~WI~~ti~~L~~R~f~NSL~GvqqqL~aF~~yRT----------------~EK-----PPKf~EK---- 352 (2473)
T KOG0517|consen 298 EQYEGLASDLLEWIEQTIQTLESRKFPNSLEGVQQQLAAFNTYRT----------------VEK-----PPKFQEK---- 352 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHHHhhhc----------------ccC-----CCccccc----
Confidence 557778889999999999999988888777666555555543111 011 1111111
Q ss_pred hhhhhhhhhhHHHhhhhhHHHHHHHhhccCCC-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy4474 135 RDSKCSKTTLQEVLSHKRIIESLLDKSKSLPQ-INKDQALEKAIVSVNKRYEDLVDGILKTISQLEESLDIFQQFQQLQK 213 (2174)
Q Consensus 135 ~~~w~~k~l~~e~~~~~~~v~~l~~~~~~L~~-~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~L~~~~~~~q~~~~~~k 213 (2174)
+++ +..+=+|..+-++... +|.+. =-.-+.+|+..|..|...=..|.-.|.+-+--.+
T Consensus 353 ----------G~l---EvLlFtiQsklrA~Nqk~y~P~-eG~li~DInkAW~~LE~AEheRe~ALr~ELiRQE------- 411 (2473)
T KOG0517|consen 353 ----------GNL---EVLLFTIQSKLRANNQKPYTPR-EGKLISDINKAWERLEKAEHERELALRAELIRQE------- 411 (2473)
T ss_pred ----------cch---HHHHHHHHHHHHHcCCCCCCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 011 1112222222222322 12111 1234889999999988888888877776443333
Q ss_pred HHHHHHHHHHHhhhhchHHHhhhhhhchhhHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHHHHHHHHHHHHHHHhH
Q psy4474 214 AYQEDQKQLWDKLSSLTERELKGKLSSWCGYEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQ 293 (2174)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~l~~~l~~w~~f~~~~~~l~~WL~e~e~~l~~~~~~~~d~~~~~~~l~~~~~l~~el~~~~ 293 (2174)
+|..+..| |.+.+..-++||.+....++ .+.+|.++..|++.++||+.+..||.++.
T Consensus 412 -----------KLEqLA~R-----------FdrKAamREtwL~enqrlvs-qdnfg~~LaaVEAa~KKheAIetDI~Aye 468 (2473)
T KOG0517|consen 412 -----------KLEQLARR-----------FDRKAAMRETWLKENQRLVS-QDNFGYDLAAVEAALKKHEAIETDILAYE 468 (2473)
T ss_pred -----------HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHh-ccccCccHHHHHHHHHHhhhhhhhHHHHH
Confidence 33444444 99999999999999996665 47888999999999999999999999999
Q ss_pred HhHHHHHHHHHHhcCCChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy4474 294 QDLLQLKDKIESLHQPSEQS----KQQLATITTRHGNVLKRAQKFTEAYEGIVSIHQAYTKAVLDTQEWIDATYNAVNMW 369 (2174)
Q Consensus 294 ~~v~~l~~~~~~L~~~~~~~----~~~~~~l~~r~~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~~~~Wl~~~~~~l~~~ 369 (2174)
.+|..|..+|..|...++.. ..+.+++..+|..|..+...|+.+|+..+....-| .++..+.+||.+....+.+
T Consensus 469 eRvqal~ava~eL~~E~YHd~~rV~~r~~~V~~~W~~Ll~lL~arR~rL~~~~~Lqklf-qem~~~~d~meElk~~l~S- 546 (2473)
T KOG0517|consen 469 ERVQALVAVADELEAENYHDIKRVAARKDNVLRLWTYLLELLEARRQRLEQMLALQKLF-QEMLYTSDWMEELKQQLLS- 546 (2473)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh-
Confidence 99999999999998888665 45778999999999999999999999987655545 4677889999999998887
Q ss_pred ccccccHhhHHHHHHHHHHHHHHHhhhhhhHHHHhhhhhhccCc-----cccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 370 GDLTLERVSLHSNLERLKNLEKELGRIGHKTVALKNNVLESTGP-----IGKENINQEINQITLDWTNLQNTLQVIDKHH 444 (2174)
Q Consensus 370 ~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~~~~l~~~~l~~~~~-----~~~~~i~~~~~~l~~~w~~L~~~~~~r~~~L 444 (2174)
.++|..+..|..++++|.-++.++..++++|..++...+.+.+| .++..|..++..|...|..|...+..|+.+|
T Consensus 547 ~d~GkHL~gVedLLQkH~LlEadIn~~gerv~~~~a~a~~f~~~~~~~~cdp~vi~~R~~~le~~y~eL~~laa~RRarL 626 (2473)
T KOG0517|consen 547 RDVGKHLLGVEDLLQKHDLLEADINAQGERVKALNAQALRFDSPKEYKPCDPQVIQERVAHLEQCYQELVELAAARRARL 626 (2473)
T ss_pred HHHHHHHhhHHHHHHhhhhHHhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999877776654 5678899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCC-CCcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccC--C
Q psy4474 445 AKCLSIWNDFLSSKNTLEKWIEGFQKKIEAEKDIGD-CTNLDDLEKYKALLQEVISHNSDMETLNDKCEALMELAAH--S 521 (2174)
Q Consensus 445 e~~~~~~~~f~~~~~~l~~Wl~~~~~~l~~~~~~~~-~~~~~~l~~~k~l~~ei~~~~~~l~~l~~~~~~L~~~~~~--~ 521 (2174)
+.+...| .|..++++.++||.+++..+.+.+.+.| ..+...+.+||+++.||.++.+.+..+...|..|+..++| +
T Consensus 627 E~sr~l~-~F~~d~~EeEaWlkEkeqi~~sa~~g~DLs~v~~ll~kHKalE~E~~~~~a~~~~~~~~G~~Lvae~~pg~~ 705 (2473)
T KOG0517|consen 627 EESRRLW-QFLWDVEEEEAWLKEKEQILSSADTGRDLSSVLRLLQKHKALEDEMRGRDAHLKQMIREGEELVAEGHPGSD 705 (2473)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCC
Confidence 9999988 6888999999999999999998777765 4467899999999999999999999999999999999887 5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHh
Q psy4474 522 PIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQECAGNGSKNVLKERLDTVNMVAER 601 (2174)
Q Consensus 522 ~i~~~~~~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~e 601 (2174)
.|..++..+..+|+.|...+..|..+|+.+...+ .|+.+.+++.+||.++-..+++.+.+.|-.+++.++++|.++..+
T Consensus 706 ~i~~R~~~i~~~W~~L~~l~~~r~~rL~~A~~~~-QffaDAdd~~sWl~d~~rlvss~d~G~DE~saq~LlkrH~~l~~E 784 (2473)
T KOG0517|consen 706 QIQERAAEIREQWQRLEALVAGRGRRLQEARELY-QFFADADDAESWLRDALRLVSSEDVGHDEASAQALLKRHRDLEEE 784 (2473)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhccchhcCCchHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999886554 699999999999999999999988899999999999999999999
Q ss_pred ccccChhHHHHHHHHHHHhccCCCchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Q psy4474 602 IPEGQHLMSVLQDTFTKALDTTPSDQQDSLRE---AMTVLRDSWDRLNRDLKSTSTQLKSYIARWNELDDLYNRFNMWLS 678 (2174)
Q Consensus 602 l~~~~~~l~~l~~~~~~l~~~~~~~~~~~i~~---~~~~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~ 678 (2174)
|.++.+.+..+...+..+....+ ..+.+.. ++..+...|..|...+.-|+..|++++..+ .|...|+.+..||.
T Consensus 785 l~a~~~~i~~L~eQa~~l~~~~~--e~p~V~~~~~R~~~i~q~Y~El~~lA~lRrq~L~dalaLy-~~~se~d~~ElWi~ 861 (2473)
T KOG0517|consen 785 LRAYRGDIDRLEEQASALPQESP--EGPEVRQPLQRQDTISQDYEELQELAQLRRQRLEDALALY-GFYSECDACELWIK 861 (2473)
T ss_pred HHHhhhHHHHHHHHHHhhccccC--CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccHHHHHHH
Confidence 99999999999999999887643 2223445 999999999999999999999999999876 57788999999999
Q ss_pred HHHhhhCCCCCcccccchhhhhHHhhhhHHhhhhhhhhHHHHHhhhHhHHHHHHHHHHHHHHHHHHchhChHHHHHHHHH
Q psy4474 679 GVENKLNEPSPVFTEIDLNTKWQQYVNDELEWENHSQNTLQWLDNIRSDMKTLLERSKHIVDDIEKKKDDLKPIQKEAQQ 758 (2174)
Q Consensus 679 ~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~k~~~l~~el~~~~~~l~~l~~~~~~ 758 (2174)
+++..+....+++ ++ ++++....++..|..+|+.....+..|+..+++
T Consensus 862 Eke~~L~~m~~~~-~~-------------------------------E~vev~q~rFe~l~~eM~~~~~~v~~Vn~~a~q 909 (2473)
T KOG0517|consen 862 EKEKWLATMSPPD-SL-------------------------------EDVEVMQHRFEKLEQEMNTLAGRVAEVNDIARQ 909 (2473)
T ss_pred HHHHHHhccCCCC-Ch-------------------------------hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999998764433 22 577888899999999999999999999999999
Q ss_pred Hhhh----hhhhhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q psy4474 759 LSEW----DSSIVPKVSDLETRWAAVKSAWDAKHSDLSSEIAQYSSYQNAVQDAEKWLLQISFQLMAHNSLYINNRQQTL 834 (2174)
Q Consensus 759 L~~~----~~~i~~~l~~L~~rw~~L~~~~~~r~~~L~~~l~~~~~~~~~l~~l~~wl~e~~~~L~~~~~~~~~~~~~~~ 834 (2174)
|+.. ...|......|+.+|..|......+...|..++. .+.|...+.+...||.+....+.+...... +...+
T Consensus 910 L~~~ghp~sd~I~~~Q~~Ln~rW~~l~~l~~qk~~~L~~a~~-V~~f~~eC~et~~wi~dK~~~~e~t~~~~~-Dl~gv- 986 (2473)
T KOG0517|consen 910 LLEVGHPNSDEILARQDKLNQRWQQLRELVDQKKVALESALR-VETFHLECEETRVWIRDKTRVLESTDRLGN-DLAGV- 986 (2473)
T ss_pred HHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHhccccCc-chHHH-
Confidence 9996 4688899999999999999999999999887763 455666666666666555444433211110 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhchHHhHH-HHHHHHHhhhhhhcCcCCccccccccccc
Q psy4474 835 EQIQHHEKLLQDYSSYQNAVQDAEKWLLQISFQLMAHNSLYINNRQQTLE-QIQHHEKLLQDVILSPDNKLAPCFSAEEG 913 (2174)
Q Consensus 835 ~~~~~~q~~~~e~~~f~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~-~i~~~~~~~~~l~~~~~~~l~~~~~~~~~ 913 (2174)
..+......++ .+...++.+..+ ...+..+... .|..+
T Consensus 987 ---------------------------------------~alqrrL~~lErdl~aie~kv~~L-~~ea~~v~~~-~Paea 1025 (2473)
T KOG0517|consen 987 ---------------------------------------MALQRRLQGLERDLAAIEAKVAAL-EKEANKVEEE-HPAEA 1025 (2473)
T ss_pred ---------------------------------------HHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHhhc-ChHHH
Confidence 01111222222 444444444444 2223333332 46778
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhHHhhccccccCChHHHHHHHHHHHHHHH
Q psy4474 914 SPIKDKIDRLEKETKAQSDRIQDALKTLNQLIGHRKEFEVDVENVEAKLKELEVAVEGDVKTNNVLMLQELLNKYAQLNE 993 (2174)
Q Consensus 914 ~~i~~~l~~L~~~~~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~~~~WL~e~e~~l~~~~~~~d~~~l~~~l~k~~~l~~ 993 (2174)
..|..++..|...|..|...+..+..++.++. ..+.|..++++|..||..+...+.+++.+.|++..+.+|++|..|.+
T Consensus 1026 ~~i~~r~~el~~~w~~l~~~~~~~~~~l~ea~-~lQ~Fl~dld~f~~Wl~~tq~~~~see~p~~l~eAe~LL~qH~~l~e 1104 (2473)
T KOG0517|consen 1026 QAINARIAELQALWEQLQQRLQEREERLEEAG-GLQRFLRDLDDFQAWLESTQTQVASEEGPVDLAEAEQLLKQHAALRE 1104 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999996 57899999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHhHhhhhhhhc--cChhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 994 EAGELNMMISNVSIATEHMN--LNDADRLTVNDSVSSMQKRYAQLSRTIEDRISTVNNKLQSVKRLQHKVEEAKALLQKA 1071 (2174)
Q Consensus 994 ei~~~~~~v~~l~~~~~~L~--~~~~~~~~i~~~~~~L~~rw~~L~~~~~~R~~~Le~~l~~~~~f~~~~~~~~~wl~~~ 1071 (2174)
+|..++..+..+...|+.+. ...|....+.+++..|...|+.|..++..|...|..++. ++.|..+++.+..-+...
T Consensus 1105 EI~~~~e~y~~~~~~ge~~~~g~~~p~~~~l~erL~~L~~gw~eL~~mWe~Rq~~L~Q~l~-lQ~F~Rda~q~ea~l~~q 1183 (2473)
T KOG0517|consen 1105 EIDGYQEDYQRMRALGETVADGQTDPQYLFLRERLQALGTGWEELHRMWENRQKWLSQGLD-LQLFLRDARQAEATLSNQ 1183 (2473)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCchHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhH
Confidence 99999999999999999884 467888899999999999999999999999999999876 689999999999999999
Q ss_pred HHhhcc-ccCCChHHHHHHHHHHHHHHHHHHhhcCC----------------CChhhHHHHHHHhhcHHHHHHHHHHhhh
Q psy4474 1072 ESQLAR-PVSTQAEDISEALTVYQKLLDEINSWKNS----------------QSDEDLVHLADSIKPLDEVVERIENHAV 1134 (2174)
Q Consensus 1072 e~~l~~-~~~~~~~~~~~~l~~~~~l~~el~~~~~~----------------~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 1134 (2174)
|..|.. ..+.+.+.+.+.|++|+.|...|..++.. +.++.+..-.+++......+.....++.
T Consensus 1184 E~~L~~d~lp~sle~ae~~LKrh~DF~~tm~a~~~ki~a~~~~gd~Lv~~~h~~s~~I~ek~~~I~~r~~~nr~rA~q~~ 1263 (2473)
T KOG0517|consen 1184 EAFLSHDNLPDSLEEAEALLKRHRDFLTTMDANDEKIEALVDTGDKLVSEGHIDSDKIREKAQSILARRKANRERAQQRL 1263 (2473)
T ss_pred HHHHhcccccccHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998875 34556699999999999999999876543 3335666666666666777777888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccccCCCcc
Q psy4474 1135 PKLKSLLLLREQFTTLIMQIVGFITETTARVGE-VDGNSATVQEKIDKYDKIIADIQEYEAILATASDKGDQLSSDGTIS 1213 (2174)
Q Consensus 1135 ~~L~~~~~~~~~f~~~~~~l~~~~~~~~~~l~~-~~~~~~~~~~~l~~~~~l~~el~~~~~~l~~~~~~~~~L~~~~~~~ 1213 (2174)
.+|.+.+. ++.|...|.++..||.++.-...+ ...+...+...+.+|+.|.++|.+++..++.+...|++|+..+|.
T Consensus 1264 ~~L~~sle-lQ~flqd~~EL~~Wi~EK~l~a~Desy~~~~nl~~k~~kHqAFeaELaank~~l~~i~~eG~~L~~ekpe- 1341 (2473)
T KOG0517|consen 1264 RKLKDSLE-LQEFLQDCDELKLWIEEKMLMAQDESYRDARNLHSKWLKHQAFEAELAANKEWLEKIEKEGQELVSEKPE- 1341 (2473)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHhcCCc-
Confidence 88888776 468999999999999998443333 456677899999999999999999999999999999999987654
Q ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhhhccHHHHHHHHHHHHH
Q psy4474 1214 DRNEITEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVPSSSRLHNLRKTVEKLRQQNEK 1293 (2174)
Q Consensus 1214 ~~~~i~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~l~~f~~~~~~~~~wl~~~~~~l~~~~~~~~~~~~~e~l~~~~~~ 1293 (2174)
-.+.|..++..|..+|+.|.....+.-.++.+.-. -..|.+.+.++..|+.+.+..+.+. +++.+.+++..+++++.-
T Consensus 1342 ~~~~V~~kl~~L~~~W~~Le~~t~~Kg~~L~qA~~-q~~~~qs~~D~~~~l~~le~qL~S~-D~G~DL~Svn~llkKqq~ 1419 (2473)
T KOG0517|consen 1342 LKALVEKKLRELHKQWDELEKTTQEKGRKLFQANR-QELLLQSLADAKKKLDELESQLQSD-DTGKDLTSVNDLLKKQQV 1419 (2473)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHhcCC-CCCcCcHHHHHHHHHHHH
Confidence 45688889999999999988888777776665553 4569999999999999999999764 789999999999998887
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhhhhhcchhhhhhccchhhhhhHHHHHHhhhhhchhHHhHHHHHHHHHHHHHHHHHHH
Q psy4474 1294 RAAESEKLGAELEEIIEALHARETAVKTLPVLLLEVTSVDVELDKQRLELATKEVQPYVQRYETLKKNIAEAIDKFETQA 1373 (2174)
Q Consensus 1294 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~w~~L~~~~~~R~~~L~~a~ 1373 (2174)
+++.+......+.. +.+.. +.+... + . ..+.|......+..|+..|+..+..|+..|+.+.
T Consensus 1420 lEsem~~~~~kv~e----l~s~~---~~ma~~--------~-~---~a~~I~~~~~~v~~Rf~~L~~Pl~~R~~~Le~S~ 1480 (2473)
T KOG0517|consen 1420 LESEMEVRAQKVAE----LQSQA---KAMAEE--------G-H---SAENIEETTLAVLERFEDLLGPLQERRKQLEASK 1480 (2473)
T ss_pred HHHHHHHHHHHHHH----HHHhh---Hhhhcc--------C-c---chhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 76666544333322 22221 111111 0 0 2334566667778999999999999999999995
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccchHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHhhcChhhHHHH
Q psy4474 1374 NEHEAYKQAYNEAYDWLRKAKLGAQANADCHGEQQTTKDKADKIKQITKSLPEGQKLIDKTVALKNNVLESTGPIGKENI 1453 (2174)
Q Consensus 1374 ~~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~~i 1453 (2174)
.+.+|..+++.-..|+.+.-. ++++.+.|.++.+++..+++++.+++||.+|+|+|+.|...|..|+..++| +++.|
T Consensus 1481 -e~hQf~~dvddE~~WV~ErlP-~A~s~d~G~~L~~~q~l~KK~q~Lq~EI~~H~prI~~vl~~gq~Li~~~h~-~a~~i 1557 (2473)
T KOG0517|consen 1481 -ELHQFVRDVDDELLWVAERLP-LASSTDYGENLQTVQSLHKKNQTLQAEIKGHQPRINDVLERGQSLIDSGHP-EAEAI 1557 (2473)
T ss_pred -HHHHHHHhhhHHHHHHHhhCc-cCCchhhccChHHHHHHHHHhHHHHHHHHhcchHHHHHHHHhHHHHhcCCc-cHHHH
Confidence 555799999999999988644 355568899999999999999999999999999999999999999999987 48899
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCCCCchHhHHHHHHHHHhhh
Q psy4474 1454 NQEINQITLDWTNLQNTLQDIDKHHAKCLSLWNDFLSSKNTLEKWIEGFQKKIESEK-DIGDCTNLDDLEKYKALLQEGL 1532 (2174)
Q Consensus 1454 ~~~l~~L~~~W~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~L~~~~-~~~~~~~~~~l~k~~~l~~ei~ 1532 (2174)
...+..|...|..|...+..|.+.|..+.. .++|+-++.++++||++.+..+.+.+ +.|..++...|+||+.++.++.
T Consensus 1558 ~~~~~eLe~aW~eL~~a~e~R~~~L~~a~k-aQQY~fDaaE~EaWm~Eqel~m~see~gkDE~sa~~llkKH~~Le~~v~ 1636 (2473)
T KOG0517|consen 1558 EEKLQELESAWQELKEACELRRQRLDEAVK-AQQYYFDAAEAEAWMGEQELYMMSEEYGKDEDSALKLLKKHQALEQEVE 1636 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHhhhHHHHhhhhccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997 89999999999999999999887744 3344555578999999999998
Q ss_pred hhhchhhHHHHHhhhhhhhhhcccCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1533 HKEADNKKVLIDSFNKGIIGMTELESEEVKDLIQVGVHGLQVELNALLQNIEAEINKVANAAQERKAMQDKISKLQSWLK 1612 (2174)
Q Consensus 1533 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~wl~ 1612 (2174)
.+ ...|..+...+..|... ++++.+.|..+...|..-|..|...+.+|+.+|++++. ++.|.+++++|..||.
T Consensus 1637 ~Y-----~~~i~qL~~~~~~lv~~-~hP~~eri~~rQ~qldkly~~Lk~LA~eRr~~Lee~l~-L~el~RE~dDLeqWIa 1709 (2473)
T KOG0517|consen 1637 DY-----AQTIEQLAQKAQALVEA-NHPESERISRRQSQLDKLYAGLKDLAEERRRRLEETLR-LYELSREVDDLEQWIA 1709 (2473)
T ss_pred HH-----HHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 85 66788888888888874 66788999999999999999999999999999999997 6789999999999999
Q ss_pred HHh------hhcCCHHHHHHHHHHHHHHHhhch-hhhhHHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHhhH
Q psy4474 1613 QYI------DYSGNKQALQSRLDKVNEIQESFP-EISTKLQTLSDHIENSSRKLPSRTNEAMYRDLANLRYDFEKCVSSL 1685 (2174)
Q Consensus 1613 ~~e------~~~~d~~~~~~~l~k~~~~~~el~-~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~l~~l~~~w~~L~~~~ 1685 (2174)
+.+ +.|.|++.+..+..|+.+|..+.+ ....++.+++..+..|+. .+|+.+..|.++-+.|+..|.+|...+
T Consensus 1710 e~e~vAgS~elGqD~EHv~~Lq~KF~eFa~~te~iG~eRv~~~n~la~~LI~-~ghs~a~tvaewkd~LneaW~~LlELi 1788 (2473)
T KOG0517|consen 1710 EKEVVAGSEELGQDFEHVTLLQEKFREFARDTEAIGSERVAACNLLADELIE-RGHSAAATVAEWKDGLNEAWADLLELI 1788 (2473)
T ss_pred HHHHHhcChhhcCChHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh-cCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 965 346799999999999999999999 789999999999999999 578888999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHhhHHHHHhhhccccchHHHHHHHHHHHHHHHhh
Q psy4474 1686 SDVKQGLESRLVQWNEYETSLGKLITWLNDTENVLKNFTLQPTLNEKKQQRELKGKLSSWCGYEESVATLLDWLKVTEKK 1765 (2174)
Q Consensus 1686 ~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~~~e~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~wl~~~e~~ 1765 (2174)
..|...|..+. ..+.|+.++.++..|+.+....|
T Consensus 1789 ~tR~q~Laas~-elhrf~~D~~E~l~riqeK~~~l--------------------------------------------- 1822 (2473)
T KOG0517|consen 1789 DTRGQKLAASR-ELHRFHRDAREVLGRIQEKQAAL--------------------------------------------- 1822 (2473)
T ss_pred HHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHhhC---------------------------------------------
Confidence 99999999987 78999999999999999988877
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhh----c-CCChHHHHHHHHHhhhHHHHHHHHHHHHh
Q psy4474 1766 LGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESL----H-QPSEQSKQQLATITTRHGNVLKRAQKKIE 1840 (2174)
Q Consensus 1766 l~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~l~~~~~~l----~-~~~~~i~~~l~~l~~~~~~l~~~~~~r~~ 1840 (2174)
+.++|.|..++.+++++|..|+.||....+.|..+...|..| + ..+.+|..+-..+.+.|..|...|..|+.
T Consensus 1823 ---p~~lgRD~~s~~al~R~H~~fe~dl~~l~~Qvqql~e~a~rLq~~YaG~kA~aI~~reqeV~qaW~~L~~~~~~Rr~ 1899 (2473)
T KOG0517|consen 1823 ---PDDLGRDLNSAEALQRKHEAFEHDLVALEPQVQQLQEDAARLQKAYAGDKAEAIQQREQEVLQAWAELQGACEARRD 1899 (2473)
T ss_pred ---chhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999999999999999998 2 45678999999999999999999999999
Q ss_pred hhhhcccC------------------------------C-cHHHHHHHHHhhHHHHHhhhhhHhhHHHHHHHHHHh--CC
Q psy4474 1841 AEKDIGDC------------------------------T-NLDDLEKYKALLQEVISHNSDMETLNDKCEALMELA--AH 1887 (2174)
Q Consensus 1841 ~l~~~~~~------------------------------~-~~~~l~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~--~~ 1887 (2174)
.|.++.|. . ..-.+..|+.+..+|+++.+.+..+++.|+.|+... ++
T Consensus 1900 ~L~~t~Dl~rF~~~VRDllsWmd~v~~qiqa~e~prDvss~ellm~~Hq~lkaEieARe~~f~~c~eLG~~lL~~~hyas 1979 (2473)
T KOG0517|consen 1900 RLADTSDLFRFFSMVRDLLSWMDEVIRQIQAQERPRDVSSVELLMNNHQGLKAEIEAREDNFSACIELGKSLLLRKHYAS 1979 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHHhcccch
Confidence 99988521 1 234567899999999999999999999999999988 78
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhH
Q psy4474 1888 SPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQECDELEAGIKEEQKNIETQYLQW 1967 (2174)
Q Consensus 1888 ~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~d~~~~~~~~~~~~~~~l~~~~ 1967 (2174)
..|++++..|..+-+.+...+..|...|...+.- ++|.+++..+++||...++.|.+.+ ++....+++++.+++
T Consensus 1980 ~EI~ekl~~L~~~r~e~~~~W~~r~e~Lq~~lev-~~F~RdA~~aeawl~aQep~L~S~e-----lG~sVdeVE~lIkrH 2053 (2473)
T KOG0517|consen 1980 EEIKEKLRALQDRREELYEKWERRWEWLQQILEV-HQFARDAKVAEAWLIAQEPYLRSSE-----LGSSVDEVEKLIKRH 2053 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchhHhhHHh-----hCCCHHHHHHHHHHH
Confidence 8999999999999999999999999999998875 5699999999999999999999988 778889999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHhh-hhhhcCCCcchhHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhh
Q psy4474 1968 NSFRETLAQMTAWLDSVEKNI-KQEIATPWTTTQELRSKLLKLKEILKKCEKGVGDHEAFVDKYEECSQKLAQVEAKYAK 2046 (2174)
Q Consensus 1968 ~~l~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~l~~wl~~~e~~l~~ 2046 (2174)
+.|...+..-..+...+..-. -.+.+..+. -+.+..+...++...+.+...+.+.. ....+..|+++......+
T Consensus 2054 EaFeKs~~a~eERfsaLerltt~el~e~r~~-~~~~l~~~~r~k~~~~~r~~~l~~a~----~~asf~~~~~e~~~~~~~ 2128 (2473)
T KOG0517|consen 2054 EAFEKSAAAQEERFSALERLTTLELIEARHR-ESTLLQRRMRVKELAESRGHALHDAL----LMASFTQWIEEKAKRQPP 2128 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHhhhhhhHHhhhhhHHHHHH----HhhhHHHHHhhhhcccCC
Confidence 999888776555544433221 001110000 00122222233333333333222111 223445899988554443
Q ss_pred cCC--CCCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHhcCCCCCCchhhhHHHHHHHHHHHHHHhhhhhh--
Q psy4474 2047 LIE--PETSYEELQKRQGQLTALLTEKVDMDVLLNACVDLCDKVYESTSEPGHEPLRVQMEKLQQAVEALYDKITVTE-- 2122 (2174)
Q Consensus 2047 ~~~--~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~ll~~~~~~~~~~i~~~~~~l~~~w~~L~~~~~~R~-- 2122 (2174)
-+. .....++--+.+.+++.|..+..+..+.|+.+-..|. +...++ .+..|..+++.|...|..|...++.|.
T Consensus 2129 ~~~~~~~v~~~~~~~~~~~~qa~~aevqa~~~~~~~i~~rg~--~~~~~~-~s~~~~~r~~~~~~~w~~l~~a~a~~~~~ 2205 (2473)
T KOG0517|consen 2129 APESSESVPLDEKAKTLQKHQAFEAEVQANAPVVQEIPRRGE--LAKSHD-RSEEIARRLQGLRKHWEDLRAAMALRGQE 2205 (2473)
T ss_pred CcccCCCCCcchhhHHHHhhcccccchhccchhhhhhhhhhh--HhhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 222 1222344446677788899999999999998888887 344443 346799999999999999999999998
Q ss_pred hhhHHhHHHHHHhhcCccccHHH
Q psy4474 2123 SLILSQVEAKYAKLIEPETSYEE 2145 (2174)
Q Consensus 2123 ~~~~~~~~~f~~~~~e~~~~~~~ 2145 (2174)
...+...-.|-....+++.|.++
T Consensus 2206 lEe~~~~lef~q~~~~~~awi~~ 2228 (2473)
T KOG0517|consen 2206 LEEARDFLEFGQRVDEAEAWIEE 2228 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Confidence 67777788888888888888665
No 3
>KOG0040|consensus
Probab=100.00 E-value=5.5e-111 Score=1019.44 Aligned_cols=1835 Identities=15% Similarity=0.211 Sum_probs=1508.8
Q ss_pred ccccCCccchhHhHHHHHHhhHHHHHHhHhhhHhhhhhHHHHHhHHHHHHhHHHhhh--hhcCCchhhhhHHHHHHHHHh
Q psy4474 20 GLVYDPKPIVDFRYQLLHVMSKEVINRWQGLVYDHKLYNDVYVKTDDWLTGLEKDLD--TLKNTTDVEAKNSLLQKLLTE 97 (2174)
Q Consensus 20 ~~i~~~~~~l~~~y~~L~~~~~~r~~~L~~~~~~~q~f~~~~~e~~~Wl~e~e~~l~--~~~~~~~l~~~~~~~~~l~~e 97 (2174)
..|++|...|..+|..+...+..|+.+|++++ .+|+|.++++++..||.++-+++. +|.+|+++..+++||
T Consensus 13 ediqerrq~vl~~y~~fk~~~~~~~~kleds~-~~q~fkrdadel~~wi~ekl~~~~~~~y~dptnlq~k~qkh------ 85 (2399)
T KOG0040|consen 13 EDIQERRQEVLTRYQSFKERSAERRQKLEDSY-RFQYFKRDADELEKWIMEKLQIASDESYRDPTNLQGKIQKH------ 85 (2399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHhcCHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHH------
Confidence 34899999999999999999999999999997 699999999999999999999985 677777665554333
Q ss_pred hhhhhhhhhhhhccccccccccccccchHHHHHHHHHhhhhhhhhhhHHHhhhhhHHHHHHHhhccCCC--cchhhhHHH
Q psy4474 98 KDQAGHKLTYLTSSGEKLYLDTAAKGREVVRQQLRALRDSKCSKTTLQEVLSHKRIIESLLDKSKSLPQ--INKDQALEK 175 (2174)
Q Consensus 98 ~~~~~~~l~~l~~~g~~l~~~~~~~~~~~i~~~l~~l~~~w~~k~l~~e~~~~~~~v~~l~~~~~~L~~--~~~~~~i~~ 175 (2174)
++|++|+.+|++.|..|...|+.++. |++++.|..
T Consensus 86 -------------------------------------------qa~eaevqa~s~~i~~ld~t~~~~~~~~h~a~e~~~~ 122 (2399)
T KOG0040|consen 86 -------------------------------------------QAFEAEVQAHSRAIVELDKTGNEMITMGHFASEEIKA 122 (2399)
T ss_pred -------------------------------------------HHHHHHHHHhhhHHHHHHhHHHHHHhcccchhHHHHH
Confidence 67777888888899999999999987 899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhchHHHhhhhhhchhhHHHHHHHHHHHH
Q psy4474 176 AIVSVNKRYEDLVDGILKTISQLEESLDIFQQFQQLQKAYQEDQKQLWDKLSSLTERELKGKLSSWCGYEESVATLLDWL 255 (2174)
Q Consensus 176 ~~~~l~~r~~~l~~~~~~r~~~L~~~~~~~q~~~~~~k~~~~~~~~~~~~l~~~~~~~l~~~l~~w~~f~~~~~~l~~WL 255 (2174)
++..+...|+-|...+.+.+-+|..|+.+.| |.+.|+++..||
T Consensus 123 ~l~el~~lw~~l~~~~~ekg~kl~~al~~~q-------------------------------------~~~~c~~i~~wi 165 (2399)
T KOG0040|consen 123 RLEELHHLWDLLLEKLLEKGIKLLQALKLVQ-------------------------------------YLRECEDILEWI 165 (2399)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-------------------------------------HHHHHHHHHHHh
Confidence 9999999999999999999999999999999 999999999999
Q ss_pred HHHHhhhccccccCCCHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhcCCChHH----HHHHHHHHHHHHHHHHHH
Q psy4474 256 KVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESLHQPSEQS----KQQLATITTRHGNVLKRA 331 (2174)
Q Consensus 256 ~e~e~~l~~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~----~~~~~~l~~r~~~L~~~~ 331 (2174)
.++|..+.+ ..+|.|+++++.+.+++..|+.++.+|+.+|..++..|.+|++.+||. ..+.++++..|..|..++
T Consensus 166 ~dke~~~t~-~e~g~d~e~~evl~~kf~~f~~~~~~~e~rv~evnq~a~~~~~e~h~e~~~i~~k~~evn~aw~rl~~la 244 (2399)
T KOG0040|consen 166 GDKEAIVTS-EELGQDLEHVEVLQKKFEDFQKELAAHEYRVNEVNQYADKLVEEGHPELDLIQKKQDEVNAAWQRLKGLA 244 (2399)
T ss_pred ccchheeeH-HHhcccHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHcCCCchHHHHHhHHHHHHHHHHHHHHH
Confidence 999977765 678999999999999999999999999999999999999999999875 678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHhhHHHHHHHHHHHHHHHhhhhhhHHHHh--hhhhh
Q psy4474 332 QKFTEAYEGIVSIHQAYTKAVLDTQEWIDATYNAVNMWGDLTLERVSLHSNLERLKNLEKELGRIGHKTVALK--NNVLE 409 (2174)
Q Consensus 332 ~~r~~~Le~~~~~~~~f~~~~~~~~~Wl~~~~~~l~~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~~~~l~--~~~l~ 409 (2174)
-.|..+|-++. .+++|++++++...||.++...+++ .++|.|+.+++.++++|++++++|+++.+++..|. +..+.
T Consensus 245 ~~rq~~l~~a~-~~qrf~rd~~et~~wi~ek~~~l~s-ddygrdl~~~q~l~~~h~g~erdla~l~~kv~~l~~~a~~l~ 322 (2399)
T KOG0040|consen 245 LQRQEKLFGAA-EVQRFNRDVDETIAWIKEKEPVLSS-DDYGRDLASVQALQRKHEGLERDLAALEDKVKELCAEAEKLT 322 (2399)
T ss_pred HHHHHhhccHH-HHHHhcccHHHHHHHHhhccccccc-cccchhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999885 5899999999999999999998876 68999999999999999999999999999999998 36778
Q ss_pred ccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCC-CCcHHHHH
Q psy4474 410 STGPIGKENINQEINQITLDWTNLQNTLQVIDKHHAKCLSIWNDFLSSKNTLEKWIEGFQKKIEAEKDIGD-CTNLDDLE 488 (2174)
Q Consensus 410 ~~~~~~~~~i~~~~~~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~~~~~~l~~~~~~~~-~~~~~~l~ 488 (2174)
.++|..++.|+.+-+++...|+.+...+..|...|..++ .++.|..++.+|.+|+..+...++....+.+ ..++..|.
T Consensus 323 ~~hp~~a~qi~~~~~~~~~~w~~~~~~a~~r~~~l~~s~-~~hrf~ad~rdL~~w~~~~~aaInadel~~dvag~e~lL~ 401 (2399)
T KOG0040|consen 323 LSHPDDAPQIQEKKEDLVSSWEHIRTLATERKEKLQASY-WLHRFLADFRDLSSWINEMKAAINADELAKDVAGAEALLD 401 (2399)
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHhhhHHHHHHHHHHHHHHcCchhhHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999998 5679999999999999999999988665533 45789999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhccC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4474 489 KYKALLQEVISHNSDMETLNDKCEALMELAAH--SPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVE 566 (2174)
Q Consensus 489 ~~k~l~~ei~~~~~~l~~l~~~~~~L~~~~~~--~~i~~~~~~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~ 566 (2174)
.|+.+..+|+++...+..-...|..+...+++ ..++.++..+...|..|...|..|+...++. .+.+.|+++..+..
T Consensus 402 ~hqEhK~eIds~~dSf~~~~~~gq~l~~~~~~as~ev~ekl~~le~e~~~ll~lwe~r~~~yeqc-md~~lfyrdteq~d 480 (2399)
T KOG0040|consen 402 RHQEHKGEIDAREDSFKSADESGQKLVEAGHYASDEVREKLEILDNEKSALLELWEERRIQYEQC-MDLQLFYRDTEQVD 480 (2399)
T ss_pred HHHHHhhhhHHHHHHHhhhccccHHHHHccccccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHH
Confidence 99999999999999999999999999998877 5699999999999999999999999999865 57778999999999
Q ss_pred HHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHhccccChhHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHH
Q psy4474 567 AWLHKAHATVQECAGNGSKNVLKERLDTVNMVAERIPEGQHLMSVLQDTFTKALDTTPSDQQDSLREAMTVLRDSWDRLN 646 (2174)
Q Consensus 567 ~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~el~~~~~~l~~l~~~~~~l~~~~~~~~~~~i~~~~~~l~~~w~~L~ 646 (2174)
.||+..++.+...+.+....++...+++|++|+..+.+.+..+..+...+.+++...+.+.. .+..+-..+..+...+.
T Consensus 481 ~wmskqeafl~nedlg~sl~S~e~l~kkhedfEks~~aQEeki~~~d~~atkli~~~hy~~~-dv~~rr~~ll~rr~~l~ 559 (2399)
T KOG0040|consen 481 TWMSKQEAFLANEDLGDSLDSVEALLKKHEDFEKSLAAQEEKIIALDEFATKLIQGQHYAAE-DVAARRDALLARRDALR 559 (2399)
T ss_pred HHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccch-hHHHHHHHHHHHHHHHH
Confidence 99999999999988788888999999999999999999999999999999999998876544 46777788888999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhCCCCCcccccchhhhhHHhhhhHHhhhhhhhhHHHHHhhhHh
Q psy4474 647 RDLKSTSTQLKSYIARWNELDDLYNRFNMWLSGVENKLNEPSPVFTEIDLNTKWQQYVNDELEWENHSQNTLQWLDNIRS 726 (2174)
Q Consensus 647 ~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 726 (2174)
.....|+..|..+.. .+.|.+.++++..||.++-..+.. ..+.+| .
T Consensus 560 e~a~~r~~~lk~s~~-~q~~~rd~de~~~wi~Ek~~~a~d--d~y~d~-------------------------------~ 605 (2399)
T KOG0040|consen 560 EKAATRRRLLKESLL-LQQFYRDSDELKSWINEKLKTATD--ESYKDP-------------------------------T 605 (2399)
T ss_pred HHHhHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHhccccc--ccccCC-------------------------------C
Confidence 999999999999975 578999999999999998776543 233333 2
Q ss_pred HHHHHHHHHHHHHHHHHHchhChHHHHHHHHHHhhh----hhhhhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHhHhHHH
Q psy4474 727 DMKTLLERSKHIVDDIEKKKDDLKPIQKEAQQLSEW----DSSIVPKVSDLETRWAAVKSAWDAKHSDLSSEIAQYSSYQ 802 (2174)
Q Consensus 727 ~~~~~l~k~~~l~~el~~~~~~l~~l~~~~~~L~~~----~~~i~~~l~~L~~rw~~L~~~~~~r~~~L~~~l~~~~~~~ 802 (2174)
.+...+.+|+.|..++.+...+++.+...|+.++.. .+.+..++..+..-|..+..........|-.+ ...+.|.
T Consensus 606 nlk~kvqk~q~fe~el~An~~r~~~i~~~g~~~i~~~h~A~d~v~~r~~ev~~Lw~~l~~aT~~kg~kl~ea-~qq~qf~ 684 (2399)
T KOG0040|consen 606 NLKGKVQKHQNFEKELAANKSRLEDIQKTGQELIEGGHYAADNVTTRLSEVASLWEELLEATKKKGTKLREA-NQQQQFN 684 (2399)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHhHhHHHHHHHHHHHHhhcccccHHHHHH-HHhhhhh
Confidence 445678899999999999999999999999999996 35677889999999999999988888777654 4567899
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhchHHh
Q psy4474 803 NAVQDAEKWLLQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDYSSYQNAVQDAEKWLLQISFQLMAHNSLYINNRQQT 882 (2174)
Q Consensus 803 ~~l~~l~~wl~e~~~~L~~~~~~~~~~~~~~~~~~~~~q~~~~e~~~f~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 882 (2174)
....++..|+.+++..|.+- .|..+.. +.++.++ .+..
T Consensus 685 ~n~edve~wl~e~e~ql~se--d~gkdl~----~vqn~~k------------------------------------k~~l 722 (2399)
T KOG0040|consen 685 RNIEDIELWLSEVEGQVASE--DYGKDLT----SVQNLQK------------------------------------KHGL 722 (2399)
T ss_pred ccHHHHHHHHHHHHHHHhhh--hcCCCHH----HHHHHHH------------------------------------HHHH
Confidence 99999999999999888652 2222221 1111111 1111
Q ss_pred HH-HHHHHHHhhhhhhcCcCCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q psy4474 883 LE-QIQHHEKLLQDVILSPDNKLAPCFSAEEGSPIKDKIDRLEKETKAQSDRIQDALKTLNQLIGHRKEFEVDVENVEAK 961 (2174)
Q Consensus 883 l~-~i~~~~~~~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~L~~~~~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~~~~W 961 (2174)
|+ .+..|...+..+...... +.......+..|..+...|..+|+.+..+...+..+|-+.+...+-| ++..+-+.|
T Consensus 723 Le~~v~a~~d~vd~~~~~a~~--fee~~h~da~~i~~kqe~L~~r~eal~dp~a~rk~Kl~d~l~~~~l~-rd~edE~aw 799 (2399)
T KOG0040|consen 723 LESDVAAHQDRVDGITDLAAQ--FQEIGHFDAKNIRAKQENLVARYEALKEPLATRKQKLLDSLQLQQLF-RDTEDEEAW 799 (2399)
T ss_pred HHHHHHHhhhhHHHHHHHHHH--HHHHcCCcHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhhhh-hchHHHHHH
Confidence 11 222233333222100000 00011245567889999999999999999999999999999765555 467888999
Q ss_pred HHHhHHhhccccccCChHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhhhhh-ccChhchhhHHHHHHHHHHHHHHHHHHH
Q psy4474 962 LKELEVAVEGDVKTNNVLMLQELLNKYAQLNEEAGELNMMISNVSIATEHM-NLNDADRLTVNDSVSSMQKRYAQLSRTI 1040 (2174)
Q Consensus 962 L~e~e~~l~~~~~~~d~~~l~~~l~k~~~l~~ei~~~~~~v~~l~~~~~~L-~~~~~~~~~i~~~~~~L~~rw~~L~~~~ 1040 (2174)
+.+.|+...|+..|.++-.+++++++|+.+.++|..|.+.+..+...|..+ ..+|..+++|+.++..|++.|..+....
T Consensus 800 i~E~E~~a~st~~gkdlI~~qnl~~k~q~~~~~ia~he~ri~~i~~r~~~m~~~~~f~aedvk~~~~~L~~~~~slk~ka 879 (2399)
T KOG0040|consen 800 IREKEPIAASTNRGKDLIGVQNLLKKHQALLAEIANHEPRIQEVTSRGNKMVEEGHFAAEDVRSRLKSLNQNWESLKAKA 879 (2399)
T ss_pred HhhcchhccchhcchhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887 6788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC-hHHHHHHHHHHHHHHHHHHhhcCCCCh----------
Q psy4474 1041 EDRISTVNNKLQSVKRLQHKVEEAKALLQKAESQLARPVSTQ-AEDISEALTVYQKLLDEINSWKNSQSD---------- 1109 (2174)
Q Consensus 1041 ~~R~~~Le~~l~~~~~f~~~~~~~~~wl~~~e~~l~~~~~~~-~~~~~~~l~~~~~l~~el~~~~~~~~~---------- 1109 (2174)
..|...|+..+. .++|..++.+...|+.+.|+...+..... .+.....+++|++++.++.++++++.+
T Consensus 880 ~~r~~dle~s~q-~~qy~ad~~eae~w~~ekEpi~~stdygKdedsa~allkkhea~~~dl~af~~~i~~lr~qa~~cq~ 958 (2399)
T KOG0040|consen 880 SQRRQDLEDSLQ-AQQYLADANEAESWMREKEPIVGSTDYGKDEDSAEALLKKHEALLSDLEAFGDSIQALREQANACRQ 958 (2399)
T ss_pred HhcccchhhHHH-HHHHHHHHhhHHHHhhccCcccccccccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhc
Confidence 999999999877 56788889999999999997765533222 366778899999999998776543211
Q ss_pred -------------------------------hhHHHHHHHhhc-H---------------------------HHH-----
Q psy4474 1110 -------------------------------EDLVHLADSIKP-L---------------------------DEV----- 1125 (2174)
Q Consensus 1110 -------------------------------~~~~~l~~~~~~-l---------------------------~~~----- 1125 (2174)
.++..+..+.+. + ...
T Consensus 959 Q~tpv~~~g~~~v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~~~~~~~l~~~~~ 1038 (2399)
T KOG0040|consen 959 QEAPVEDVGKECVLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPGSASQPNLRREES 1038 (2399)
T ss_pred cCCchhhHHHHHHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhccCCcchHHHHHHHH
Confidence 111111111110 0 000
Q ss_pred H----HHHH----------HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHhHHH
Q psy4474 1126 V----ERIE----------NHAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKIIADIQE 1191 (2174)
Q Consensus 1126 ~----~~~~----------~~~~~~L~~~~~~~~~f~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~el~~ 1191 (2174)
+ .... ..+..+|......+- ..+.+.++..|+.++...+.++ ++..|..+++++..|..++.+
T Consensus 1039 i~~rq~qi~~qyr~lld~~~er~~~l~k~~ke~~-l~~ea~dl~~wi~ekE~~~~~v--dle~V~~lqkKfddf~~dlka 1115 (2399)
T KOG0040|consen 1039 IAQRQEQIENQYRSLLDLAEERKRKLEERCKEFL-LAREANDLAEWIQEKEAENTEV--DLEQVEVLQKKFDDFQKDLKA 1115 (2399)
T ss_pred HHhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHhccc--cHHHHHHHHHHHHHhhhhhcc
Confidence 0 0000 111112222111111 1256678899999999888877 888999999999999999999
Q ss_pred HHHHHHHHHhhccccccCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q psy4474 1192 YEAILATASDKGDQLSSDGTISDRNEITEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAV 1271 (2174)
Q Consensus 1192 ~~~~l~~~~~~~~~L~~~~~~~~~~~i~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~l~~f~~~~~~~~~wl~~~~~~l 1271 (2174)
.++.|..++.-+..|.+.|.......|.. .+...|..|...-++....+.... .++.|.++.++...|+.+...++
T Consensus 1116 ne~rLre~n~vAd~l~~~g~t~~~~~irq---qln~rw~~Lqr~~~E~~q~lgsah-evq~fhrd~detk~~i~ek~~al 1191 (2399)
T KOG0040|consen 1116 NEVRLRDINKVADDLTSEGQTEEAAQIRQ---QLNARWRSLQRLAEERRQLLGSAH-EVQRFHRDADETKEWIEEKCQAL 1191 (2399)
T ss_pred ChHHHHHHHHHHHhccccccCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999999999999885444333332 366777777777777766666555 48999999999999999988888
Q ss_pred CCchhhhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhcchhhhhhccchhhhhhHHHHHHhhhhhchh
Q psy4474 1272 PSSSRLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVKTLPVLLLEVTSVDVELDKQRLELATKEVQPY 1351 (2174)
Q Consensus 1272 ~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 1351 (2174)
.+ .+++.++.++..++.+++.+...+.. |..+++.+......+... ++ ..++.++..-.++
T Consensus 1192 ~~-~d~g~dl~svQalqrkheg~erdla~-----------L~Dkvt~l~e~a~rLtqs---hp----~~aeq~q~qk~el 1252 (2399)
T KOG0040|consen 1192 NA-DDPGSDLRSVQALQRKHEGFERDLAA-----------LGDKVTSLGETAERLSQS---HP----DAAEDLQRKQMEL 1252 (2399)
T ss_pred cc-ccccchHHHHHHHHHHhccchhchHH-----------HhhHHHHHHHHHHHhhhc---CC----chHHHHHHHHHHH
Confidence 65 47888899999999999865543333 333332222222222111 11 1234456666677
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccchHHHHHHHHHHHhhcchhhhhhH
Q psy4474 1352 VQRYETLKKNIAEAIDKFETQANEHEAYKQAYNEAYDWLRKAKLGAQANADCHGEQQTTKDKADKIKQITKSLPEGQKLI 1431 (2174)
Q Consensus 1352 ~~~w~~L~~~~~~R~~~L~~a~~~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~~~~el~~~~~~v 1431 (2174)
+..|.+|......|+.+|..+ ..+++|.....++..|+..+...+.+. ....|.....+.++.|+....+++.+.+.+
T Consensus 1253 ne~w~dl~s~~~~Rkekl~ds-~d~~rfLs~~rdl~~wi~sm~~lvss~-ela~d~tg~eAllerhqe~rte~daRa~tf 1330 (2399)
T KOG0040|consen 1253 NEAWEDLQGRAKDRKEKLLDS-YDLQRFLSDYRDLMNWINSIGGLVSSQ-ELANDVTGAEALLERHQEHRTEIDARAGTF 1330 (2399)
T ss_pred HHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHhcchhhhH-HHhhhhhhHHHHHHHHHHhhhHHHHHHHHH
Confidence 899999999999999999999 567899999999999999998877764 556788889999999999999999999999
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy4474 1432 DKTVALKNNVLESTGPIGKENINQEINQITLDWTNLQNTLQDIDKHHAKCLSLWNDFLSSKNTLEKWIEGFQKKIESEKD 1511 (2174)
Q Consensus 1432 ~~l~~~~~~L~~~~~~~~~~~i~~~l~~L~~~W~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~L~~~~~ 1511 (2174)
+.+..+|+.++..++.. .+.|..+++.+...-..|..++..|+..|.++++ ++-|..++.+...||..-|..++.+.+
T Consensus 1331 qA~eqf~~~ll~~~h~A-s~eie~kl~~~~l~r~~le~awv~rr~~ldq~le-lqLf~~dceq~e~~maare~~l~dD~~ 1408 (2399)
T KOG0040|consen 1331 QAFEQFGNELLDSGHYA-SPEIEKKLQAVKLERDDLEKAWVKRRKILDQCLE-LQLFQRDCEQAESWMSAREAFLADDKS 1408 (2399)
T ss_pred HHHHHHHHHHHhccCcC-CHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhh-HHHHHhhhHHHHHHHHHHHHhhccccc
Confidence 99999999999988864 7889999999999999999999999999999998 889999999999999999999954444
Q ss_pred CCCCCchHhHHHHHHHHHhhhhhhchhhHHHHHhhhhhhhhhcccCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q psy4474 1512 IGDCTNLDDLEKYKALLQEGLHKEADNKKVLIDSFNKGIIGMTELESEEVKDLIQVGVHGLQVELNALLQNIEAEINKVA 1591 (2174)
Q Consensus 1512 ~~~~~~~~~l~k~~~l~~ei~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~ 1591 (2174)
..++.+..+++|..+-.-|.. +...+..+.-.+..++.. ++++++.|..+...+.+||..+...+.+.+.+|.
T Consensus 1409 -s~D~veAl~kk~edfdkAi~~-----qeqkit~l~~~a~~lia~-~hya~e~i~~~R~~vlDrwr~lk~~Li~krtklg 1481 (2399)
T KOG0040|consen 1409 -SLDSVEALIKKHEDFDKAINA-----QEEKIAALQHFAESLIAD-NHYAKEEIATRRQQVLDRWRALKAQLIEKRSKLG 1481 (2399)
T ss_pred -ccchHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 555555778888888887776 455677777777777764 6788999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----hhcCCHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhcccCCCCCchH
Q psy4474 1592 NAAQERKAMQDKISKLQSWLKQYI-----DYSGNKQALQSRLDKVNEIQESFPEISTKLQTLSDHIENSSRKLPSRTNEA 1666 (2174)
Q Consensus 1592 ~~~~~~~~f~~~~~~l~~wl~~~e-----~~~~d~~~~~~~l~k~~~~~~el~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 1666 (2174)
..-. .++|.+++.+++.|+.+.. ..+.||.+++.+-.+|+.|.++|.++..++..+...|.+++..........
T Consensus 1482 ~~qT-lqqf~rd~deiE~wi~Ek~~~a~eesykD~tniq~k~qk~qaf~~el~~~sd~i~~vi~~gN~lie~~c~g~e~a 1560 (2399)
T KOG0040|consen 1482 DSQT-LQQFSRDADEIENWISEKLQTACDESYKDPTNIQSKHQKHQAFEAELHANSDRIHGVINMGNSLIERSCDGNEDA 1560 (2399)
T ss_pred HHHH-HHHHHhhHHHHHHHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccchhhhcccHHH
Confidence 8765 7889999999999999954 457899999999999999999999999999999999999988732233356
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHhhHHHHHhhhcccc
Q psy4474 1667 MYRDLANLRYDFEKCVSSLSDVKQGLESRLVQWNEYETSLGKLITWLNDTENVLKNFTLQPTLNEKKQQRELKGKLSSWC 1746 (2174)
Q Consensus 1667 i~~~l~~l~~~w~~L~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~~~e~~L~~~~~~~~~~~~~~~~~~~~~l~~~~ 1746 (2174)
+..+++.+...|.-+......+..+|.++. ..+.|...+.++..|+.+++..|.+
T Consensus 1561 ~~~~l~~l~d~w~~l~~~t~ek~~klKea~-kq~~f~t~Ikd~~fwl~eve~ll~~------------------------ 1615 (2399)
T KOG0040|consen 1561 VKARLEQLADQWDHLVEKTTEKSKKLKEAN-KQQRFNTAIKDLEFWLSEVETLLAS------------------------ 1615 (2399)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh------------------------
Confidence 999999999999999999999999999987 5789999999999999999998865
Q ss_pred chHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhhc----CCChHHHHHHH
Q psy4474 1747 GYEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESLH----QPSEQSKQQLA 1822 (2174)
Q Consensus 1747 ~~~~~~~~~~~wl~~~e~~l~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~l~~~~~~l~----~~~~~i~~~l~ 1822 (2174)
.++|.+++++..+|++|+.++.+|.+|.+++..+...+.++. +...++.++..
T Consensus 1616 -----------------------ed~~kdLasv~nlLkkhqlle~di~a~ed~~kd~n~qadSll~s~~f~~~~i~dkr~ 1672 (2399)
T KOG0040|consen 1616 -----------------------EDYGKDLASVGNLLKKHQLLEADIVAHEDRLKDLNTQADSLLESGQFDTDQIVEKRD 1672 (2399)
T ss_pred -----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcccchhhHHHHHH
Confidence 488999999999999999999999999999999999999983 45678999999
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhcc------------------------------cCC-cHHHHHHHHHhhHHHHHhhhhh
Q psy4474 1823 TITTRHGNVLKRAQKKIEAEKDIG------------------------------DCT-NLDDLEKYKALLQEVISHNSDM 1871 (2174)
Q Consensus 1823 ~l~~~~~~l~~~~~~r~~~l~~~~------------------------------~~~-~~~~l~~~~~l~~e~~~~~~~l 1871 (2174)
.+..++..+...|..|+++|..+. +.+ +....++|..+..++..|.+.+
T Consensus 1673 ~i~~r~~~V~~laa~~r~kl~ea~~L~qff~d~~Deeswikek~l~V~sedygrdl~gVqnl~kkhkrle~el~~hepai 1752 (2399)
T KOG0040|consen 1673 NINKRFLNVKELAAARRAKLNEALALHQFFRDIDDEESWIKEKKLLVSSDDYGRDLTGVQNLRKKHKRLEAELAAHEPAI 1752 (2399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccchhhcccchhhHHHHHHhchhhhhhhhccHHH
Confidence 999999999999999999998774 111 3466789999999999999999
Q ss_pred HhhHHHHHHHHHHh--CCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHhccccccccccc
Q psy4474 1872 ETLNDKCEALMELA--AHSPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQECDEL 1949 (2174)
Q Consensus 1872 ~~~~~~~~~l~~~~--~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~d~~ 1949 (2174)
..|...|+.+...+ ....|..++..+...|..|...+..|...|++.+.. ++|.-.+.+.++|+.+....+.+.+
T Consensus 1753 Q~v~~~~ekl~d~a~vg~~ei~~rl~~~~~~w~~lk~la~~r~~~l~es~~~-Q~f~~~~eeeEaWinek~~l~~~~d-- 1829 (2399)
T KOG0040|consen 1753 QNVLDMGEKLKDKAAVGVEEIQQRLAQFVEHWEELKELAAARGQKLEESLEY-QQFLANVEEEEAWINEKQQLLVSED-- 1829 (2399)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHhhh--
Confidence 99999999999655 556699999999999999999999999999998875 5699999999999999999888887
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHhhhhhhcCCCcchhHHHHHHHHHH-------HHHHHHhhhcC-
Q psy4474 1950 EAGIKEEQKNIETQYLQWNSFRETLAQMTAWLDSVEKNIKQEIATPWTTTQELRSKLLKLK-------EILKKCEKGVG- 2021 (2174)
Q Consensus 1950 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~-------~~l~~~~~~~~- 2021 (2174)
.+..+..++.+...++.+...-.....++..+-.....++....-..+.+..++..+. .....+...+.
T Consensus 1830 ---~gd~laaiq~Ll~kh~a~e~d~~~hK~rV~~~~~~g~dll~~~~h~~~~I~sk~~~l~~k~~~l~~~~~~~k~kl~d 1906 (2399)
T KOG0040|consen 1830 ---YGDTLAAVQGLLKKHEAFETDFTVHKDRVQDVCAQGEDLINKVNHHEEQISSKCEQLNEKLPSLEKAAAARKAQLED 1906 (2399)
T ss_pred ---hHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhchHHHHHHhhhhhhHHHHHHHHHhhcchhHHHHHHhHHHhhhh
Confidence 8888999999999988887653333333332222222232222222223444433322 22222222221
Q ss_pred --ChhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHhhHHHHhcCCCCCCc
Q psy4474 2022 --DHEAFVDKYEECSQKLAQVEAKYAKLIEPETSYEELQKRQGQLTALLTEKVDMDVL-LNACVDLCDKVYESTSEPGHE 2098 (2174)
Q Consensus 2022 --~~~~f~~~~~~l~~wl~~~e~~l~~~~~~~~d~~~~~~~~~~~~~l~~~~~~~~~~-v~~~~~~~~~ll~~~~~~~~~ 2098 (2174)
...+|.....-+.+|+.+.+..+.. ..+|+|+.+++..+..-..|-.-+..|..+ +..+.+.-+.|+..-|. .+.
T Consensus 1907 n~a~~qf~wk~dVveswi~~ke~~~k~-e~~G~dl~~~q~ll~kQ~T~dasl~aF~QE~~~~itelkdql~~a~hn-QSd 1984 (2399)
T KOG0040|consen 1907 NSAFLQFNWKADVVESWIADKENSLKT-DDFGRDLSSVQTLLTKQETFDAGLQAFQQEGIPNITALKDQLISAQHN-QSK 1984 (2399)
T ss_pred hHHHHHhhhhhhhhHHhhhhHHHHHHh-hhhhhhHHhhhhHhhHHHHHHhhhhhhHHHhHhhHHHHHHHHHHHHhc-ccH
Confidence 1347888888889999999988865 559999999888888877777777776633 34455556666665553 345
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhh
Q psy4474 2099 PLRVQMEKLQQAVEALYDKITVTE 2122 (2174)
Q Consensus 2099 ~i~~~~~~l~~~w~~L~~~~~~R~ 2122 (2174)
+|..+...+-.+|..+......|+
T Consensus 1985 Ai~kr~l~l~~rw~~l~~~s~~~~ 2008 (2399)
T KOG0040|consen 1985 AIEKRHAALIKRWQQLLAASAARR 2008 (2399)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHH
Confidence 799999999999999998888887
No 4
>KOG0040|consensus
Probab=100.00 E-value=1.9e-94 Score=875.59 Aligned_cols=1683 Identities=13% Similarity=0.185 Sum_probs=1398.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhchHHHhhhhhhchhhHHHHH
Q psy4474 169 KDQALEKAIVSVNKRYEDLVDGILKTISQLEESLDIFQQFQQLQKAYQEDQKQLWDKLSSLTERELKGKLSSWCGYEESV 248 (2174)
Q Consensus 169 ~~~~i~~~~~~l~~r~~~l~~~~~~r~~~L~~~~~~~q~~~~~~k~~~~~~~~~~~~l~~~~~~~l~~~l~~w~~f~~~~ 248 (2174)
.+++|+++-..+..||..++..+..|+.+|+++..+.= |.+++
T Consensus 11 taediqerrq~vl~~y~~fk~~~~~~~~kleds~~~q~-------------------------------------fkrda 53 (2399)
T KOG0040|consen 11 TAEDIQERRQEVLTRYQSFKERSAERRQKLEDSYRFQY-------------------------------------FKRDA 53 (2399)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------------------------------------HhcCH
Confidence 46899999999999999999999999999999987755 99999
Q ss_pred HHHHHHHHHHHhhhccccccCCCHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhcCCChHH----HHHHHHHHHHH
Q psy4474 249 ATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESLHQPSEQS----KQQLATITTRH 324 (2174)
Q Consensus 249 ~~l~~WL~e~e~~l~~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~----~~~~~~l~~r~ 324 (2174)
++|..||.++-..+. +....||..++..+++|+.|+.++.+|...+..|...|..++..+|.. ..++.+|...|
T Consensus 54 del~~wi~ekl~~~~--~~~y~dptnlq~k~qkhqa~eaevqa~s~~i~~ld~t~~~~~~~~h~a~e~~~~~l~el~~lw 131 (2399)
T KOG0040|consen 54 DELEKWIMEKLQIAS--DESYRDPTNLQGKIQKHQAFEAEVQAHSRAIVELDKTGNEMITMGHFASEEIKARLEELHHLW 131 (2399)
T ss_pred HHHHHHHHHHHHhhh--hcccCCchhHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 999999998765444 456689999999999999999999999999999999999998877643 67899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHhhHHHHHHHHHHHHHHHhhhhhhHHHHh
Q psy4474 325 GNVLKRAQKFTEAYEGIVSIHQAYTKAVLDTQEWIDATYNAVNMWGDLTLERVSLHSNLERLKNLEKELGRIGHKTVALK 404 (2174)
Q Consensus 325 ~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~~~~Wl~~~~~~l~~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~~~~l~ 404 (2174)
.-|.....+++-+|..++. +..|.+.|.++..||.+++..+.+ .++|.|++++.-+.+++..|..++..++.++..++
T Consensus 132 ~~l~~~~~ekg~kl~~al~-~~q~~~~c~~i~~wi~dke~~~t~-~e~g~d~e~~evl~~kf~~f~~~~~~~e~rv~evn 209 (2399)
T KOG0040|consen 132 DLLLEKLLEKGIKLLQALK-LVQYLRECEDILEWIGDKEAIVTS-EELGQDLEHVEVLQKKFEDFQKELAAHEYRVNEVN 209 (2399)
T ss_pred HHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHhccchheeeH-HHhcccHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Confidence 9999999999999999875 567999999999999999887765 57899999999999999999999999999999988
Q ss_pred h--hhhhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCC-
Q psy4474 405 N--NVLESTGPIGKENINQEINQITLDWTNLQNTLQVIDKHHAKCLSIWNDFLSSKNTLEKWIEGFQKKIEAEKDIGDC- 481 (2174)
Q Consensus 405 ~--~~l~~~~~~~~~~i~~~~~~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~~~~~~l~~~~~~~~~- 481 (2174)
. ..+...++++.+.|..+.++++..|..|..++-.|...|-.+.. .++|..++++..+||.+++..+.++++|.+.
T Consensus 210 q~a~~~~~e~h~e~~~i~~k~~evn~aw~rl~~la~~rq~~l~~a~~-~qrf~rd~~et~~wi~ek~~~l~sddygrdl~ 288 (2399)
T KOG0040|consen 210 QYADKLVEEGHPELDLIQKKQDEVNAAWQRLKGLALQRQEKLFGAAE-VQRFNRDVDETIAWIKEKEPVLSSDDYGRDLA 288 (2399)
T ss_pred HHHHHHHHcCCCchHHHHHhHHHHHHHHHHHHHHHHHHHHhhccHHH-HHHhcccHHHHHHHHhhccccccccccchhHH
Confidence 3 55666788889999999999999999999999999999999875 5699999999999999999999999998654
Q ss_pred CcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy4474 482 TNLDDLEKYKALLQEVISHNSDMETLNDKCEALMELAAH--SPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFL 559 (2174)
Q Consensus 482 ~~~~~l~~~k~l~~ei~~~~~~l~~l~~~~~~L~~~~~~--~~i~~~~~~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f~ 559 (2174)
.+.++..+|+.+..++.+.+.+|..|...+..|....|+ +.|+.+-..+...|+.+...+..|...|...+..+ .|.
T Consensus 289 ~~q~l~~~h~g~erdla~l~~kv~~l~~~a~~l~~~hp~~a~qi~~~~~~~~~~w~~~~~~a~~r~~~l~~s~~~h-rf~ 367 (2399)
T KOG0040|consen 289 SVQALQRKHEGLERDLAALEDKVKELCAEAEKLTLSHPDDAPQIQEKKEDLVSSWEHIRTLATERKEKLQASYWLH-RFL 367 (2399)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHh
Confidence 478899999999999999999999999999999888665 56899999999999999999999999999887554 799
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHhccccChhHHHHHHHHHHHhccCCCchhHHHHHHHHHHH
Q psy4474 560 AKKEEVEAWLHKAHATVQECAGNGSKNVLKERLDTVNMVAERIPEGQHLMSVLQDTFTKALDTTPSDQQDSLREAMTVLR 639 (2174)
Q Consensus 560 ~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~el~~~~~~l~~l~~~~~~l~~~~~~~~~~~i~~~~~~l~ 639 (2174)
.++.+|..|++.+.+.+...+.+.|+..++..|..|+.+..+|.++...+..-...|..++..+++. .+.++.++..+.
T Consensus 368 ad~rdL~~w~~~~~aaInadel~~dvag~e~lL~~hqEhK~eIds~~dSf~~~~~~gq~l~~~~~~a-s~ev~ekl~~le 446 (2399)
T KOG0040|consen 368 ADFRDLSSWINEMKAAINADELAKDVAGAEALLDRHQEHKGEIDAREDSFKSADESGQKLVEAGHYA-SDEVREKLEILD 446 (2399)
T ss_pred hhHHHHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhccccHHHHHccccc-cHHHHHHHHHHh
Confidence 9999999999999999988888999999999999999999999999999999999999999888754 457999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhCCCCCcccccchhhhhHHhhhhHHhhhhhhhhHHH
Q psy4474 640 DSWDRLNRDLKSTSTQLKSYIARWNELDDLYNRFNMWLSGVENKLNEPSPVFTEIDLNTKWQQYVNDELEWENHSQNTLQ 719 (2174)
Q Consensus 640 ~~w~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 719 (2174)
..|..|.+.|..|....+++... +.|.+...+...||+..+..+.+.+.+...
T Consensus 447 ~e~~~ll~lwe~r~~~yeqcmd~-~lfyrdteq~d~wmskqeafl~nedlg~sl-------------------------- 499 (2399)
T KOG0040|consen 447 NEKSALLELWEERRIQYEQCMDL-QLFYRDTEQVDTWMSKQEAFLANEDLGDSL-------------------------- 499 (2399)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHhhhhcccc--------------------------
Confidence 99999999999999999999875 678888899999999999999876443332
Q ss_pred HHhhhHhHHHHHHHHHHHHHHHHHHchhChHHHHHHHHHHhhh----hhhhhhhhhHHHHHHHHHHHHHHhhHhhHHHHH
Q psy4474 720 WLDNIRSDMKTLLERSKHIVDDIEKKKDDLKPIQKEAQQLSEW----DSSIVPKVSDLETRWAAVKSAWDAKHSDLSSEI 795 (2174)
Q Consensus 720 ~l~~~~~~~~~~l~k~~~l~~el~~~~~~l~~l~~~~~~L~~~----~~~i~~~l~~L~~rw~~L~~~~~~r~~~L~~~l 795 (2174)
+.++.++.+|+.|+.-++.+...+..+...+..|+.. ...+..+-..+..|...+......|...|..+.
T Consensus 500 ------~S~e~l~kkhedfEks~~aQEeki~~~d~~atkli~~~hy~~~dv~~rr~~ll~rr~~l~e~a~~r~~~lk~s~ 573 (2399)
T KOG0040|consen 500 ------DSVEALLKKHEDFEKSLAAQEEKIIALDEFATKLIQGQHYAAEDVAARRDALLARRDALREKAATRRRLLKESL 573 (2399)
T ss_pred ------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4678899999999999999999999999999999885 356666777777888888888888877777665
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy4474 796 AQYSSYQNAVQDAEKWLLQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDYSSYQNAVQDAEKWLLQISFQLMAHNSLY 875 (2174)
Q Consensus 796 ~~~~~~~~~l~~l~~wl~e~~~~L~~~~~~~~~~~~~~~~~~~~~q~~~~e~~~f~~~~~~~~~~l~~~~~~~~~~~~~~ 875 (2174)
.++.|..++.++..|+.+.-..... ....++.+.....+.++.|..+++.|...+++
T Consensus 574 -~~q~~~rd~de~~~wi~Ek~~~a~d---d~y~d~~nlk~kvqk~q~fe~el~An~~r~~~------------------- 630 (2399)
T KOG0040|consen 574 -LLQQFYRDSDELKSWINEKLKTATD---ESYKDPTNLKGKVQKHQNFEKELAANKSRLED------------------- 630 (2399)
T ss_pred -HHHHHHhhHHHHHHHHHHHhccccc---ccccCCCChhHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 5788999999999999874333222 22233444555666666666665555443322
Q ss_pred hhchHHhHHHHHHHHHhhhhhhcCcCCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q psy4474 876 INNRQQTLEQIQHHEKLLQDVILSPDNKLAPCFSAEEGSPIKDKIDRLEKETKAQSDRIQDALKTLNQLIGHRKEFEVDV 955 (2174)
Q Consensus 876 l~~~~~~l~~i~~~~~~~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~L~~~~~~l~~~~~~r~~~L~~~~~~~~~f~~~~ 955 (2174)
++..+.+.. .. .......|-.++..+...|..+.+....++.+|..+. ..++|.+.+
T Consensus 631 --------------------i~~~g~~~i-~~-~h~A~d~v~~r~~ev~~Lw~~l~~aT~~kg~kl~ea~-qq~qf~~n~ 687 (2399)
T KOG0040|consen 631 --------------------IQKTGQELI-EG-GHYAADNVTTRLSEVASLWEELLEATKKKGTKLREAN-QQQQFNRNI 687 (2399)
T ss_pred --------------------HHHhHHHHH-Hh-hhHHHHHHhHhHHHHHHHHHHHHhhcccccHHHHHHH-HhhhhhccH
Confidence 211111111 10 1234456788999999999999999999999999996 467888899
Q ss_pred HHHHHHHHHhHHhhccccccCChHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhhhhh-ccChhchhhHHHHHHHHHHHHH
Q psy4474 956 ENVEAKLKELEVAVEGDVKTNNVLMLQELLNKYAQLNEEAGELNMMISNVSIATEHM-NLNDADRLTVNDSVSSMQKRYA 1034 (2174)
Q Consensus 956 ~~~~~WL~e~e~~l~~~~~~~d~~~l~~~l~k~~~l~~ei~~~~~~v~~l~~~~~~L-~~~~~~~~~i~~~~~~L~~rw~ 1034 (2174)
++++-|+.+.+..+.++++|.++..++++.++|-.|..++..|...|..+...+..+ ..+|+++..|..+...|..||.
T Consensus 688 edve~wl~e~e~ql~sed~gkdl~~vqn~~kk~~lLe~~v~a~~d~vd~~~~~a~~fee~~h~da~~i~~kqe~L~~r~e 767 (2399)
T KOG0040|consen 688 EDIELWLSEVEGQVASEDYGKDLTSVQNLQKKHGLLESDVAAHQDRVDGITDLAAQFQEIGHFDAKNIRAKQENLVARYE 767 (2399)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998888777 7799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCChHHHHHHHHHHHHHHHHHHhhcCCCChhhHHH
Q psy4474 1035 QLSRTIEDRISTVNNKLQSVKRLQHKVEEAKALLQKAESQLARPVSTQAEDISEALTVYQKLLDEINSWKNSQSDEDLVH 1114 (2174)
Q Consensus 1035 ~L~~~~~~R~~~Le~~l~~~~~f~~~~~~~~~wl~~~e~~l~~~~~~~~~~~~~~l~~~~~l~~el~~~~~~~~~~~~~~ 1114 (2174)
.+..+..+|+++|-+.+... .+..++.....|+.+.|..-.
T Consensus 768 al~dp~a~rk~Kl~d~l~~~-~l~rd~edE~awi~E~E~~a~-------------------------------------- 808 (2399)
T KOG0040|consen 768 ALKEPLATRKQKLLDSLQLQ-QLFRDTEDEEAWIREKEPIAA-------------------------------------- 808 (2399)
T ss_pred hhhchhHHHHHHHHHHhhhh-hhhhchHHHHHHHhhcchhcc--------------------------------------
Confidence 99999999999999988754 455567888899999884321
Q ss_pred HHHHhhcHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHhHHHHHH
Q psy4474 1115 LADSIKPLDEVVERIENHAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKIIADIQEYEA 1194 (2174)
Q Consensus 1115 l~~~~~~l~~~~~~~~~~~~~~L~~~~~~~~~f~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~el~~~~~ 1194 (2174)
....|+++-.++.++++|+.+.++|..+.+
T Consensus 809 --------------------------------------------------st~~gkdlI~~qnl~~k~q~~~~~ia~he~ 838 (2399)
T KOG0040|consen 809 --------------------------------------------------STNRGKDLIGVQNLLKKHQALLAEIANHEP 838 (2399)
T ss_pred --------------------------------------------------chhcchhHHHHHHHHHHHHHHHHHHhcccH
Confidence 123577778899999999999999999999
Q ss_pred HHHHHHhhccccccCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc
Q psy4474 1195 ILATASDKGDQLSSDGTISDRNEITEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVPSS 1274 (2174)
Q Consensus 1195 ~l~~~~~~~~~L~~~~~~~~~~~i~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~l~~f~~~~~~~~~wl~~~~~~l~~~ 1274 (2174)
.+..+.+.|..|+..||+. ++.+..++..|++.|..+......++..++.... .++|...+.+...|+.+.++.+.+
T Consensus 839 ri~~i~~r~~~m~~~~~f~-aedvk~~~~~L~~~~~slk~ka~~r~~dle~s~q-~~qy~ad~~eae~w~~ekEpi~~s- 915 (2399)
T KOG0040|consen 839 RIQEVTSRGNKMVEEGHFA-AEDVRSRLKSLNQNWESLKAKASQRRQDLEDSLQ-AQQYLADANEAESWMREKEPIVGS- 915 (2399)
T ss_pred HHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH-HHHHHHHHhhHHHHhhccCccccc-
Confidence 9999999999999999876 5788888888888888888777777776766664 678999999999999998877654
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh---hhhhhhcchhh-----------------------h--
Q psy4474 1275 SRLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHA---RETAVKTLPVL-----------------------L-- 1326 (2174)
Q Consensus 1275 ~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~l~~~-----------------------~-- 1326 (2174)
.+|+.+...-+.+.+.|+++...++.++.++..+-+.... ..+.+...+.. +
T Consensus 916 tdygKdedsa~allkkhea~~~dl~af~~~i~~lr~qa~~cq~Q~tpv~~~g~~~v~alyd~q~kSprev~mKkgDvltl 995 (2399)
T KOG0040|consen 916 TDYGKDEDSAEALLKKHEALLSDLEAFGDSIQALREQANACRQQEAPVEDVGKECVLALYDYQEKSPREVTMKKGDVLTL 995 (2399)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHhhhhHHHH
Confidence 4788888888889999998888888877776554433322 11111111000 0
Q ss_pred ----------------hhccchh-------hhhhHHH---HHHhhhhhchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1327 ----------------LEVTSVD-------VELDKQR---LELATKEVQPYVQRYETLKKNIAEAIDKFETQANEHEAYK 1380 (2174)
Q Consensus 1327 ----------------~~~~~~~-------~~~~~~~---~~~~~~~l~~l~~~w~~L~~~~~~R~~~L~~a~~~~~~f~ 1380 (2174)
..+.++. ...+++. ...+..+-+.+..+|..|.....+|+.+|......+. ..
T Consensus 996 l~s~nkdwwkve~~d~qg~vpa~yvk~~~~~~~~~~~l~~~~~i~~rq~qi~~qyr~lld~~~er~~~l~k~~ke~~-l~ 1074 (2399)
T KOG0040|consen 996 LNSINKDWWKVEVNDRQGFVPAAYVKRLDPGSASQPNLRREESIAQRQEQIENQYRSLLDLAEERKRKLEERCKEFL-LA 1074 (2399)
T ss_pred HhhcccccccchhhhhcCcchHHHHHHhccCCcchHHHHHHHHHHhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHH-HH
Confidence 0000000 0000111 1223344556777899999999999999999977664 44
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCccchHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHhhcChhhHHHHHHHHHHH
Q psy4474 1381 QAYNEAYDWLRKAKLGAQANADCHGEQQTTKDKADKIKQITKSLPEGQKLIDKTVALKNNVLESTGPIGKENINQEINQI 1460 (2174)
Q Consensus 1381 ~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~~i~~~l~~L 1460 (2174)
.+..++..||.+.+... .++ +.+.|...+.+|..|+.++..+.+++..++..+..|.+.+.......|++. +
T Consensus 1075 ~ea~dl~~wi~ekE~~~---~~v--dle~V~~lqkKfddf~~dlkane~rLre~n~vAd~l~~~g~t~~~~~irqq---l 1146 (2399)
T KOG0040|consen 1075 REANDLAEWIQEKEAEN---TEV--DLEQVEVLQKKFDDFQKDLKANEVRLRDINKVADDLTSEGQTEEAAQIRQQ---L 1146 (2399)
T ss_pred HHhhhhHHHHHHHHHHh---ccc--cHHHHHHHHHHHHHhhhhhccChHHHHHHHHHHHhccccccCHHHHHHHHH---H
Confidence 66788999999998332 233 888999999999999999999999999999999999887755555666665 8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCchHhH-HHHHHHHHhhhhhhchhh
Q psy4474 1461 TLDWTNLQNTLQDIDKHHAKCLSLWNDFLSSKNTLEKWIEGFQKKIESEKDIGDCTNLDDL-EKYKALLQEGLHKEADNK 1539 (2174)
Q Consensus 1461 ~~~W~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~L~~~~~~~~~~~~~~l-~k~~~l~~ei~~~~~~~~ 1539 (2174)
+.+|..|.....+|.+.|-.+.. ++.|+.+..+...|+.++-..|+..+++........+ .+|..+.+++.+ -
T Consensus 1147 n~rw~~Lqr~~~E~~q~lgsahe-vq~fhrd~detk~~i~ek~~al~~~d~g~dl~svQalqrkheg~erdla~-----L 1220 (2399)
T KOG0040|consen 1147 NARWRSLQRLAEERRQLLGSAHE-VQRFHRDADETKEWIEEKCQALNADDPGSDLRSVQALQRKHEGFERDLAA-----L 1220 (2399)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHH-HHHHHHhhHHHHHHHHHHHHhhccccccchHHHHHHHHHHhccchhchHH-----H
Confidence 99999999999999999999987 9999999999999999999999997766544443333 478888888776 3
Q ss_pred HHHHHhhhhhhhhhcccCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---
Q psy4474 1540 KVLIDSFNKGIIGMTELESEEVKDLIQVGVHGLQVELNALLQNIEAEINKVANAAQERKAMQDKISKLQSWLKQYID--- 1616 (2174)
Q Consensus 1540 ~~~~~~l~~~~~~l~~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~wl~~~e~--- 1616 (2174)
...|..+.+.+..|.. .+|..++.++.+.-.++..|..|......|..+|..+++ ++.|..++.++..|+..+..
T Consensus 1221 ~Dkvt~l~e~a~rLtq-shp~~aeq~q~qk~elne~w~dl~s~~~~Rkekl~ds~d-~~rfLs~~rdl~~wi~sm~~lvs 1298 (2399)
T KOG0040|consen 1221 GDKVTSLGETAERLSQ-SHPDAAEDLQRKQMELNEAWEDLQGRAKDRKEKLLDSYD-LQRFLSDYRDLMNWINSIGGLVS 1298 (2399)
T ss_pred hhHHHHHHHHHHHhhh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHhcchhh
Confidence 5568888877777765 577888999999999999999999999999999999998 78899999999999999742
Q ss_pred ---hcCCHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHhHH
Q psy4474 1617 ---YSGNKQALQSRLDKVNEIQESFPEISTKLQTLSDHIENSSRKLPSRTNEAMYRDLANLRYDFEKCVSSLSDVKQGLE 1693 (2174)
Q Consensus 1617 ---~~~d~~~~~~~l~k~~~~~~el~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~l~~l~~~w~~L~~~~~~r~~~L~ 1693 (2174)
...|......+++.|+....+++...+.+.++.+.|..++.. +|.++..|..++..+...-.++...+..|...|+
T Consensus 1299 s~ela~d~tg~eAllerhqe~rte~daRa~tfqA~eqf~~~ll~~-~h~As~eie~kl~~~~l~r~~le~awv~rr~~ld 1377 (2399)
T KOG0040|consen 1299 SQELANDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGNELLDS-GHYASPEIEKKLQAVKLERDDLEKAWVKRRKILD 1377 (2399)
T ss_pred hHHHhhhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc-cCcCCHHHHHHHHHHHhhccchHHHHHHHHHHHH
Confidence 245788899999999999999999999999999999999984 7888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHhhHHHHHhhhccccchHHHHHHHHHHHHHHHhhcccccccc
Q psy4474 1694 SRLVQWNEYETSLGKLITWLNDTENVLKNFTLQPTLNEKKQQRELKGKLSSWCGYEESVATLLDWLKVTEKKLGDEMELK 1773 (2174)
Q Consensus 1694 ~~~~~~~~f~~~~~~l~~Wl~~~e~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~wl~~~e~~l~~~~~~~ 1773 (2174)
+++ ..+-|..+|...+.|+...+..|.. +.+
T Consensus 1378 q~l-elqLf~~dceq~e~~maare~~l~d------------------------------------------------D~~ 1408 (2399)
T KOG0040|consen 1378 QCL-ELQLFQRDCEQAESWMSAREAFLAD------------------------------------------------DKS 1408 (2399)
T ss_pred hhh-hHHHHHhhhHHHHHHHHHHHHhhcc------------------------------------------------ccc
Confidence 999 6889999999999999999998732 334
Q ss_pred ccHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhh----cCCChHHHHHHHHHhhhHHHHHHHHHHHHhhhhhcc---
Q psy4474 1774 TTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESL----HQPSEQSKQQLATITTRHGNVLKRAQKKIEAEKDIG--- 1846 (2174)
Q Consensus 1774 ~~~~~v~~~l~~~~~~~~~l~~~~~~~~~l~~~~~~l----~~~~~~i~~~l~~l~~~~~~l~~~~~~r~~~l~~~~--- 1846 (2174)
..+.+.+++++|+.|...|..+...+..+.-.+..+ +..++.+..+...+..+|..++....+.+.++-+..
T Consensus 1409 -s~D~veAl~kk~edfdkAi~~qeqkit~l~~~a~~lia~~hya~e~i~~~R~~vlDrwr~lk~~Li~krtklg~~qTlq 1487 (2399)
T KOG0040|consen 1409 -SLDSVEALIKKHEDFDKAINAQEEKIAALQHFAESLIADNHYAKEEIATRRQQVLDRWRALKAQLIEKRSKLGDSQTLQ 1487 (2399)
T ss_pred -ccchHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 678899999999999999999999999999999998 466788999999999999999887776666654331
Q ss_pred --------------------------cCC-cHHHHHHHHHhhHHHHHhhhhhHhhHHHHHHHHHHh---CCCCCcHHHHH
Q psy4474 1847 --------------------------DCT-NLDDLEKYKALLQEVISHNSDMETLNDKCEALMELA---AHSPIREETLR 1896 (2174)
Q Consensus 1847 --------------------------~~~-~~~~l~~~~~l~~e~~~~~~~l~~~~~~~~~l~~~~---~~~~i~~~~~~ 1896 (2174)
|++ ....-++|++|..++..+...+.++++.|..++... ....++.+++.
T Consensus 1488 qf~rd~deiE~wi~Ek~~~a~eesykD~tniq~k~qk~qaf~~el~~~sd~i~~vi~~gN~lie~~c~g~e~a~~~~l~~ 1567 (2399)
T KOG0040|consen 1488 QFSRDADEIENWISEKLQTACDESYKDPTNIQSKHQKHQAFEAELHANSDRIHGVINMGNSLIERSCDGNEDAVKARLEQ 1567 (2399)
T ss_pred HHHhhHHHHHHHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccchhhhcccHHHHHHHHHH
Confidence 222 346678999999999999999999999999999775 45678999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhHHHHHHHHHH
Q psy4474 1897 LQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQECDELEAGIKEEQKNIETQYLQWNSFRETLAQ 1976 (2174)
Q Consensus 1897 l~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~d~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 1976 (2174)
+..+|.-+-.....+...|.++..+. .|...+.+++-|+.+++..+.+.+ ++.++..+..+..++.-+.....+
T Consensus 1568 l~d~w~~l~~~t~ek~~klKea~kq~-~f~t~Ikd~~fwl~eve~ll~~ed-----~~kdLasv~nlLkkhqlle~di~a 1641 (2399)
T KOG0040|consen 1568 LADQWDHLVEKTTEKSKKLKEANKQQ-RFNTAIKDLEFWLSEVETLLASED-----YGKDLASVGNLLKKHQLLEADIVA 1641 (2399)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998865 499999999999999999999888 777777777777777666555444
Q ss_pred HHHHHhhhhHhhhhhhcCCCcchh--------------HHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHHHH
Q psy4474 1977 MTAWLDSVEKNIKQEIATPWTTTQ--------------ELRSKLLKLKEILKKCEKGVGDHEAFVDKYEECSQKLAQVEA 2042 (2174)
Q Consensus 1977 l~~~~~~~~~~~~~l~~~~~~~~~--------------~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~l~~wl~~~e~ 2042 (2174)
....+..++....++..+...... .+...+..++..|-.++. ..+|++.+.+..+||.++..
T Consensus 1642 ~ed~~kd~n~qadSll~s~~f~~~~i~dkr~~i~~r~~~V~~laa~~r~kl~ea~~----L~qff~d~~Deeswikek~l 1717 (2399)
T KOG0040|consen 1642 HEDRLKDLNTQADSLLESGQFDTDQIVEKRDNINKRFLNVKELAAARRAKLNEALA----LHQFFRDIDDEESWIKEKKL 1717 (2399)
T ss_pred HHHHHhhhhHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhhHHHHHHHHHH
Confidence 444444444444433332211111 333333333333333322 23899999999999999887
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHhcCCCCCCchhhhHHHHHHHHHHHHHHhhhhhh
Q psy4474 2043 KYAKLIEPETSYEELQKRQGQLTALLTEKVDMDVLLNACVDLCDKVYESTSEPGHEPLRVQMEKLQQAVEALYDKITVTE 2122 (2174)
Q Consensus 2043 ~l~~~~~~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~ll~~~~~~~~~~i~~~~~~l~~~w~~L~~~~~~R~ 2122 (2174)
.+.+ .++|+|+..|+.+...|+.+..++..+++.+..+...|+.+.... .-+-..|..++..++..|..|...+..|.
T Consensus 1718 ~V~s-edygrdl~gVqnl~kkhkrle~el~~hepaiQ~v~~~~ekl~d~a-~vg~~ei~~rl~~~~~~w~~lk~la~~r~ 1795 (2399)
T KOG0040|consen 1718 LVSS-DDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQNVLDMGEKLKDKA-AVGVEEIQQRLAQFVEHWEELKELAAARG 1795 (2399)
T ss_pred hccc-hhhcccchhhHHHHHHhchhhhhhhhccHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6654 569999999999999999999999999999999999999998432 22334599999999999999999999999
Q ss_pred --hhhHHhHHHHHHhhcCccccHHHH
Q psy4474 2123 --SLILSQVEAKYAKLIEPETSYEEL 2146 (2174)
Q Consensus 2123 --~~~~~~~~~f~~~~~e~~~~~~~~ 2146 (2174)
+..-..-++|....++-|.|.++.
T Consensus 1796 ~~l~es~~~Q~f~~~~eeeEaWinek 1821 (2399)
T KOG0040|consen 1796 QKLEESLEYQQFLANVEEEEAWINEK 1821 (2399)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 455556678999999999999883
No 5
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=99.60 E-value=7.3e-14 Score=161.23 Aligned_cols=210 Identities=17% Similarity=0.234 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccchHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHhhcChhhHHHHHH
Q psy4474 1376 HEAYKQAYNEAYDWLRKAKLGAQANADCHGEQQTTKDKADKIKQITKSLPEGQKLIDKTVALKNNVLESTGPIGKENINQ 1455 (2174)
Q Consensus 1376 ~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~~i~~ 1455 (2174)
+..|.+.+..+..||..++..|.+..+++ ++..++.++++|+.|..++..+.+.++.+...|..|...++ .....|..
T Consensus 2 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~-d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~-~~~~~i~~ 79 (213)
T cd00176 2 LQQFLRDADELEAWLSEKEELLSSTDYGD-DLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGH-PDAEEIQE 79 (213)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCcccCC-CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCC-CChHHHHH
Confidence 46899999999999999999999876655 99999999999999999999999999999999999998776 56889999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC-CchHhHHHHHHHHHhhhhh
Q psy4474 1456 EINQITLDWTNLQNTLQDIDKHHAKCLSLWNDFLSSKNTLEKWIEGFQKKIESEKDIGDC-TNLDDLEKYKALLQEGLHK 1534 (2174)
Q Consensus 1456 ~l~~L~~~W~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~L~~~~~~~~~-~~~~~l~k~~~l~~ei~~~ 1534 (2174)
.++.|+.+|+.|+..+..|...|+.+...+..|..... +..||..++..+....+.+.. .....+..|+.|..++..
T Consensus 80 ~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~-l~~wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 157 (213)
T cd00176 80 RLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADD-LEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEA- 157 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHh-
Confidence 99999999999999999999999999997776665554 999999999999986655422 223678899999999987
Q ss_pred hchhhHHHHHhhhhhhhhhcccCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1535 EADNKKVLIDSFNKGIIGMTELESEEVKDLIQVGVHGLQVELNALLQNIEAEINKVANA 1593 (2174)
Q Consensus 1535 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~~~ 1593 (2174)
+++.+..++..|..+.....+.....|..++..+..+|..+...+..|...|+.+
T Consensus 158 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~~ 212 (213)
T cd00176 158 ----HEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKLEEA 212 (213)
T ss_pred ----chHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6888999999999999877766668899999999999999999999999988754
No 6
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=99.51 E-value=1.6e-12 Score=150.06 Aligned_cols=208 Identities=20% Similarity=0.289 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCC-CCcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccC--CcchHHH
Q psy4474 451 WNDFLSSKNTLEKWIEGFQKKIEAEKDIGD-CTNLDDLEKYKALLQEVISHNSDMETLNDKCEALMELAAH--SPIREET 527 (2174)
Q Consensus 451 ~~~f~~~~~~l~~Wl~~~~~~l~~~~~~~~-~~~~~~l~~~k~l~~ei~~~~~~l~~l~~~~~~L~~~~~~--~~i~~~~ 527 (2174)
+..|...+..+..||.+++..+....++++ ..+..++.+|+.|..++..+.+.++.+...|..|...+++ ..|...+
T Consensus 2 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~ 81 (213)
T cd00176 2 LQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERL 81 (213)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 468999999999999999999987554443 3468899999999999999999999999999999998753 5588899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHhccccCh
Q psy4474 528 LRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQECAGNGSKNVLKERLDTVNMVAERIPEGQH 607 (2174)
Q Consensus 528 ~~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~el~~~~~ 607 (2174)
..++.+|..|...+..|...|+..+..+..|.. +..+..||...+..+...+++.++..++.++..|+.|..++..+.+
T Consensus 82 ~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~-~~~l~~wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (213)
T cd00176 82 EELNQRWEELRELAEERRQRLEEALDLQQFFRD-ADDLEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEP 160 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHhchH
Confidence 999999999999999999999998877765554 4459999999999998876655899999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 608 LMSVLQDTFTKALDTTPSDQQDSLREAMTVLRDSWDRLNRDLKSTSTQLKSY 659 (2174)
Q Consensus 608 ~l~~l~~~~~~l~~~~~~~~~~~i~~~~~~l~~~w~~L~~~~~~r~~~Le~~ 659 (2174)
.+..+...|..++...+++....+...+..+..+|..|...+..+...|+.+
T Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~~ 212 (213)
T cd00176 161 RLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKLEEA 212 (213)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998877657899999999999999999999999998764
No 7
>KOG4286|consensus
Probab=99.24 E-value=2.9e-09 Score=127.08 Aligned_cols=303 Identities=14% Similarity=0.177 Sum_probs=228.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccchHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHhhcCh-hhHHHHH
Q psy4474 1376 HEAYKQAYNEAYDWLRKAKLGAQANADCHGEQQTTKDKADKIKQITKSLPEGQKLIDKTVALKNNVLESTGP-IGKENIN 1454 (2174)
Q Consensus 1376 ~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~~~~el~~~~~~v~~l~~~~~~L~~~~~~-~~~~~i~ 1454 (2174)
.+.|..++..+..|+-.....- ...-.|....+...+.++.++.++++ .+|...+..|+..... .+.-.+.
T Consensus 3 ~q~~~~~l~~f~~w~l~d~~~~---~~~l~dt~~~~~~~~~~~~~~~e~~a-----~~v~~~~~kl~~~l~~~~~~~~l~ 74 (966)
T KOG4286|consen 3 LQQFPLDLEKFLAWLLQDATRK---ERLLEDSKGVKELMKQWQDLQGEIEA-----HNLDENSQKILRSLEGSDDAVLLQ 74 (966)
T ss_pred hhhhhhhHHHHHHHHHhhhhhh---HhhhhcccccHHHHHHHhcccccccc-----ccCchHHHHHHHHhcCCccchHHH
Confidence 3568889999999994322111 11122333456677778888889887 3455556666544322 2222222
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCch--HhHHHHHHHHHhhh
Q psy4474 1455 QEINQITLDWTNLQNTLQDIDKHHAKCLSLWNDFLSSKNTLEKWIEGFQKKIESEKDIGDCTNL--DDLEKYKALLQEGL 1532 (2174)
Q Consensus 1455 ~~l~~L~~~W~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~L~~~~~~~~~~~~--~~l~k~~~l~~ei~ 1532 (2174)
.++.+|.+|.+...+-+..|+.+.+.|..++..+.++..|++-+...|...-|.+++... .+-.-|++|.+|+.
T Consensus 75 ----~mn~~w~~l~kks~~ir~~lea~~~~w~kl~~~l~el~~wl~~kd~el~~q~p~ggd~~avq~q~~~~~a~~re~k 150 (966)
T KOG4286|consen 75 ----LMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELK 150 (966)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHhcCCCCCChHHHHHHHHHHHHHHHHHh
Confidence 499999999999999999999999999999999999999999999999998888777654 34457899999998
Q ss_pred hhhchhhHHHHHhhhhhhhhhcc---------cC-----ChH-----HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1533 HKEADNKKVLIDSFNKGIIGMTE---------LE-----SEE-----VKDLIQVGVHGLQVELNALLQNIEAEINKVANA 1593 (2174)
Q Consensus 1533 ~~~~~~~~~~~~~l~~~~~~l~~---------~~-----~~~-----~~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~~~ 1593 (2174)
.+ .+.+.+..+.+...+. .. .|. -+..+......++..|..|...+....+..+.+
T Consensus 151 ~k-----~~~~~s~~e~a~~fl~~~p~e~~e~~~~~~e~~p~~r~q~~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~ 225 (966)
T KOG4286|consen 151 TK-----EPVIMSTLETARIFLTEQPLEGLEKYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDET 225 (966)
T ss_pred hc-----ccHHHHHHHHHHHHHhcCCCcchhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 85 4445444443332211 11 111 113355566889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc------CC--HHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhcccCCCCCch
Q psy4474 1594 AQERKAMQDKISKLQSWLKQYIDYS------GN--KQALQSRLDKVNEIQESFPEISTKLQTLSDHIENSSRKLPSRTNE 1665 (2174)
Q Consensus 1594 ~~~~~~f~~~~~~l~~wl~~~e~~~------~d--~~~~~~~l~k~~~~~~el~~~~~~~~~l~~~~~~l~~~~~~~~~~ 1665 (2174)
+..++.+...++++..=|.+.+... +| .+.++.-+++...|..++...+..++.|+..+..|... +-.-+.
T Consensus 226 le~l~elq~a~~el~~~l~~ae~~~~~w~pvgdl~idsl~~h~e~~~~~~~ei~p~~~~v~~vndla~ql~~~-d~~ls~ 304 (966)
T KOG4286|consen 226 LERLQELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLKENVSHVNDLARQLTTL-DIQLSP 304 (966)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhhhccccHHHHHHhHHHHHHHHHHHHHhhcchHhhchhhHHHHHHHhhhc-ccCCCh
Confidence 9999999999999999999987532 22 36778889999999999999999999999999988763 222235
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHH
Q psy4474 1666 AMYRDLANLRYDFEKCVSSLSDVKQGLESRL 1696 (2174)
Q Consensus 1666 ~i~~~l~~l~~~w~~L~~~~~~r~~~L~~~~ 1696 (2174)
.....++.++.||.-|...+..|...|..+.
T Consensus 305 ~~~~~le~~n~rwk~Lq~SV~~rl~qlrna~ 335 (966)
T KOG4286|consen 305 YNLSTLEDLNTRWKLLQVSVPDRLTQLRNAH 335 (966)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999875
No 8
>KOG4286|consensus
Probab=99.22 E-value=6.5e-09 Score=124.15 Aligned_cols=306 Identities=14% Similarity=0.234 Sum_probs=239.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccc-CCCCcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccC--CcchHHHH
Q psy4474 452 NDFLSSKNTLEKWIEGFQKKIEAEKDI-GDCTNLDDLEKYKALLQEVISHNSDMETLNDKCEALMELAAH--SPIREETL 528 (2174)
Q Consensus 452 ~~f~~~~~~l~~Wl~~~~~~l~~~~~~-~~~~~~~~l~~~k~l~~ei~~~~~~l~~l~~~~~~L~~~~~~--~~i~~~~~ 528 (2174)
+.|...+..+..|+-.- ........ +........+..+.+..+|++ ..+-..+..|...... ..+. +.
T Consensus 4 q~~~~~l~~f~~w~l~d--~~~~~~~l~dt~~~~~~~~~~~~~~~e~~a-----~~v~~~~~kl~~~l~~~~~~~~--l~ 74 (966)
T KOG4286|consen 4 QQFPLDLEKFLAWLLQD--ATRKERLLEDSKGVKELMKQWQDLQGEIEA-----HNLDENSQKILRSLEGSDDAVL--LQ 74 (966)
T ss_pred hhhhhhHHHHHHHHHhh--hhhhHhhhhcccccHHHHHHHhcccccccc-----ccCchHHHHHHHHhcCCccchH--HH
Confidence 56888899999999221 11111111 222334556677788888877 2344455555554222 2222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhh-cCCCCHHHHHHHHHHHHHHHHhccccCh
Q psy4474 529 RLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQEC-AGNGSKNVLKERLDTVNMVAERIPEGQH 607 (2174)
Q Consensus 529 ~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~-~~~~d~~~~~~~l~~~~~~~~el~~~~~ 607 (2174)
-++.+|++|.....+-+.+|+.....+..+.-.+.++..|+......+... +.++|...|+.+-.-|+.|..++....+
T Consensus 75 ~mn~~w~~l~kks~~ir~~lea~~~~w~kl~~~l~el~~wl~~kd~el~~q~p~ggd~~avq~q~~~~~a~~re~k~k~~ 154 (966)
T KOG4286|consen 75 LMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTKEP 154 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhhccc
Confidence 488999999999999999999999999999999999999999888777765 5689999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCc-------------h------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy4474 608 LMSVLQDTFTKALDTTPSD-------------Q------QDSLREAMTVLRDSWDRLNRDLKSTSTQLKSYIARWNELDD 668 (2174)
Q Consensus 608 ~l~~l~~~~~~l~~~~~~~-------------~------~~~i~~~~~~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f~~ 668 (2174)
-+-...+.+..++...+-. . ...+...-..+...|..|...+..+....+.++.+++..+.
T Consensus 155 ~~~s~~e~a~~fl~~~p~e~~e~~~~~~e~~p~~r~q~~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~ 234 (966)
T KOG4286|consen 155 VIMSTLETARIFLTEQPLEGLEKYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQE 234 (966)
T ss_pred HHHHHHHHHHHHHhcCCCcchhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHH
Confidence 9999988888877654311 0 01244555789999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHhhhCCCCCcccccchhhhhHHhhhhHHhhhhhhhhHHHHHhhhHhHHHHHHHHHHHHHHHHHHchhC
Q psy4474 669 LYNRFNMWLSGVENKLNEPSPVFTEIDLNTKWQQYVNDELEWENHSQNTLQWLDNIRSDMKTLLERSKHIVDDIEKKKDD 748 (2174)
Q Consensus 669 ~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~k~~~l~~el~~~~~~ 748 (2174)
..+++..-|...|....+..|+..-. .+.+...+++.+.|..+|.--+..
T Consensus 235 a~~el~~~l~~ae~~~~~w~pvgdl~------------------------------idsl~~h~e~~~~~~~ei~p~~~~ 284 (966)
T KOG4286|consen 235 ATDELDLKLRQAEVIKGSWQPVGDLL------------------------------IDSLQDHLEKVKALRGEIAPLKEN 284 (966)
T ss_pred HHHHHHHhhhHHHhhhhccccHHHHH------------------------------HhHHHHHHHHHHHHHhhcchHhhc
Confidence 99999999999998887776654211 256778899999999999999999
Q ss_pred hHHHHHHHHHHhhhh----hhhhhhhhHHHHHHHHHHHHHHhhHhhHHHHHH
Q psy4474 749 LKPIQKEAQQLSEWD----SSIVPKVSDLETRWAAVKSAWDAKHSDLSSEIA 796 (2174)
Q Consensus 749 l~~l~~~~~~L~~~~----~~i~~~l~~L~~rw~~L~~~~~~r~~~L~~~l~ 796 (2174)
++.+++.+.+|...+ ......+..++.||..|+..+..|..+|..+..
T Consensus 285 v~~vndla~ql~~~d~~ls~~~~~~le~~n~rwk~Lq~SV~~rl~qlrna~~ 336 (966)
T KOG4286|consen 285 VSHVNDLARQLTTLDIQLSPYNLSTLEDLNTRWKLLQVSVPDRLTQLRNAHR 336 (966)
T ss_pred hhhHHHHHHHhhhcccCCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998753 344556999999999999999999998887654
No 9
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=98.84 E-value=3.5e-08 Score=98.44 Aligned_cols=104 Identities=13% Similarity=0.376 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccchHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHhhcChhhHHHHH
Q psy4474 1375 EHEAYKQAYNEAYDWLRKAKLGAQANADCHGEQQTTKDKADKIKQITKSLPEGQKLIDKTVALKNNVLESTGPIGKENIN 1454 (2174)
Q Consensus 1375 ~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~~i~ 1454 (2174)
.++.|...++++..||..++..+... ++|.+++.+..++.+|+.|+.+|..+++.|+.|...|..|.. .+|.+.+.|+
T Consensus 2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~-~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~-~~~~~~~~i~ 79 (105)
T PF00435_consen 2 QLQQFQQEADELLDWLQETEAKLSSS-EPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLID-SGPEDSDEIQ 79 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSC-THSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-cCCCcHHHHH
Confidence 46789999999999999999999654 448999999999999999999999999999999999999955 4477899999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy4474 1455 QEINQITLDWTNLQNTLQDIDKHHAK 1480 (2174)
Q Consensus 1455 ~~l~~L~~~W~~L~~~~~~r~~~Le~ 1480 (2174)
.++..|+.+|+.|...+..|...|++
T Consensus 80 ~~~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 80 EKLEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999874
No 10
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=98.81 E-value=5.7e-08 Score=96.92 Aligned_cols=103 Identities=16% Similarity=0.303 Sum_probs=96.0
Q ss_pred HHHHhHHhHHHHHHHHHHhHHhhccccccCChHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhhhhh-ccChhchhhHHHH
Q psy4474 947 HRKEFEVDVENVEAKLKELEVAVEGDVKTNNVLMLQELLNKYAQLNEEAGELNMMISNVSIATEHM-NLNDADRLTVNDS 1025 (2174)
Q Consensus 947 ~~~~f~~~~~~~~~WL~e~e~~l~~~~~~~d~~~l~~~l~k~~~l~~ei~~~~~~v~~l~~~~~~L-~~~~~~~~~i~~~ 1025 (2174)
.++.|...++++..||..++..+.+.+.|.+++.++.++.+|+.|..++..+.+.+..+...|..| ..+|+++..|..+
T Consensus 2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~ 81 (105)
T PF00435_consen 2 QLQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEK 81 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 467899999999999999999997776799999999999999999999999999999999999998 5567889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1026 VSSMQKRYAQLSRTIEDRISTVNN 1049 (2174)
Q Consensus 1026 ~~~L~~rw~~L~~~~~~R~~~Le~ 1049 (2174)
+..|+.+|+.|+..+.+|...|++
T Consensus 82 ~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 82 LEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999974
No 11
>smart00150 SPEC Spectrin repeats.
Probab=98.79 E-value=3.7e-08 Score=97.41 Aligned_cols=99 Identities=18% Similarity=0.290 Sum_probs=92.3
Q ss_pred HhHHhHHHHHHHHHHhHHhhccccccCChHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhhhhh-ccChhchhhHHHHHHH
Q psy4474 950 EFEVDVENVEAKLKELEVAVEGDVKTNNVLMLQELLNKYAQLNEEAGELNMMISNVSIATEHM-NLNDADRLTVNDSVSS 1028 (2174)
Q Consensus 950 ~f~~~~~~~~~WL~e~e~~l~~~~~~~d~~~l~~~l~k~~~l~~ei~~~~~~v~~l~~~~~~L-~~~~~~~~~i~~~~~~ 1028 (2174)
.|..++.++..||.+++..+.+.+.|.|+..++.++++|+.|+.++..+.+.|..+...|..| ..+++++..|..++..
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~ 81 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLASEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEE 81 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 588899999999999999888888889999999999999999999999999999999999988 5678888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4474 1029 MQKRYAQLSRTIEDRISTVN 1048 (2174)
Q Consensus 1029 L~~rw~~L~~~~~~R~~~Le 1048 (2174)
|+.+|+.|+..+..|...|+
T Consensus 82 l~~~w~~l~~~~~~r~~~L~ 101 (101)
T smart00150 82 LNERWEELKELAEERRQKLE 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999998773
No 12
>smart00150 SPEC Spectrin repeats.
Probab=98.76 E-value=4.6e-08 Score=96.71 Aligned_cols=100 Identities=13% Similarity=0.286 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCccchHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHhhcChhhHHHHHHHH
Q psy4474 1378 AYKQAYNEAYDWLRKAKLGAQANADCHGEQQTTKDKADKIKQITKSLPEGQKLIDKTVALKNNVLESTGPIGKENINQEI 1457 (2174)
Q Consensus 1378 ~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~~i~~~l 1457 (2174)
.|...+..+..||.+++..+.. .++|+|++.++.++++|+.|+.+|..+++.|..+...|..|+..+++ +.+.|..++
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~~-~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~-~~~~i~~~~ 79 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLAS-EDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHP-DAEEIEERL 79 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-cHHHHHHHH
Confidence 5889999999999999988876 46678999999999999999999999999999999999999987654 678999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q psy4474 1458 NQITLDWTNLQNTLQDIDKHHA 1479 (2174)
Q Consensus 1458 ~~L~~~W~~L~~~~~~r~~~Le 1479 (2174)
..|+.+|+.|+..+..|...|+
T Consensus 80 ~~l~~~w~~l~~~~~~r~~~L~ 101 (101)
T smart00150 80 EELNERWEELKELAEERRQKLE 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998773
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.48 E-value=0.044 Score=79.86 Aligned_cols=70 Identities=14% Similarity=0.281 Sum_probs=40.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHH
Q psy4474 1562 KDLIQVGVHGLQVELNALLQNIEAEINKVANAAQERKAMQDKISKLQSWLKQYIDYS--GNKQALQSRLDKVNEI 1634 (2174)
Q Consensus 1562 ~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~wl~~~e~~~--~d~~~~~~~l~k~~~~ 1634 (2174)
...+...+..+..++..+..........++..+ ..|...++.+......+..+. +-+..+...-.++..+
T Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~ 982 (1311)
T TIGR00606 911 DSPLETFLEKDQQEKEELISSKETSNKKAQDKV---NDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTV 982 (1311)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345666777777777777777766666665544 456666666666666665443 2344344444444433
No 14
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.40 E-value=0.059 Score=77.45 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=29.5
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHhhHH-HHhcCC----CCCCchhhhHHHHHHHHHHHHHHhhh
Q psy4474 2062 GQLTALLTEKVDMDVLLNACVDLCDK-VYESTS----EPGHEPLRVQMEKLQQAVEALYDKIT 2119 (2174)
Q Consensus 2062 ~~~~~l~~~~~~~~~~v~~~~~~~~~-ll~~~~----~~~~~~i~~~~~~l~~~w~~L~~~~~ 2119 (2174)
..+..|...+..+..+|......... +-..-. ..-.-.|....+.| ..|..|+.-+.
T Consensus 992 ~~i~~f~~~l~~~~r~I~~~s~~l~~~v~~~~~~~~i~~i~v~i~s~i~~l-~~w~~Lk~F~~ 1053 (1201)
T PF12128_consen 992 NDISNFYGVLEDFDRRIKSQSRRLSREVSEDLFFEAISDIEVRIRSSIDEL-EFWKPLKQFSD 1053 (1201)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhccccccceeEEEEEechhhh-ccHHHHHHHHH
Confidence 34556666666666666666544322 222211 11122466667777 56877765443
No 15
>KOG4674|consensus
Probab=98.08 E-value=0.19 Score=70.59 Aligned_cols=80 Identities=13% Similarity=0.241 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhhhhhcc-Chh----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 978 VLMLQELLNKYAQLNEEAGELNMMISNVSIATEHMNL-NDA----DRLTVNDSVSSMQKRYAQLSRTIEDRISTVNNKLQ 1052 (2174)
Q Consensus 978 ~~~l~~~l~k~~~l~~ei~~~~~~v~~l~~~~~~L~~-~~~----~~~~i~~~~~~L~~rw~~L~~~~~~R~~~Le~~l~ 1052 (2174)
-..+-..|-.|..+..-.......+..+...|..+.. ..+ -...+...++.+..+...|.....+-.++++..+.
T Consensus 521 ~~iIse~Lv~F~nI~eLqekN~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~ 600 (1822)
T KOG4674|consen 521 EEIISERLVEFSNINELQEKNVELLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLT 600 (1822)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888777766666677777777777722 111 23345556666666777777666666666665544
Q ss_pred HHHHH
Q psy4474 1053 SVKRL 1057 (2174)
Q Consensus 1053 ~~~~f 1057 (2174)
....|
T Consensus 601 erd~y 605 (1822)
T KOG4674|consen 601 ERDMY 605 (1822)
T ss_pred HHHHH
Confidence 43333
No 16
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.02 E-value=0.33 Score=70.99 Aligned_cols=85 Identities=18% Similarity=0.222 Sum_probs=49.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhHHhhccccccCC-hHHHHHHHHHHHHHH
Q psy4474 914 SPIKDKIDRLEKETKAQSDRIQDALKTLNQLIGHRKEFEVDVENVEAKLKELEVAVEGDVKTNN-VLMLQELLNKYAQLN 992 (2174)
Q Consensus 914 ~~i~~~l~~L~~~~~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~~~~WL~e~e~~l~~~~~~~d-~~~l~~~l~k~~~l~ 992 (2174)
..+...+..+......+..........+..+-.........+..+..-|......+.....+.+ +..+...-..+....
T Consensus 573 ~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 573 KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777766666666555666666666666666666665553212222 233444444444455
Q ss_pred HHHHHh
Q psy4474 993 EEAGEL 998 (2174)
Q Consensus 993 ~ei~~~ 998 (2174)
.++..+
T Consensus 653 ~~~~~~ 658 (1311)
T TIGR00606 653 KQRAML 658 (1311)
T ss_pred HHHHHH
Confidence 444433
No 17
>KOG0994|consensus
Probab=97.88 E-value=0.22 Score=64.49 Aligned_cols=95 Identities=13% Similarity=0.210 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccccCCCcccHhHHHHHHHH
Q psy4474 1145 EQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKIIADIQEYEAILATASDKGDQLSSDGTISDRNEITEQLQS 1224 (2174)
Q Consensus 1145 ~~f~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~el~~~~~~l~~~~~~~~~L~~~~~~~~~~~i~~~~~~ 1224 (2174)
..|.+.+.++...+.++...+........++.++-...+.+..+|.+....+-.+......+....+.. ...+..
T Consensus 1197 gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a-----~~~Les 1271 (1758)
T KOG0994|consen 1197 GAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLA-----GKDLES 1271 (1758)
T ss_pred hhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchh-----hhhHHH
Confidence 468888888888898888888877777788888888888888888887777777666555444333222 245777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4474 1225 RKQQLHNLRKTVEKLRQQNE 1244 (2174)
Q Consensus 1225 l~~~~~~L~~~~~~~~~~~~ 1244 (2174)
|+.....|.....++.+.+.
T Consensus 1272 Lq~~~~~l~~~~keL~e~~~ 1291 (1758)
T KOG0994|consen 1272 LQREFNGLLTTYKELREQLE 1291 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776665544
No 18
>KOG0161|consensus
Probab=97.84 E-value=0.54 Score=67.67 Aligned_cols=51 Identities=29% Similarity=0.406 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4474 1217 EITEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHAR 1267 (2174)
Q Consensus 1217 ~i~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~l~~f~~~~~~~~~wl~~~ 1267 (2174)
.+.+.+.....++..++..+.+++..+......-.....++.++..-+...
T Consensus 1657 e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~ 1707 (1930)
T KOG0161|consen 1657 ELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNEL 1707 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 444455555556666666666665555544443444455555655555553
No 19
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.75 E-value=0.74 Score=66.51 Aligned_cols=133 Identities=12% Similarity=0.210 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHhHHHHHHHHHHhHHhhccccccCChHHHHHHHHHHHHHHHH
Q psy4474 916 IKDKIDRLEKETKAQSDRIQDALKTLNQLIG-HRKEFEVDVENVEAKLKELEVAVEGDVKTNNVLMLQELLNKYAQLNEE 994 (2174)
Q Consensus 916 i~~~l~~L~~~~~~l~~~~~~r~~~L~~~~~-~~~~f~~~~~~~~~WL~e~e~~l~~~~~~~d~~~l~~~l~k~~~l~~e 994 (2174)
.......++..|..+...+......+..... ....|...+..++.|....-. ..|.|+..+..+-++++.+..+
T Consensus 712 ~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~-----~~GvD~~~I~~l~~~i~~L~~~ 786 (1201)
T PF12128_consen 712 LKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELA-----GKGVDPERIQQLKQEIEQLEKE 786 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHH
Confidence 3444456667788887777777776655543 334566677777777765332 3577776666666666666555
Q ss_pred HHH---hhhhHHhHhhhhh-------hhccChh----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 995 AGE---LNMMISNVSIATE-------HMNLNDA----DRLTVNDSVSSMQKRYAQLSRTIEDRISTVNNKLQS 1053 (2174)
Q Consensus 995 i~~---~~~~v~~l~~~~~-------~L~~~~~----~~~~i~~~~~~L~~rw~~L~~~~~~R~~~Le~~l~~ 1053 (2174)
|.. +.+.|..-..--+ .+....| ....+..++..+......+...+..+...++..+..
T Consensus 787 l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~ 859 (1201)
T PF12128_consen 787 LKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKA 859 (1201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 3333332221111 1111111 223455555556666666666666666666655443
No 20
>KOG0994|consensus
Probab=97.61 E-value=0.54 Score=61.23 Aligned_cols=93 Identities=11% Similarity=0.194 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q psy4474 244 YEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESLHQPSEQSKQQLATITTR 323 (2174)
Q Consensus 244 f~~~~~~l~~WL~e~e~~l~~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~~~~l~~r 323 (2174)
|...+..+..-|.++...|... ....+.+...-...+.|...|.+....+-.+...-..+....+.....++.|...
T Consensus 1199 y~s~f~~me~kl~~ir~il~~~---svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~ 1275 (1758)
T KOG0994|consen 1199 YASRFLDMEEKLEEIRAILSAP---SVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQRE 1275 (1758)
T ss_pred hHhHHHHHHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHH
Confidence 7888888888888888888653 3566777777778888888888888877777766666655555556677777777
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4474 324 HGNVLKRAQKFTEAYE 339 (2174)
Q Consensus 324 ~~~L~~~~~~r~~~Le 339 (2174)
+..|.....+...+++
T Consensus 1276 ~~~l~~~~keL~e~~~ 1291 (1758)
T KOG0994|consen 1276 FNGLLTTYKELREQLE 1291 (1758)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777766666555554
No 21
>KOG0161|consensus
Probab=97.34 E-value=2.2 Score=61.82 Aligned_cols=242 Identities=14% Similarity=0.169 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCchHhHHHH
Q psy4474 1452 NINQEINQITLDWTNLQNTLQDIDKHHAKCLSLW-------NDFLSSKNTLEKWIEGFQKKIESEKDIGDCTNLDDLEKY 1524 (2174)
Q Consensus 1452 ~i~~~l~~L~~~W~~L~~~~~~r~~~Le~~~~~~-------~~f~~~~~~l~~WL~~~e~~L~~~~~~~~~~~~~~l~k~ 1524 (2174)
.+..+-..+...|..+...+..-+..|+.-...- ..+..++.+++.+++.....-.. ...++.+.
T Consensus 1566 ~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d--------~~K~lkk~ 1637 (1930)
T KOG0161|consen 1566 RLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANED--------AQKQLKKL 1637 (1930)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHH--------HHHHHHhh
Confidence 4556666777777777766665555444322211 23455566666666655543222 11334433
Q ss_pred HHHHHhhhhhhchhhHHHHHhhhhhhhhhcccCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1525 KALLQEGLHKEADNKKVLIDSFNKGIIGMTELESEEVKDLIQVGVHGLQVELNALLQNIEAEINKVANAAQERKAMQDKI 1604 (2174)
Q Consensus 1525 ~~l~~ei~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~~~~~~~~~f~~~~ 1604 (2174)
+....++.. .++.. ......+...+.....|...+...+.+.+..++.+....+....++
T Consensus 1638 q~~~k~lq~--------~~e~~------------~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~ 1697 (1930)
T KOG0161|consen 1638 QAQLKELQR--------ELEDA------------QRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELEL 1697 (1930)
T ss_pred HHHHHHHHH--------HHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 333333322 11111 1234567777888888999999999999888888887777788888
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHH-HHHHHHHhhchhhhhHHHHHHHHHHhhcccCCCCCchHH---HHHHHHHHHHHHH
Q psy4474 1605 SKLQSWLKQYIDYSGNKQALQSRL-DKVNEIQESFPEISTKLQTLSDHIENSSRKLPSRTNEAM---YRDLANLRYDFEK 1680 (2174)
Q Consensus 1605 ~~l~~wl~~~e~~~~d~~~~~~~l-~k~~~~~~el~~~~~~~~~l~~~~~~l~~~~~~~~~~~i---~~~l~~l~~~w~~ 1680 (2174)
.++..-++..-...+........+ .++..++.+++..........+.+......+.. .++++ +.....+...-..
T Consensus 1698 ~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~-~~~el~~Eq~~~~~le~~k~~ 1776 (1930)
T KOG0161|consen 1698 EELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAK-LAEELRKEQETSQKLERLKKS 1776 (1930)
T ss_pred HHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHH
Confidence 888888888654433333333222 223444455554444444444444333322111 01111 1222223333333
Q ss_pred HHhhHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Q psy4474 1681 CVSSLSDVKQGLESRLVQ-WNEYETSLGKLITWLNDTENVLKN 1722 (2174)
Q Consensus 1681 L~~~~~~r~~~L~~~~~~-~~~f~~~~~~l~~Wl~~~e~~L~~ 1722 (2174)
|.....+.+.+|.++-.. ...+...+..|+.=+.+.|..|..
T Consensus 1777 LE~~~kdLq~rL~e~E~~a~~~~k~~i~~Learir~LE~~l~~ 1819 (1930)
T KOG0161|consen 1777 LERQVKDLQLRLDEAEQAALKGGKKQIAKLEARIRELESELEG 1819 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHhH
Confidence 444444444444443221 122333455555556666666654
No 22
>KOG4674|consensus
Probab=97.31 E-value=2.1 Score=60.83 Aligned_cols=151 Identities=13% Similarity=0.212 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhhhccHHHHHHHHHHHHHHHHHHHHhH
Q psy4474 1223 QSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVPSSSRLHNLRKTVEKLRQQNEKRAAESEKLG 1302 (2174)
Q Consensus 1223 ~~l~~~~~~L~~~~~~~~~~~~~~~~~l~~f~~~~~~~~~wl~~~~~~l~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~ 1302 (2174)
..+..+...|...|..++..++.....++.|....+.-..|.......+.. .+..+.+++......+......+..+.
T Consensus 801 ~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~--~~~~~~~~l~~~~~~~~~le~k~~eL~ 878 (1822)
T KOG4674|consen 801 DKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELES--ELKSLLTSLDSVSTNIAKLEIKLSELE 878 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666667777777776666666776666666655555443322211 222333333333333333323222222
Q ss_pred HHHHHHHHHHHhhhhhhhcchhhhhhccchhhhhhHHHHHHhhhhhchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1303 AELEEIIEALHARETAVKTLPVLLLEVTSVDVELDKQRLELATKEVQPYVQRYETLKKNIAEAIDKFETQANEHEAYKQA 1382 (2174)
Q Consensus 1303 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~w~~L~~~~~~R~~~L~~a~~~~~~f~~~ 1382 (2174)
..++..-. +... +.+. ........+..........+..-+.+|..+......|...
T Consensus 879 k~l~~~~~----~~~~----------l~~~----------~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~ 934 (1822)
T KOG4674|consen 879 KRLKSAKT----QLLN----------LDSK----------SSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEE 934 (1822)
T ss_pred HHHHHhHH----HHhh----------cccc----------chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222111 1000 0000 0001111111223333334444456677777777778777
Q ss_pred HHHHHHHHHHHHHhhhc
Q psy4474 1383 YNEAYDWLRKAKLGAQA 1399 (2174)
Q Consensus 1383 ~~~l~~WL~~~e~~l~~ 1399 (2174)
+.....-|..+...+..
T Consensus 935 ~~s~eqsl~~~ks~lde 951 (1822)
T KOG4674|consen 935 YSSLEQSLESVKSELDE 951 (1822)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777766666554
No 23
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.83 E-value=3.3 Score=54.71 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=39.0
Q ss_pred HHHHHHhhccccccCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4474 1195 ILATASDKGDQLSSDGTISDRNEITEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHA 1266 (2174)
Q Consensus 1195 ~l~~~~~~~~~L~~~~~~~~~~~i~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~l~~f~~~~~~~~~wl~~ 1266 (2174)
.++.+....++|...|..-+.-.|...+..++.++......+..+ .+......+......++.+++-+..
T Consensus 231 ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lek 300 (569)
T PRK04778 231 QLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILER 300 (569)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556555544443456677778887777655555544 2334444455555566666555543
No 24
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.63 E-value=7.6 Score=56.35 Aligned_cols=63 Identities=6% Similarity=0.046 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhhhhhccChhchhhHHHHHHHHHHHHHHHHHHH
Q psy4474 978 VLMLQELLNKYAQLNEEAGELNMMISNVSIATEHMNLNDADRLTVNDSVSSMQKRYAQLSRTI 1040 (2174)
Q Consensus 978 ~~~l~~~l~k~~~l~~ei~~~~~~v~~l~~~~~~L~~~~~~~~~i~~~~~~L~~rw~~L~~~~ 1040 (2174)
...+..++.....-..-+..+...+..+......|...+.+...+...+.....+|..+...+
T Consensus 896 ~~~~~~~~~~~~~a~~y~~~~~~~L~qLE~~l~~L~~Dp~~~e~lr~e~~~~~~~~~~~~~~~ 958 (1486)
T PRK04863 896 VEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQA 958 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666655555556667777777777666776665566667777777777777665543
No 25
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.96 E-value=9 Score=50.38 Aligned_cols=49 Identities=24% Similarity=0.424 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4474 1218 ITEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHA 1266 (2174)
Q Consensus 1218 i~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~l~~f~~~~~~~~~wl~~ 1266 (2174)
+...+..+......+...+..++..-......+..|...+..+...+..
T Consensus 384 ~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek 432 (560)
T PF06160_consen 384 IEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEK 432 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666667777766666667788888888888888775
No 26
>PRK03918 chromosome segregation protein; Provisional
Probab=95.84 E-value=16 Score=52.18 Aligned_cols=18 Identities=6% Similarity=-0.040 Sum_probs=9.4
Q ss_pred ccCChHHHHHHHHHHHHH
Q psy4474 974 KTNNVLMLQELLNKYAQL 991 (2174)
Q Consensus 974 ~~~d~~~l~~~l~k~~~l 991 (2174)
.+-|+........-+..+
T Consensus 823 ~~lD~~~~~~l~~~l~~~ 840 (880)
T PRK03918 823 PFLDEERRRKLVDIMERY 840 (880)
T ss_pred cccCHHHHHHHHHHHHHH
Confidence 355666665555444333
No 27
>PRK02224 chromosome segregation protein; Provisional
Probab=95.76 E-value=16 Score=51.86 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4474 632 REAMTVLRDSWDRLNRDLKSTSTQLKSYIARWNELDDLYNRFNM 675 (2174)
Q Consensus 632 ~~~~~~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~ 675 (2174)
...+..+...++.+...+..+...++........+...+..+..
T Consensus 508 ~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~ 551 (880)
T PRK02224 508 EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEA 551 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666655555555554433
No 28
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.30 E-value=25 Score=46.26 Aligned_cols=97 Identities=20% Similarity=0.218 Sum_probs=47.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy4474 494 LQEVISHNSDMETLNDKCEALMELAAHSPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWLHKAH 573 (2174)
Q Consensus 494 ~~ei~~~~~~l~~l~~~~~~L~~~~~~~~i~~~~~~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~~~e 573 (2174)
...+...+..+..+...-..|.... ..-+..+..+...|..+...+-.....+ ...+..+..-|...+
T Consensus 107 ~~~l~~~e~~i~~i~~~l~~L~~~e--~~nr~~i~~l~~~y~~lrk~ll~~~~~~----------G~a~~~Le~~L~~ie 174 (560)
T PF06160_consen 107 EEQLDEIEEDIKEILDELDELLESE--EKNREEIEELKEKYRELRKELLAHSFSY----------GPAIEELEKQLENIE 174 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhh----------chhHHHHHHHHHHHH
Confidence 3333334444444444444443321 1234456667777777766655544433 333444444444444
Q ss_pred Hhhhhh---cCCCCHHHHHHHHHHHHHHHHhc
Q psy4474 574 ATVQEC---AGNGSKNVLKERLDTVNMVAERI 602 (2174)
Q Consensus 574 ~~l~~~---~~~~d~~~~~~~l~~~~~~~~el 602 (2174)
..+... ...+|+..+...+..++.-...+
T Consensus 175 ~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l 206 (560)
T PF06160_consen 175 EEFSEFEELTENGDYLEAREILEKLKEETDEL 206 (560)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 333332 23567777777776665544433
No 29
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.20 E-value=49 Score=49.17 Aligned_cols=16 Identities=13% Similarity=0.275 Sum_probs=6.2
Q ss_pred HHHHHHHHhHHHHHHH
Q psy4474 1455 QEINQITLDWTNLQNT 1470 (2174)
Q Consensus 1455 ~~l~~L~~~W~~L~~~ 1470 (2174)
..+..+...+..+...
T Consensus 709 ~~~~~~~~~~~~l~~~ 724 (1164)
T TIGR02169 709 QELSDASRKIGEIEKE 724 (1164)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333334333333
No 30
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=93.97 E-value=54 Score=48.77 Aligned_cols=10 Identities=20% Similarity=-0.024 Sum_probs=4.7
Q ss_pred cccccccccH
Q psy4474 907 CFSAEEGSPI 916 (2174)
Q Consensus 907 ~~~~~~~~~i 916 (2174)
.++|.+.+.|
T Consensus 30 G~NGsGKS~i 39 (1164)
T TIGR02169 30 GPNGSGKSNI 39 (1164)
T ss_pred CCCCCCHHHH
Confidence 3345555544
No 31
>PF13514 AAA_27: AAA domain
Probab=93.89 E-value=49 Score=48.09 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhcC
Q psy4474 270 TTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESLHQ 308 (2174)
Q Consensus 270 ~d~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~ 308 (2174)
.....+.....+...+...+......+..+......+.-
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~ 277 (1111)
T PF13514_consen 239 DGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPV 277 (1111)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 446677777788888888888888888888877666543
No 32
>PRK02224 chromosome segregation protein; Provisional
Probab=93.88 E-value=45 Score=47.53 Aligned_cols=46 Identities=9% Similarity=0.079 Sum_probs=27.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1454 NQEINQITLDWTNLQNTLQDIDKHHAKCLSLWNDFLSSKNTLEKWI 1499 (2174)
Q Consensus 1454 ~~~l~~L~~~W~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL 1499 (2174)
+..+..+..+.+.+......+...++.....+..+...+..+..=+
T Consensus 508 ~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~ 553 (880)
T PRK02224 508 EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEA 553 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666655555553333
No 33
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.66 E-value=34 Score=45.39 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=37.8
Q ss_pred hhccChhchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4474 1011 HMNLNDADRLTVNDSVSSMQKRYAQLSRTIE---DRISTVNNKLQSVKRLQHKVEEAKALLQKAESQL 1075 (2174)
Q Consensus 1011 ~L~~~~~~~~~i~~~~~~L~~rw~~L~~~~~---~R~~~Le~~l~~~~~f~~~~~~~~~wl~~~e~~l 1075 (2174)
.|..++.+-..|...+..+..+++.|..... +-...++..+.....|......+..-+.+.+..+
T Consensus 463 ~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~~f~~Ae~lF 530 (569)
T PRK04778 463 ELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQYANRYRSDNEEVAEALNEAERLF 530 (569)
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 3433455555666667777777766665533 3344555556656666666666666666666433
No 34
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.64 E-value=56 Score=47.91 Aligned_cols=60 Identities=13% Similarity=0.235 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4474 1449 GKENINQEINQITLDWTNLQNTLQDIDKHHAKCLSLWNDFLSSKNTLEKWIEGFQKKIES 1508 (2174)
Q Consensus 1449 ~~~~i~~~l~~L~~~W~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~L~~ 1508 (2174)
-.+.|+..+..+......+...+..-+..+..+...+..+...+.....=+.+.+..|..
T Consensus 986 ~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~ 1045 (1486)
T PRK04863 986 LNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQD 1045 (1486)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888899999999999888888888888887788888888888888888888887
No 35
>PF13514 AAA_27: AAA domain
Probab=93.52 E-value=56 Score=47.54 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccc
Q psy4474 1174 TVQEKIDKYDKIIADIQEYEAILATASDKGDQLSS 1208 (2174)
Q Consensus 1174 ~~~~~l~~~~~l~~el~~~~~~l~~~~~~~~~L~~ 1208 (2174)
.......+...+..++......+..+......+..
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~ 277 (1111)
T PF13514_consen 243 RLEQLEEELAEAQAQLERLQEELAQLEEELDALPV 277 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34555555666677777777777777766655543
No 36
>PRK03918 chromosome segregation protein; Provisional
Probab=93.13 E-value=58 Score=46.51 Aligned_cols=18 Identities=0% Similarity=-0.165 Sum_probs=11.0
Q ss_pred HHHHhhHHHHHHhHhhhH
Q psy4474 35 LLHVMSKEVINRWQGLVY 52 (2174)
Q Consensus 35 ~L~~~~~~r~~~L~~~~~ 52 (2174)
.+.....+|...+..+.+
T Consensus 139 ~~~~~~~~r~~~~~~~~~ 156 (880)
T PRK03918 139 AILESDESREKVVRQILG 156 (880)
T ss_pred HHhcCcHHHHHHHHHHhC
Confidence 344445677777777753
No 37
>KOG4240|consensus
Probab=93.08 E-value=46 Score=45.25 Aligned_cols=169 Identities=10% Similarity=0.076 Sum_probs=117.1
Q ss_pred HHHHHhhcChhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCc
Q psy4474 1438 KNNVLESTGPIGKENINQEINQITLDWTNLQNTLQDIDKHHAKCLSLWNDFLSSKNTLEKWIEGFQKKIESEKDIGDCTN 1517 (2174)
Q Consensus 1438 ~~~L~~~~~~~~~~~i~~~l~~L~~~W~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL~~~e~~L~~~~~~~~~~~ 1517 (2174)
+..++......-.+.|+.-+..+..+-..+.-....+..++..|.. +..+..+..++..|+.+-..+|......+++..
T Consensus 231 ~~r~a~e~~~~mve~vQ~~le~l~~~~q~~El~~d~~s~rl~~a~~-l~~l~~~k~qv~~~~rng~smLt~~~~~~s~~~ 309 (1025)
T KOG4240|consen 231 GGRLATESDRDMVEAVQGLLESLEEEVQRLELPADVRSTRLEQASQ-LAKLLEDKNQVLALIRNGLSMLTQLRVLASDLS 309 (1025)
T ss_pred HHHhccccchHHHHHHHHHHHhHHHHHHhhcchhhchhhHHHHHHH-HHHHHHHHHHHHHHHhcchhhhhhhccCCCcCC
Confidence 4444444444457789999999999999999999999999999987 889999999999999999988888443333322
Q ss_pred h-HhH-HHHHHHHHhhhhhhchhhHHHHHhhhhhhhhhcccCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1518 L-DDL-EKYKALLQEGLHKEADNKKVLIDSFNKGIIGMTELESEEVKDLIQVGVHGLQVELNALLQNIEAEINKVANAAQ 1595 (2174)
Q Consensus 1518 ~-~~l-~k~~~l~~ei~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~~~~~ 1595 (2174)
+ ..+ ..|..+.+-+... .+...+.... .+..+. ...+.....+-.++..+..+|..+...++.|...+..+..
T Consensus 310 et~~Lq~~~~~f~d~~e~k---~~~~q~~~~~-~a~~~~-~~~h~~~~e~~~~le~~~t~~qql~~~~e~r~~~vaa~~~ 384 (1025)
T KOG4240|consen 310 ETSQLQREHRQFQDAQEVK---TLLSQLQVQQ-KAFDLL-QNKHQNRDESLEKLETLQTKWQQLMTAMEDRLKLVAAAVA 384 (1025)
T ss_pred ccHHHHhhHhhhhhHHHHH---HHHHHHHHHH-HHHHHH-hchhhhHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2 333 3455555433220 0111111111 222222 2456778889999999999999999999999998877554
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy4474 1596 ERKAMQDKISKLQSWLKQYID 1616 (2174)
Q Consensus 1596 ~~~~f~~~~~~l~~wl~~~e~ 1616 (2174)
|......+..-|.+.+.
T Consensus 385 ----~~~t~e~v~~iLe~le~ 401 (1025)
T KOG4240|consen 385 ----FYKTSEQVEPILEDLES 401 (1025)
T ss_pred ----HhcCHHHHHHHHHhccc
Confidence 66666666666666543
No 38
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.05 E-value=86 Score=45.87 Aligned_cols=57 Identities=5% Similarity=0.098 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4474 1452 NINQEINQITLDWTNLQNTLQDIDKHHAKCLS-LWNDFLSSKNTLEKWIEGFQKKIES 1508 (2174)
Q Consensus 1452 ~i~~~l~~L~~~W~~L~~~~~~r~~~Le~~~~-~~~~f~~~~~~l~~WL~~~e~~L~~ 1508 (2174)
.+..+...|....+.|..........+...-. ....|...+..+..=+..+=..|..
T Consensus 974 ~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L~~ 1031 (1163)
T COG1196 974 EVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFG 1031 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444444444444444444433333332221 1335666666666666666555543
No 39
>KOG4240|consensus
Probab=90.58 E-value=83 Score=42.99 Aligned_cols=157 Identities=10% Similarity=0.135 Sum_probs=106.2
Q ss_pred HHhhhhhchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccchHHHHHHHHHHHh
Q psy4474 1342 ELATKEVQPYVQRYETLKKNIAEAIDKFETQANEHEAYKQAYNEAYDWLRKAKLGAQANADCHGEQQTTKDKADKIKQIT 1421 (2174)
Q Consensus 1342 ~~~~~~l~~l~~~w~~L~~~~~~R~~~L~~a~~~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~~~~~~ 1421 (2174)
+.++.-+..+...-..+.-....+..++..+ .....+....+.+..|+..-...|......+++..........|..|.
T Consensus 244 e~vQ~~le~l~~~~q~~El~~d~~s~rl~~a-~~l~~l~~~k~qv~~~~rng~smLt~~~~~~s~~~et~~Lq~~~~~f~ 322 (1025)
T KOG4240|consen 244 EAVQGLLESLEEEVQRLELPADVRSTRLEQA-SQLAKLLEDKNQVLALIRNGLSMLTQLRVLASDLSETSQLQREHRQFQ 322 (1025)
T ss_pred HHHHHHHHhHHHHHHhhcchhhchhhHHHHH-HHHHHHHHHHHHHHHHHhcchhhhhhhccCCCcCCccHHHHhhHhhhh
Confidence 3444444444444444444555566666666 566789999999999999999888886666777777777777777777
Q ss_pred hcchh--hhhhHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1422 KSLPE--GQKLIDKTVALKNNVLESTGPIGKENINQEINQITLDWTNLQNTLQDIDKHHAKCLSLWNDFLSSKNTLEKWI 1499 (2174)
Q Consensus 1422 ~el~~--~~~~v~~l~~~~~~L~~~~~~~~~~~i~~~l~~L~~~W~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~WL 1499 (2174)
.-... +...+.. ...+..+....++ ....+-.++..++.+|..+...+..|-..+..+. .|+....++..-|
T Consensus 323 d~~e~k~~~~q~~~-~~~a~~~~~~~h~-~~~e~~~~le~~~t~~qql~~~~e~r~~~vaa~~----~~~~t~e~v~~iL 396 (1025)
T KOG4240|consen 323 DAQEVKTLLSQLQV-QQKAFDLLQNKHQ-NRDESLEKLETLQTKWQQLMTAMEDRLKLVAAAV----AFYKTSEQVEPIL 396 (1025)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHhchhh-hHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHH----HHhcCHHHHHHHH
Confidence 65544 2222222 2233333444443 5778899999999999999999999999988865 4666666666666
Q ss_pred HHHHHH
Q psy4474 1500 EGFQKK 1505 (2174)
Q Consensus 1500 ~~~e~~ 1505 (2174)
.+.+..
T Consensus 397 e~le~e 402 (1025)
T KOG4240|consen 397 EDLESE 402 (1025)
T ss_pred Hhcccc
Confidence 655443
No 40
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=90.54 E-value=76 Score=42.50 Aligned_cols=120 Identities=10% Similarity=0.122 Sum_probs=74.3
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc---C-CCCc-HHH
Q psy4474 412 GPIGKENINQEINQITLDWTNLQNTLQVIDKHHAKCLSIWNDFLSSKNTLEKWIEGFQKKIEAEKDI---G-DCTN-LDD 486 (2174)
Q Consensus 412 ~~~~~~~i~~~~~~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~~~~~~l~~~~~~---~-~~~~-~~~ 486 (2174)
-|...+.+..+...|...|..|...+..-+..|-+..-. .-|.....++..-++.++..+...... + .... ...
T Consensus 233 fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~-~vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l 311 (683)
T PF08580_consen 233 FPSACEELEDRYERLEKKWKKLEKEAESLKKELIEDRWN-IVFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKL 311 (683)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHH
Confidence 355667899999999999999999999888888776533 359999999999999998887542111 1 1111 122
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcchHHHH-HHHHHHHHHH
Q psy4474 487 LEKYKALLQEVISHNSDMETLNDKCEALMELAAHSPIREETL-RLQALYAALV 538 (2174)
Q Consensus 487 l~~~k~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~~i~~~~~-~l~~~w~~L~ 538 (2174)
-.++......+..+-+-|.. +....|+.. .|.+++. .|..+|..|.
T Consensus 312 ~~~i~s~~~k~~~~~~~I~k--a~~~sIi~~----gv~~r~n~~L~~rW~~L~ 358 (683)
T PF08580_consen 312 SKQIESKEKKKSHYFPAIYK--ARVLSIIDK----GVADRLNADLAQRWLELK 358 (683)
T ss_pred HHHHHHHHHHHhccHHHHHH--HHHHHhhhh----hHHHHhhHHHHHHHHHHH
Confidence 22333333333333222211 112223332 3666776 8889999886
No 41
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=90.45 E-value=43 Score=39.45 Aligned_cols=229 Identities=13% Similarity=0.199 Sum_probs=122.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCH-HHHHHHHHHHHHHHhhchhhh
Q psy4474 1564 LIQVGVHGLQVELNALLQNIEAEINKVANAAQERKAMQDKISKLQSWLKQYIDYSGNK-QALQSRLDKVNEIQESFPEIS 1642 (2174)
Q Consensus 1564 ~i~~~~~~l~~rw~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~wl~~~e~~~~d~-~~~~~~l~k~~~~~~el~~~~ 1642 (2174)
.|...+..+...|..........+..+...-.....+..+++.+..-.+.+...+... ......+.+-+.+...+....
T Consensus 21 ~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~ 100 (264)
T PF06008_consen 21 KLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQ 100 (264)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666655555555555544445556666666666666554443322 233444455555566666656
Q ss_pred hHHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4474 1643 TKLQTLSDHIENSSRKLPSRTNEAMYRDLANLRYDFEKCVSSLSDVKQGLESRLVQWNEYETSLGKLITWLNDTENVLKN 1722 (2174)
Q Consensus 1643 ~~~~~l~~~~~~l~~~~~~~~~~~i~~~l~~l~~~w~~L~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~~~e~~L~~ 1722 (2174)
..+..+......+........+..+...+.+.......+...- -......+-.++..+..-+..+..|+...-.....
T Consensus 101 ~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~ 178 (264)
T PF06008_consen 101 DNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRD--FTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENES 178 (264)
T ss_pred HHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHH
Confidence 6666665555555442223444667777777777777765552 22222223334455555566666665433322211
Q ss_pred ccCCCChhhHhhHHHHHhhhccccchHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHhhHHhHHHHHH
Q psy4474 1723 FTLQPTLNEKKQQRELKGKLSSWCGYEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQ 1802 (2174)
Q Consensus 1723 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~wl~~~e~~l~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~ 1802 (2174)
.. .........|...+.++..|+.+..........+ ....+.-+..+..-..+|......+..
T Consensus 179 -----------l~---~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~l---n~~n~~~l~~~~~k~~~l~~~~~~~~~ 241 (264)
T PF06008_consen 179 -----------LA---EAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDL---NRANQKNLEDLEKKKQELSEQQNEVSE 241 (264)
T ss_pred -----------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 1122233456777777777777766655432211 122333455555556667777777777
Q ss_pred HHHHHhhhc
Q psy4474 1803 LKDKIESLH 1811 (2174)
Q Consensus 1803 l~~~~~~l~ 1811 (2174)
.+..|..+.
T Consensus 242 ~L~~a~~~L 250 (264)
T PF06008_consen 242 TLKEAEDLL 250 (264)
T ss_pred HHHHHHHHH
Confidence 777776663
No 42
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=90.07 E-value=46 Score=39.21 Aligned_cols=84 Identities=19% Similarity=0.316 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----ccCCChHHHHHHHHHHHHH
Q psy4474 1021 TVNDSVSSMQKRYAQLSRTIEDRISTVNNKLQSVKRLQHKVEEAKALLQKAESQLAR----PVSTQAEDISEALTVYQKL 1096 (2174)
Q Consensus 1021 ~i~~~~~~L~~rw~~L~~~~~~R~~~Le~~l~~~~~f~~~~~~~~~wl~~~e~~l~~----~~~~~~~~~~~~l~~~~~l 1096 (2174)
.+...+..|..+-..............+..+...+.....+..+..-|.+.-..+.. ....++..+...+...+.+
T Consensus 56 ~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~m 135 (264)
T PF06008_consen 56 SLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRM 135 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555555555555555444432 2345669999999999999
Q ss_pred HHHHHhhc
Q psy4474 1097 LDEINSWK 1104 (2174)
Q Consensus 1097 ~~el~~~~ 1104 (2174)
+.+|..+.
T Consensus 136 L~emr~r~ 143 (264)
T PF06008_consen 136 LEEMRKRD 143 (264)
T ss_pred HHHHHhcc
Confidence 99998873
No 43
>KOG0996|consensus
Probab=88.78 E-value=1.1e+02 Score=41.95 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy4474 1485 WNDFLSSKNTLEKWIEGFQKKIES 1508 (2174)
Q Consensus 1485 ~~~f~~~~~~l~~WL~~~e~~L~~ 1508 (2174)
+..|...+.-+..-|.++-.++..
T Consensus 1137 ldEFm~gf~~Is~kLkemYQmIT~ 1160 (1293)
T KOG0996|consen 1137 LDEFMAGFNIISMKLKEMYQMITL 1160 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567888888888888888877766
No 44
>KOG0971|consensus
Probab=88.30 E-value=1e+02 Score=40.77 Aligned_cols=95 Identities=21% Similarity=0.318 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhhhHHhHhhhhhhh-ccChhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 988 YAQLNEEAGELNMMISNVSIATEHM-NLNDADRLTVNDSVSSMQKRYAQLSRTIEDRISTVNNKLQSVKRLQHKVEEAKA 1066 (2174)
Q Consensus 988 ~~~l~~ei~~~~~~v~~l~~~~~~L-~~~~~~~~~i~~~~~~L~~rw~~L~~~~~~R~~~Le~~l~~~~~f~~~~~~~~~ 1066 (2174)
.+.|+++|+..+ .+...-..| ..++.-..++++.++.++-.-..+...+..-...+-+.-.....|++.+..+..
T Consensus 464 VklLeetv~dlE----alee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqd 539 (1243)
T KOG0971|consen 464 VKLLEETVGDLE----ALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQD 539 (1243)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344444443322 333334444 334444446667777666665666655555555554444555667777777777
Q ss_pred HHHHHHHhhc-------cccCCChHHH
Q psy4474 1067 LLQKAESQLA-------RPVSTQAEDI 1086 (2174)
Q Consensus 1067 wl~~~e~~l~-------~~~~~~~~~~ 1086 (2174)
-+.+.-.+.. .|.+++++.+
T Consensus 540 qlqe~~dq~~Sseees~q~~s~~~et~ 566 (1243)
T KOG0971|consen 540 QLQELTDQQESSEEESQQPPSVDPETF 566 (1243)
T ss_pred HHHHHHhhhhhhHHHhcCCCCCchhhh
Confidence 6666544322 2555555444
No 45
>KOG0933|consensus
Probab=87.46 E-value=1.2e+02 Score=40.82 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=30.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhh
Q psy4474 1770 MELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESL 1810 (2174)
Q Consensus 1770 ~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~l~~~~~~l 1810 (2174)
..++.++.....+.++...+..++......++.+.+.-..+
T Consensus 465 ~~l~~~~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~~ 505 (1174)
T KOG0933|consen 465 QSLGYKIGQEEALKQRRAKLHEDIGRLKDELDRLLARLANY 505 (1174)
T ss_pred HhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 46777777777777777777777777777777777766555
No 46
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=83.89 E-value=1.4e+02 Score=38.37 Aligned_cols=31 Identities=10% Similarity=0.026 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 319 TITTRHGNVLKRAQKFTEAYEGIVSIHQAYT 349 (2174)
Q Consensus 319 ~l~~r~~~L~~~~~~r~~~Le~~~~~~~~f~ 349 (2174)
++..+|..+.....+-...|+++......|.
T Consensus 259 ~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~ 289 (557)
T COG0497 259 EYDGKLSELAELLEEALYELEEASEELRAYL 289 (557)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666665555555544444433
No 47
>KOG4673|consensus
Probab=82.99 E-value=1.5e+02 Score=37.91 Aligned_cols=75 Identities=15% Similarity=0.222 Sum_probs=55.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhccccccCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1180 DKYDKIIADIQEYEAILATASDKGDQLSSDGTISDRNEITEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGA 1255 (2174)
Q Consensus 1180 ~~~~~l~~el~~~~~~l~~~~~~~~~L~~~~~~~~~~~i~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~l~~f~~ 1255 (2174)
.+-+.|..+|..++.++++...+|+.|+...+... -.+..+|..|+..+..-...|+.....+-+++..-+.+.+
T Consensus 605 rrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TT-rPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr 679 (961)
T KOG4673|consen 605 RREDMFRGEIEDLQRRLQAAERRCEELIQQVPETT-RPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLR 679 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Confidence 44566778899999999999999999887765443 3455678999998888888898877777776664444433
No 48
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=81.73 E-value=2e+02 Score=38.63 Aligned_cols=57 Identities=7% Similarity=0.071 Sum_probs=37.9
Q ss_pred HHhhhhhchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy4474 1342 ELATKEVQPYVQRYETLKKNIAEAIDKFETQANEHEAYKQAYNEAYDWLRKAKLGAQA 1399 (2174)
Q Consensus 1342 ~~~~~~l~~l~~~w~~L~~~~~~R~~~L~~a~~~~~~f~~~~~~l~~WL~~~e~~l~~ 1399 (2174)
+.+..+...|..+|..|...+..=+..|-+-... .-|.....++..-++..+..+..
T Consensus 238 e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~-~vFr~l~~q~~~m~esver~~~k 294 (683)
T PF08580_consen 238 EELEDRYERLEKKWKKLEKEAESLKKELIEDRWN-IVFRNLGRQAQKMCESVERSLSK 294 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667788998888888877777665332 24666666666666666666544
No 49
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=81.02 E-value=2.2e+02 Score=38.65 Aligned_cols=27 Identities=4% Similarity=0.318 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1023 NDSVSSMQKRYAQLSRTIEDRISTVNN 1049 (2174)
Q Consensus 1023 ~~~~~~L~~rw~~L~~~~~~R~~~Le~ 1049 (2174)
...+..+......|...+.++...|..
T Consensus 471 ~~e~~~lk~~~~~LQ~eLsEk~~~l~~ 497 (775)
T PF10174_consen 471 QKELKELKAKLESLQKELSEKELQLED 497 (775)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 334444444444444444444444443
No 50
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=79.79 E-value=1.7e+02 Score=36.64 Aligned_cols=56 Identities=16% Similarity=0.294 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHhHHHH
Q psy4474 1410 TKDKADKIKQITKSLPEGQKLIDKTVALKNNVLESTGPIGKENINQEINQITLDWTNL 1467 (2174)
Q Consensus 1410 v~~~l~~~~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~~i~~~l~~L~~~W~~L 1467 (2174)
-+...+++..++.|+......|..+...+..-.. .......+...+..|....+.|
T Consensus 89 ~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~--e~~~~~~l~~~~~~L~~~L~~l 144 (388)
T PF04912_consen 89 KESPEQKLQRLRREVEELKEELEKRKADSKESDE--EKISPEELAQQLEELSKQLDSL 144 (388)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhccccccc--ccCChhhHHHHHHHHHHHHHHh
Confidence 3456678888888888888888776543332211 1112334566666666666666
No 51
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=77.61 E-value=2e+02 Score=36.11 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccccCCCcccHhHHHHHHHHHHHHHHHH
Q psy4474 1174 TVQEKIDKYDKIIADIQEYEAILATASDKGDQLSSDGTISDRNEITEQLQSRKQQLHNL 1232 (2174)
Q Consensus 1174 ~~~~~l~~~~~l~~el~~~~~~l~~~~~~~~~L~~~~~~~~~~~i~~~~~~l~~~~~~L 1232 (2174)
.-+....++..|+-|+......+.........-. ........+...+..|++.+..|
T Consensus 88 e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~--~e~~~~~~l~~~~~~L~~~L~~l 144 (388)
T PF04912_consen 88 EKESPEQKLQRLRREVEELKEELEKRKADSKESD--EEKISPEELAQQLEELSKQLDSL 144 (388)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccc--cccCChhhHHHHHHHHHHHHHHh
Confidence 3455666777777777777777776654443322 11222344556677777777666
No 52
>KOG4673|consensus
Probab=77.00 E-value=2.3e+02 Score=36.41 Aligned_cols=118 Identities=14% Similarity=0.230 Sum_probs=64.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhch
Q psy4474 1562 KDLIQVGVHGLQVELNALLQNIEAEINKVA--NAAQERKAMQDKISKLQSWLKQYIDYSGNKQALQSRLDKVNEIQESFP 1639 (2174)
Q Consensus 1562 ~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~--~~~~~~~~f~~~~~~l~~wl~~~e~~~~d~~~~~~~l~k~~~~~~el~ 1639 (2174)
.+.+..+...+..-.+........+ .+|. .+......+...+.+|..-|...+... ..+-+-|..++.
T Consensus 546 ~~~le~~~~a~qat~d~a~~Dlqk~-nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~a---------arrEd~~R~Ei~ 615 (961)
T KOG4673|consen 546 AAALEAQALAEQATNDEARSDLQKE-NRLKQDEARERESMLVQQVEDLRQTLSKKEQQA---------ARREDMFRGEIE 615 (961)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHH-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
Confidence 3445555555555555544422111 1222 333444556666666666665554322 234456778888
Q ss_pred hhhhHHHHHHHHHHhhcccCCCCCc------hHHHHHHHHHHHHHHHHHhhHHHHH
Q psy4474 1640 EISTKLQTLSDHIENSSRKLPSRTN------EAMYRDLANLRYDFEKCVSSLSDVK 1689 (2174)
Q Consensus 1640 ~~~~~~~~l~~~~~~l~~~~~~~~~------~~i~~~l~~l~~~w~~L~~~~~~r~ 1689 (2174)
....++......++.+.+.++.+.. +.++..+..-...|+.+...+.+|.
T Consensus 616 ~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL 671 (961)
T KOG4673|consen 616 DLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERL 671 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Confidence 8888888888889888887665433 2233444444445555444444443
No 53
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=76.21 E-value=3e+02 Score=37.47 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1026 VSSMQKRYAQLSRTIEDRISTVNN 1049 (2174)
Q Consensus 1026 ~~~L~~rw~~L~~~~~~R~~~Le~ 1049 (2174)
...+..+++.+.-.+..+...+..
T Consensus 282 ~~~mK~k~d~~~~eL~rk~~E~~~ 305 (775)
T PF10174_consen 282 SLAMKSKMDRLKLELSRKKSELEA 305 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666666544433
No 54
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=75.81 E-value=2.5e+02 Score=36.31 Aligned_cols=92 Identities=10% Similarity=0.080 Sum_probs=66.7
Q ss_pred CCCCccchHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy4474 1402 DCHGEQQTTKDKADKIKQITKSLPEGQKLIDKTVALKNNVLESTGPIGKENINQEINQITLDWTNLQNTLQDIDKHHAKC 1481 (2174)
Q Consensus 1402 ~~~~d~~~v~~~l~~~~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~~i~~~l~~L~~~W~~L~~~~~~r~~~Le~~ 1481 (2174)
+.-.+|+.+...++.+...+..+.. .+++-|...+..+.+..++.....+...+..++..|+.....+-.+-..+.+.
T Consensus 198 ~~~~~P~~~~~~~e~~~~~Q~~l~~--~r~~~L~~l~~l~Pp~~t~~~v~eW~~~l~~l~~~~d~~~~~~~~~lr~~~E~ 275 (473)
T PF14643_consen 198 EEFQNPPERKQLLEQMRKEQVDLHE--KRLELLQSLCDLLPPNLTKEKVEEWYASLNALNEQIDEYHQQCMEKLRALYEK 275 (473)
T ss_pred cccCCChHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677788888888888887763 45555666666555666666678899999999999999999998888877776
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4474 1482 LSLWNDFLSSKNTLEK 1497 (2174)
Q Consensus 1482 ~~~~~~f~~~~~~l~~ 1497 (2174)
. ++.+...+..+..
T Consensus 276 ~--~~ec~~~ve~~k~ 289 (473)
T PF14643_consen 276 I--CQECLALVEKLKQ 289 (473)
T ss_pred H--HHHHHHHHHHHHH
Confidence 5 4556555555443
No 55
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=73.75 E-value=1.9e+02 Score=34.04 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHhhhhh
Q psy4474 1953 IKEEQKNIETQYLQWNSFRETLAQMTAWLDSVEKNIKQE 1991 (2174)
Q Consensus 1953 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l 1991 (2174)
+...++.+..+...-..|+..+..+..........-.+|
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL 200 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL 200 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH
Confidence 445555555555555566666666665555555544433
No 56
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=73.35 E-value=2.8e+02 Score=35.82 Aligned_cols=30 Identities=7% Similarity=0.038 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 918 DKIDRLEKETKAQSDRIQDALKTLNQLIGH 947 (2174)
Q Consensus 918 ~~l~~L~~~~~~l~~~~~~r~~~L~~~~~~ 947 (2174)
..+...-..|..+...+..+..+-++....
T Consensus 157 ~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~ 186 (557)
T COG0497 157 EAYQEAYQAWKQARRELEDLQEKERERAQR 186 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777887777777766655544433
No 57
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=67.78 E-value=1.8e+02 Score=31.40 Aligned_cols=63 Identities=13% Similarity=0.187 Sum_probs=44.7
Q ss_pred cccccHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhhcCCChHHHHHHHHHhhhHHHHHH
Q psy4474 1771 ELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESLHQPSEQSKQQLATITTRHGNVLK 1833 (2174)
Q Consensus 1771 ~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~i~~~l~~l~~~~~~l~~ 1833 (2174)
++...+..++..+.+.+.+..++...+..+..+...+..|...+..+...-..+...|..+..
T Consensus 47 ~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqe 109 (193)
T PF14662_consen 47 DLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQE 109 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445556667778888888888888888888888888876666666666666666666554
No 58
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=67.50 E-value=4.5e+02 Score=35.77 Aligned_cols=40 Identities=8% Similarity=-0.008 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1354 RYETLKKNIAEAIDKFETQANEHEAYKQAYNEAYDWLRKA 1393 (2174)
Q Consensus 1354 ~w~~L~~~~~~R~~~L~~a~~~~~~f~~~~~~l~~WL~~~ 1393 (2174)
++..+...+..|...|-..+.....=...+..+..|+...
T Consensus 317 ~~~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~l~~~l~~~ 356 (650)
T TIGR03185 317 QNQLTQEELEERDKELLESLPKLALPAEHVKEIAAELAEI 356 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhh
Confidence 4444555555555555444311111113356778888654
No 59
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=65.28 E-value=6.9e+02 Score=37.13 Aligned_cols=14 Identities=7% Similarity=0.121 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q psy4474 1025 SVSSMQKRYAQLSR 1038 (2174)
Q Consensus 1025 ~~~~L~~rw~~L~~ 1038 (2174)
+.+.|......|..
T Consensus 1001 q~~dL~~~~~~L~~ 1014 (1179)
T TIGR02168 1001 RYDFLTAQKEDLTE 1014 (1179)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 60
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=64.38 E-value=6.9e+02 Score=36.79 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHh
Q psy4474 277 AQLQVYRTIYQDATSHQQDLLQLKDKIESL 306 (2174)
Q Consensus 277 ~~l~~~~~l~~el~~~~~~v~~l~~~~~~L 306 (2174)
....+......+|......+..+......+
T Consensus 257 ~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~ 286 (1163)
T COG1196 257 ELQEELEEAEKEIEELKSELEELREELEEL 286 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555554444
No 61
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=59.94 E-value=3.8e+02 Score=32.29 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=33.0
Q ss_pred cCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4474 411 TGPIGKENINQEINQITLDWTNLQNTLQVIDKHHAKCLSIWNDFLSSKNTLEKWIEGFQKKIE 473 (2174)
Q Consensus 411 ~~~~~~~~i~~~~~~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~~~~~~l~ 473 (2174)
++|.....++.++......-......+.+....+................+..=|.+.+..+.
T Consensus 201 ~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 201 CDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555544444455555555555555555443
No 62
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=59.80 E-value=4.6e+02 Score=33.19 Aligned_cols=88 Identities=13% Similarity=0.155 Sum_probs=44.9
Q ss_pred HHHHHhhchhhhhHHHHHHHHHHhhccc----CCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHh--HHHHH--HHHHHH
Q psy4474 1631 VNEIQESFPEISTKLQTLSDHIENSSRK----LPSRTNEAMYRDLANLRYDFEKCVSSLSDVKQG--LESRL--VQWNEY 1702 (2174)
Q Consensus 1631 ~~~~~~el~~~~~~~~~l~~~~~~l~~~----~~~~~~~~i~~~l~~l~~~w~~L~~~~~~r~~~--L~~~~--~~~~~f 1702 (2174)
+.-+.+-+......+..+.......... ...+++..+...+..+..+..++...+..-+++ +++.- ..-+.+
T Consensus 50 l~qvr~~~~~Q~seL~~l~~ev~~~~~~peke~~~~~~~~~~n~m~~lD~rLvevre~L~~irr~q~~q~~erk~~~qe~ 129 (531)
T PF15450_consen 50 LLQVRARVQLQDSELMQLRQEVKQRAQVPEKEACEPSSIQNQNQMQQLDKRLVEVREALTQIRRKQALQDSERKGSEQEA 129 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCCCccchhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3333444444444455555444433332 112223334777777888877777777663333 33321 122344
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4474 1703 ETSLGKLITWLNDTEN 1718 (2174)
Q Consensus 1703 ~~~~~~l~~Wl~~~e~ 1718 (2174)
...+..|..||...+.
T Consensus 130 ~~rl~~L~~~Lrqee~ 145 (531)
T PF15450_consen 130 GLRLSKLQDMLRQEEQ 145 (531)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5567777777776543
No 63
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=59.11 E-value=3.3e+02 Score=31.39 Aligned_cols=47 Identities=17% Similarity=0.402 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhHHhh
Q psy4474 916 IKDKIDRLEKETKAQSDRIQDALKTLNQLIGHRKEFEVDVENVEAKLKELEVAV 969 (2174)
Q Consensus 916 i~~~l~~L~~~~~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~~~~WL~e~e~~l 969 (2174)
++..++....++..+...+.. +......+...+..+..-|...+..+
T Consensus 6 l~~eld~~~~~~~~~~~~l~~-------~~~~~~~aE~e~~~l~rri~~lE~~l 52 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKE-------AEKRAEKAEAEVASLQRRIQLLEEEL 52 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555544444444 43444444555555665665555544
No 64
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=57.97 E-value=3.6 Score=56.84 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHhhHHhHHHHHHHHHHHhhhcCCChHHHHHHHHHhhhHH
Q psy4474 1786 YRTIYQDATSHQQDLLQLKDKIESLHQPSEQSKQQLATITTRHG 1829 (2174)
Q Consensus 1786 ~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~i~~~l~~l~~~~~ 1829 (2174)
.+..+.++......+..+......+......+...+..+....+
T Consensus 632 rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~ele 675 (859)
T PF01576_consen 632 RKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELE 675 (859)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555444444443333333344444433333
No 65
>KOG4302|consensus
Probab=56.86 E-value=6.1e+02 Score=33.72 Aligned_cols=44 Identities=34% Similarity=0.486 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4474 1224 SRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHAR 1267 (2174)
Q Consensus 1224 ~l~~~~~~L~~~~~~~~~~~~~~~~~l~~f~~~~~~~~~wl~~~ 1267 (2174)
.|...+..|....+.++.+..++..++......++.+..-|...
T Consensus 100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~ 143 (660)
T KOG4302|consen 100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGP 143 (660)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 56667777777777777777777777777778888888888775
No 66
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=52.99 E-value=6.3e+02 Score=32.73 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=44.6
Q ss_pred cCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccccCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1168 VDGNSATVQEKIDKYDKIIADIQEYEAILATASDKGDQLSSDGTISDRNEITEQLQSRKQQLHNLRKTVEKLRQQNEKRA 1247 (2174)
Q Consensus 1168 ~~~~~~~~~~~l~~~~~l~~el~~~~~~l~~~~~~~~~L~~~~~~~~~~~i~~~~~~l~~~~~~L~~~~~~~~~~~~~~~ 1247 (2174)
.-.+|+.+...+..+...+..+.. ..++.+...+.-+ ||..+ ...+......+..++..++.....+-..+
T Consensus 199 ~~~~P~~~~~~~e~~~~~Q~~l~~--~r~~~L~~l~~l~----Pp~~t---~~~v~eW~~~l~~l~~~~d~~~~~~~~~l 269 (473)
T PF14643_consen 199 EFQNPPERKQLLEQMRKEQVDLHE--KRLELLQSLCDLL----PPNLT---KEKVEEWYASLNALNEQIDEYHQQCMEKL 269 (473)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcCC----CCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777666655543 3333333333222 22211 12355666666666666666655544444
Q ss_pred HH-----HHHHHHHHHHHHHHHHh
Q psy4474 1248 AE-----SEKLGAELEEIIEALHA 1266 (2174)
Q Consensus 1248 ~~-----l~~f~~~~~~~~~wl~~ 1266 (2174)
.. .+.+...+..+..-+..
T Consensus 270 r~~~E~~~~ec~~~ve~~k~~L~~ 293 (473)
T PF14643_consen 270 RALYEKICQECLALVEKLKQELLD 293 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 22344444444444433
No 67
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=52.30 E-value=2.6e+02 Score=28.14 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=48.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhcC-------CC----------hHHHHHHHHHHHHHHHHHHH
Q psy4474 268 LKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESLHQ-------PS----------EQSKQQLATITTRHGNVLKR 330 (2174)
Q Consensus 268 ~~~d~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~-------~~----------~~~~~~~~~l~~r~~~L~~~ 330 (2174)
.+++...++..-.....++.++.+.+..+..+...-..+.+ .+ +.....+.++..||..+..+
T Consensus 11 ~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lel 90 (120)
T PF12325_consen 11 GGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLEL 90 (120)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666667777777777777777777544333221 11 11145777888888888888
Q ss_pred HHHHHHHHHHHHH
Q psy4474 331 AQKFTEAYEGIVS 343 (2174)
Q Consensus 331 ~~~r~~~Le~~~~ 343 (2174)
.+++....++.-.
T Consensus 91 lGEK~E~veEL~~ 103 (120)
T PF12325_consen 91 LGEKSEEVEELRA 103 (120)
T ss_pred hcchHHHHHHHHH
Confidence 8888777766543
No 68
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=51.47 E-value=4.4e+02 Score=30.44 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 173 LEKAIVSVNKRYEDLVDGILKTISQ 197 (2174)
Q Consensus 173 i~~~~~~l~~r~~~l~~~~~~r~~~ 197 (2174)
++..++....++..+...+..-...
T Consensus 6 l~~eld~~~~~~~~~~~~l~~~~~~ 30 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKEAEKR 30 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333333
No 69
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=50.93 E-value=7.5e+02 Score=32.98 Aligned_cols=66 Identities=17% Similarity=0.222 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhHHhhccccccCChHHHHHHHHHHHHH
Q psy4474 916 IKDKIDRLEKETKAQSDRIQDALKTLNQLIGHRKEFEVDVENVEAKLKELEVAVEGDVKTNNVLMLQELLNKYAQL 991 (2174)
Q Consensus 916 i~~~l~~L~~~~~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~~~~WL~e~e~~l~~~~~~~d~~~l~~~l~k~~~l 991 (2174)
+...+..+...|..+...+..... ........++.+..-|.+.+.. .+.+...+.+....+++...
T Consensus 159 ~~~~~~~~~~~~~~~~~~L~~l~~-------~~~~~~~eld~L~~ql~ELe~~---~l~~~E~e~L~~e~~~L~n~ 224 (563)
T TIGR00634 159 KVKAYRELYQAWLKARQQLKDRQQ-------KEQELAQRLDFLQFQLEELEEA---DLQPGEDEALEAEQQRLSNL 224 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHhC---CcCCCcHHHHHHHHHHHhCH
Confidence 444445555555555544443333 2223333344444444444432 22334455555555544333
No 70
>PRK09039 hypothetical protein; Validated
Probab=49.56 E-value=3.9e+02 Score=32.77 Aligned_cols=157 Identities=19% Similarity=0.238 Sum_probs=0.0
Q ss_pred hhHHHHHhhhhhHhhHHHHHHHHHHh-----CCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHH
Q psy4474 1860 LLQEVISHNSDMETLNDKCEALMELA-----AHSPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEA 1934 (2174)
Q Consensus 1860 l~~e~~~~~~~l~~~~~~~~~l~~~~-----~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~~~~ 1934 (2174)
|..++......++.+......|-... ....+...+..++..+. .+..++..|+..+. .-.....+++.
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~----~a~~~r~~Le~~~~---~~~~~~~~~~~ 116 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLS----AAEAERSRLQALLA---ELAGAGAAAEG 116 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHh---hhhhhcchHHH
Q ss_pred HHHhccccccccccchhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHhhhhhhcCCCcchhHHHHHHHHHHHHHH
Q psy4474 1935 WLHKAHATVQECDELEAGIKEEQKNIETQYLQWNSFRETLAQMTAWLDSVEKNIKQEIATPWTTTQELRSKLLKLKEILK 2014 (2174)
Q Consensus 1935 Wl~~~e~~l~~~d~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~l~ 2014 (2174)
=+......|...... +......+..+..++..++.....+...++..+.+.. +...++......|+
T Consensus 117 ~~~~l~~~L~~~k~~---~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~-----------~~~~~i~~L~~~L~ 182 (343)
T PRK09039 117 RAGELAQELDSEKQV---SARALAQVELLNQQIAALRRQLAALEAALDASEKRDR-----------ESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Q ss_pred HHhhh-cCChhhHHHHHHHHHHHHHHH
Q psy4474 2015 KCEKG-VGDHEAFVDKYEECSQKLAQV 2040 (2174)
Q Consensus 2015 ~~~~~-~~~~~~f~~~~~~l~~wl~~~ 2040 (2174)
.+... +. ++...-.+++.-|.++
T Consensus 183 ~a~~~~~~---~l~~~~~~~~~~l~~~ 206 (343)
T PRK09039 183 VALAQRVQ---ELNRYRSEFFGRLREI 206 (343)
T ss_pred HHHHHHHH---HHHHhHHHHHHHHHHH
No 71
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=49.54 E-value=2.6e+02 Score=28.17 Aligned_cols=76 Identities=13% Similarity=0.270 Sum_probs=49.6
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhhhhh--------------ccChhchhhHHHHHHHHHHHHHHHHHHH
Q psy4474 975 TNNVLMLQELLNKYAQLNEEAGELNMMISNVSIATEHM--------------NLNDADRLTVNDSVSSMQKRYAQLSRTI 1040 (2174)
Q Consensus 975 ~~d~~~l~~~l~k~~~l~~ei~~~~~~v~~l~~~~~~L--------------~~~~~~~~~i~~~~~~L~~rw~~L~~~~ 1040 (2174)
|.+...+..+-..++.+..++...+..+..+...-..+ .........+...+..|+.||+.+..++
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELL 91 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455566666666677777777776666664332222 1112244567888889999999999998
Q ss_pred HHHHHHHHHH
Q psy4474 1041 EDRISTVNNK 1050 (2174)
Q Consensus 1041 ~~R~~~Le~~ 1050 (2174)
.+|....++-
T Consensus 92 GEK~E~veEL 101 (120)
T PF12325_consen 92 GEKSEEVEEL 101 (120)
T ss_pred cchHHHHHHH
Confidence 8888877663
No 72
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=49.28 E-value=8.5e+02 Score=33.16 Aligned_cols=45 Identities=7% Similarity=0.227 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHhHHHHHHHH
Q psy4474 1151 IMQIVGFITETTARVGEVDGNSATVQEKIDKYDKIIADIQEYEAIL 1196 (2174)
Q Consensus 1151 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~el~~~~~~l 1196 (2174)
+.++..-+..+...+...+.. ..+..+.+++..+..++......+
T Consensus 400 ~~~~e~el~~l~~~l~~~~~~-e~i~~l~e~l~~l~~~l~~~~~~~ 444 (650)
T TIGR03185 400 LRELEEELAEVDKKISTIPSE-EQIAQLLEELGEAQNELFRSEAEI 444 (650)
T ss_pred HHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445443322 345555555555555555444443
No 73
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=49.28 E-value=3.7e+02 Score=33.05 Aligned_cols=76 Identities=26% Similarity=0.274 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Q psy4474 2001 ELRSKLLKLKEILKKCEKGVGDHEAFVDKYEECSQKLAQVEAKYAKLIEPETSYEELQKRQGQLTALLTEKVDMDVLLN 2079 (2174)
Q Consensus 2001 ~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~l~~wl~~~e~~l~~~~~~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 2079 (2174)
.....+.+....+..+..++. .....+.++..-|+.+..++..-+..-+|-..|-.--..+..|+.++..+..+|-
T Consensus 277 ~~~~~ls~~~~~y~~~s~~V~---~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIG 352 (359)
T PF10498_consen 277 SAQDELSEVQEKYKQASEGVS---ERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIG 352 (359)
T ss_pred HHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 455555555555555555554 4455555666666666666655555555555555556667777777777666653
No 74
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=48.18 E-value=4.9e+02 Score=30.06 Aligned_cols=91 Identities=14% Similarity=0.191 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy4474 485 DDLEKYKALLQEVISHNSDMETLNDKCEALMELAAHSPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEE 564 (2174)
Q Consensus 485 ~~l~~~k~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~~i~~~~~~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~ 564 (2174)
-.+-+.+.|..++...+.+.-.+...-..+.. .-.+..+..+....+.+...++.+...|...+..-+.++.+-.+
T Consensus 56 ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~----~lgkeelqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqq 131 (268)
T PF11802_consen 56 LLMMRVKCLTAELEQWQKRTPEIIPLNPEVLL----TLGKEELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQ 131 (268)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777776554433322211111110 12355677788888888889999999998888888888888888
Q ss_pred HHHHHHHHHHhhhhh
Q psy4474 565 VEAWLHKAHATVQEC 579 (2174)
Q Consensus 565 l~~Wl~~~e~~l~~~ 579 (2174)
+..-+......+...
T Consensus 132 l~~sL~~r~~elk~~ 146 (268)
T PF11802_consen 132 LLESLNKRHEELKNQ 146 (268)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888777777666654
No 75
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=47.32 E-value=4.1e+02 Score=28.93 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhHHHHhcCCCCCCchhhhHHHHHHHHHHHHHHhhhhhhhhhHHhHHHHHHhhcC
Q psy4474 2059 KRQGQLTALLTEKVDMDVLLNACVDLCDKVYESTSEPGHEPLRVQMEKLQQAVEALYDKITVTESLILSQVEAKYAKLIE 2138 (2174)
Q Consensus 2059 ~~~~~~~~l~~~~~~~~~~v~~~~~~~~~ll~~~~~~~~~~i~~~~~~l~~~w~~L~~~~~~R~~~~~~~~~~f~~~~~e 2138 (2174)
..+.+.+.+.++-+.+..+|..++..-..++... ..++.+..+|..-=. ..-.+|+.|-+-+..
T Consensus 85 ~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~-----~~lk~~~~eL~~~~~-----------~Lq~Ql~~~e~l~~~ 148 (193)
T PF14662_consen 85 SLLAQARQLEKEQQSLVAEIETLQEENGKLLAER-----DGLKKRSKELATEKA-----------TLQRQLCEFESLICQ 148 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh-----hhHHHHHHHHHHhhH-----------HHHHHHHHHHHHHHH
Confidence 3455566777777777777777777665554421 223344444433222 122244445444443
Q ss_pred cccc-------HHHHHHhhhhhHHH----HhhhchhhHhhhh
Q psy4474 2139 PETS-------YEELQKRQGQLTAL----LAEKVDMDVLLNA 2169 (2174)
Q Consensus 2139 ~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 2169 (2174)
.+.. ..++...|+..+++ ++|+.++.-++++
T Consensus 149 ~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q 190 (193)
T PF14662_consen 149 RDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQ 190 (193)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333 34444444444554 6677777666544
No 76
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=46.88 E-value=5.8e+02 Score=30.58 Aligned_cols=34 Identities=6% Similarity=0.248 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhcchh----hhhhHHHHHHHHHHHHh
Q psy4474 1410 TKDKADKIKQITKSLPE----GQKLIDKTVALKNNVLE 1443 (2174)
Q Consensus 1410 v~~~l~~~~~~~~el~~----~~~~v~~l~~~~~~L~~ 1443 (2174)
....+++|..+...|.. ....+..|...-..+..
T Consensus 195 f~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~ 232 (296)
T PF13949_consen 195 FEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQ 232 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777666665544 33445555555555543
No 77
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=46.06 E-value=71 Score=43.96 Aligned_cols=29 Identities=10% Similarity=0.089 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHH-hHHHHHHHHHHHHhH
Q psy4474 649 LKSTSTQLKSYIAR-WNELDDLYNRFNMWL 677 (2174)
Q Consensus 649 ~~~r~~~Le~~~~~-~~~f~~~~~~l~~Wl 677 (2174)
+..|..+|.+.+.. ...|.+.|..+..|=
T Consensus 618 ~ekr~~RLkevf~~ks~eFr~av~~llGyk 647 (722)
T PF05557_consen 618 AEKRNQRLKEVFKAKSQEFREAVYSLLGYK 647 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcce
Confidence 34445555444322 246888877777663
No 78
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=45.96 E-value=4.6e+02 Score=29.08 Aligned_cols=169 Identities=15% Similarity=0.143 Sum_probs=88.2
Q ss_pred ccchhHhHHHHHHhhHHHHHHhHhhhHhhhhhHHHHHhHHHHHHhHHHhhhhhcCC-chhhhhHHH-HHHHHHhhhhhhh
Q psy4474 26 KPIVDFRYQLLHVMSKEVINRWQGLVYDHKLYNDVYVKTDDWLTGLEKDLDTLKNT-TDVEAKNSL-LQKLLTEKDQAGH 103 (2174)
Q Consensus 26 ~~~l~~~y~~L~~~~~~r~~~L~~~~~~~q~f~~~~~e~~~Wl~e~e~~l~~~~~~-~~l~~~~~~-~~~l~~e~~~~~~ 103 (2174)
+..+...|..|+.+++.-.+.+......++.|-+. -.=|..++..+.....- .+....+-+ -+.|...
T Consensus 11 L~~~q~~Y~~ll~~~~~l~~~~~~l~qtq~~Lg~~----f~~l~~k~p~l~~af~~~aet~k~l~kng~~Ll~a------ 80 (201)
T cd07660 11 LRDTQRKYESVLRLARALASQFYQMLQTQKALGDA----FADLSQKSPELQEEFTYNAETQKLLCKNGETLLGA------ 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcChHHHHHHHHHHHHHHHHHHhHHHHHHH------
Confidence 44567789999999999999998887666554443 33345555444211100 000000000 0011111
Q ss_pred hhhhhhccccccccccccccchHHHHHHHHHhhhhhhhhhhHHHhhhhhHHHHHHHhhccCCCcchhhhHHHHHHHHHHH
Q psy4474 104 KLTYLTSSGEKLYLDTAAKGREVVRQQLRALRDSKCSKTTLQEVLSHKRIIESLLDKSKSLPQINKDQALEKAIVSVNKR 183 (2174)
Q Consensus 104 ~l~~l~~~g~~l~~~~~~~~~~~i~~~l~~l~~~w~~k~l~~e~~~~~~~v~~l~~~~~~L~~~~~~~~i~~~~~~l~~r 183 (2174)
+..++..-+.++..+.+.+..+|++- ....-|-.++...++.+...+..-...+....++.++.....+
T Consensus 81 -l~~f~s~l~T~~~kai~DT~lTI~~y----------e~aR~EYdayr~D~ee~~~~~~~~~~l~r~~~~q~~~~~~k~k 149 (201)
T cd07660 81 -LNFFVSSLNTLVNKTMEDTLMTVKQY----------ESARIEYDAYRNDLEALNLGPRDAATSARLEEAQRRFQAHKDK 149 (201)
T ss_pred -HHHHHHHHHHHHHhhccHHHHHHHHH----------HhhhHhHHHHhccHHHcccCCCccchHhhHHHHHHHHHHHHHH
Confidence 11111111222222333334455443 3344466666655555443333322234456688888999999
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHH
Q psy4474 184 YEDLVDGILKTISQLEES--LDIFQQFQQLQKAY 215 (2174)
Q Consensus 184 ~~~l~~~~~~r~~~L~~~--~~~~q~~~~~~k~~ 215 (2174)
|+.|+.-+.....-|++. -.++.+......++
T Consensus 150 f~KLR~DV~~Kl~lLeenrv~vm~~QL~~f~~a~ 183 (201)
T cd07660 150 YEKLRNDVSVKLKFLEENKVKVMHKQLLLFHNAI 183 (201)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 999999999999888753 23333333344443
No 79
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=45.69 E-value=2.7e+02 Score=34.19 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHHHh
Q psy4474 558 FLAKKEEVEAWLHKAHATVQECAGNGSKNVLKERLDTVNMVAER 601 (2174)
Q Consensus 558 f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~e 601 (2174)
+..-+..+..|-..+...+.. +...+...++..+..-..|--+
T Consensus 108 L~~l~~~ve~f~~~a~~~L~~-~~~~~~~~le~Ll~~g~s~~v~ 150 (335)
T PF08429_consen 108 LKELLEEVEEFQSRAQEALSD-PESPSLEELEELLEEGESFGVD 150 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cccCCHHHHHHHHHhcccCcee
Confidence 444556667777777766655 3344555565555555444333
No 80
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=44.81 E-value=5.8e+02 Score=29.99 Aligned_cols=199 Identities=9% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhchhh
Q psy4474 1562 KDLIQVGVHGLQVELNALLQNIEAEINKVANAAQERKAMQDKISKLQSWLKQYIDYSGNKQALQSRLDKVNEIQESFPEI 1641 (2174)
Q Consensus 1562 ~~~i~~~~~~l~~rw~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~wl~~~e~~~~d~~~~~~~l~k~~~~~~el~~~ 1641 (2174)
+..+..+..++..+.+.+...+...+..-.+....++.+...+..+..-.+.+-..++++..++.-++.+.-+.....-.
T Consensus 50 vrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~ 129 (294)
T COG1340 50 VRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLT 129 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCC
Q ss_pred hhHHHHHHHHHHhhcccCCCCCchH-HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1642 STKLQTLSDHIENSSRKLPSRTNEA-MYRDLANLRYDFEKCVSSLSDVKQGLESRLVQWNEYETSLGKLITWLNDTENVL 1720 (2174)
Q Consensus 1642 ~~~~~~l~~~~~~l~~~~~~~~~~~-i~~~l~~l~~~w~~L~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~Wl~~~e~~L 1720 (2174)
-..=..+.+....|...+....... ....+.++...-+.+.....+-...+..-...++.|+..+..+-.=.+++....
T Consensus 130 ~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkea 209 (294)
T COG1340 130 PEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEA 209 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhccCCCChhhHhhHHHHHhhhccccchHHHHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHhhHHhHHHH
Q psy4474 1721 KNFTLQPTLNEKKQQRELKGKLSSWCGYEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDL 1800 (2174)
Q Consensus 1721 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~wl~~~e~~l~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~ 1800 (2174)
..+ +..+-.-...+..+-..+..++.+|......+
T Consensus 210 de~---------------------------------------------he~~ve~~~~~~e~~ee~~~~~~elre~~k~i 244 (294)
T COG1340 210 DEL---------------------------------------------HEEFVELSKKIDELHEEFRNLQNELRELEKKI 244 (294)
T ss_pred HHH---------------------------------------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q psy4474 1801 LQLKD 1805 (2174)
Q Consensus 1801 ~~l~~ 1805 (2174)
..+..
T Consensus 245 k~l~~ 249 (294)
T COG1340 245 KALRA 249 (294)
T ss_pred HHHHH
No 81
>PRK01156 chromosome segregation protein; Provisional
Probab=43.92 E-value=1.2e+03 Score=33.32 Aligned_cols=19 Identities=5% Similarity=0.302 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4474 1222 LQSRKQQLHNLRKTVEKLR 1240 (2174)
Q Consensus 1222 ~~~l~~~~~~L~~~~~~~~ 1240 (2174)
+......+..+......+.
T Consensus 471 i~~~~~~i~~l~~~i~~l~ 489 (895)
T PRK01156 471 INHYNEKKSRLEEKIREIE 489 (895)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 82
>KOG4593|consensus
Probab=43.80 E-value=9.1e+02 Score=31.91 Aligned_cols=507 Identities=12% Similarity=0.080 Sum_probs=0.0
Q ss_pred hhHhHHHHHHhhHHHHHHhHhhhHhhhhhHHHHHhHHHHHHhHHHhhhhhcCCch-hhhhHHHHHHHHHhhhhhhhhhhh
Q psy4474 29 VDFRYQLLHVMSKEVINRWQGLVYDHKLYNDVYVKTDDWLTGLEKDLDTLKNTTD-VEAKNSLLQKLLTEKDQAGHKLTY 107 (2174)
Q Consensus 29 l~~~y~~L~~~~~~r~~~L~~~~~~~q~f~~~~~e~~~Wl~e~e~~l~~~~~~~~-l~~~~~~~~~l~~e~~~~~~~l~~ 107 (2174)
+..-|..+...+......+++.....+.-.....++ +.+++..+........ ..+.+.+++.=..-....-..+..
T Consensus 110 l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el---~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s 186 (716)
T KOG4593|consen 110 LRQLQEALKGQEEKLQEQLERNRNQCQANLKKELEL---LREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHS 186 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhccccccccccccccchHHHHHHHHHhhhhhhhhhhHHHhhhhhHHHHHHHhhccCCCcchhhhHHHHHHHHHHHHHHH
Q psy4474 108 LTSSGEKLYLDTAAKGREVVRQQLRALRDSKCSKTTLQEVLSHKRIIESLLDKSKSLPQINKDQALEKAIVSVNKRYEDL 187 (2174)
Q Consensus 108 l~~~g~~l~~~~~~~~~~~i~~~l~~l~~~w~~k~l~~e~~~~~~~v~~l~~~~~~L~~~~~~~~i~~~~~~l~~r~~~l 187 (2174)
.+..-++.+... ...++...+.+ .+..+.+.+....-......-..|.....-..|...+.+.-..-..+
T Consensus 187 ~l~~~eke~~~~----~~ql~~~~q~~------~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l 256 (716)
T KOG4593|consen 187 ELQNEEKELDRQ----HKQLQEENQKI------QELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEEL 256 (716)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHhhhhc-----hHHHhhhhhhchhhHHHH------------
Q psy4474 188 VDGILKTISQLE---ESLDIFQQFQQLQKAYQEDQKQLWDKLSSL-----TERELKGKLSSWCGYEES------------ 247 (2174)
Q Consensus 188 ~~~~~~r~~~L~---~~~~~~q~~~~~~k~~~~~~~~~~~~l~~~-----~~~~l~~~l~~w~~f~~~------------ 247 (2174)
.....++...+. +.......++.-.+.++..+..+..-...+ ..-.|...+..|.++...
T Consensus 257 ~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~~~~~~~~~~~ 336 (716)
T KOG4593|consen 257 ERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMGSLRTPEDLME 336 (716)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHH
Q ss_pred --HHHHHHHHHHHHhhhccccccCCCHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q psy4474 248 --VATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESLHQPSEQSKQQLATITTRHG 325 (2174)
Q Consensus 248 --~~~l~~WL~e~e~~l~~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~~~~l~~r~~ 325 (2174)
+.+...|..-.. ...+-..+...+..+...++.-..--..|......+..+...-..+............+++..+.
T Consensus 337 ~~~~e~s~~~~l~~-~~~t~~s~~~~~~r~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~ 415 (716)
T KOG4593|consen 337 KLVNEQSRNANLKN-KNSTVTSPARGLERARQLLKEELKQVAGITEEETKLKELHETLARRLQKRALLLTQERDLNRAIL 415 (716)
T ss_pred HHHHHHHHHhhhcc-ccccccCcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHhhHHHHHHHHHHHHHHHhhhhhhHHHHhh
Q psy4474 326 NVLKRAQKFTEAYEGIVSIHQAYTKAVLDTQEWIDATYNAVNMWGDLTLERVSLHSNLERLKNLEKELGRIGHKTVALKN 405 (2174)
Q Consensus 326 ~L~~~~~~r~~~Le~~~~~~~~f~~~~~~~~~Wl~~~~~~l~~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~~~~l~~ 405 (2174)
........-...|........+|...|..+..-..+.+.. .......+....++...++..+.++...+.....
T Consensus 416 ~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s------~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q 489 (716)
T KOG4593|consen 416 GSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEAS------MEELYREITGQKKRLEKLEHELKDLQSQLSSREQ 489 (716)
T ss_pred hccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCcHH
Q psy4474 406 NVLESTGPIGKENINQEINQITLDWTNLQNTLQVIDKHHAKCLSIWNDFLSSKNTLEKWIEGFQKKIEAEKDIGDCTNLD 485 (2174)
Q Consensus 406 ~~l~~~~~~~~~~i~~~~~~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~~~~~~l~~~~~~~~~~~~~ 485 (2174)
.+.......+.. ...+.+...+-+.|..--..-+..++... ....|......+...-..-........-.....+.+
T Consensus 490 ~l~~qr~e~~~~--~e~i~~~~ke~~~Le~En~rLr~~~e~~~-l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~Lqa 566 (716)
T KOG4593|consen 490 SLLFQREESELL--REKIEQYLKELELLEEENDRLRAQLERRL-LQGDYEENITRVLHMSTNPTSKARQIKKNRLEELQA 566 (716)
T ss_pred HHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhccceeeecCCchHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy4474 486 DLEKYKALLQEVISHNSDMETLNDKCEALMELAAH-SPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEF 558 (2174)
Q Consensus 486 ~l~~~k~l~~ei~~~~~~l~~l~~~~~~L~~~~~~-~~i~~~~~~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f 558 (2174)
-++.++.....+....+.+....-....+...... ..++........+...+...+..+......++..+--|
T Consensus 567 E~~~lk~~l~~le~~~~~~~d~~i~~~s~~~~~~ev~qlk~ev~s~ekr~~rlk~vF~~ki~eFr~ac~sL~Gy 640 (716)
T KOG4593|consen 567 ELERLKERLTALEGDKMQFRDGEIAVHSLLAFSKEVAQLKKEVESAEKRNQRLKEVFASKIQEFRDACYSLLGY 640 (716)
T ss_pred HHHHHHHHHHHHhccCCcccchhhHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
No 83
>KOG4302|consensus
Probab=41.33 E-value=1e+03 Score=31.78 Aligned_cols=29 Identities=10% Similarity=0.180 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1023 NDSVSSMQKRYAQLSRTIEDRISTVNNKL 1051 (2174)
Q Consensus 1023 ~~~~~~L~~rw~~L~~~~~~R~~~Le~~l 1051 (2174)
...++.|+.-|+.+...-.+|-..|...-
T Consensus 17 ~~~~~eL~~IW~~igE~~~e~d~~l~~le 45 (660)
T KOG4302|consen 17 GNLLNELQKIWDEIGESETERDKKLLRLE 45 (660)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34556688889999999988887777653
No 84
>PRK10869 recombination and repair protein; Provisional
Probab=40.98 E-value=1e+03 Score=31.62 Aligned_cols=38 Identities=8% Similarity=-0.074 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhhhccccccCCCHHHHHHHHHHHHHHH
Q psy4474 245 EESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIY 286 (2174)
Q Consensus 245 ~~~~~~l~~WL~e~e~~l~~~~~~~~d~~~~~~~l~~~~~l~ 286 (2174)
.+..+-+.-=+++.+. ..+-+...+.++...++....+
T Consensus 184 ~~~~d~l~fql~Ei~~----~~l~~gE~eeL~~e~~~L~n~e 221 (553)
T PRK10869 184 AARKQLLQYQLKELNE----FAPQPGEFEQIDEEYKRLANSG 221 (553)
T ss_pred HHHHHHHHHHHHHHHh----CCCCCCcHHHHHHHHHHHHHHH
Confidence 3444444444555542 2333445555665555444433
No 85
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=40.42 E-value=4.6e+02 Score=27.48 Aligned_cols=92 Identities=13% Similarity=0.208 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHhHhhhhhhhccChhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 981 LQELLNKYAQLNEEAGELNMMISNVSIATEHMNLNDADRLTVNDSVSSMQKRYAQLSRTIEDRISTVNNKLQSVKRLQHK 1060 (2174)
Q Consensus 981 l~~~l~k~~~l~~ei~~~~~~v~~l~~~~~~L~~~~~~~~~i~~~~~~L~~rw~~L~~~~~~R~~~Le~~l~~~~~f~~~ 1060 (2174)
+..+..+++.+..++......+..+................+..++..|....+.....+..-..+|..+-.....|...
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRk 116 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERK 116 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44455566666666666666665554433322111122235566666666666666666666666666665555556555
Q ss_pred HHHHHHHHHHHH
Q psy4474 1061 VEEAKALLQKAE 1072 (2174)
Q Consensus 1061 ~~~~~~wl~~~e 1072 (2174)
+..+..-....+
T Consensus 117 v~~le~~~~~~E 128 (143)
T PF12718_consen 117 VKALEQERDQWE 128 (143)
T ss_pred HHHHHhhHHHHH
Confidence 555544444444
No 86
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=40.18 E-value=7.7e+02 Score=30.06 Aligned_cols=49 Identities=10% Similarity=0.145 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 422 EINQITLDWTNLQNTLQVIDKHHAKCLSIWNDFLSSKNTLEKWIEGFQK 470 (2174)
Q Consensus 422 ~~~~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~~~~~ 470 (2174)
.+..+......+...+..++..+.............+..+..=+.+...
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~ 258 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLA 258 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555554444444444444443333333
No 87
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=39.57 E-value=1.1e+03 Score=31.51 Aligned_cols=32 Identities=9% Similarity=0.126 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHH
Q psy4474 2005 KLLKLKEILKKCEKGVGDHEAFVDKYEECSQKLAQ 2039 (2174)
Q Consensus 2005 ~~~~~~~~l~~~~~~~~~~~~f~~~~~~l~~wl~~ 2039 (2174)
.+.+.|..|.......+ .|.+.+++|..+|+.
T Consensus 558 ~lh~~c~~Li~~v~~tG---~~~rEirdLe~qI~~ 589 (594)
T PF05667_consen 558 SLHENCSQLIETVEETG---TISREIRDLEEQIDT 589 (594)
T ss_pred HHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHH
Confidence 35556666666666566 677777777777665
No 88
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=39.43 E-value=7.6e+02 Score=29.79 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4474 342 VSIHQAYTKAVLDTQEWIDATYNAVN 367 (2174)
Q Consensus 342 ~~~~~~f~~~~~~~~~Wl~~~~~~l~ 367 (2174)
++.++-|.-.|.++..||.+-...+.
T Consensus 62 iP~LElY~~sC~EL~~~I~egr~~~~ 87 (312)
T smart00787 62 VPLLELYQFSCKELKKYISEGRDLFK 87 (312)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999987555443
No 89
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=39.36 E-value=5.9e+02 Score=28.48 Aligned_cols=60 Identities=10% Similarity=0.046 Sum_probs=29.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhhHhhhhhhcCCCcchhHHHHHHHHHHHHHHHHhh
Q psy4474 1959 NIETQYLQWNSFRETLAQMTAWLDSVEKNIKQEIATPWTTTQELRSKLLKLKEILKKCEK 2018 (2174)
Q Consensus 1959 ~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~ 2018 (2174)
.+..+...+..+.-....+..+...+....+.|+......+.++..+..-..-.|+..+.
T Consensus 94 rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~ 153 (201)
T PF13851_consen 94 RLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQ 153 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444455555555555555533333334444555555555555555443
No 90
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=39.22 E-value=8.1e+02 Score=30.03 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhccCCCChh-hHhhHHHHHhhh---ccc-cchHHHHHHHHHHHHHHHhhcc
Q psy4474 1711 TWLNDTENVLKNFTLQPTLN-EKKQQRELKGKL---SSW-CGYEESVATLLDWLKVTEKKLG 1767 (2174)
Q Consensus 1711 ~Wl~~~e~~L~~~~~~~~~~-~~~~~~~~~~~l---~~~-~~~~~~~~~~~~wl~~~e~~l~ 1767 (2174)
.|...+...|.. ++.|... ...-+.+.+..- ... ......|...-.|+......+.
T Consensus 2 ~W~~k~~~~l~~-~~k~~L~~l~~Ll~e~e~~~~~~~~l~~~L~~~v~~a~~~~~~a~~~l~ 62 (335)
T PF08429_consen 2 TWAEKVKEALEE-SPKPSLKELRSLLSEGEKIPFPLPELLENLRNFVKRAESWVEKAQQLLS 62 (335)
T ss_pred hhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 688888888873 3444432 222233322211 111 2234445566667776666654
No 91
>PRK01156 chromosome segregation protein; Provisional
Probab=38.92 E-value=1.4e+03 Score=32.66 Aligned_cols=12 Identities=8% Similarity=-0.285 Sum_probs=6.0
Q ss_pred ccCChHHHHHHH
Q psy4474 974 KTNNVLMLQELL 985 (2174)
Q Consensus 974 ~~~d~~~l~~~l 985 (2174)
.+-|+.......
T Consensus 836 ~~lD~~~~~~l~ 847 (895)
T PRK01156 836 AFLDEDRRTNLK 847 (895)
T ss_pred CcCCHHHHHHHH
Confidence 355665554443
No 92
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=38.84 E-value=7.8e+02 Score=29.76 Aligned_cols=21 Identities=5% Similarity=0.167 Sum_probs=12.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHH
Q psy4474 914 SPIKDKIDRLEKETKAQSDRI 934 (2174)
Q Consensus 914 ~~i~~~l~~L~~~~~~l~~~~ 934 (2174)
..+..-+..+...|.......
T Consensus 165 ~dL~~~L~eiR~~ye~~~~~~ 185 (312)
T PF00038_consen 165 SDLSAALREIRAQYEEIAQKN 185 (312)
T ss_dssp --HHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHhhh
Confidence 456777777777776555433
No 93
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=38.08 E-value=8.3e+02 Score=29.80 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4474 449 SIWNDFLSSKNTLEKWIEGFQKKIEA 474 (2174)
Q Consensus 449 ~~~~~f~~~~~~l~~Wl~~~~~~l~~ 474 (2174)
..+.-|...|.+|..||.+....+..
T Consensus 68 P~Lely~~~c~EL~~~I~egr~~~~~ 93 (325)
T PF08317_consen 68 PMLELYQFSCRELKKYISEGRQIFEE 93 (325)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888899999999988887765
No 94
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=36.94 E-value=5.1e+02 Score=27.63 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy4474 2006 LLKLKEILKKCEKGVGDHEAFVDKYEECSQKLAQVEAKYAKLIEPE 2051 (2174)
Q Consensus 2006 ~~~~~~~l~~~~~~~~~~~~f~~~~~~l~~wl~~~e~~l~~~~~~~ 2051 (2174)
+...|+.|-..+..+. .+.+.|..-+..++.++.-...+..||
T Consensus 47 l~~~ce~Ll~eq~~L~---~~ae~I~~~L~yF~~Ld~itr~Ln~p~ 89 (157)
T PF04136_consen 47 LHEACEQLLEEQTRLE---ELAEEISEKLQYFEELDPITRRLNSPG 89 (157)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhHHHhhHHHHHHHHcCCC
Confidence 4444444444444444 666777776666666655444444333
No 95
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=36.70 E-value=1.2e+03 Score=31.16 Aligned_cols=113 Identities=11% Similarity=0.176 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCC-CCCC---HHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHhhHHHHhcCC-CCCCc
Q psy4474 2025 AFVDKYEECSQKLAQVEAKYAKLIE-PETS---YEELQKRQGQLTALLTEKVDMDVLLN-ACVDLCDKVYESTS-EPGHE 2098 (2174)
Q Consensus 2025 ~f~~~~~~l~~wl~~~e~~l~~~~~-~~~d---~~~~~~~~~~~~~l~~~~~~~~~~v~-~~~~~~~~ll~~~~-~~~~~ 2098 (2174)
.+...+.+...-|.++...+....+ ...| ++.++..+..++.+.+++..--..+- .....-..+-.-.. ..+..
T Consensus 270 ~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le 349 (563)
T TIGR00634 270 ELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLE 349 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3344444444455555554443222 3334 46677777777777777653222222 22222222222122 22334
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhh----hhhHHhHHHHHHhhc
Q psy4474 2099 PLRVQMEKLQQAVEALYDKITVTE----SLILSQVEAKYAKLI 2137 (2174)
Q Consensus 2099 ~i~~~~~~l~~~w~~L~~~~~~R~----~~~~~~~~~f~~~~~ 2137 (2174)
.++.+++.+...+..+...+...+ ......+..+...+.
T Consensus 350 ~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~L~ 392 (563)
T TIGR00634 350 ALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKALA 392 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 566666666666666666555544 344455555665544
No 96
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=35.62 E-value=1.2e+03 Score=31.01 Aligned_cols=28 Identities=4% Similarity=0.240 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1023 NDSVSSMQKRYAQLSRTIEDRISTVNNK 1050 (2174)
Q Consensus 1023 ~~~~~~L~~rw~~L~~~~~~R~~~Le~~ 1050 (2174)
..++..|...|+....++.+....|...
T Consensus 407 ~~rl~~L~~qWe~~R~pL~~e~r~lk~~ 434 (594)
T PF05667_consen 407 EQRLVELAQQWEKHRAPLIEEYRRLKEK 434 (594)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5678889999999999888888888765
No 97
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=33.93 E-value=1.2e+03 Score=30.38 Aligned_cols=298 Identities=12% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 272 LDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESLHQPSEQSKQQLATITTRHGNVLKRAQKFTEAYEGIVSIHQAYTKA 351 (2174)
Q Consensus 272 ~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~~~~l~~r~~~L~~~~~~r~~~Le~~~~~~~~f~~~ 351 (2174)
......+++....|+.++...+..++.+...-....+....-......+...+..+..-...-...+......+..+...
T Consensus 149 qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEed 228 (546)
T PF07888_consen 149 QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEED 228 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhccccccccHhhHH-HHHHHHHHHHHHHhhhhhhHHHHhhhhhhccCccccccHHHHHHHHHHHH
Q psy4474 352 VLDTQEWIDATYNAVNMWGDLTLERVSLH-SNLERLKNLEKELGRIGHKTVALKNNVLESTGPIGKENINQEINQITLDW 430 (2174)
Q Consensus 352 ~~~~~~Wl~~~~~~l~~~~~~~~d~~~~~-~~l~~~~~l~~~l~~~~~~~~~l~~~~l~~~~~~~~~~i~~~~~~l~~~w 430 (2174)
+..+..-..+....+........+..... .+..+++.....+.........+. .....+..++..+..+.
T Consensus 229 i~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~---------~e~e~LkeqLr~~qe~l 299 (546)
T PF07888_consen 229 IKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQ---------QENEALKEQLRSAQEQL 299 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH---------HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCcHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy4474 431 TNLQNTLQVIDKHHAKCLSIWNDFLSSKNTLEKWIEGFQKKIEAEKDIGDCTNLDDLEKYKALLQEVISHNSDMETLNDK 510 (2174)
Q Consensus 431 ~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~~~~~~l~~~~~~~~~~~~~~l~~~k~l~~ei~~~~~~l~~l~~~ 510 (2174)
..-...+.--...|.++......-....-...-=.......+......=-......-+.-.+++..+...+..|..|...
T Consensus 300 qaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~e 379 (546)
T PF07888_consen 300 QASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSRE 379 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q ss_pred HHHHHHhccC---------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy4474 511 CEALMELAAH---------SPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQE 578 (2174)
Q Consensus 511 ~~~L~~~~~~---------~~i~~~~~~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~ 578 (2174)
-..+...... ..+...-+.-...-.+....+.+....|.-+...-..+..+.++|...|...+..+..
T Consensus 380 l~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~ 456 (546)
T PF07888_consen 380 LQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDK 456 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 98
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=33.90 E-value=20 Score=49.78 Aligned_cols=11 Identities=36% Similarity=0.407 Sum_probs=0.0
Q ss_pred HHHHHHHHHhh
Q psy4474 989 AQLNEEAGELN 999 (2174)
Q Consensus 989 ~~l~~ei~~~~ 999 (2174)
..+..++....
T Consensus 612 ~~l~~elee~~ 622 (859)
T PF01576_consen 612 RALQAELEELR 622 (859)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 99
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=33.16 E-value=5.9e+02 Score=26.66 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q psy4474 1177 EKIDKYDKIIADIQEYEAILA 1197 (2174)
Q Consensus 1177 ~~l~~~~~l~~el~~~~~~l~ 1197 (2174)
.+-.+++.+..+++.....+.
T Consensus 77 ~l~rriq~LEeele~ae~~L~ 97 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLK 97 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHH
Confidence 333344444444444433333
No 100
>PRK10869 recombination and repair protein; Provisional
Probab=33.11 E-value=1.3e+03 Score=30.61 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=9.5
Q ss_pred ccCChHHHHHHHHHHHHHH
Q psy4474 974 KTNNVLMLQELLNKYAQLN 992 (2174)
Q Consensus 974 ~~~d~~~l~~~l~k~~~l~ 992 (2174)
.+...+.+....+++...+
T Consensus 203 ~~gE~eeL~~e~~~L~n~e 221 (553)
T PRK10869 203 QPGEFEQIDEEYKRLANSG 221 (553)
T ss_pred CCCcHHHHHHHHHHHHHHH
Confidence 3444555555555544443
No 101
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=31.52 E-value=3.4e+02 Score=27.17 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4474 1219 TEQLQSRKQQLHNLRKT 1235 (2174)
Q Consensus 1219 ~~~~~~l~~~~~~L~~~ 1235 (2174)
.++...+.-+...|...
T Consensus 76 ~er~E~Le~ri~tLekQ 92 (119)
T COG1382 76 EERKETLELRIKTLEKQ 92 (119)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444343333333
No 102
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=29.43 E-value=8.6e+02 Score=27.39 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhchHHHhhhhhhchhhHHHHHHHHHHH
Q psy4474 176 AIVSVNKRYEDLVDGIL-KTISQLEESLDIFQQFQQLQKAYQEDQKQLWDKLSSLTERELKGKLSSWCGYEESVATLLDW 254 (2174)
Q Consensus 176 ~~~~l~~r~~~l~~~~~-~r~~~L~~~~~~~q~~~~~~k~~~~~~~~~~~~l~~~~~~~l~~~l~~w~~f~~~~~~l~~W 254 (2174)
++.++..+...+....+ .---.|-+.+..|-.|....|++ |++.+..+..|
T Consensus 84 ~laev~eki~~l~~~~A~~e~l~L~e~L~~Y~r~~~A~Kdl----------------------------l~rR~r~l~~~ 135 (218)
T cd07662 84 KVSELFDKTRKIEARVAADEDLKLSDLLKYYLRESQAAKDL----------------------------LYRRSRSLVDY 135 (218)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHH
Confidence 34444455555555443 33347788888888888888888 88888888888
Q ss_pred HHH
Q psy4474 255 LKV 257 (2174)
Q Consensus 255 L~e 257 (2174)
=+-
T Consensus 136 enA 138 (218)
T cd07662 136 ENA 138 (218)
T ss_pred HHH
Confidence 553
No 103
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=29.41 E-value=9.5e+02 Score=27.88 Aligned_cols=85 Identities=13% Similarity=0.048 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHhhHHHHhcCCCCCCchhhhHHHHHHHHHHHHHHhhh-h--hh-hhhHHhHHHHHHhhcCccccHHHHH
Q psy4474 2072 VDMDVLLNACVDLCDKVYESTSEPGHEPLRVQMEKLQQAVEALYDKIT-V--TE-SLILSQVEAKYAKLIEPETSYEELQ 2147 (2174)
Q Consensus 2072 ~~~~~~v~~~~~~~~~ll~~~~~~~~~~i~~~~~~l~~~w~~L~~~~~-~--R~-~~~~~~~~~f~~~~~e~~~~~~~~~ 2147 (2174)
+..+.+++.++..++.++..-+..--..-++.+..+...|..-...+. . +. -.....+..|-...++.+.-+..|.
T Consensus 134 ~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~ 213 (258)
T PF15397_consen 134 DSQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLR 213 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777666543221001111222222222322111111 1 11 2345556666666666677777766
Q ss_pred HhhhhhHHH
Q psy4474 2148 KRQGQLTAL 2156 (2174)
Q Consensus 2148 ~~~~~~~~~ 2156 (2174)
.++++|++-
T Consensus 214 ~eV~~L~~~ 222 (258)
T PF15397_consen 214 AEVEQLQAQ 222 (258)
T ss_pred HHHHHHHHh
Confidence 666666654
No 104
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=27.66 E-value=9.8e+02 Score=28.76 Aligned_cols=124 Identities=11% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHhhhcCCHHHHHHHH
Q psy4474 1566 QVGVHGLQVELNALLQNIEAEINKVANAAQERKAMQDKISKLQS-----------------WLKQYIDYSGNKQALQSRL 1628 (2174)
Q Consensus 1566 ~~~~~~l~~rw~~l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~-----------------wl~~~e~~~~d~~~~~~~l 1628 (2174)
+.++..+..+|..+...+.+....+.+... +.|.+-.+++.. |+..++......-.-..-.
T Consensus 178 q~~~~~l~~a~~~yq~a~~ey~~~~~~~~~--ks~e~~~~~l~~~~~~g~~v~s~re~~d~W~~~ae~~~~e~~~S~efa 255 (320)
T TIGR01834 178 QSQLQRLFRDWMEYQQAMADYQLLEADIGY--KSFAALMSDLLARAKSGKPVKTAKALYDLWVIAAEEAYAEVFASEENA 255 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHcCHHHH
Q ss_pred HHHHHHHhhchhhhhHHHHHHHHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHh
Q psy4474 1629 DKVNEIQESFPEISTKLQTLSDHIENSSRKLPSRTNEAMYRDLANLRYDFEKCVSSLSDVKQG 1691 (2174)
Q Consensus 1629 ~k~~~~~~el~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~~~l~~l~~~w~~L~~~~~~r~~~ 1691 (2174)
+-+-.+....-..+..+..+.+..-..+.......-+++.++|.+|+.+-..|...+.+....
T Consensus 256 k~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 256 KVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 105
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=27.22 E-value=3.2e+02 Score=27.06 Aligned_cols=106 Identities=11% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccccCCCcccHhHHHHHHHHHHHH
Q psy4474 1149 TLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKIIADIQEYEAILATASDKGDQLSSDGTISDRNEITEQLQSRKQQ 1228 (2174)
Q Consensus 1149 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~el~~~~~~l~~~~~~~~~L~~~~~~~~~~~i~~~~~~l~~~ 1228 (2174)
..+.++..-+..+...+..+......+...+..|.....+|....+.-.-....|.-|+...-....+.+..++..+...
T Consensus 3 ~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~ 82 (110)
T TIGR02338 3 PQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELR 82 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1229 LHNLRKTVEKLRQQNEKRAAESEKLG 1254 (2174)
Q Consensus 1229 ~~~L~~~~~~~~~~~~~~~~~l~~f~ 1254 (2174)
...+......+...+.+....++...
T Consensus 83 i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 83 VKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
No 106
>PHA02562 46 endonuclease subunit; Provisional
Probab=26.91 E-value=1.6e+03 Score=29.79 Aligned_cols=231 Identities=12% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCChHHHHHHHHHHHHHHHHHHhhcC
Q psy4474 1026 VSSMQKRYAQLSRTIEDRISTVNNKLQSVKRLQHKVEEAKALLQKAESQLARPVSTQAEDISEALTVYQKLLDEINSWKN 1105 (2174)
Q Consensus 1026 ~~~L~~rw~~L~~~~~~R~~~Le~~l~~~~~f~~~~~~~~~wl~~~e~~l~~~~~~~~~~~~~~l~~~~~l~~el~~~~~ 1105 (2174)
+.........+...+.+-...+...-.........+..+..-+...+...
T Consensus 162 ~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~------------------------------ 211 (562)
T PHA02562 162 ISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKN------------------------------ 211 (562)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------------------------------
Q ss_pred CCChhhHHHHHHHhhcHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHH
Q psy4474 1106 SQSDEDLVHLADSIKPLDEVVERIENHAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKI 1185 (2174)
Q Consensus 1106 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~L~~~~~~~~~f~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l 1185 (2174)
..........+..+......+...+..+..-+.++...+.++...+..+...+.+.+.-
T Consensus 212 ---------------------~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~ 270 (562)
T PHA02562 212 ---------------------GENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSK 270 (562)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHH--HHhhccccccCCCcccHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1186 IADIQEYEAILAT--ASDKGDQLSSDGTISDRNEITEQLQSRKQQLHNLRKTVE---KLRQQNEKRAAESEKLGAELEEI 1260 (2174)
Q Consensus 1186 ~~el~~~~~~l~~--~~~~~~~L~~~~~~~~~~~i~~~~~~l~~~~~~L~~~~~---~~~~~~~~~~~~l~~f~~~~~~~ 1260 (2174)
...+..-..-+.. ....|..-.... +.....+...+..++.++..+..... ....+.......+......+...
T Consensus 271 l~~~~~~~~~~~~~~~Cp~C~~~~~~~-~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~ 349 (562)
T PHA02562 271 IEQFQKVIKMYEKGGVCPTCTQQISEG-PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTN 349 (562)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhccccCCCchhhhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy4474 1261 IEALHARETAVPSSSRLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHA 1314 (2174)
Q Consensus 1261 ~~wl~~~~~~l~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1314 (2174)
..-+....... ..+...++.+.....+....+..+...+..+......
T Consensus 350 ~~~i~~~~~~~------~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~ 397 (562)
T PHA02562 350 KQSLITLVDKA------KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSE 397 (562)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHH
No 107
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.26 E-value=1.6e+03 Score=29.63 Aligned_cols=61 Identities=5% Similarity=-0.021 Sum_probs=41.8
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHhhHHHHhcC---CCCCCchhhhHHHHHHHHHHHHHHhhhhhh
Q psy4474 2062 GQLTALLTEKVDMDVLLNACVDLCDKVYEST---SEPGHEPLRVQMEKLQQAVEALYDKITVTE 2122 (2174)
Q Consensus 2062 ~~~~~l~~~~~~~~~~v~~~~~~~~~ll~~~---~~~~~~~i~~~~~~l~~~w~~L~~~~~~R~ 2122 (2174)
.--+.|++.+++...++..+++..-..+.+. .+....++...++.+-+.-..|.+..+++-
T Consensus 776 ~~r~~LqkrIDa~na~Lrrl~~~Iig~m~~~k~~~~a~~~e~~ael~~ipey~~rL~~L~~D~L 839 (1104)
T COG4913 776 EHRRQLQKRIDAVNARLRRLREEIIGRMSDAKKEDTAALSEVGAELDDIPEYLARLQTLTEDAL 839 (1104)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhhccCHhHHHHHHHHHHhhhhhhH
Confidence 3445677888888888888887665555542 244445677777888888777777766655
No 108
>KOG0933|consensus
Probab=25.71 E-value=2e+03 Score=30.39 Aligned_cols=137 Identities=14% Similarity=0.203 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhhhCCCCC--cccccchhhhhHHhhhhHHhh
Q psy4474 633 EAMTVLRDSWDRLNRDLKSTSTQLKSYIARWNELDDLYNRFNMWLSGVENKLNEPSP--VFTEIDLNTKWQQYVNDELEW 710 (2174)
Q Consensus 633 ~~~~~l~~~w~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~ 710 (2174)
..+..+...-......+..+...+......+....+.......-+...+..+++... .+.+- .+..+
T Consensus 329 ~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~-----------~e~~l 397 (1174)
T KOG0933|consen 329 EKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNED-----------EEKTL 397 (1174)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc-----------chhhH
Confidence 445555555566666666666666665544444444445555555555554443211 11111 11223
Q ss_pred hhhhhhHHHHHhhhHhHHHHHHHHHHHHHHHHHHchhChHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHH
Q psy4474 711 ENHSQNTLQWLDNIRSDMKTLLERSKHIVDDIEKKKDDLKPIQKEAQQLSEWDSSIVPKVSDLETRWAAV 780 (2174)
Q Consensus 711 ~~~~~~~l~~l~~~~~~~~~~l~k~~~l~~el~~~~~~l~~l~~~~~~L~~~~~~i~~~l~~L~~rw~~L 780 (2174)
+.++.+.-..++.....+...--+++.+..+|....+.+..........+...+.+...+..+..+...|
T Consensus 398 ~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l 467 (1174)
T KOG0933|consen 398 EDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSL 467 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444444555555666666677777777777777666555544444443344444444444444443
No 109
>PRK09343 prefoldin subunit beta; Provisional
Probab=25.40 E-value=4.1e+02 Score=26.90 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1218 ITEQLQSRKQQLHNLRKTVEKL 1239 (2174)
Q Consensus 1218 i~~~~~~l~~~~~~L~~~~~~~ 1239 (2174)
+..++..+..++..|...-..+
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l 97 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKL 97 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333433333333333333
No 110
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=24.72 E-value=4.5e+02 Score=36.32 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHh
Q psy4474 382 NLERLKNLEKELGRIGHKTVALK 404 (2174)
Q Consensus 382 ~l~~~~~l~~~l~~~~~~~~~l~ 404 (2174)
....+..|..+...+...+..+.
T Consensus 564 k~~~l~~L~~En~~L~~~l~~le 586 (722)
T PF05557_consen 564 KKSTLEALQAENEDLLARLRSLE 586 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556666666666666665554
No 111
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=24.65 E-value=1.6e+03 Score=28.81 Aligned_cols=55 Identities=11% Similarity=0.289 Sum_probs=31.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q psy4474 1018 DRLTVNDSVSSMQKRYAQLSRTIED--RISTVNNKL--QSVKRLQHKVEEAKALLQKAE 1072 (2174)
Q Consensus 1018 ~~~~i~~~~~~L~~rw~~L~~~~~~--R~~~Le~~l--~~~~~f~~~~~~~~~wl~~~e 1072 (2174)
.+..+...+..|..|.-.+.+.+.. |...++++- ...+.+...+..+..||...+
T Consensus 86 ~~~~~~n~m~~lD~rLvevre~L~~irr~q~~q~~erk~~~qe~~~rl~~L~~~Lrqee 144 (531)
T PF15450_consen 86 SSIQNQNQMQQLDKRLVEVREALTQIRRKQALQDSERKGSEQEAGLRLSKLQDMLRQEE 144 (531)
T ss_pred CCccchhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333466777777777777766665 444444431 223445566677777776654
No 112
>KOG0972|consensus
Probab=24.63 E-value=8.5e+02 Score=28.03 Aligned_cols=109 Identities=14% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhccc
Q psy4474 1579 LLQNIEAEINKVANAAQERKAMQDKISKLQSWLKQYIDYSGNKQALQSRLDKVNEIQESFPEISTKLQTLSDHIENSSRK 1658 (2174)
Q Consensus 1579 l~~~~~~r~~~L~~~~~~~~~f~~~~~~l~~wl~~~e~~~~d~~~~~~~l~k~~~~~~el~~~~~~~~~l~~~~~~l~~~ 1658 (2174)
+.....+++--+++...........+......|..+ |.+|...++.+.++=+.+......+++.
T Consensus 218 ~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldkl----------------h~eit~~LEkI~SREK~lNnqL~~l~q~ 281 (384)
T KOG0972|consen 218 LKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKL----------------HKEITKALEKIASREKSLNNQLASLMQK 281 (384)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHH
Q psy4474 1659 LPSRTNEAMYRDLANLRYDFEKCVSSLSDVKQGLESRLVQWNEYETSLGK 1708 (2174)
Q Consensus 1659 ~~~~~~~~i~~~l~~l~~~w~~L~~~~~~r~~~L~~~~~~~~~f~~~~~~ 1708 (2174)
. ......+.+++.+|+.....+..|-..|.+-.....+....+++
T Consensus 282 f-----r~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 282 F-----RRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred H-----HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
No 113
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=24.52 E-value=1.2e+03 Score=27.23 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhccccccCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1175 VQEKIDKYDKIIADIQEYEAILATASDKGDQLSSDGTISDRNEITEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESEKLG 1254 (2174)
Q Consensus 1175 ~~~~l~~~~~l~~el~~~~~~l~~~~~~~~~L~~~~~~~~~~~i~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~l~~f~ 1254 (2174)
+.-.+-+...+.+++. +.....-++++..+..-.....+.+..+..+++.+-......+..++..+..-+.+.
T Consensus 54 l~ll~~~~k~L~aE~~-------qwqk~~peii~~n~~VL~~lgkeelqkl~~eLe~vLs~~q~KnekLke~LerEq~wL 126 (268)
T PF11802_consen 54 LSLLMMRVKCLTAELE-------QWQKRTPEIIPLNPEVLLTLGKEELQKLISELEMVLSTVQSKNEKLKEDLEREQQWL 126 (268)
T ss_pred HHHHHHHHHHHHHHHH-------HHHhcCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555544 444444455543211111112233444444444444444444455555544444455
Q ss_pred HHHHHHHHHHHh
Q psy4474 1255 AELEEIIEALHA 1266 (2174)
Q Consensus 1255 ~~~~~~~~wl~~ 1266 (2174)
.+...+..-+..
T Consensus 127 ~Eqqql~~sL~~ 138 (268)
T PF11802_consen 127 DEQQQLLESLNK 138 (268)
T ss_pred HHHHHHHHHHHH
Confidence 544444444433
No 114
>KOG0996|consensus
Probab=23.98 E-value=2.3e+03 Score=30.48 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=30.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 493 LLQEVISHNSDMETLNDKCEALMELA--AHSPIREETLRLQALYAALVTSVQGLVSQVE 549 (2174)
Q Consensus 493 l~~ei~~~~~~l~~l~~~~~~L~~~~--~~~~i~~~~~~l~~~w~~L~~~~~~r~~~Le 549 (2174)
++.+|.........+........... ....++..+..+...|..+...+..-...+.
T Consensus 445 ~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~ 503 (1293)
T KOG0996|consen 445 CQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELD 503 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554444444444444333322 1244666777777777777666555554444
No 115
>KOG1937|consensus
Probab=23.14 E-value=1.5e+03 Score=28.13 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHH
Q psy4474 1668 YRDLANLRYDFEKCVSSLSDVKQGLES 1694 (2174)
Q Consensus 1668 ~~~l~~l~~~w~~L~~~~~~r~~~L~~ 1694 (2174)
..++..+...|++.......+...|..
T Consensus 306 ~~~~~~ltqqwed~R~pll~kkl~Lr~ 332 (521)
T KOG1937|consen 306 NKQMEELTQQWEDTRQPLLQKKLQLRE 332 (521)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344555555555555444444444433
No 116
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=22.44 E-value=2.1e+03 Score=29.53 Aligned_cols=225 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred CccchHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1405 GEQQTTKDKADKIKQITKSLPEGQKLIDKTVALKNNVLESTGPIGKENINQEINQITLDWTNLQNTLQDIDKHHAKCLSL 1484 (2174)
Q Consensus 1405 ~d~~~v~~~l~~~~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~~i~~~l~~L~~~W~~L~~~~~~r~~~Le~~~~~ 1484 (2174)
...+.+..+-.+.+.++.||...+..=+.+......|.. ....++..+..+...-+.|...+..-....+.=...
T Consensus 415 ~~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~-----~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~ 489 (697)
T PF09726_consen 415 SEPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTN-----NERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQS 489 (697)
T ss_pred cChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCchHhHHHHHHHHHhhhhhhchhhHHHHHhhhhhhhhhcccCChHHHHH
Q psy4474 1485 WNDFLSSKNTLEKWIEGFQKKIESEKDIGDCTNLDDLEKYKALLQEGLHKEADNKKVLIDSFNKGIIGMTELESEEVKDL 1564 (2174)
Q Consensus 1485 ~~~f~~~~~~l~~WL~~~e~~L~~~~~~~~~~~~~~l~k~~~l~~ei~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 1564 (2174)
+......+.+...==...|..|.. -++.+...++-.+ .............++.
T Consensus 490 l~~LEkrL~eE~~~R~~lEkQL~e------------Erk~r~~ee~~aa---------------r~~~~~~~~r~e~~e~ 542 (697)
T PF09726_consen 490 LQQLEKRLAEERRQRASLEKQLQE------------ERKARKEEEEKAA---------------RALAQAQATRQECAES 542 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHhHHHHhhh---------------hccccchhccchhHHH
Q ss_pred HHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhh---------------cCCHH
Q psy4474 1565 IQVGVHGLQVELNALLQNI---EAEINKVANAAQERKAM----QDKISKLQSWLKQYIDY---------------SGNKQ 1622 (2174)
Q Consensus 1565 i~~~~~~l~~rw~~l~~~~---~~r~~~L~~~~~~~~~f----~~~~~~l~~wl~~~e~~---------------~~d~~ 1622 (2174)
.+.+..+|......|...+ +++...++.....++.| ..+.+.|..+|..+.+. ..=..
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfs 622 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFS 622 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHhhcccCCC
Q psy4474 1623 ALQSRLDKVNEIQESFPEISTKLQTLSDHIENSSRKLPS 1661 (2174)
Q Consensus 1623 ~~~~~l~k~~~~~~el~~~~~~~~~l~~~~~~l~~~~~~ 1661 (2174)
.+..--.+++.+...+-.....|..|......++...|.
T Consensus 623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~ 661 (697)
T PF09726_consen 623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPS 661 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
No 117
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=22.37 E-value=3.1e+02 Score=26.83 Aligned_cols=104 Identities=11% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccccCCCcccHhHHHHHHHHHHHHHH
Q psy4474 1151 IMQIVGFITETTARVGEVDGNSATVQEKIDKYDKIIADIQEYEAILATASDKGDQLSSDGTISDRNEITEQLQSRKQQLH 1230 (2174)
Q Consensus 1151 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~el~~~~~~l~~~~~~~~~L~~~~~~~~~~~i~~~~~~l~~~~~ 1230 (2174)
+..+..-+..+...+..+......+...+..|.....+|....+.-.-....|.-++....+...+.+..++..+.....
T Consensus 1 ~q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~ 80 (105)
T cd00632 1 VQEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIK 80 (105)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1231 NLRKTVEKLRQQNEKRAAESEKLG 1254 (2174)
Q Consensus 1231 ~L~~~~~~~~~~~~~~~~~l~~f~ 1254 (2174)
.+......+...+.+....+....
T Consensus 81 ~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 81 RLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
No 118
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.34 E-value=2.1e+03 Score=29.60 Aligned_cols=78 Identities=22% Similarity=0.408 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhhhccHHHHHHHHHHHHHHHHHHH
Q psy4474 1220 EQLQSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVPSSSRLHNLRKTVEKLRQQNEKRAAESE 1299 (2174)
Q Consensus 1220 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~l~~f~~~~~~~~~wl~~~~~~l~~~~~~~~~~~~~e~l~~~~~~~~~~~~ 1299 (2174)
..+..++++.+.|......+.++++.....-..+..+++.+..-+......++.++ .....+++.+...+..+...++
T Consensus 579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AE--r~~~~EL~~~~~~l~~l~~si~ 656 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAE--REFKKELERMKDQLQDLKASIE 656 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666677778877777765444443222 2333445555555444444333
No 119
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.63 E-value=5.1e+02 Score=26.33 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=8.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHH
Q psy4474 1123 DEVVERIENHAVPKLKSLLLLRE 1145 (2174)
Q Consensus 1123 ~~~~~~~~~~~~~~L~~~~~~~~ 1145 (2174)
++.+...-.++..+++.+-...+
T Consensus 56 s~~l~~tKkhLsqRId~vd~klD 78 (126)
T PF07889_consen 56 SESLSSTKKHLSQRIDRVDDKLD 78 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHH
Confidence 33333333333344443333333
No 120
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.29 E-value=7.4e+02 Score=25.82 Aligned_cols=62 Identities=13% Similarity=0.211 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhccccccCCCcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4474 1177 EKIDKYDKIIADIQEYEAILATASDKGDQLSSDGTISDRNEITEQLQSRKQQLHNLRKTVEKLRQQN 1243 (2174)
Q Consensus 1177 ~~l~~~~~l~~el~~~~~~l~~~~~~~~~L~~~~~~~~~~~i~~~~~~l~~~~~~L~~~~~~~~~~~ 1243 (2174)
...+-++.|.++.......+-+.....+.|.....|.. .++..+..+..+|...+.+.+-..
T Consensus 51 ~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~-----~kI~aL~kEI~~Lr~kL~e~r~~~ 112 (143)
T PRK11546 51 AWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDS-----SKINAVAKEMENLRQSLDELRVKR 112 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444577777777777777777777777776655533 456777777777777766654433
No 121
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=21.18 E-value=2.8e+03 Score=30.59 Aligned_cols=11 Identities=9% Similarity=0.132 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q psy4474 1144 REQFTTLIMQI 1154 (2174)
Q Consensus 1144 ~~~f~~~~~~l 1154 (2174)
...|...+..+
T Consensus 1038 ~~~f~~~F~~l 1048 (1179)
T TIGR02168 1038 FDQVNENFQRV 1048 (1179)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 122
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=20.59 E-value=5.4e+02 Score=23.41 Aligned_cols=54 Identities=7% Similarity=0.218 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhhhHHhHhhhhhhhccChhchhhHHHHHHHHHHHHHHHHHHHHH
Q psy4474 989 AQLNEEAGELNMMISNVSIATEHMNLNDADRLTVNDSVSSMQKRYAQLSRTIED 1042 (2174)
Q Consensus 989 ~~l~~ei~~~~~~v~~l~~~~~~L~~~~~~~~~i~~~~~~L~~rw~~L~~~~~~ 1042 (2174)
-.+..+|.+....+..+......+..+.++...+..+++.+..+-..|...+.+
T Consensus 7 l~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~ 60 (75)
T PF05531_consen 7 LVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNE 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777776666666666666666777776666666666554433
No 123
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=20.32 E-value=1e+03 Score=27.95 Aligned_cols=30 Identities=7% Similarity=0.070 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Q psy4474 1174 TVQEKIDKYDKIIADIQEYEAILATASDKG 1203 (2174)
Q Consensus 1174 ~~~~~l~~~~~l~~el~~~~~~l~~~~~~~ 1203 (2174)
.+...++..-.....|...+..|..+-..+
T Consensus 74 dL~~~l~~~~~~s~tL~~~~~~L~~lL~~~ 103 (267)
T PF11887_consen 74 DLLDALDNLTTTSRTLVDQRQQLDALLLSA 103 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333344444444444444444444444333
Done!