RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4474
(2174 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 101 bits (251), Expect = 2e-21
Identities = 101/630 (16%), Positives = 207/630 (32%), Gaps = 131/630 (20%)
Query: 440 IDKHHAKCLSIWNDFLSS-KNTLE-KWIEGFQKKIEAEKDIGDCTNL-DDLEKYKALLQE 496
+H + I + F + + + K ++ K I ++++I D + L
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 497 VISHNSDM------ETLNDKCEALMELAAHSPIREETLRLQALYAALVTSVQGLVSQVEK 550
++S +M E L + LM PI+ E + + + L + +
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMS-----PIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 551 NLSDQTEFLAKKEEVEAWLHKAHA----TVQECAGNGSKNVL----------KERLDT-- 594
L ++ L + + G+G K + + ++D
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-KTWVALDVCLSYKVQCKMDFKI 184
Query: 595 --VNMVAERIPEGQHLMSVLQDTFTKALDTTPSDQQDSLREAMTVLRDSWDRLNRDLKST 652
+N+ PE ++ +LQ + +D + + D + L R LKS
Sbjct: 185 FWLNLKNCNSPET--VLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 653 STQLKSYIARWNELDDLYNR-----FNM---------------WLSGVENK---LNEPSP 689
+ + L ++ N FN+ +LS L+ S
Sbjct: 242 PYE-NCLLV----LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 690 VFTE---IDLNTKWQQYVNDELEWENHSQNTLQWLDNI---RSDMKTLLERSKHIVDD-- 741
T L K+ +L E + N + L I D + KH+ D
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-LSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 742 ---IEKKKDDLKP--IQKEAQQLS--EWDSSIVPKVSDLETRWAAVKSAWDAKHSDLSSE 794
IE + L+P +K +LS + I + L W V + + ++
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--LSLIWFDVIKSDV---MVVVNK 410
Query: 795 IAQYSSYQNAVQDAEKWLLQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDYSSYQNAV 854
+ +YS EK + + + S+Y+ + + + H ++ Y+ +
Sbjct: 411 LHKYSL-------VEKQPKESTISI--P-SIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 855 QDAE--KWLLQISFQLMAHNSLYINNRQQTLEQIQHHEK--LLQDVILS---PDNKL-AP 906
D +L Q + + H+ L+ I+H E+ L + V L + K+
Sbjct: 461 SDDLIPPYLDQYFYSHIGHH----------LKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 907 CFSAEEGSPIKDKIDRLEKETKAQSDRIQDALKTLNQLIGHRKEFEVDVENVEAKLKELE 966
+ I + + +L+ I D +L+ +F + +E L
Sbjct: 511 STAWNASGSILNTLQQLKF----YKPYICDNDPKYERLVNAILDF---LPKIEENL---- 559
Query: 967 VAVEGDVKTNNVLMLQ-ELLNKYAQLNEEA 995
+ + +L+ L+ + + EEA
Sbjct: 560 ------ICSKYTDLLRIALMAEDEAIFEEA 583
Score = 88.0 bits (217), Expect = 3e-17
Identities = 104/673 (15%), Positives = 204/673 (30%), Gaps = 215/673 (31%)
Query: 1303 AELEEIIEALHARETAVKTLPVLLLEVTSVDVELDKQRLELATKEVQPYVQRYETLKKNI 1362
E++ II + + L LL KQ + VQ +V+ E L+ N
Sbjct: 49 EEIDHIIMSKD-AVSGTLRLFWTLL---------SKQ-----EEMVQKFVE--EVLRINY 91
Query: 1363 AEAIDKFETQANEHEAYKQAYNEAYDWLRKAKLGAQANADCHGEQQTTKD---KADKIKQ 1419
+ +T+ + + Y E D L + Q K + +
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRL------------YNDNQVFAKYNVSRLQPYLK 139
Query: 1420 ITKSLPE----------GQKLIDKTV----ALKNNVLESTGP-------IGKENINQEIN 1458
+ ++L E G KT + ++ + N + +
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 1459 QITLDWTNLQNTLQDIDK-HHAKCLSLWNDFLSSKNTLEKWIEGFQKKIESEKDIGDC-T 1516
++ LQ L ID ++ N L ++++ + K K +C
Sbjct: 200 EM------LQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLK----SKPYENCLL 248
Query: 1517 NLDDLEKYKALLQEGLHKEA-DNK-KVLIDSFNKGII------------------GMTEL 1556
L +++ KA A + K+L+ + K + +T
Sbjct: 249 VLLNVQNAKAW-------NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 1557 ESEEV-KDLIQVGVHGLQVE---LNALLQNIEAEINKVANAAQERKAMQDKISKLQSWLK 1612
E + + + L E N +I AE +++D ++ +W
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE------------SIRDGLATWDNW-- 347
Query: 1613 QYIDYSGNKQALQSRLDKVNEIQESFPEISTKLQTLSDHIENSSRKLPSRTNEAMYRDLA 1672
++++ DK+ I IE+S L M+ L+
Sbjct: 348 KHVNC-----------DKLTTI-----------------IESSLNVLEPAEYRKMFDRLS 379
Query: 1673 NLRYDFEKCVSSLSDVKQGLESRLVQWNEYETSLGKLITWLNDTENVLKNFTLQPTLNEK 1732
+ + L S + W + +D V+ + +L EK
Sbjct: 380 VFPPS--------AHIPTILLSLI--WFDVIK---------SDVMVVVNKL-HKYSLVEK 419
Query: 1733 KQ----------QRELKGKLSSWCGYEESV-ATLLDWLKVTEKKLGDEMELKTTLDE--- 1778
+ ELK KL + E ++ +++D + + D++ + LD+
Sbjct: 420 QPKESTISIPSIYLELKVKLEN----EYALHRSIVDHYNIPKTFDSDDL-IPPYLDQYFY 474
Query: 1779 -------KKAQL----QVYRTIYQDATSHQQDLLQLKDKIESLHQPSEQSKQQLATITTR 1827
K + ++R ++ D L+ KI S L T+
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVF-------LDFRFLEQKIRHDSTAWNASGSILNTLQQ- 526
Query: 1828 HGNVLKRAQKKIEAEKDIGDCTNLDDLEKY-KALLQEVISHNSDMETLNDKCEALMELA- 1885
LK + I C N E+ A+L + ++ + K L+ +A
Sbjct: 527 ----LKFYKPYI--------CDNDPKYERLVNAILDFLPKIEENL--ICSKYTDLLRIAL 572
Query: 1886 --AHSPIREETLR 1896
I EE +
Sbjct: 573 MAEDEAIFEEAHK 585
Score = 87.6 bits (216), Expect = 4e-17
Identities = 102/657 (15%), Positives = 217/657 (33%), Gaps = 193/657 (29%)
Query: 3 RYQ-LLHVMSKEVINRWQGLVYDPKPIVDFRYQLLHVMSKEVINRWQGLVYDHKLYNDVY 61
+Y+ +L V ++ +D K + D ++SKE I DH
Sbjct: 17 QYKDILSVFEDAFVDN-----FDCKDVQDM---PKSILSKEEI--------DH------I 54
Query: 62 VKTDDWLTGLEKDLDTLKNT---------TDVEAKNS--LLQKLLTE-KDQAGHKLTYLT 109
+ + D ++G + TL + +V N L+ + TE + + Y+
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI- 113
Query: 110 SSGEKLYLDTA--AKGREVVRQQ--------LRALRDSK---------CSKTTL-QEVLS 149
++LY D AK V R Q L LR +K KT + +V
Sbjct: 114 EQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 150 HKRIIESLLDKSK--SLPQINKDQA----LEKAIVSVNKRYEDLVDGILKTISQLEESLD 203
++ + K +L N + L+K + ++ + D ++
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 204 IFQQFQQLQKAYQE-----D----------------------QKQLWDKLSSLTERELKG 236
++ + K Y+ KQ+ D LS+ T +
Sbjct: 233 ELRRLLK-SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 237 KLSSWCGY--EESVATLLDWLKVTEKKLGDEME---------LKTTLDEKKAQLQVYRTI 285
S +E + LL +L + L E+ + ++ + A ++ +
Sbjct: 292 DHHSM-TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 286 YQDATSHQQDLLQLKDKIESLHQPSEQSK--QQLA------TITTRHGNVLKRAQKFTEA 337
D + ++ + L +P+E K +L+ I T +L
Sbjct: 351 NCDKLTT-----IIESSLNVL-EPAEYRKMFDRLSVFPPSAHIPT---ILLSLIWFDVIK 401
Query: 338 YEGIVSIHQAYTKAVLDTQEWIDATYNAVNMWGDLTLERVSLHSNLERLKNLEKELGRIG 397
+ +V +++ + ++++ ++ ++T S+ S LK + +
Sbjct: 402 SDVMVVVNKLHKYSLVE-KQPKESTI--------------SIPSIYLELKVKLENEYAL- 445
Query: 398 HKTVALKNNVLESTGPIGKENINQEINQITLDWTNLQNTLQVIDK-------HHAKCL-- 448
H+++ + NI + T D +L +D+ HH K +
Sbjct: 446 HRSI------------VDHYNIPK-----TFDSDDL--IPPYLDQYFYSHIGHHLKNIEH 486
Query: 449 --------SIWNDFLSSKNTLEKWIEGFQKKIE----AEKDIGDCTN-LDDLEKYKALLQ 495
++ DF +++ ++KI A G N L L+ YK +
Sbjct: 487 PERMTLFRMVFLDF--------RFL---EQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 496 EVISHNSDMETLNDKCEALMELAAHSPIREETLRLQALYAALVTSVQGLVSQVEKNL 552
+ + +N + L ++ + + T L+ AL+ + + + K +
Sbjct: 536 D--NDPKYERLVNAILDFLPKIEENLICSKYTDLLR---IALMAEDEAIFEEAHKQV 587
Score = 83.0 bits (204), Expect = 1e-15
Identities = 114/711 (16%), Positives = 203/711 (28%), Gaps = 220/711 (30%)
Query: 1523 KYKALL---QEGLHKEADNKKVLIDSFNKGIIGMTELESEEVKDLIQVGVHGLQVELNAL 1579
+YK +L ++ D K V K I L EE+ +I L
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQ--DMPKSI-----LSKEEIDHIIMSKDAVSGTLR--L 67
Query: 1580 LQNIEAEINKVANAAQERKAMQDKISKLQSWL-----KQYIDYSGNKQALQSRLDKVNEI 1634
+ +K Q K +++ + +L + S + + D++
Sbjct: 68 FWTLL---SKQEEMVQ--KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 1635 QESFPEISTKLQTLSDHIENSSRKLPSRTNEAMYRDLANLRYDFEKCVSSLSDVK----Q 1690
+ F + N SR + LR + + L K
Sbjct: 123 NQVFAKY------------NVSRL----------QPYLKLR----QALLELRPAKNVLID 156
Query: 1691 GLESRLVQWNEYETSLGKLITWLNDTENVLKNFTLQPTLNEK------KQQRELKGKLSS 1744
G+ GK TW+ +V ++ +Q ++ K K + L
Sbjct: 157 GV-----------LGSGK--TWV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-- 199
Query: 1745 WCGYEESVATLLDWLKVTEKKLGDEME-LKTTLDEKKAQLQVYRTIYQDATSHQQDLLQL 1803
E + LL + D +K + +A+L R + + ++ LL L
Sbjct: 200 -----EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL---RRLLKSK-PYENCLLVL 250
Query: 1804 KDKIESLHQPSEQSKQQLAT--------ITTRHGNVLKRAQKKIEAEKDIGDCTNLDDLE 1855
+ Q+ + +TTR D L
Sbjct: 251 LNV---------QNAKAWNAFNLSCKILLTTR-------------------FKQVTDFL- 281
Query: 1856 KYKALLQEVISHNSDMETLNDKCEALMELAAHSPIREETLRLQALYAA-LVTSVQGLVSQ 1914
A IS + TL E L + R + L + L S+ +
Sbjct: 282 --SAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 1915 VEKNLSDQTEFLAKKEEVEAWLHKAHATVQECDELEAGIK---EEQKNIETQ--YLQWNS 1969
D W H CD+L I+ + E + + + +
Sbjct: 339 DGLATWDN------------WKH------VNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 1970 FRE-------TLAQMTAWLDSVEKNIKQEIATPWTTTQELRSKLLKLK------------ 2010
F L+ + W D ++ ++ + +L L K
Sbjct: 381 FPPSAHIPTILLSLI--WFDVIKSDV-MVVV------NKLHKYSLVEKQPKESTISIPSI 431
Query: 2011 --EILKKCEKGVGDHEAFVDKYE-----ECSQKLAQVEAKY--------AKLIEPETSYE 2055
E+ K E H + VD Y + + +Y K IE
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 2056 ELQKR-------QGQLTALLTEKVDMDVLLNACVDLCDKVYESTSEPGHEPLRVQMEKLQ 2108
+ + ++ T +LN L K Y+ ++P ++
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL--KFYKPYICD-NDPKYERL---- 544
Query: 2109 QAVEALYDKI-TVTESLILSQVEAKYAKLI------EPETSYEELQKRQGQ 2152
V A+ D + + E+LI S KY L+ E E +EE +Q Q
Sbjct: 545 --VNAILDFLPKIEENLICS----KYTDLLRIALMAEDEAIFEE-AHKQVQ 588
Score = 74.9 bits (183), Expect = 3e-13
Identities = 108/655 (16%), Positives = 204/655 (31%), Gaps = 151/655 (23%)
Query: 1085 DISEALTVYQKLLDEINSWKNSQSDEDLVHLADSIKPL--DEVVERIENHAVPKLKSLLL 1142
+ E Y+ +L + D + D K + E ++ I +L L
Sbjct: 10 ETGEHQYQYKDILSVFE--DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 1143 LREQFTTLIMQIVGFITETTAR-VGEVDGNSATVQEKIDKYDKIIADIQEYEAILATASD 1201
F TL+ + E + V EV +I+ Y +++ I+
Sbjct: 68 ----FWTLLSKQ----EEMVQKFVEEVL--------RIN-YKFLMSPIKT--------EQ 102
Query: 1202 KGDQLSSDGTISDRNEITEQLQ-------SRKQQLHNLRKTVEKLRQQNE---------- 1244
+ + + I R+ + Q SR Q LR+ + +LR
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 1245 K-----RAAESEKLGAELEEIIEALHARETAVPSSSRLHNLRKTVEKLRQQNEKRAAESE 1299
K S K+ +++ I L+ + P + L L+K + ++ R+ S
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP-ETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 1300 KLGAELEEIIEALHARETAVKTLPVLLLEVTSV--DVELDKQRLE--------LATKEVQ 1349
+ + I L R K LL V +V+ + + L T
Sbjct: 222 NIKLRIHSIQAELR-RLLKSKPYENCLL----VLLNVQ-NAKAWNAFNLSCKILLT---- 271
Query: 1350 PYVQRYETLKKNIAEAIDKFETQANEHEAYKQAYNEAY------DWL--RKAKLGAQANA 1401
T K + + + T + + +L R L +
Sbjct: 272 -------TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-- 322
Query: 1402 DCHGEQQTTKDKADKIKQITKSLPEGQKLIDKTVALKNNVLESTGPIGKENINQEINQIT 1461
+ + I +S+ +G D + + L + I +N
Sbjct: 323 -LTTNPRR-------LSIIAESIRDGLATWDNWKHVNCDKLTTI-------IESSLNV-- 365
Query: 1462 LDWTNLQNTLQDI-----DKH-HAKCLS-LWNDFLSSKNTLEKWIEGFQKKIESEKDIGD 1514
L+ + + H LS +W D K+ + + K EK +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD--VIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 1515 CT----NLDDLEKYKALLQEGLHK---EADNKKVLIDSFNKGI----------IG--MTE 1555
T ++ K K + LH+ + N DS + IG +
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 1556 LESEEVKDLIQVGVHGLQVELNALLQNIEAEINKVANAAQERKAMQDKISKLQSWLKQYI 1615
+E E L + V L+ + +E +I + A ++ + + + LK Y
Sbjct: 484 IEHPERMTLFR------MVFLD--FRFLEQKIRHDSTAWNASGSILNTLQQ----LKFYK 531
Query: 1616 DYSGNKQALQSRLDKVNEIQESFPEISTKLQTLSDHIENSSRKLPSRTNEAMYRD 1670
Y + RL VN I + P+I L S + + L +EA++ +
Sbjct: 532 PYICDNDPKYERL--VNAILDFLPKIEENL-ICSKYTDLLRIAL-MAEDEAIFEE 582
Score = 62.2 bits (150), Expect = 2e-09
Identities = 96/675 (14%), Positives = 193/675 (28%), Gaps = 195/675 (28%)
Query: 822 HNSLYINNRQQTLEQIQHH--EKLLQDYSSYQNAVQDAEKWLLQISFQLMAHNSLYINNR 879
H Q + I + + ++ VQD K +L S + + H I
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKD--VQDMPKSIL--SKEEIDH----IIMS 57
Query: 880 QQTLEQIQHHEKLLQDVILSPDNKLAPCFSAEEGSPIKDKI-DRLEKETKAQSDRIQDAL 938
+ + L +LS ++ F E + ++ E + S + +
Sbjct: 58 KDAVSGT----LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 939 KTLNQLIGHRKEF-------EVDVENVEAKLKELE----VAVEGDV---KTNNVLMLQEL 984
+ ++L + F + L EL V ++G + KT + L
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT--WVALDVC 171
Query: 985 LN--------------KYAQLNEEAGELNMM-------ISNVSIATEHMNLNDADRLTVN 1023
L+ N L M+ N + ++H +L ++
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS---SNIKLRIH 228
Query: 1024 DSVSS-----MQKRYAQ-L--------SRTIED-----------RISTVNNKLQSVKRLQ 1058
+ K Y L ++ R V + L +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 1059 HKVEEAKALLQKAESQ--LARPVSTQAEDI-SEALTVY--------QKLLDEINSWKNSQ 1107
++ L E + L + + + +D+ E LT + + D + +W N +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 1108 SDEDLVHLADSIKPLDEVVERIENHAVPKLKSLLLLREQFTTLIMQIVGF-----ITETT 1162
H+ + L ++E N P R+ F L + F I
Sbjct: 349 ------HV--NCDKLTTIIESSLNVLEPA-----EYRKMFDRLSV----FPPSAHIPTIL 391
Query: 1163 ARVGEVDGNSATVQEKIDK-YDKIIADIQEYEAILATASDKGDQLSSDGTISDRNEITEQ 1221
+ D + V ++K + + + Q E+ + +I +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI--------------SIPSIYLELKV 437
Query: 1222 LQSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEE----------IIEALHARETAV 1271
+ LH R V+ N + +S+ L + + H +
Sbjct: 438 KLENEYALH--RSIVDHY---NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 1272 PSSSRLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVKTLPVLLLEVTS 1331
L + R +K+R + A +A + + TL
Sbjct: 493 FRMVFL-DFRFLEQKIRHDS------------------TAWNASGSILNTL--------- 524
Query: 1332 VDVELDKQRLELATKEVQPYVQRYETLKKNIAEAIDKFETQ--------------ANEHE 1377
Q+L+ + +YE L I + + K E E E
Sbjct: 525 -------QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Query: 1378 AYKQAYNEAYDWLRK 1392
A + EA+ +++
Sbjct: 578 AI---FEEAHKQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 80.9 bits (199), Expect = 4e-15
Identities = 107/646 (16%), Positives = 182/646 (28%), Gaps = 214/646 (33%)
Query: 630 SLREAMTV----LRDSWDRLNRDLKSTSTQLKSYIARWNELDDLYNRFNMWLSGVENKL- 684
S R +T+ L T + L +FN L
Sbjct: 5 STR-PLTLSHGSLEHVL--------LVPTAS------FFIASQLQEQFNKILPEPTEGFA 49
Query: 685 --NEPSPVFTEIDLNTKWQQYVNDELEWENHSQNTLQWLDNIRSDMKTLLERSKHIVDDI 742
+EP+ T +L K+ YV+ +E Q D + + L +
Sbjct: 50 ADDEPT---TPAELVGKFLGYVSSLVEPSKVGQ-----FDQV---LNLCL---TEFENCY 95
Query: 743 EKKKDDLKPIQKEAQQLSEWDSSIVPKVSDLETRWAAVKSAWDAKH-SDLSSEIAQYSSY 801
+ D I A +L + + + + K +L +K+ A+ + + S+
Sbjct: 96 LEGND----IHALAAKLLQENDTTLVKTKEL------IKNYITARIMAKRPFDKKSNSAL 145
Query: 802 QNAVQDAEKWLLQISF--QLMAHNSLYINNRQQTLEQIQHHEKLLQD-YSSYQNAVQD-- 856
AV + L+ I F Q N E E L+D Y +Y V D
Sbjct: 146 FRAVGEGNAQLVAI-FGGQ---------GNTDDYFE-----E--LRDLYQTYHVLVGDLI 188
Query: 857 --AEKWLLQISFQLMAHNSLY---------INNRQQT-----------------LEQIQH 888
+ + L ++ + ++ + N T + Q+ H
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 889 HEKLLQDVILSPDNKLAPCFSAEEG--------SPIKDKIDRLEKETKAQSDRIQD---- 936
+ + + +P L G I A++D +
Sbjct: 249 YVVTAKLLGFTPGE-LRSYLKGATGHSQGLVTAVAI------------AETDSWESFFVS 295
Query: 937 ALKTLNQL--IGHRKEFEVDVENVEAKLKELEVAVEGDVKTNNVLML------QELLNKY 988
K + L IG R ++ + E + V + ML QE + Y
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS---PMLSISNLTQEQVQDY 352
Query: 989 -AQLNEEAGELNMMISNVSIATEHMNLNDADRLTVNDSVSSMQKRYAQLSRTIEDRISTV 1047
+ N V I+ +N A L V+ S+ Y +
Sbjct: 353 VNKTNSHLPA----GKQVEIS----LVNGAKNLVVSGPPQSL---YG------------L 389
Query: 1048 NNKLQSVKRL----QHKVE--EAKA----------------LLQKAESQL-----ARPVS 1080
N L+ K Q ++ E K LL A + VS
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 1081 TQAEDISEALTVYQKLLDEINSWKNSQS-DEDLVH-LADSI--KPLD--EVVERIENHAV 1134
A+DI + VY + + + + D I P+ + H +
Sbjct: 450 FNAKDI--QIPVYD-----TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
Query: 1135 ---PKLKSLLLLREQFTTLIMQIV-GFITETTARV---GEVDGNSA 1173
P S L L + G T RV G +D N
Sbjct: 503 DFGPGGASGL------GVLTHRNKDG----TGVRVIVAGTLDINPD 538
Score = 67.0 bits (163), Expect = 7e-11
Identities = 67/477 (14%), Positives = 125/477 (26%), Gaps = 179/477 (37%)
Query: 452 NDFLSSKNTLEKWIEGFQKKIEAEKDIGDCTNLDDLEKY---KALLQEVIS--HNSDMET 506
N +L + I K+ E D + ++ Y + + + NS
Sbjct: 93 NCYLEGND-----IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS---- 143
Query: 507 LNDKCEALMELAAHSPIR-----------EETLR-LQALY-------AALVTSVQGLVSQ 547
AL + ++ L+ LY L+ +S+
Sbjct: 144 ------ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 548 VEKNLSDQTEFLAKKEEVEAWLHKAHATVQECAGNGSKNVLKERLDTVNMVAERIPEGQH 607
+ + D + + + WL P+ +
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLEN---------------------------PSNTPDKDY 230
Query: 608 LMS---------VLQ----DTFTKALDTTPSDQQDSLREAMTVLR-----------DSWD 643
L+S V+Q K L TP + + L+ A + DSW+
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 644 RLNRDLKSTSTQLKSYI-ARWNELDDLYNRFNMWLSGV----ENKLNEPSPVFTEIDLN- 697
++ T L +I R E Y ++ S + EN PSP+ + +L
Sbjct: 291 SFFVSVRKAITVL-FFIGVRCYE---AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 698 ---TKWQQYVNDELEWENHSQ----NT------------LQWLD-NIR------------ 725
+ N L + N L L+ +R
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 726 ---SDMK----------------TLLERSKHIV------DDIEKKKDDLK-PI--QKEAQ 757
S+ K LL + ++ +++ D++ P+ +
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 758 QLSEWDSSIVPKVSDLETR----W-AAVKSAWDAKH------------SDLSSEIAQ 797
L SI ++ D R W + A H L+
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQF--KATHILDFGPGGASGLGVLTHRNKD 521
Score = 65.8 bits (160), Expect = 2e-10
Identities = 89/548 (16%), Positives = 154/548 (28%), Gaps = 203/548 (37%)
Query: 1527 LLQEGLHKEADNKKVLIDSFNKGIIGMTE-LESEE---------------VKDLIQVGVH 1570
L+ A L + FNK + TE +++ V L++
Sbjct: 21 LVPTASFFIAS---QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKV 77
Query: 1571 GLQVE-LNALLQNIEAEI---NKV-ANAAQERKAMQDKISKLQSWLKQYIDYSGN----- 1620
G + LN L E N + A AA+ + + K + +K Y +
Sbjct: 78 GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY--ITARIMAKR 135
Query: 1621 --KQALQSRL-DKVNE--------------IQESFPEISTKLQTL--------SDHIENS 1655
+ S L V E + F E L+ L D I+ S
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE----LRDLYQTYHVLVGDLIKFS 191
Query: 1656 SRKLPSRTNEAMYRDLANLRYDFEKCVSSLSDVKQGLESRLVQW---------NEY---- 1702
+ L +L D EK + QGL +++W +Y
Sbjct: 192 AETL---------SELIRTTLDAEKVFT------QGLN--ILEWLENPSNTPDKDYLLSI 234
Query: 1703 ETSLGKLI--TWLNDTENVLKNFTLQPTLNEKKQQRELKGKLS----------------- 1743
S LI L K P EL+ L
Sbjct: 235 PISC-PLIGVIQLAHYVVTAKLLGFTPG--------ELRSYLKGATGHSQGLVTAVAIAE 285
Query: 1744 --SWCGYEESVATLLDWL------------------KVTEKKL-GDE-----M------- 1770
SW + SV + L + E L +E M
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 1771 --ELKTTLDEKKAQLQVYRTIY------QDA---TSHQQDLLQLKDKIESLHQPS--EQS 1817
+++ +++ + L + + + Q L L + PS +QS
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 1818 K----QQLATITTR--------HGNVLKRAQKKIEAEKDIGDCTNLDDLEKYKAL----- 1860
+ ++ + R H ++L A I DL K
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI-----------NKDLVKNNVSFNAKD 454
Query: 1861 LQEVISH---NSDMETLNDKC-EALMELAAHSPIR-EETLRLQALYAALVT----SVQGL 1911
+Q + SD+ L+ E +++ P++ E T + +A + ++ GL
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH--ILDFGPGGASGL 512
Query: 1912 VSQVEKNL 1919
+N
Sbjct: 513 GVLTHRNK 520
Score = 58.5 bits (141), Expect = 3e-08
Identities = 83/629 (13%), Positives = 184/629 (29%), Gaps = 210/629 (33%)
Query: 62 VKTDDWLTGLE-KD--LDTLKNTTDVEAKNSLLQKLLTEKDQAGHKLTYLTSSGEKLYLD 118
V T + + ++ L T+ A + + T + G L Y++S E
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAAD---DEPTTPAELVGKFLGYVSSLVEP---S 75
Query: 119 TAAKGREVVRQQLRALRDSKCSKTTLQEVLSHKRI--IESLLDKSKSLPQINKDQALE-- 174
+ +V+ L L I + + L + + + ++
Sbjct: 76 KVGQFDQVLNLCLTEFE---------NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 175 -KAIVSVNKRYEDLVDGILKTISQLEESLDIFQQF--QQLQKAYQEDQKQLWDKLSSLTE 231
A + + ++ + L E + + F Q Y +++L
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVG-EGNAQLVAIFGGQGNTDDY-------FEEL----- 173
Query: 232 RELKGKLSSWCGYEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATS 291
R+L Y+ + D +K + + L + ++TTLD +K ++ +
Sbjct: 174 RDL---------YQTYHVLVGDLIKFSAETLSEL--IRTTLDAEK--------VF----T 210
Query: 292 HQQDLLQLKDKIESLHQPSEQSKQ----------------QLA--TITTR-----HGNVL 328
++L+ L PS + QLA +T + G +
Sbjct: 211 QGLNILEW------LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 329 KRAQKFTEAYEGIVSIHQAYTKAVLDT-QEWIDATYNAVNM--WGDLTLERVSLHSNLER 385
+ T +G+V+ A A D+ + + + A+ + +
Sbjct: 265 SYLKGATGHSQGLVT---AVAIAETDSWESFFVSVRKAITVLFF---------------- 305
Query: 386 LKNLEKELGRIGHKTVALKNNVLESTGPIGKENINQEINQITLDWTNLQNT----LQVID 441
IG + ++ I + +L+ N + L + +
Sbjct: 306 ----------IG----------VRCYEAYPNTSLPPSILEDSLE--NNEGVPSPMLSISN 343
Query: 442 KHHAKCLSIWNDFLSSKNTLEKWIEGFQKKIEAEKDIGDCTNLDDLEKYKALL----QEV 497
++ ++ ++ + A K + +L+ V
Sbjct: 344 --------------LTQEQVQDYVNKTNSHLPAGKQV-----------EISLVNGAKNLV 378
Query: 498 IS-HNSDMETLNDKCEALMELAAHS-------PIREETLRLQALYAALVTSV-------Q 542
+S + LN L + A S P E L+ + L +
Sbjct: 379 VSGPPQSLYGLN---LTLRKAKAPSGLDQSRIPFSERKLKFSNRF--LPVASPFHSHLLV 433
Query: 543 GLVSQVEKNLSDQTEFLAKKEEVEAWLHKA-HAT-----VQECAGNGSKNVLKERLDTVN 596
+ K+L K+ + + T ++ +G+ + ER+ V+
Sbjct: 434 PASDLINKDLVKNNVSFNAKD-----IQIPVYDTFDGSDLRVLSGS-----ISERI--VD 481
Query: 597 MVA-ERIPEGQHLMSVLQDTFTKALDTTP 624
+ + + Q T LD P
Sbjct: 482 CIIRLPV----KWETTTQFKATHILDFGP 506
Score = 57.0 bits (137), Expect = 9e-08
Identities = 62/429 (14%), Positives = 139/429 (32%), Gaps = 146/429 (34%)
Query: 1116 ADSIKPLDEVVERIENHA-------VPKLKSLLL----LREQFTT--------------- 1149
A S +PL +H VP + L+EQF
Sbjct: 3 AYSTRPL------TLSHGSLEHVLLVPT--ASFFIASQLQEQFNKILPEPTEGFAADDEP 54
Query: 1150 -----LIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKII-ADIQEYE-AILA----- 1197
L+ + +G+++ V+ K+ ++D+++ + E+E L
Sbjct: 55 TTPAELVGKFLGYVSS------LVE------PSKVGQFDQVLNLCLTEFENCYLEGNDIH 102
Query: 1198 --TASDKGDQLSSDGTISDRNEITEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESE--KL 1253
A + +D T+ E+ +++ ++ +K RA +L
Sbjct: 103 ALAAKLLQE---NDTTLVKTKEL---IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 1254 GAE----------LEEIIEALHARETAVPSSSRLHNLRKTVEKLRQQNEKRAAESEKLGA 1303
A EE+ + L+ +T + +L K + + + ++EK+
Sbjct: 157 VAIFGGQGNTDDYFEELRD-LY--QT---YHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 1304 ELEEIIEALHARETA----------VKTLPVLLL------EVTSVDVELDKQRLELATKE 1347
+ I+E L + + P++ + VT+ + L E
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPI-SCPLIGVIQLAHYVVTA-------KLLGFTPGE 262
Query: 1348 VQPYVQRYETLKKNI--AEAIDKFETQANEHEAYKQAYNEAYDWL-----------RKAK 1394
++ Y++ + + A AI + + E++ + +A L
Sbjct: 263 LRSYLKGATGHSQGLVTAVAI----AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 1395 LGAQANADC--HGEQQTT---------KDKADK-IKQITKSLPEGQKLIDKTVALKN--- 1439
L D + E + +++ + + LP G+++ ++L N
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV---EISLVNGAK 375
Query: 1440 -NVLESTGP 1447
V+ +GP
Sbjct: 376 NLVV--SGP 382
Score = 56.6 bits (136), Expect = 1e-07
Identities = 101/602 (16%), Positives = 195/602 (32%), Gaps = 206/602 (34%)
Query: 1271 VPSSSRLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVKTLPVLLLEVT 1330
VP++S +L+ E+ L E E A + E T
Sbjct: 22 VPTASFFI-----ASQLQ----------EQFNKILPEPTEGFAADD-----------EPT 55
Query: 1331 SVDVELDKQRLELATKEVQP--YVQRYETLKKNIAEAIDKFETQANEHEAYKQAYNEAYD 1388
+ EL + L + V+P Q + L + +FE
Sbjct: 56 TP-AELVGKFLGYVSSLVEPSKVGQFDQVLNL----CLTEFEN----------------C 94
Query: 1389 WLRKAKLGAQANADCH-------GEQQTTKDKADK-IKQITKSLPEGQKLIDKTV--ALK 1438
+L D H E TT K + IK + ++ DK AL
Sbjct: 95 YLE--------GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146
Query: 1439 NNVLESTGPI-----GKENIN---QEINQITLDWTNLQNTLQDIDKHHAKCLSLWNDFLS 1490
V E + G+ N + +E+ + + + D+ K A+ L ++ +
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDL---YQTYHVLVGDLIKFSAETL---SELIR 200
Query: 1491 SKNTLEKWIEGFQKKIESEKDIGDCTNLDDLEKYKALLQEGLHKEAD--NKKVLID---S 1545
+ EK F + + ++ ++ L ++ +K L+ S
Sbjct: 201 TTLDAEKV---FTQGL-------------NILEW-------LENPSNTPDKDYLLSIPIS 237
Query: 1546 FNKGIIGMTELESEEVKDLIQVGVHGLQV-ELNALLQNIEAEINKVANAAQERKAMQDKI 1604
+IG+ +L ++ + G EL + L+ + A A I
Sbjct: 238 CP--LIGVIQL----AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV----A----I 283
Query: 1605 SKLQSWLKQYIDYSGNKQALQ------SRLDKVNEIQESFPEISTKLQTLSDHIENSSRK 1658
++ SW + + + ++A+ R E++P S L D +EN +
Sbjct: 284 AETDSW-ESF--FVSVRKAITVLFFIGVR------CYEAYPNTSLPPSILEDSLEN-NEG 333
Query: 1659 LPSRTNEAMYRDLANLRYDFEKCVSSLSDVKQGLESRLVQWNEYETSLGKL-ITWLNDTE 1717
+PS M L+ +S+L+ + ++ + + N + + ++ I+ +N +
Sbjct: 334 VPS----PM---LS---------ISNLTQEQ--VQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 1718 NV--------LKNFTLQ-------PTLNEKKQ---QRELKGKL----------SSWCGYE 1749
N+ L L L++ + +R+LK S
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH----- 430
Query: 1750 ESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKI-E 1808
LL ++ D ++ + + K Q+ VY T D DL L I E
Sbjct: 431 -----LLV--PASDLINKDLVKNNVSFNAKDIQIPVYDT--FDG----SDLRVLSGSISE 477
Query: 1809 SL 1810
+
Sbjct: 478 RI 479
Score = 56.2 bits (135), Expect = 1e-07
Identities = 81/519 (15%), Positives = 166/519 (31%), Gaps = 164/519 (31%)
Query: 942 NQLIGHRKEFEVDVENVEAKLKELEVAVEGDVKTNNVLMLQELLNKY----AQLNE--EA 995
+QL +++F K L EG + EL+ K+ + L E +
Sbjct: 31 SQL---QEQF----------NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKV 77
Query: 996 GELNMMISNVSIATEHMNLNDADR--LTVND--SVSSMQKRYAQLSRTIEDRISTVNNKL 1051
G+ + +++ L + + L ND +++ A+L + + + +
Sbjct: 78 GQFDQVLNLC--------LTEFENCYLEGNDIHALA------AKLLQENDTTLVKTKELI 123
Query: 1052 QS-------VKRLQHKVEEAKALLQKAESQLARPVST---Q--AEDISEALTVYQKLLDE 1099
++ KR K + AL + A+ V+ Q +D Y +E
Sbjct: 124 KNYITARIMAKRPFDKKSNS-ALFRAVGEGNAQLVAIFGGQGNTDD-------Y---FEE 172
Query: 1100 INS-WKNSQSD-EDLVHL-ADSIKPLDEVVERIENHAVPKLKSLLLLREQFTT------- 1149
+ ++ DL+ A+++ L E L L L T
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 1150 -------LI--MQIVGFITETTARV-----GEVDGN--SATVQEKIDKYDKIIADIQEYE 1193
LI +Q+ ++ TA++ GE+ AT + ++
Sbjct: 233 SIPISCPLIGVIQLAHYVV--TAKLLGFTPGELRSYLKGATGHSQ-----GLVT------ 279
Query: 1194 AILATASDKGDQL--SSDGTISDRNEITEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESE 1251
A+ +D + S I + + R + + + + + +E
Sbjct: 280 AVAIAETDSWESFFVSVRKAI----TVLFFIGVRCYEAYPNTSLPPSILEDSL---ENNE 332
Query: 1252 KL--------GAELEEIIEALHARETAVPSSSR----LHN-------------LRKTVEK 1286
+ E++ + ++ + +P+ + L N L
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 1287 LRQQNEKRAAESEKLGAELEEIIEALHARETAVKT--LPV-------LLLEVTS-VDVEL 1336
LR K + ++ E R+ LPV LL+ + ++ +L
Sbjct: 393 LR--KAKAPSGLDQSRIPFSE-------RKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 1337 DKQRLELATKEVQ-PYVQRYET--------LKKNIAEAI 1366
K + K++Q P V Y+T L +I+E I
Sbjct: 444 VKNNVSFNAKDIQIP-V--YDTFDGSDLRVLSGSISERI 479
Score = 55.1 bits (132), Expect = 3e-07
Identities = 89/608 (14%), Positives = 163/608 (26%), Gaps = 245/608 (40%)
Query: 3 RYQLLHVMSKEVINRWQGLVYDPKPIVDFRYQLLHVMSKEVINRWQGLVYDHKLY---ND 59
++ L +V S +P + F Q+L++ L Y ND
Sbjct: 63 KF-LGYVSSLV----------EPSKVGQFD-QVLNLC----------LTEFENCYLEGND 100
Query: 60 V------YVKTDDWLTGLEKDLDTLKN----------TTDVEAKNSLLQKLLTEKDQA-- 101
+ ++ +D T L K + +KN D ++ ++L + + A
Sbjct: 101 IHALAAKLLQEND--TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA--VGEGNAQL 156
Query: 102 -------GHKLTYLTSSGE--KLY----------LDTAAKGREVVRQQLRAL-RDSKCSK 141
G+ Y E LY + +A + L L R + ++
Sbjct: 157 VAIFGGQGNTDDYFE---ELRDLYQTYHVLVGDLIKFSA-------ETLSELIRTTLDAE 206
Query: 142 TTLQEVLSHKRIIESLLDKSKSLPQINKDQALEKAIVSVNKRYEDLVDGILKTISQLEES 201
+ L+ I L+ + P L +S L + QL
Sbjct: 207 KVFTQGLN----ILEWLENPSNTP---DKDYLLSIPISCP----------LIGVIQL--- 246
Query: 202 LDIFQQFQQLQKAYQEDQKQLWDKLSSLTERELKGKLS--------SWCGYEESVATLLD 253
+ K +L L T +G ++ SW + SV +
Sbjct: 247 ----AHYVVTAKLLGFTPGELRSYLKGATGH-SQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 254 WL------------------KVTEKKL-GDE-----M---------ELKTTLDEKKAQLQ 280
L + E L +E M +++ +++ + L
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 281 VYRTIY------QDA---TSHQQDLLQLKDKIESLHQPS--EQSK----QQLATITTR-- 323
+ + + Q L L + PS +QS+ ++ + R
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 324 ------HGNVLKRAQKF--TEAYEGIVSIHQAYTK-AVLDTQEWIDATYNAVNMWGDLTL 374
H ++L A + + VS + + V DT + D
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD-------------- 467
Query: 375 ERVSLHSNLERLKNLEKELGRIGHKTVALKNNVLESTGPIGKENINQEINQITLDWTNLQ 434
L+ L + E I I ++ + W
Sbjct: 468 -----------LRVLSGSIS----------------------ERIVDCIIRLPVKWETTT 494
Query: 435 NTLQVIDKHHAKCLSIWNDF----------LSSKNTLEKWIEGFQKKIEAEKDIGDC-TN 483
H L DF L+ +N + I A G N
Sbjct: 495 QF----KATHI--L----DFGPGGASGLGVLTHRNKDGTGVR----VIVA----GTLDIN 536
Query: 484 LDDLEKYK 491
DD +K
Sbjct: 537 PDDDYGFK 544
Score = 50.8 bits (121), Expect = 5e-06
Identities = 67/517 (12%), Positives = 131/517 (25%), Gaps = 199/517 (38%)
Query: 1802 QLKDK-IESLHQPSEQ--------SKQQLAT-----ITTR--------HGNVLKRAQKKI 1839
QL+++ + L +P+E + +L +++ VL +
Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF 91
Query: 1840 EAE----KDI----GDCTNLDD--LEKYKALLQEVISHNSDMETLNDKCE--ALMELAAH 1887
E DI +D L K K L++ I+ + DK AL
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 1888 SPIR-----------EETLR-LQALY-------AALVTSVQGLVSQVEKNLSDQTEFLAK 1928
+ ++ L+ LY L+ +S++ + D + +
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 1929 KEEVEAWLHK----------AHATV--------Q------ECDELEAGIKEEQKNIE--T 1962
+ WL + Q L E + ++ T
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 1963 QYLQ-------------WNSFRETLAQMTAWL----------------------DSVEKN 1987
+ Q W SF ++ + L DS+E N
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 1988 IKQEIATPWTTTQELRSKLLKLKEILKKCEKGVGDHEAFVDKY-EECSQKLAQVEAKYAK 2046
+ + +P +L + + V Y + + L +
Sbjct: 332 --EGVPSP----------MLSIS----------NLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 2047 LI----------EPETSYEELQKRQGQLTALLTEKVDMDVLLNACVDLCD---------K 2087
L+ P++ Y G L K D K
Sbjct: 370 LVNGAKNLVVSGPPQSLY-------GLNLTLRKAKAPSG---------LDQSRIPFSERK 413
Query: 2088 VYEST-----SEPGHEPLRVQMEKLQQAVEALYDKITVTESLILSQVEAKYAKLIEP--- 2139
+ S + P H L L A + + + L+ + V + P
Sbjct: 414 LKFSNRFLPVASPFHSHL------LVPASD------LINKDLVKNNVSFNAKDIQIPVYD 461
Query: 2140 -ETSYEELQKRQGQLTALLA-----EKVDMDVLLNAS 2170
+L+ G ++ + V +
Sbjct: 462 TFDG-SDLRVLSGSISERIVDCIIRLPVKWETTTQFK 497
Score = 45.0 bits (106), Expect = 4e-04
Identities = 56/330 (16%), Positives = 92/330 (27%), Gaps = 115/330 (34%)
Query: 1377 EAYKQAYNEAYD-WLRKAKLGAQANADCHGEQQTTKDKADKIKQITKSL------PEGQK 1429
+ YK A D W R AD H + D + +L +G++
Sbjct: 1634 DLYK-TSKAAQDVWNR---------ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 1430 LIDKTVALKNNVLEST--GPIGKENINQEINQIT-----------LDWTNLQNTLQDIDK 1476
+ + A+ + E+ G + E I +EIN+ + L T Q T Q
Sbjct: 1684 IRENYSAM---IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT--QFT-Q---- 1733
Query: 1477 HHAKCLSLWNDFLSSKNTLEKWIE-GFQKKIE-----SEKDIGDCTNLDDLEKYKAL--- 1527
L L K E G S +G E Y AL
Sbjct: 1734 ---PAL-----TLMEKAAFEDLKSKGLIPADATFAGHS---LG--------E-YAALASL 1773
Query: 1528 -----LQEG---LHK--EADNKKVLIDSFNKGIIGMTELESEEVKDLIQVGVHGLQVELN 1577
++ + V D + GM + + +V Q L
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI------NPGRVAASFSQEALQ 1827
Query: 1578 ALLQNIEAEINK---VAN---AAQERKAMQDKISKLQSWLKQYIDYSGNKQALQSRLDKV 1631
+++ + + N Q QY+ +G+ +A LD V
Sbjct: 1828 YVVERVGKRTGWLVEIVNYNVENQ-----------------QYV-AAGDLRA----LDTV 1865
Query: 1632 NEIQESFPEISTKLQTL--SDHIENSSRKL 1659
+ + L S +E L
Sbjct: 1866 TNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 43.9 bits (103), Expect = 7e-04
Identities = 49/312 (15%), Positives = 101/312 (32%), Gaps = 96/312 (30%)
Query: 869 MAHNSLYINNR--QQTLEQIQHH--EKL---LQDVILSPDNKLAPCFSAEEGSPIKDKID 921
M + LY ++ Q + +H + + D++++ L F E+G I++
Sbjct: 1631 MGMD-LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 922 RLEKET----KAQSDRI-QDALKTLNQLIGHRKEFEVDVENVEAKLKE----------LE 966
+ ET K ++++I ++ + F + + L +E
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYT-----FRSE----KGLLSATQFTQPALTLME 1740
Query: 967 VAV------EGDVKTNNVLM---LQELLNKYAQLNEEAGELNMMISNVSIATEHMNLNDA 1017
A +G + + L E YA L S+A + M++
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGE----YAAL-------------ASLA-DVMSIESL 1782
Query: 1018 DRL------TVNDSV---SSMQKRYAQLSRTIEDRISTVNNKLQSVKRLQHKVEEAKALL 1068
+ T+ +V + Y + +N + Q ++ +
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNYG---------MIAINPGRVAASFSQEALQYVVERV 1833
Query: 1069 QKAESQLARPV-----STQ---AEDISEALTVYQKLLDEINSWKNSQSDEDLVHLADSIK 1120
K L V + Q A D+ AL +L+ I + D++ L S+
Sbjct: 1834 GKRTGWLVEIVNYNVENQQYVAAGDL-RALDTVTNVLNFIKL-QKI----DIIELQKSLS 1887
Query: 1121 PLDEVVERIENH 1132
+E +E H
Sbjct: 1888 -----LEEVEGH 1894
Score = 43.9 bits (103), Expect = 8e-04
Identities = 44/233 (18%), Positives = 75/233 (32%), Gaps = 64/233 (27%)
Query: 441 DKHHAKCL--SIWNDFLSSKNTLEKWI-EGFQK--KIEAEKDIGDC-TNLDDLEKYKALL 494
D H SI + + N + I G +K +I T +D K + +
Sbjct: 1650 DNHFKDTYGFSILD--IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF 1707
Query: 495 QEV------ISHNSDMETLNDKCE----AL--MELAAHSPIREETLRLQ----A---L-- 533
+E+ + S+ L+ + AL ME AA ++ + L A L
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSAT-QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE 1766
Query: 534 YAALVTSVQGLVSQVEKNLSDQTEFLAK-----KEEVEAWLHKAHATVQECAGNGSKNVL 588
YAAL S+ ++S + E + + V + A N +
Sbjct: 1767 YAALA-SLADVMS-----IESLVEVVFYRGMTMQVAVPR-DELGRSNYGMIAINPGRVAA 1819
Query: 589 KERLDTVNMVAERIP--------------EGQ------HLMSVLQDTFTKALD 621
+ + V ER+ E Q L ++ DT T L+
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL--DTVTNVLN 1870
Score = 38.9 bits (90), Expect = 0.027
Identities = 37/217 (17%), Positives = 68/217 (31%), Gaps = 73/217 (33%)
Query: 1849 TNLDDLEKYKALLQEV------ISHNSDMETLNDKCE----AL--MELAAHSPIREETLR 1896
T +D K + + +E+ + S+ L+ + AL ME AA ++ + L
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT-QFTQPALTLMEKAAFEDLKSKGLI 1753
Query: 1897 LQ----A---L--YAALVT-------------------SVQGLVSQVEKNLSDQTEFLAK 1928
A L YAAL + ++Q V + E S+
Sbjct: 1754 PADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813
Query: 1929 KEEVEAWLHKAHATVQECDELEAGIKEEQK--------NIE-TQY--------LQWNSFR 1971
V A + +Q E + + N+E QY L
Sbjct: 1814 PGRVAASF--SQEALQYVVE---RVGKRTGWLVEIVNYNVENQQYVAAGDLRAL------ 1862
Query: 1972 ETLAQMTAWLDSV-EKNIKQEIATPWTTTQELRSKLL 2007
+T+ + L+ + + I + +E+ L
Sbjct: 1863 DTVTNV---LNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 33.1 bits (75), Expect = 1.3
Identities = 53/328 (16%), Positives = 97/328 (29%), Gaps = 97/328 (29%)
Query: 1052 QSV---KRLQHKVEEAKALLQKAESQLARPVSTQAEDISE----ALTVYQKLLDEINSWK 1104
Q L + A+ + +A++ DI LT++ +
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH-------FGGE 1679
Query: 1105 NSQS--DEDLVHLADSIKPLDEVVERIENHAVPKLKSL-------LLLREQFTTLIMQIV 1155
+ + + ++I E+I S LL QFT Q
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT----QPA 1735
Query: 1156 GFITETTA-RVGEVDGNSATVQEK-IDKYDKIIA-----DIQEYEAILATASDKGDQLSS 1208
+ E A ++ K + D A EY A+ + A D +S
Sbjct: 1736 LTLMEKAAFED---------LKSKGLIPADATFAGHSLG---EYAALASLA----DVMS- 1778
Query: 1209 DGTISDRNEITEQLQSRKQQLHNLRKTVEKLRQQ------NEKRAAESEKLGAE-LEEII 1261
I E+ R + E R N R A S E L+ ++
Sbjct: 1779 ---IESLVEVVFY---RGMTMQVAVPRDELGRSNYGMIAINPGRVAAS--FSQEALQYVV 1830
Query: 1262 EALHARETAVPSSSRL----HNLRKTVEKLRQQ----NEKRAAESEKLGAELEEIIEALH 1313
E + R + + +N+ QQ + RA L+ + L
Sbjct: 1831 ERVGKRTGWL-----VEIVNYNVEN------QQYVAAGDLRA---------LDTVTNVL- 1869
Query: 1314 ARETAVKTLPVLLLEVTSVDVELDKQRL 1341
++ + ++ L+ S+ +E + L
Sbjct: 1870 -NFIKLQKIDIIELQK-SLSLEEVEGHL 1895
Score = 31.9 bits (72), Expect = 3.1
Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 26/107 (24%)
Query: 631 LREAMTVLRDSWDRLNRDLKSTSTQLKSYIARWN--------------ELDDLYNRFNMW 676
L + +D W+R + K T I N + + Y+ M
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA--MI 1692
Query: 677 LSGVENKLNEPSPVFTEIDLNTKWQQYV----NDELEWENHSQNTLQ 719
+ + + +F EI+ ++ Y L + +Q T Q
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHST--SYTFRSEKGLL---SATQFT-Q 1733
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 64.9 bits (158), Expect = 7e-11
Identities = 56/325 (17%), Positives = 113/325 (34%), Gaps = 13/325 (4%)
Query: 238 LSSWCGYEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLL 297
+ + + WL E L + L L+ ++ + D ++H+ L
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALL-ASEDYGKDLASVNNLLKKHQLLEADISAHEDRLK 60
Query: 298 QLKDK----IESLHQPSEQSKQQLATITTRHGNVLKRAQKFTEAYEGIVSIHQAYTKAVL 353
L + + S + Q K + TI R + A +HQ + + +
Sbjct: 61 DLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQ-FFRDMD 119
Query: 354 DTQEWIDATYNAVNMWGDLTLERVSLHSNLERLKNLEKELGRIGHKTVALKNNV--LEST 411
D + WI V D + + + ++ K LE EL + + L
Sbjct: 120 DEESWIKEKKLLV-SSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDD 178
Query: 412 GPIGKENINQEINQITLDWTNLQNTLQVIDKHHAKCLSIWNDFLSSKNTLEKWIEGFQKK 471
IGKE I Q + Q W L+ + + L + F+++ E WI
Sbjct: 179 NTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLE-YQQFVANVEEEEAWINEKMTL 237
Query: 472 IEAEKDIGDCTNLDD-LEKYKALLQEVISHNSDMETLNDKCEALMELAAHSP--IREETL 528
+ +E + L+K++A + H + + E L++ H I +
Sbjct: 238 VASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMK 297
Query: 529 RLQALYAALVTSVQGLVSQVEKNLS 553
L+ + L + +++++N +
Sbjct: 298 GLKGKVSDLEKAAAQRKAKLDENSA 322
Score = 51.0 bits (122), Expect = 2e-06
Identities = 57/352 (16%), Positives = 131/352 (37%), Gaps = 52/352 (14%)
Query: 699 KWQQYVNDELEWENHSQNTLQWLDNIRS--DMKTLLERSKHIVDDIEKKKDDLKPIQKEA 756
+ + D W + + L D + + LL++ + + DI +D LK + +A
Sbjct: 7 NFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQA 66
Query: 757 QQLSEWD----SSIVPKVSDLETRWAAVKSAWDAKHSDLSSEIAQYSSYQNAVQDAEKWL 812
L S + K + R+ +KS A+ + L+ E + + + D E W+
Sbjct: 67 DSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLN-ESHRLHQFFRDMDDEESWI 125
Query: 813 LQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDYSSYQNAVQDAEKWLLQISFQLMAHN 872
+ +L+ + Y + + H++L + ++++ A+Q +L +L N
Sbjct: 126 KEK--KLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQG----VLDTGKKLSDDN 179
Query: 873 SLYINNRQQTLEQIQHHEKLLQDVILSPDNKLAPCFSAEEGSPIKDKIDRLEKETKAQSD 932
++ QQ L Q D L++ A+
Sbjct: 180 TIGKEEIQQRLAQFV------------------------------DHWKELKQLAAARGQ 209
Query: 933 RIQDALKTLNQLIGHRKEFEVDVENVEAKLKELEVAVEGDVKTNNVLMLQELLNKYAQLN 992
R++++L+ ++F +VE EA + E V + + + +Q LL K+
Sbjct: 210 RLEESLE--------YQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFE 261
Query: 993 EEAGELNMMISNV-SIATEHMNLNDADRLTVNDSVSSMQKRYAQLSRTIEDR 1043
+ +++V + + + N+ + + ++ + + L + R
Sbjct: 262 TDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQR 313
Score = 50.3 bits (120), Expect = 3e-06
Identities = 44/317 (13%), Positives = 113/317 (35%), Gaps = 9/317 (2%)
Query: 346 QAYTKAVLDTQEWIDATYNAVNMWGDLTLERVSLHSNLERLKNLEKELGRIGHKTVALKN 405
Q + + D W+ + D + S+++ L++ + LE ++ + L +
Sbjct: 6 QNFNTGIKDFDFWLSEVEALLASE-DYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNS 64
Query: 406 --NVLESTGPIGKENINQEINQITLDWTNLQNTLQVIDKHHAKCLSIWNDFLSSKNTLEK 463
+ L ++ + + I + +++ + + F + E
Sbjct: 65 QADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQ-FFRDMDDEES 123
Query: 464 WIEGFQKKIEAEKDIGDCTNLDDL-EKYKALLQEVISHNSDMETLNDKCEALMEL--AAH 520
WI+ + + +E D T + +L +K+K L E+ +H ++ + D + L +
Sbjct: 124 WIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGK 183
Query: 521 SPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQECA 580
I++ + + L ++E++L Q +F+A EE EAW+++ V
Sbjct: 184 EEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQ-QFVANVEEEEAWINEKMTLVASED 242
Query: 581 GNGSKNVLKERLDTVNMVAERIPEGQHLMSVLQDTFTKALDTTPSDQQDSLREAMTVLRD 640
+ ++ L + ++ + + +++ M L+
Sbjct: 243 YGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHH-VENITAKMKGLKG 301
Query: 641 SWDRLNRDLKSTSTQLK 657
L + +L
Sbjct: 302 KVSDLEKAAAQRKAKLD 318
Score = 49.1 bits (117), Expect = 1e-05
Identities = 41/312 (13%), Positives = 110/312 (35%), Gaps = 19/312 (6%)
Query: 949 KEFEVDVENVEAKLKELEVAVEGDVKTNNVLMLQELLNKYAQLNEEAGELNMMISNV-SI 1007
+ F +++ + L E+E + + ++ + LL K+ L + + ++ S
Sbjct: 6 QNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQ 65
Query: 1008 ATEHMNLNDADRLTVNDSVSSMQKRYAQLSRTIEDRISTVNNKLQSVKRLQHKVEEAKAL 1067
A M + D V D ++ R+ ++ R + +N + + + +E +
Sbjct: 66 ADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWI 125
Query: 1068 LQKAESQLARPVSTQAEDISEALTVYQKLLDEINSWKNS-------------QSDEDLVH 1114
+K + + +++L E+ + + + +
Sbjct: 126 KEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEE 185
Query: 1115 LADSIKPLDEVVERIENHAVPKLKSL--LLLREQFTTLIMQIVGFITETTARVGEVD--G 1170
+ + + + ++ A + + L L +QF + + +I E V D
Sbjct: 186 IQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGD 245
Query: 1171 NSATVQEKIDKYDKIIADIQEYEAILATASDKGDQLSSDGTISDRNEITEQLQSRKQQLH 1230
A +Q + K++ D ++ + G+ L IT +++ K ++
Sbjct: 246 TLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNN-HHVENITAKMKGLKGKVS 304
Query: 1231 NLRKTVEKLRQQ 1242
+L K + + +
Sbjct: 305 DLEKAAAQRKAK 316
Score = 46.4 bits (110), Expect = 6e-05
Identities = 49/335 (14%), Positives = 109/335 (32%), Gaps = 37/335 (11%)
Query: 1742 LSSWCGYEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLL 1801
+ + + WL E L + L L+ ++ + D ++H+ L
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALL-ASEDYGKDLASVNNLLKKHQLLEADISAHEDRLK 60
Query: 1802 QLKDK----IESLHQPSEQSKQQLATITTRHGNVLKRAQKKIEAEKDIGDCTN-LDDLEK 1856
L + + S + Q K + TI R + A + + D++
Sbjct: 61 DLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDD 120
Query: 1857 YKALLQEVISHNSDMETLNDKCEALMELAAHSPIREETLRLQALYAALVTSVQGLVSQVE 1916
++ ++E S + D H + E + ++ + + L
Sbjct: 121 EESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNT 180
Query: 1917 KNLSDQTEFLAKKEEVEAWLHKAHATVQECDELEAGIKEEQKNIETQYLQWNSFRETLAQ 1976
KEE++ L + EL+ + +E + L++ F + +
Sbjct: 181 IG----------KEEIQQRLAQFVDHW---KELKQLAAARGQRLE-ESLEYQQFVANVEE 226
Query: 1977 MTAWLDSVEKNIKQEIATPWTTTQELRSKLLKLKEILKKCEKGVGDHEAFVDKYEECSQK 2036
AW++ + +++ L ++ +LKK HEAF + +
Sbjct: 227 EEAWINEKMTLV---------ASEDYGDTLAAIQGLLKK-------HEAFETDFTVHKDR 270
Query: 2037 LAQVEAKYAKLIEPETS-YEELQKRQGQLTALLTE 2070
+ V A LI+ E + + L +++
Sbjct: 271 VNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSD 305
Score = 44.9 bits (106), Expect = 2e-04
Identities = 37/303 (12%), Positives = 98/303 (32%), Gaps = 48/303 (15%)
Query: 144 LQEVLSHKRIIESLLDKSKSLPQINKDQA--LEKAIVSVNKRYEDLVDGILKTISQLEES 201
++ +H+ ++ L ++ SL + ++ ++N R++ + ++L ES
Sbjct: 49 EADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNES 108
Query: 202 LDIFQQFQQLQKAYQEDQKQLWDKLSSLTERELKGKLSSWCGYEESVATLLDWLKVTEKK 261
+ Q F+ + W+K +
Sbjct: 109 HRLHQFFRDMDD-------------------------------------EESWIKEKKLL 131
Query: 262 LGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESL----HQPSEQSKQQL 317
+ + L + + ++ + + +H+ + + D + L E+ +Q+L
Sbjct: 132 V-SSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRL 190
Query: 318 ATITTRHGNVLKRAQKFTEAYEGIVSIHQAYTKAVLDTQEWIDATYNAVNMWGDLTLERV 377
A + + A + E + Q + V + + WI+ V D
Sbjct: 191 AQFVDHWKELKQLAAARGQRLEESLEYQQ-FVANVEEEEAWINEKMTLVA-SEDYGDTLA 248
Query: 378 SLHSNLERLKNLEKELGRIGHKTVALKNNV--LESTGPIGKENINQEINQITLDWTNLQN 435
++ L++ + E + + + N L ENI ++ + ++L+
Sbjct: 249 AIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEK 308
Query: 436 TLQ 438
Sbjct: 309 AAA 311
Score = 42.9 bits (101), Expect = 7e-04
Identities = 42/319 (13%), Positives = 116/319 (36%), Gaps = 24/319 (7%)
Query: 1159 TETTARVGEVDGNSATVQEKIDKYDKIIADIQEYEAILATASDKGDQLSSDGTISDRNEI 1218
E + + A+V + K+ + ADI +E L + + D L + D +++
Sbjct: 22 VEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSA-FDTSQV 80
Query: 1219 TEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVPSSSRLH 1278
++ ++ + ++ R+ + + ++++ + ++ V S
Sbjct: 81 KDKRETINGRFQRIKSMAAA-RRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGR 139
Query: 1279 NLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVKTLPVLLLEVTSVDVELDK 1338
+L V+ LR+++++ AE ++ +++ L + ++ E +
Sbjct: 140 DL-TGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKK-----------LSDDNTIGKEEIQ 187
Query: 1339 QRLELATKEVQPYVQRYETLKKNIAEAIDKFETQANEHEAYKQAYNEAYDWLRKAKLGAQ 1398
QRL ++ LK+ A + E ++ E++ + E W+ + K+
Sbjct: 188 QRLAQFV-------DHWKELKQLAAARGQRLE-ESLEYQQFVANVEEEEAWINE-KMTLV 238
Query: 1399 ANADCHGEQQTTKDKADKIKQITKSLPEGQKLIDKTVALKNNVLESTGPIGKENINQEIN 1458
A+ D + K + + ++ A ++++ ENI ++
Sbjct: 239 ASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKK-NNHHVENITAKMK 297
Query: 1459 QITLDWTNLQNTLQDIDKH 1477
+ ++L+
Sbjct: 298 GLKGKVSDLEKAAAQRKAK 316
Score = 42.2 bits (99), Expect = 0.001
Identities = 46/318 (14%), Positives = 108/318 (33%), Gaps = 24/318 (7%)
Query: 1698 QWNEYETSLGKLITWLNDTENVLKNFTLQPTLNE-KKQQRELKGKLSSWCGYEESVATLL 1756
+ + T + WL++ E +L + L ++ + + +E+ + L
Sbjct: 4 KQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDL- 62
Query: 1757 DWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESLHQPSEQ 1816
D + + + + Q + + + S +
Sbjct: 63 -------NSQADSL-----MTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHR 110
Query: 1817 SKQQLATITTRHGNVLKRAQKKIEAEKDIGDCTNLDDL-EKYKALLQEVISHNSDMETLN 1875
Q + +K + + +E D T + +L +K+K L E+ +H ++ +
Sbjct: 111 -LHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVL 169
Query: 1876 DKCEALMEL--AAHSPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVE 1933
D + L + I++ + + L ++E++L Q +F+A EE E
Sbjct: 170 DTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQ-QFVANVEEEE 228
Query: 1934 AWLHKAHATVQECDELEAGIKEEQKNIETQYLQWNSFRETLAQMTAWLDSVEKNIKQEIA 1993
AW+++ V D + I+ + +F ++ V N + I
Sbjct: 229 AWINEKMTLVASED-----YGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIK 283
Query: 1994 TPWTTTQELRSKLLKLKE 2011
+ + +K+ LK
Sbjct: 284 KNNHHVENITAKMKGLKG 301
Score = 41.0 bits (96), Expect = 0.003
Identities = 41/300 (13%), Positives = 104/300 (34%), Gaps = 34/300 (11%)
Query: 65 DDWLTGLEKDLDTLKNTTDVEAKNSLLQK---LLTEKDQAGHKLTYLTSSGEKLYLDTAA 121
D WL+ +E L + D+ + N+LL+K L + +L L S + L + ++A
Sbjct: 16 DFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSL-MTSSA 74
Query: 122 KGREVVRQQLRALRD--------SKCSKTTLQEVLSHK---RIIESLLDKSKSLPQINKD 170
V+ + + + + L E R ++ K +
Sbjct: 75 FDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSS 134
Query: 171 QALEKAIVSVNKRYEDLVDGILKTISQLEESLD-IFQQFQQLQKAYQEDQKQLWDKLSSL 229
+ + + V + + ++ E ++ + ++L ++++ +L+
Sbjct: 135 EDYGRDLTGVQNLRKKH-KRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQF 193
Query: 230 TER--ELKGKLSS----------WCGYEESVATLLDWLKVTEKKLGDEMELKTTLDEKKA 277
+ ELK ++ + + +V W+ + E + TL +
Sbjct: 194 VDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASE-DYGDTLAAIQG 252
Query: 278 QLQVYRTIYQDATSHQQDLLQLKDK----IESLHQPSEQSKQQLATITTRHGNVLKRAQK 333
L+ + D T H+ + + I+ + E ++ + + ++ K A +
Sbjct: 253 LLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQ 312
Score = 31.0 bits (70), Expect = 4.7
Identities = 38/295 (12%), Positives = 103/295 (34%), Gaps = 52/295 (17%)
Query: 539 TSVQGLVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQECAGNGSKNVLKERLDTVN-- 596
+ + + ++K+ + + A ++ ++ +A + + + +K++ +T+N
Sbjct: 33 KDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTS--SAFDTSQVKDKRETINGR 90
Query: 597 ------MVAERIPEGQHLMSVLQDTFTKALDTTPSDQQDSLREAMTVLRDSWDRLNRDLK 650
M A R + + Q F + +D D++ ++E ++ S + RDL
Sbjct: 91 FQRIKSMAAARRAKLNESHRLHQ--FFRDMD----DEESWIKEKKLLV--SSEDYGRDLT 142
Query: 651 STSTQLKSYIARWNELDDLYNRFNMWLSGVENKLNEPSPVFTEI-----DLNTKWQQYVN 705
K + EL L + ++ + EI W++
Sbjct: 143 GVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQ 202
Query: 706 DELEWENHSQNTLQ-------------WLDNIRSDMKT------------LLERSKHIVD 740
+ +L+ W++ + + + LL++ +
Sbjct: 203 LAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFET 262
Query: 741 DIEKKKDDLKPIQKEAQQLSEWDS----SIVPKVSDLETRWAAVKSAWDAKHSDL 791
D KD + + + L + ++ +I K+ L+ + + ++ A + + L
Sbjct: 263 DFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKL 317
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 62.6 bits (151), Expect = 1e-09
Identities = 58/458 (12%), Positives = 127/458 (27%), Gaps = 22/458 (4%)
Query: 632 REAMTVLRDSWDRLNRDLKSTSTQLKSYIARWNELDDLYNRFNMWLSGVENKLNEPSPVF 691
R ++ +L + +L+ +N L PS
Sbjct: 276 RAPENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGK 335
Query: 692 TEIDLNTKWQQYVNDELEWENHSQNTL----------QWLDNIRSDMKTLLERSKHIVDD 741
D+N W E +E N + + S ++ + + ++
Sbjct: 336 MVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQ 395
Query: 742 IEKKKDDLKPIQKEAQQLSEWDSSIVPKVSDLETRWAAVKSAWDAKHSDLSSEIAQYSSY 801
+ + L I+ ++ ++S + +E A + + + D S A+
Sbjct: 396 KDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKI 455
Query: 802 QNAVQDAEKWLLQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDYSSYQNAVQDAE--- 858
+ + + L L Q LE + +QD
Sbjct: 456 CDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVH 515
Query: 859 -----KWLLQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDVILSPDNKLAPCFSAEEG 913
+ L Q A RQ L K++Q ++ +
Sbjct: 516 TIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPY--TTITP 573
Query: 914 SPIKDKIDRLEKETKAQSDRIQDALKTLNQLIGHRKEFEVDVENVEAKLKELEVAVEGDV 973
I K + + + + + + Q RK+F + ++ +
Sbjct: 574 QEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRIS 633
Query: 974 KTNNVLMLQELLNKYAQLNEEAGELNMMISNVSIATEHM-NLNDADRLTVNDSVSSMQKR 1032
+ L++ LN Q + I + + + D N ++ ++
Sbjct: 634 IEMH-GTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHIRVG 692
Query: 1033 YAQLSRTIEDRISTVNNKLQSVKRLQHKVEEAKALLQK 1070
+ QL TI I+ V N++ + E+
Sbjct: 693 WEQLLTTIARTINEVENQILTRDAKGISQEQMNEFRAS 730
Score = 56.1 bits (134), Expect = 1e-07
Identities = 57/543 (10%), Positives = 175/543 (32%), Gaps = 24/543 (4%)
Query: 1541 VLIDSFNKGIIGMTELESEEVKDLIQVGVHGLQVELNALLQNIEAEINKVANAAQERKAM 1600
+F+ T + L + L ++ I + + R
Sbjct: 220 SFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLENRA-P 278
Query: 1601 QDKISKLQSWLKQYIDYSGNKQALQSRLDKVNEIQESFPEISTKLQTLSDHIENSSRKLP 1660
++ + +Q L+ + DY + ++ + +++ +F + TKL+ + S
Sbjct: 279 ENTMQAMQQKLEDFRDY--RRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKM 336
Query: 1661 SRTNEAMYRDLANLRYDFEKCVSSLSDVKQGLESRLVQWNEYETSLGKLITWLNDTENVL 1720
+ L +E+ L + + LE ++ +W + E +L
Sbjct: 337 VSDINNAWGGLEQAEKGYEE---WLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAML 393
Query: 1721 KNFTLQPTLNE--KKQQRELKGKLSSWCGYEESVATLLDWLKVTEKKLGDEMELKTTLDE 1778
+ + K ++ + S +++ V + + + D + +
Sbjct: 394 QQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNE--LDYYDSPSVNAR 451
Query: 1779 KKAQLQVYRTIYQDATSHQQDLLQLKDKIESLHQPSEQSKQQLATITTRHGNVLKRAQKK 1838
+ + + ++ L + + +E++ Q + ++ A ++ Q
Sbjct: 452 CQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDT 511
Query: 1839 IEAEKDIGDCTNLDDLEKYKALLQEVISHNSDMETLNDKCEALMELAA------------ 1886
E++KA L + + ++++ +++
Sbjct: 512 FIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTI 571
Query: 1887 -HSPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQE 1945
I + ++ L ++ ++ ++N + +F A+ + W+ +
Sbjct: 572 TPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGR 631
Query: 1946 CDELEAGIKEEQKNIETQYLQW-NSFRETLAQMTAWLDSVEKNIKQEIATPWTTTQELRS 2004
G E+Q N QY + +++ + Q+ +++ + + T + +R
Sbjct: 632 ISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHIRV 691
Query: 2005 KLLKLKEILKKCEKGVGDHEAFVDKYEECSQKLAQVEAKYAKLIEPETSYEELQKRQGQL 2064
+L + + V + D +++ + A + +T + + + L
Sbjct: 692 GWEQLLTTIARTINEVENQILTRDAKGISQEQMNEFRASFNHFDRKKTGMMDCEDFRACL 751
Query: 2065 TAL 2067
++
Sbjct: 752 ISM 754
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 55.8 bits (134), Expect = 8e-08
Identities = 41/322 (12%), Positives = 104/322 (32%), Gaps = 12/322 (3%)
Query: 244 YEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKI 303
Y W+ E + + E+ + L+ + + + +++ QL +
Sbjct: 9 YYLDADEAEAWIGEQELYVISD-EIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRA 67
Query: 304 ESL----HQPSEQSKQQLATITTRHGNVLKRAQKFTEAYEGIVSIHQAYTKAVLDTQEWI 359
+ L H EQ + + + + A++ E + + Q + D ++WI
Sbjct: 68 QGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQ-LKRETDDLEQWI 126
Query: 360 DATYNAVNMWGDLTLERVSLHSNLERLKNLEKELGRIGHKTVALKNNV---LESTGPIGK 416
+ ++ + + ++ ++ +E G IG + V N L G
Sbjct: 127 SEKELVAS-SPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEA 185
Query: 417 ENINQEINQITLDWTNLQNTLQVIDKHHAKCLSIWNDFLSSKNTLEKWIEGFQKKIEAEK 476
I + + + W +L + + A + + + + I+ +++ +
Sbjct: 186 ATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLH-RYFYTGAEILGLIDEKHRELPEDV 244
Query: 477 DIGDCTNLDDLEKYKALLQEVISHNSDMETLNDKCEALMELAAHSPIREETLRLQALYAA 536
+ T + A ++V ++ D L A + Q + AA
Sbjct: 245 GLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAA 304
Query: 537 LVTSVQGLVSQVEKNLSDQTEF 558
++ + L D +
Sbjct: 305 W-QALLDACAGRRTQLVDTADK 325
Score = 49.2 bits (117), Expect = 9e-06
Identities = 41/354 (11%), Positives = 100/354 (28%), Gaps = 45/354 (12%)
Query: 454 FLSSKNTLEKWIEGFQKKIEAEKDIGDCTNLDD-LEKYKALLQEVISHNSDMETLNDKCE 512
+ + E WI + + +++ D L+++ + V + +++ L + +
Sbjct: 9 YYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQ 68
Query: 513 ALMELAAHSP--IREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWLH 570
L+ I ++ YA L + ++E + + +++E W+
Sbjct: 69 GLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLF-QLKRETDDLEQWIS 127
Query: 571 KAHATVQ-ECAGNGSKNVLKERLDTVNMVAERIPEGQHLMSVLQDTFTKALDTTPSDQQD 629
+ G +V R + E GQ + + + +D S+
Sbjct: 128 EKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSE-AA 186
Query: 630 SLREAMTVLRDSWDRLNRDLKSTSTQLKSYIARWNELDDLYNRFNMWLSGVENKLNEPSP 689
++ E L + W L + + L + + +L E
Sbjct: 187 TIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTG-AEILGLIDEKHRELPEDVG 245
Query: 690 VFTEIDLNTKWQQYVNDELEWENHSQNTLQWLDNIRSDMKTLLERSKHIVDDIEKKKDDL 749
S ++ D+ +
Sbjct: 246 ---------------------------------LDASTAESFHRVHTAFERDVHLLGVQV 272
Query: 750 KPIQKEAQQLSE-----WDSSIVPKVSDLETRWAAVKSAWDAKHSDLSSEIAQY 798
+ Q A +L +I K ++ W A+ A + + L ++
Sbjct: 273 QQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADKF 326
Score = 48.8 bits (116), Expect = 1e-05
Identities = 38/312 (12%), Positives = 93/312 (29%), Gaps = 20/312 (6%)
Query: 950 EFEVDVENVEAKLKELEVAVEGDVKTNNVLMLQELLNKYAQLNEEAGELNMMISNVSIAT 1009
++ +D + EA + E E+ V D + +L ++ + + I ++
Sbjct: 8 QYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRA 67
Query: 1010 EHM-NLNDADRLTVNDSVSSMQKRYAQLSRTIEDRISTVNNKLQSVKRLQHKVEEAKALL 1068
+ + + + + + K YA L E+R + N + + + + +
Sbjct: 68 QGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQWIS 127
Query: 1069 QKAESQLARPVSTQAEDISEALTVYQKLLDEINSWKNSQSDEDLVHLADSIKPL-----D 1123
+K + + + ++ ++ E + + +++ + +
Sbjct: 128 EKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERV-DNVNAFIERLIDAGHSEAA 186
Query: 1124 EVVERIE--NHAVPKLKSLLLLREQFTTLIMQIVGF----------ITETTARVGEVDGN 1171
+ E + N L L+ R Q + + I E + E G
Sbjct: 187 TIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGL 246
Query: 1172 SA-TVQEKIDKYDKIIADIQEYEAILATASDKGDQLSSDGTISDRNEITEQLQSRKQQLH 1230
A T + + D+ + D +L + I + Q
Sbjct: 247 DASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQ 306
Query: 1231 NLRKTVEKLRQQ 1242
L R Q
Sbjct: 307 ALLDACAGRRTQ 318
Score = 43.8 bits (103), Expect = 4e-04
Identities = 30/274 (10%), Positives = 92/274 (33%), Gaps = 11/274 (4%)
Query: 1854 LEKYKALLQEVISHNSDMETLNDKCEALMELAAHSP--IREETLRLQALYAALVTSVQGL 1911
L+++ + V + +++ L + + L+ I ++ YA L +
Sbjct: 43 LKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEER 102
Query: 1912 VSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQECD-----ELEAGIKEEQKNIETQYLQ 1966
++E + + +++E W+ + + + ++++ ++ +
Sbjct: 103 KRKLENMYHLF-QLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGA 161
Query: 1967 WNSFR-ETLAQMTAWLDSVEKNIKQEIATPWTTTQELRSKLLKLKEILKKCEKGVGDHEA 2025
R + + L + IA E+ + LL+L + + D
Sbjct: 162 IGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHR 221
Query: 2026 FVDKYEECSQKLAQVEAKYAKLIEPETSYEELQKRQGQLTALLTEKVDMDVLLNACVDLC 2085
+ E + + + + + + TA + + V + D+
Sbjct: 222 YFYTGAEILGLIDEKHRELPE--DVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVA 279
Query: 2086 DKVYESTSEPGHEPLRVQMEKLQQAVEALYDKIT 2119
++ + + E ++ + +++ A +AL D
Sbjct: 280 TRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACA 313
Score = 41.9 bits (98), Expect = 0.002
Identities = 34/333 (10%), Positives = 102/333 (30%), Gaps = 35/333 (10%)
Query: 1748 YEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKI 1807
Y W+ E + + E+ + L+ + + + +++ QL +
Sbjct: 9 YYLDADEAEAWIGEQELYVISD-EIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRA 67
Query: 1808 ESL----HQPSEQSKQQLATITTRHGNVLKRAQKKIEAEKDIGDCTNL----DDLEKYKA 1859
+ L H EQ + + + + A+++ ++ + + +L + + +
Sbjct: 68 QGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEER---KRKLENMYHLFQLKRETDDLEQ 124
Query: 1860 LLQEVISHNSDMETLNDKCEALMELAAHSPIREETLRLQALYAALVTSVQGLVSQ-VEKN 1918
+ E S E D + E A+ V +V + + ++
Sbjct: 125 WISEKELVASSPEMGQDFDHVTLLRDKFRDFARE---TGAIGQERVDNVNAFIERLIDAG 181
Query: 1919 LSDQTEFLAKKEEVEAWLHKAHATVQECDELEAGIKEEQKNIETQYLQWNSFRETLAQMT 1978
S+ K+ + + +L I + + + + T A++
Sbjct: 182 HSEAATIAEWKDGLN----------EMWADLLELIDTRMQLLA-ASYDLHRYFYTGAEIL 230
Query: 1979 AWLDSVEKNIKQEIATPWTTTQELRSKLLKLKEILKKCEKGVGDHEAFVDKYEECSQKLA 2038
+D + + +++ +T + + + V ++++ + +L
Sbjct: 231 GLIDEKHRELPEDVGLDASTAESFHRVHTAFERDVHL-------LGVQVQQFQDVATRLQ 283
Query: 2039 QVEAKYAKLIEPETSYEELQKRQGQLTALLTEK 2071
A + +E+ L +
Sbjct: 284 TAYAGEKA-EAIQNKEQEVSAAWQALLDACAGR 315
Score = 40.3 bits (94), Expect = 0.005
Identities = 40/318 (12%), Positives = 95/318 (29%), Gaps = 53/318 (16%)
Query: 793 SEIAQYSSYQNAVQDAEKWLLQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDYSSYQN 852
S + Y +AE W+ + +++ + + + ++ H + + Y
Sbjct: 1 SNANEAQQYYLDADEAEAWIGEQELYVISDE--IPKDEEGAIVMLKRHLRQQRAVEDYGR 58
Query: 853 AVQDAEKWLLQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDVILSPDNKLAPCFSAEE 912
++ L + L++ + Q+ H L+DV KL + +
Sbjct: 59 NIKQ----LASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQ 114
Query: 913 GSPIKDKIDRL-----EKETKAQSDRIQDALKTLNQLIGHRKEFEVDVENVEAKLKELEV 967
+K + D L EKE A S + + L ++F + +
Sbjct: 115 ---LKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQ------- 164
Query: 968 AVEGDVKTNNVLMLQELLNKYAQLNEEAGELNMMISNVSIATEHMNLNDADRLTVNDSVS 1027
+ +N L ++ ++ T+ +
Sbjct: 165 ------------------ERVDNVNAFIERL-------------IDAGHSEAATIAEWKD 193
Query: 1028 SMQKRYAQLSRTIEDRISTVNNKLQSVKRLQHKVEEAKALLQKAESQLARPVSTQAEDIS 1087
+ + +A L I+ R+ + + R + E L+ + +L V A
Sbjct: 194 GLNEMWADLLELIDTRMQLLAASYD-LHRYFYTGAEILGLIDEKHRELPEDVGLDASTAE 252
Query: 1088 EALTVYQKLLDEINSWKN 1105
V+ +++
Sbjct: 253 SFHRVHTAFERDVHLLGV 270
Score = 40.3 bits (94), Expect = 0.006
Identities = 36/329 (10%), Positives = 83/329 (25%), Gaps = 33/329 (10%)
Query: 557 EFLAKKEEVEAWLHKAHATVQECAGNGSKNVLKERLDTVNMVAERIPEGQHLMSVLQDTF 616
++ +E EAW+ + V + L + + + L
Sbjct: 8 QYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRA 67
Query: 617 TKALDTTPSDQQDSLREAMTVLRDSWDRLNRDLKSTSTQLKSYIARWNELDDLYNRFNMW 676
L + + + + + L + +L++ + +L + W
Sbjct: 68 QGLLSAGHPE-GEQIIRLQGQVDKHYAGLKDVAEERKRKLEN-MYHLFQLKRETDDLEQW 125
Query: 677 LSGVENKLNEPSPVFTEIDLNTKWQQYVNDELEWENHSQNTLQWLDNIRSDMKTLLERSK 736
+S E + P E + D R + +
Sbjct: 126 ISEKELVASSP---------------------EMGQDFDHVTLLRDKFRDFARETGAIGQ 164
Query: 737 HIVDDIEKKKDDLKPIQKEAQQLSEWDSSIVPKVSDLETRWAAVKSAWDAKHSDLSSEIA 796
VD++ + L +I L WA + D + L +
Sbjct: 165 ERVDNVNAFIERLIDAGHSEAA------TIAEWKDGLNEMWADLLELIDTRMQLL-AASY 217
Query: 797 QYSSYQNAVQDAEKWLLQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDYSSYQNAVQD 856
Y + + + +L + + H +D VQ
Sbjct: 218 DLHRYFYTGAEILGLIDEKHREL---PEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQ 274
Query: 857 AEKWLLQISFQLMAHNSLYINNRQQTLEQ 885
+ ++ + I N++Q +
Sbjct: 275 FQDVATRLQTAYAGEKAEAIQNKEQEVSA 303
Score = 40.0 bits (93), Expect = 0.007
Identities = 37/308 (12%), Positives = 92/308 (29%), Gaps = 51/308 (16%)
Query: 141 KTTLQEVLSHKRIIESLLDKSKSLPQINKDQA--LEKAIVSVNKRYEDLVDGILKTISQL 198
+ V + R I+ L +++ L + + + V+K Y L D + +L
Sbjct: 47 LRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKL 106
Query: 199 EESLDIFQQFQQLQKAYQEDQKQLWDKLSSLTERELKGKLSSWCGYEESVATLLDWLKVT 258
E +FQ ++ L W+
Sbjct: 107 ENMYHLFQLKRETDD-------------------------------------LEQWISEK 129
Query: 259 EKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDK-----IESLHQPSEQS 313
E E+ D +R ++ + Q+ + + I++ H +
Sbjct: 130 ELVASS-PEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATI 188
Query: 314 KQQLATITTRHGNVLKRAQKFTEAYEGIVSIHQAYTKAVLDTQEWIDATYNAVNMWGDLT 373
+ + ++L+ + +H+ Y + ID + + D+
Sbjct: 189 AEWKDGLNEMWADLLELIDTRMQLLAASYDLHR-YFYTGAEILGLIDEKHRELP--EDVG 245
Query: 374 LERVSLHSNLERLKNLEKELGRIGHKTVALKN---NVLESTGPIGKENINQEINQITLDW 430
L+ + S E+++ +G + ++ + + E I + +++ W
Sbjct: 246 LDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAW 305
Query: 431 TNLQNTLQ 438
L +
Sbjct: 306 QALLDACA 313
Score = 37.6 bits (87), Expect = 0.041
Identities = 39/328 (11%), Positives = 107/328 (32%), Gaps = 13/328 (3%)
Query: 1371 TQANEHEAYKQAYNEAYDWLRKAKLGAQANADCHGEQQTTKDKADKIKQITKSLPEGQKL 1430
+ ANE + Y +EA W+ + + + +++ + + +++ + +
Sbjct: 1 SNANEAQQYYLDADEAEAWIG-EQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRN 59
Query: 1431 IDKTVALKNNVLESTGPIGKENINQEINQITLDWTNLQNTLQDIDKHHAKCLSLWNDFLS 1490
I + + L S G E I + Q+ + L++ ++ + L+
Sbjct: 60 IKQLASRAQG-LLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLF-QLKR 117
Query: 1491 SKNTLEKWIEGFQKKIESEKDIGDCTNLDDLEKYKALLQEGLHKEADNKKVLIDSFNKGI 1550
+ LE+WI + S + D ++ L + +++F + +
Sbjct: 118 ETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERL 177
Query: 1551 IGMTELESEEVKDLIQVGVHGLQVELNALLQNIEAEINKVANAAQERKAMQDKISKLQSW 1610
I E+ + + GL LL+ I+ + +A + + +++
Sbjct: 178 IDAGHSEAATIAEWKD----GLNEMWADLLELIDTRMQLLAASYDLHRYFYT-GAEILGL 232
Query: 1611 LKQ-----YIDYSGNKQALQSRLDKVNEIQESFPEISTKLQTLSDHIENSSRKLPSRTNE 1665
+ + D + +S + + ++Q D E
Sbjct: 233 IDEKHRELPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAE 292
Query: 1666 AMYRDLANLRYDFEKCVSSLSDVKQGLE 1693
A+ + ++ + + + + L
Sbjct: 293 AIQNKEQEVSAAWQALLDACAGRRTQLV 320
Score = 35.3 bits (81), Expect = 0.20
Identities = 25/306 (8%), Positives = 87/306 (28%), Gaps = 24/306 (7%)
Query: 1190 QEYEAILATASDKGDQLSSDGTISDRNEITEQL---QSRKQQLHNLRKTVEKLRQQNEKR 1246
+ + A ++ + SD D L +++ + + + +++L + +
Sbjct: 11 LDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGL 70
Query: 1247 AAESEKLGAELEEIIEALHARETAVPS-----------SSRLHNLRKTVEKLRQ--QNEK 1293
+ G ++ + + + L L++ + L Q ++
Sbjct: 71 LSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQWISEKE 130
Query: 1294 RAAESEKLGAELEEIIEALHARETAVKTLPVLLLEVTSVDVELDKQRLELATKEVQPYVQ 1353
A S ++G + + + + + E ++ ++ E +
Sbjct: 131 LVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAE 190
Query: 1354 RYETLK------KNIAEAIDKFETQANEHEAYKQAYNEAYDWLRKAKLGAQANADCHGEQ 1407
+ L + + + + + Y E + + + D +
Sbjct: 191 WKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKH--RELPEDVGLDA 248
Query: 1408 QTTKDKADKIKQITKSLPEGQKLIDKTVALKNNVLESTGPIGKENINQEINQITLDWTNL 1467
T + + + + + + + + E I + +++ W L
Sbjct: 249 STAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQAL 308
Query: 1468 QNTLQD 1473
+
Sbjct: 309 LDACAG 314
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 54.9 bits (132), Expect = 1e-07
Identities = 43/349 (12%), Positives = 107/349 (30%), Gaps = 43/349 (12%)
Query: 451 WNDFLSSKNTLEKWIEGFQKKIEAEKDIGDCTNLDDL-EKYKALLQEVISHNSD-METLN 508
+ LE+WI + + + D ++ L E+++ ++ + + ++T+N
Sbjct: 8 LFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVN 67
Query: 509 DKCEALMEL--AAHSPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVE 566
+ L+ + + I E L +A L+ + + + +F +E+
Sbjct: 68 HLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELH-KFYHDAKEIF 126
Query: 567 AWLHKAHATVQECAGNGSKNVLKERLDTVNMVAERIPEGQHLMSVLQDTFTKALDTTPSD 626
+ H + E G V + I + LQ+ + D
Sbjct: 127 GRIQDKHKKLPEELGRDQNTV-ETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGD 185
Query: 627 QQDSLREAMTVLRDSWDRLNRDLKSTSTQLKSYIARWNELDDLYNRFNMWLSGVENKLNE 686
+ D +++ + ++W L +S +L ++ +W+ V ++
Sbjct: 186 KADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSM-VRDLMLWMEDVIRQIEA 244
Query: 687 PSPVFTEIDLNTKWQQYVNDELEWENHSQNTLQWLDNIRSDMKTLLERSKHIVDDIEKKK 746
S ++ L+ + I +I+ +
Sbjct: 245 QEKPRDV--------------------------------SSVELLMNNHQGIKAEIDARN 272
Query: 747 DDLKPIQKEAQQLSEWDS----SIVPKVSDLETRWAAVKSAWDAKHSDL 791
D + + L I K+ L + + W+ + L
Sbjct: 273 DSFTTCIELGKSLLARKHYASEEIKEKLLQLTEKRKEMIDKWEDRWEWL 321
Score = 37.6 bits (87), Expect = 0.038
Identities = 30/266 (11%), Positives = 86/266 (32%), Gaps = 13/266 (4%)
Query: 1219 TEQLQSRKQQLHNLRKTVEKLRQQNEKRAAE----SEKLGAELEEIIEALHARETAVPSS 1274
+ ++++ + ++L AA + L +++E + R + +S
Sbjct: 53 RDTGNIGQERVDTVNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAAS 112
Query: 1275 SRLHNLRKTVEKLRQQ-NEKRAAESEKLGAELEEIIEALHARETAVKTLPVLLLEVTSVD 1333
LH +++ + +K E+LG + + T + L +V +
Sbjct: 113 YELHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQ 172
Query: 1334 VELDKQRLELATKEVQPYVQRYETLKKNIAEAIDKFE------TQANEHEAYKQAYNEAY 1387
+ + + A + +R + + +D E + + +
Sbjct: 173 EDAARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLM 232
Query: 1388 DWLRKAKLGAQANADCHGEQQTTKDKADKIKQITKSLPEGQKLIDKTVALKNNVLESTGP 1447
W+ +A + + + + + + I + + L ++L
Sbjct: 233 LWMEDVIRQIEAQ-EKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLAR-KH 290
Query: 1448 IGKENINQEINQITLDWTNLQNTLQD 1473
E I +++ Q+T + + +D
Sbjct: 291 YASEEIKEKLLQLTEKRKEMIDKWED 316
Score = 32.6 bits (74), Expect = 1.3
Identities = 30/299 (10%), Positives = 96/299 (32%), Gaps = 38/299 (12%)
Query: 154 IESLLDKSKSLPQINKDQALEKAIVSVNKRYEDLVDGILKTISQLEESLDIFQQFQQLQK 213
+ L ++ + + ++ + +VN ++L++ S ++ I + L +
Sbjct: 41 VTMLQERFREF-ARDTGNIGQERVDTVNHLADELIN------SGHSDAATIAEWKDGLNE 93
Query: 214 AYQEDQKQLWDKLSSLTERELKGKLSSWCGYEESVATLLDWLKVTEKKLGDEMELKTTLD 273
A+ + + + + L K + + ++ KKL +E L +
Sbjct: 94 AWADLLELIDTRTQILAASYELHK------FYHDAKEIFGRIQDKHKKLPEE--LGRDQN 145
Query: 274 EKKAQLQVYRTIYQDATSHQQDLLQLKDKIESL------------HQPSEQSKQQLATIT 321
+ +++ T + D+ L ++ L ++ +++ +
Sbjct: 146 TVETLQRMHTTF-------EHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVL 198
Query: 322 TRHGNVLKRAQKFTEAYEGIVSIHQAYTKAVLDTQEWIDATYNAVNMWGDLTLERVSLHS 381
++L + + + V D W++ + + + S+
Sbjct: 199 EAWKSLLDACESRRVRLVDTGDKFR-FFSMVRDLMLWMEDVIRQIEAQ-EKPRDVSSVEL 256
Query: 382 NLERLKNLEKELGRIGHKTVALKN--NVLESTGPIGKENINQEINQITLDWTNLQNTLQ 438
+ + ++ E+ L + E I +++ Q+T + + +
Sbjct: 257 LMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTEKRKEMIDKWE 315
Score = 32.2 bits (73), Expect = 1.6
Identities = 35/312 (11%), Positives = 99/312 (31%), Gaps = 10/312 (3%)
Query: 797 QYSSYQNAVQDAEKWLLQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDYSSYQNAVQD 856
+ V D E+W+ + +H + + + + +D + Q+
Sbjct: 7 RLFQLNREVDDLEQWIAEREVVAGSHE--LGQDYEHVTMLQERFREFARDTGNIG---QE 61
Query: 857 AEKWLLQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDVILSPDNKLAPCFSAEE-GSP 915
+ ++ +L+ + + + L ++I + LA + +
Sbjct: 62 RVDTVNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHD 121
Query: 916 IKDKIDRLEKETKAQSDRIQDALKTLNQLIGHRKEFEVDVENVEAKLKELEVAVEGDVKT 975
K+ R++ + K + + T+ L FE D++ + ++++L+
Sbjct: 122 AKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAA 181
Query: 976 NNVLMLQELLNKYAQLNEEAGELNMMISNVSIATEHMNLNDADRLTVNDSVSSMQKRYAQ 1035
++ + ++ E L + + V D + M+ Q
Sbjct: 182 YAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQ 241
Query: 1036 LSRT-IEDRISTVNNKLQSVKRLQHKVEEAKALLQKAES---QLARPVSTQAEDISEALT 1091
+ +S+V + + + ++ +++ L +E+I E L
Sbjct: 242 IEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLL 301
Query: 1092 VYQKLLDEINSW 1103
+ E+
Sbjct: 302 QLTEKRKEMIDK 313
Score = 30.3 bits (68), Expect = 7.5
Identities = 32/307 (10%), Positives = 97/307 (31%), Gaps = 49/307 (15%)
Query: 66 DWLTGLEKDLDTLKNTTDVEAKNSLLQK---LLTEKDQAG-HKLTYLTSSGEKLYLDTAA 121
W+ E + + D E L ++ + G ++ + ++L +++
Sbjct: 20 QWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADEL-INSGH 78
Query: 122 KGREVVRQQLRALRDSKCSKTTLQEVLSHKRIIESLLDKSKSLPQINKDQALEKAIVSVN 181
+ + L + ++L +L S L + D ++ +
Sbjct: 79 SDAATIAEWKDGLNE------AWADLLELIDTRTQILAASYELHKFYHD--AKEIFGRIQ 130
Query: 182 KRYEDLVDGILKTISQLEESLDIFQQFQQ-------------------LQKAYQEDQKQL 222
+++ L + + + + +E + F+ + +
Sbjct: 131 DKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDI 190
Query: 223 WDKLSSLTER--ELKGKLSSW----------CGYEESVATLLDWLKVTEKKLGDEMELKT 270
+ + + E L S + V L+ W++ +++ + E
Sbjct: 191 QKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQI-EAQEKPR 249
Query: 271 TLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESL----HQPSEQSKQQLATITTRHGN 326
+ + + ++ I + + + +SL H SE+ K++L +T +
Sbjct: 250 DVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTEKRKE 309
Query: 327 VLKRAQK 333
++ + +
Sbjct: 310 MIDKWED 316
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 54.8 bits (132), Expect = 3e-07
Identities = 46/287 (16%), Positives = 111/287 (38%), Gaps = 24/287 (8%)
Query: 1213 SDRNEITEQLQSRKQQL----HNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARE 1268
++ E+ +L ++KQ+L H + +E+ +++++ AE +K+ ++ ++ E L E
Sbjct: 909 AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968
Query: 1269 TAVPS--------SSRLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVK 1320
A ++ + + + QN K E + L + ++ L E K
Sbjct: 969 AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028
Query: 1321 TLPVLLLEVTSVDVELDKQRLELATKEVQPYVQRYETLKKNIAEAIDKFETQANEHEAYK 1380
L L + S+ EL + RL+ K Q + L+ ++ ++ + K
Sbjct: 1029 NLTKLKNKHESMISEL-EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087
Query: 1381 QAYNEAYDWLRKAKLGAQANADCHGEQQTTKDKADKIKQITKSLPEGQKLIDKTVALKNN 1440
+K + A A E + KI+++ + + Q+ ++ A +N
Sbjct: 1088 AQLA------KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK 1141
Query: 1441 VLESTGPIGKENINQEINQITLDWTNLQNTLQDIDKHHAKCLSLWND 1487
+ K ++++E+ + + + +T + +D
Sbjct: 1142 AEKQ-----KRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 54.1 bits (130), Expect = 5e-07
Identities = 61/350 (17%), Positives = 124/350 (35%), Gaps = 27/350 (7%)
Query: 1215 RNEITEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVPSS 1274
E+LQ K++ +++L Q++ + E L +L+ E E
Sbjct: 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE---MR 915
Query: 1275 SRLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVKTLPVLLLEVTSVDV 1334
RL ++ +E++ + E R E E+ +L+ + + + ++ + E +
Sbjct: 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ-LEEEEAARQKL 974
Query: 1335 ELDKQRLELATKEVQPYVQRYETLKKNIAEAIDKFETQANEHEAYKQAYNEAYDWLRKAK 1394
+L+K + K+++ + E + + E + ++ E L K K
Sbjct: 975 QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLK 1034
Query: 1395 LGAQANADCHGEQQTTKDKADKIKQITKSLPEGQKLIDKTVALKNNVLESTGPIGKENIN 1454
+ + + ++K+ KS E +K+ K +++ E +
Sbjct: 1035 ---------NKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQI-----AELQ 1080
Query: 1455 QEINQITLDWTNLQNTLQDIDKHHAKCLSLWNDFLSSKNTLEKWIEGFQKKIESEKDIGD 1514
+I ++ + LQ S N+ L LE I Q+ +ESEK
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEK---- 1136
Query: 1515 CTNLDDLEKYKALLQEGLHKEADNKKVLIDSFNKGIIGMTELESEEVKDL 1564
+ EK K L E E + K ++ EL + KD
Sbjct: 1137 -AARNKAEKQKRDLSE----ELEALKTELEDTLDTTATQQELRGSDYKDD 1181
Score = 49.4 bits (118), Expect = 1e-05
Identities = 35/235 (14%), Positives = 91/235 (38%), Gaps = 32/235 (13%)
Query: 917 KDKIDRLEKETKAQSDRIQDALKTLNQLIGHRKEFEVDVENVEAKLKELEVAVEGDVKTN 976
+++ +L+ E K ++ D + L + R++ +++ + K+K++E + N
Sbjct: 940 EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN 999
Query: 977 NVLM----------------LQELLNKYAQLNEEAGELNMMISNV--SIATEHMNLNDAD 1018
N L L E K L + + MIS + + E + + +
Sbjct: 1000 NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELE 1059
Query: 1019 RL--TVNDSVSSMQKRYAQLSRTIEDRISTVNNKLQSVKRLQHKVEEAKALLQKAESQLA 1076
++ + S + ++ A+L I + + + K + ++ ++E+ + A ++
Sbjct: 1060 KIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIR 1119
Query: 1077 RPVSTQAEDISEALTVYQKLLDEINSWKNSQSDEDLVHLADSIKPLDEVVERIEN 1131
+ + D+ E L + ++ K S+E L+ + +E+
Sbjct: 1120 E-LESHISDLQEDLESEKAARNKAEKQKRDLSEE-----------LEALKTELED 1162
Score = 49.1 bits (117), Expect = 2e-05
Identities = 59/325 (18%), Positives = 118/325 (36%), Gaps = 40/325 (12%)
Query: 1572 LQVELNALLQNIEAEINKVANAAQERKAMQDKISKLQSWLKQYIDYSGNKQALQSRLDKV 1631
L E N L + ++AE A A + R + K +L+ L + +++R+++
Sbjct: 890 LCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHE----------MEARIEEE 939
Query: 1632 NEIQESFPEISTKLQTLSDHIENSSRKLPSRTNEAMYRDLANLRYDFEKCVSSLSDVKQG 1691
E + K+Q + + +L + R + + +
Sbjct: 940 EERSQQLQAEKKKMQ---QQMLDLEEQL---------EEEEAARQKLQLEKVTADGKIKK 987
Query: 1692 LESRLVQWNEYETSLGKLITWLNDTENVLKNFTLQPTLNEKKQQRELKGKLSSWCGYEES 1751
+E ++ + L K L + + L L + K +LK K E
Sbjct: 988 MEDDILIMEDQNNKLTKERKLLEERVSDLTT-NLAEEEEKAKNLTKLKNKH------ESM 1040
Query: 1752 VATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESLH 1811
++ L LK EK + ++K L+ + + L + Q + +LK ++
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLH------EQIAELQAQIAELKAQLAKKE 1094
Query: 1812 QPSEQSKQQLATITTRHGNVLKRAQKKIEAEKDIGDCTNLDDLEKYKALLQEVISHNSDM 1871
+ + + +L T++ N LK K E E I D +DLE KA + D+
Sbjct: 1095 EELQAALARLEDETSQKNNALK---KIRELESHISDLQ--EDLESEKAARNKAEKQKRDL 1149
Query: 1872 ETLNDKCEALMELAAHSPIREETLR 1896
+ + +E + ++ LR
Sbjct: 1150 SEELEALKTELEDTLDTTATQQELR 1174
Score = 44.8 bits (106), Expect = 4e-04
Identities = 49/349 (14%), Positives = 118/349 (33%), Gaps = 44/349 (12%)
Query: 1771 ELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESLHQPSEQSKQQLATITTRHGN 1830
L K + Q ++ L + K+ ++ E+ + +
Sbjct: 861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ------EKLQAETELYAEAEEM 914
Query: 1831 VLKRAQKKIEAEKDIGDCTN-LDDLEKYKALLQEVISHNSDMETLNDKCEALMELAAHSP 1889
++ A KK E E+ + + +++ E+ LQ + + + + L E
Sbjct: 915 RVRLAAKKQELEEILHEMEARIEEEEERSQQLQA------EKKKMQQQMLDLEEQ----- 963
Query: 1890 IREETLRLQAL---YAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQEC 1946
+ EE Q L ++ + + + +++ +E + + E
Sbjct: 964 LEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE 1023
Query: 1947 DELEAGIKEEQKNIETQYLQWNSFRETLAQMTAWLDSVEKNIKQEIATPWTTTQELRSKL 2006
+E + + + E+ + + + L+ +++ ++ E + EL++++
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083
Query: 2007 LKLKEILKKCEKGVGDHEAFVDKYEECSQKLAQVEAKYAKLIEPETSYEELQKRQGQLTA 2066
+LK L K E EE LA++E + ++ EL+ L
Sbjct: 1084 AELKAQLAKKE-------------EELQAALARLEDETSQKNNALKKIRELESHISDLQE 1130
Query: 2067 LL-TEKVDMDVLLNACVDLCDKVYESTSEPGHEPLRVQMEKLQQAVEAL 2114
L +EK + DL +++ E L+ ++E
Sbjct: 1131 DLESEKAARNKAEKQKRDLSEEL---------EALKTELEDTLDTTATQ 1170
Score = 39.4 bits (92), Expect = 0.014
Identities = 41/281 (14%), Positives = 111/281 (39%), Gaps = 32/281 (11%)
Query: 124 REVVRQQLRALRDSKCSKTTLQEVLS-----HKRIIESLLDKSKSLPQINKDQALEKAIV 178
+ +++++L+A + ++ L+ + I+ + + + + ++ EK
Sbjct: 894 KNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEK--- 950
Query: 179 SVNKRYEDLVDGILKTISQLEESLDIFQQFQQLQKAYQEDQKQLWDKLSSLTER--ELKG 236
K+ + + + + + + E + Q+ Q + K++ D + + ++ +L
Sbjct: 951 ---KKMQQQMLDLEEQLEEEEAAR---QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK 1004
Query: 237 KLSSWCGYEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDL 296
+ EE V+ L L E+K + +LK + ++L+ + +Q+L
Sbjct: 1005 ERKLL---EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELE---VRLKKEEKSRQEL 1058
Query: 297 LQLKDKIESLHQPSEQSKQQLATITTRHGNVLKRAQKFTEA----YEGIVSIHQAYTKAV 352
++K K+E + +L L + ++ +A E S K +
Sbjct: 1059 EKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKI 1118
Query: 353 LDTQEWIDATYNAVNMWGDLTLERVSLHSNLERLKNLEKEL 393
+ + I ++ DL E+ + + ++ ++L +EL
Sbjct: 1119 RELESHIS------DLQEDLESEKAARNKAEKQKRDLSEEL 1153
Score = 37.9 bits (88), Expect = 0.052
Identities = 46/354 (12%), Positives = 124/354 (35%), Gaps = 42/354 (11%)
Query: 182 KRYEDLVDGILKTISQLEESLDIFQQFQQLQKAYQEDQKQLWDKLSSLTE-----RELKG 236
+ + + + +T + +++ ++ +Q E++ L +KL + TE E++
Sbjct: 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRV 916
Query: 237 KLSSWCG-YEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQD 295
+L++ EE + + ++ E++ K + ++ L+ ++ + +Q
Sbjct: 917 RLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLE---EQLEEEEAARQK 973
Query: 296 LLQLKDKIESLHQPSEQSKQQLATITTRHGNVLKRAQKFTEAYEGIVSIHQAYTKAVLDT 355
L K + ++ + + + ++ + K + E + + + +
Sbjct: 974 LQLEKVTAD---GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030
Query: 356 QEWIDATYNAVNMWGDLTLERVSLHSNLERLKNLEKELGRIGHKTVALKNNVLESTGPIG 415
+ + L L++ + +EL + LE
Sbjct: 1031 TKLKNK----------HESMISELEVRLKKEEKSRQELEK--------IKRKLEGE---- 1068
Query: 416 KENINQEINQITLDWTNLQNTLQVIDKHHAKCLSIWNDFLSSKNTLEKWIEGFQKKIEAE 475
+++++I ++ L+ L ++ L+ D S KN K I + I
Sbjct: 1069 SSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDL 1128
Query: 476 KDIGDCTNLDDLEKYKALLQEVISHNSDMETLNDKCEALMELAAHSPIREETLR 529
++ DLE KA + D+ + + +E + ++ LR
Sbjct: 1129 QE--------DLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELR 1174
Score = 34.8 bits (80), Expect = 0.46
Identities = 48/253 (18%), Positives = 95/253 (37%), Gaps = 35/253 (13%)
Query: 71 LEKDLDTLKNTTDVEAKNSLLQKLLTEKDQAGHKLTYLTSSGEKLYLDTAAKGREVVRQQ 130
+++ + L+ +E + + QKL EK A K+ + + +E +
Sbjct: 953 MQQQMLDLEE--QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE 1010
Query: 131 LRALRDSKCSKTTLQEVLSHKRIIESLLDKSKSLPQINKDQALEKAIVSVNKRYEDLVDG 190
R T L E + + L +K +S LE + K ++L
Sbjct: 1011 ERV----SDLTTNLAEEEEKAKNLTKLKNKHES-----MISELEVRLKKEEKSRQEL--- 1058
Query: 191 ILKTISQLEESL-DIFQQFQQLQKAYQEDQKQLWDKLSSLTERELKGKLSSWCGYEESVA 249
K +LE D+ +Q +LQ E + QL K E EL+ L+ E+ +
Sbjct: 1059 -EKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK-----EEELQAALAR---LEDETS 1109
Query: 250 TLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQ----LKDKIES 305
+ LK + + EL++ + + + L+ + A ++DL + LK ++E
Sbjct: 1110 QKNNALK--KIR-----ELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162
Query: 306 LHQPSEQSKQQLA 318
+ ++
Sbjct: 1163 TLDTTATQQELRG 1175
Score = 34.0 bits (78), Expect = 0.70
Identities = 30/199 (15%), Positives = 68/199 (34%), Gaps = 19/199 (9%)
Query: 1965 LQWNSFRETLAQMTA--WLDSVEKNIKQEIATPWTTTQELRSKLLKLKEILKKCEKGVGD 2022
+Q+N R + ++ Q +L + KE +K E + +
Sbjct: 824 IQYN-VRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKE 882
Query: 2023 HEA-FVDKYEECSQKLAQVEAKYAKLIEPETSYEELQKRQGQLTALLTEKVDMDVLLNAC 2081
E EE + +++A+ E E L ++ +L +L E
Sbjct: 883 LEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHE----------- 931
Query: 2082 VDLCDKVYESTSEPGHEPLRVQMEKLQQAVEALYDKITVTESLILSQVEAKYAKLIEPET 2141
+ ++ E L+ + +K+QQ + L +++ E+ K + +
Sbjct: 932 --MEARIEEEEERSQQ--LQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKK 987
Query: 2142 SYEELQKRQGQLTALLAEK 2160
+++ + Q L E+
Sbjct: 988 MEDDILIMEDQNNKLTKER 1006
Score = 32.5 bits (74), Expect = 2.2
Identities = 46/293 (15%), Positives = 107/293 (36%), Gaps = 32/293 (10%)
Query: 469 QKKIEAEKDIGDCTNLDDLEKYKALLQEVISHNSDMETLNDKCEALMELAAHSPIREETL 528
Q+K++AE ++ + E L + + + + E E + ++ E
Sbjct: 898 QEKLQAETEL----YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQ--LQAEKK 951
Query: 529 RLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQECAGNGSKNVL 588
++Q L ++ + +K ++ K +++E + + + +L
Sbjct: 952 KMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKL--TKERKLL 1009
Query: 589 KERLDTVNMVAERIPEGQHLMSVLQDTFTKALDTTPSDQQDSLREAMTVLRDSWDRLNRD 648
+ER+ + + + E + L K ++ S+ + L + R +++ R
Sbjct: 1010 EERV---SDLTTNLAEEEEKAKNLTKLKNK-HESMISELEVRL-KKEEKSRQELEKIKRK 1064
Query: 649 LKSTSTQLKSYIARWNELDDLYNRFNMWLSGVENKLNEPSPVFTEIDLNTKWQQYVNDEL 708
L+ + + EL L+ E +L + DE
Sbjct: 1065 LE---GESSDLHEQIAELQAQIAELKAQLAKKEEELQA-------------ALARLEDET 1108
Query: 709 EWENHSQNTLQWLDNIRSDMKTLLERSKHIVDDIEKKKDDLKPIQKEAQQLSE 761
+N++ ++ L++ SD++ LE K + EK+K DL +E + L
Sbjct: 1109 SQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDL---SEELEALKT 1158
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 52.2 bits (124), Expect = 2e-06
Identities = 55/456 (12%), Positives = 135/456 (29%), Gaps = 29/456 (6%)
Query: 415 GKENINQEINQITLDWTNLQNTLQVIDKHHAKCLSIWNDFLSSKNTLEKWIEGFQKKIEA 474
G +NQE ++ ++ L + L + L + ++K +E F+
Sbjct: 1 GSSAVNQENERLMEEYERLASELLEWIRRTIPWLENR-TPEKTMQAMQKKLEDFRDYRRK 59
Query: 475 EKDIGDCTNLDDLEKYKALLQEVISHNSDMETLNDKCEALMELAAHSPIREETLRLQALY 534
K +++ L + + + N E S I RL+
Sbjct: 60 HKPPK-------VQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAE 112
Query: 535 AALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQECAGNGSKNVLKERLDT 594
+ + ++E+ +F K E W + + + + L
Sbjct: 113 KGYEEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLR 172
Query: 595 VNMVAERIPEGQHLMSVLQDTFTKALDTTPSDQQDSLREAMTVLRDSWDRLNRDLKSTST 654
+ E + L+ ++ + + D WDRL +
Sbjct: 173 KHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRRE 232
Query: 655 QLKSYIARWNELDDLYNRFNMWLSGVENKLNEPSPVFTEIDLNTKWQQYVNDELEWENHS 714
L+ +D L+ F + N + ++ +
Sbjct: 233 ALERMEKLLETIDQLHLEFAKRAAPFNNWMEG--------------AMEDLQDMFIVHSI 278
Query: 715 QNTLQWLDNIRSDMKTLLERSKHIVDDIEKKKDDLKPIQKEAQQLSEWDSSIVPKVSDLE 774
+ + TL E + + + K IQ ++S + + +L
Sbjct: 279 EEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELR 338
Query: 775 TRWAAVKSAWDAKHSDLSSEIAQYSSYQNAVQ-------DAEKWLLQISFQLMAHNSLYI 827
T+W VK + L E+A+ + + + W+ ++ +
Sbjct: 339 TKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQIT 398
Query: 828 NNRQQTLEQIQHHEKLLQDYSSYQNAVQDAEKWLLQ 863
+ + Q++ +E + +Y + + ++ + + +
Sbjct: 399 GALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQE 434
Score = 51.0 bits (121), Expect = 3e-06
Identities = 57/462 (12%), Positives = 158/462 (34%), Gaps = 33/462 (7%)
Query: 1030 QKRYAQLSRTIEDRISTVNNK--LQSVKRLQHKVEEAKALLQKAESQLARPVSTQAEDIS 1087
++ ++L I I + N+ ++++ +Q K+E+ + +K + + + +
Sbjct: 17 ERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFN 76
Query: 1088 EALTVYQKLLDEINSWKNSQSDEDLVHLADSIKPLDEVVERIENHAVPKLKSLLLLREQF 1147
T + + D+ ++ ++ E + + +L+ L L E+F
Sbjct: 77 TLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKF 136
Query: 1148 TTLIMQIVGFITETTARVGEVDGNS---ATVQEKIDKYDKIIADIQEYEAILATASDKGD 1204
+ + + D S V+ + K++ +D+ ++ + +
Sbjct: 137 RQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQ 196
Query: 1205 QLSSDG------------TISDR-NEITEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESE 1251
+L+ I D+ + + Q R++ L + K +E + Q + + A +
Sbjct: 197 ELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAA 256
Query: 1252 KLGAELEEIIEALHARETAVPSSSRLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEA 1311
+E +E L + + ++ L +E+ A + E + I+
Sbjct: 257 PFNNWMEGAMEDLQDMFIV--------HSIEEIQSLITAHEQFKATLPEADGERQSIMAI 308
Query: 1312 LHARETAVKTLPVLLLEVTSVDVELDKQRLELATKEVQPYVQRYETLKKNIAEAIDKFET 1371
+ E +++ + + S ++ + Q +++ E + +
Sbjct: 309 QNEVEKVIQSYNIRI----SSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHA 364
Query: 1372 QANEHEAYKQAYNEAYDWLRKAKLGAQANADCHGEQQTTKDKADKIKQITKSLPEGQKLI 1431
+ N W++ + +D+ +++KQ ++ + I
Sbjct: 365 NERLRRQFAAQANAIGPWIQNKM--EEIARSSIQITGALEDQMNQLKQYEHNIINYKNNI 422
Query: 1432 DKTVALKNNVLESTGPIGKENINQEINQITLDWTNLQNTLQD 1473
DK + E+ ++ N + I + W L T+
Sbjct: 423 DKLEGDHQLIQEA-LVFDNKHTNYTMEHIRVGWELLLTTIAR 463
Score = 50.3 bits (119), Expect = 6e-06
Identities = 52/388 (13%), Positives = 133/388 (34%), Gaps = 30/388 (7%)
Query: 192 LKTISQLEESLDIFQQFQQLQKAYQ--EDQKQLWDKLSSLTERELKGKLSSWCGYEESVA 249
L+ ++ + + A+Q E ++ +++ R L+ + + +
Sbjct: 82 LRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQKAS 141
Query: 250 TLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESL--- 306
T W E+ L + +L E +A L+ + D +HQ + Q+ + L
Sbjct: 142 THETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNEL 201
Query: 307 -HQPSEQSKQQLATITTRHGNVLKRAQ-------KFTEAYEGIVSIHQAYTKAVLDTQEW 358
+ + + I + + Q + + E I +H + K W
Sbjct: 202 DYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNW 261
Query: 359 IDATYNAVN--MWGDLTLERVSLHSNLERLKNLEKELGRIGHKTVALKNNVLE------S 410
++ + E SL + E+ K E +A++N V +
Sbjct: 262 MEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNI 321
Query: 411 TGPIGKENINQEINQITLDWTNLQNTLQVIDKHHAKCLS-------IWNDFLSSKNTLEK 463
++++ W ++ + + D+ + L+ + F + N +
Sbjct: 322 RISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGP 381
Query: 464 WIEGFQKKIEAEKDIGDCTNLDDLEKYKALLQEVISHNSDMETLNDKCEALMELA--AHS 521
WI+ ++I D + + K +I++ ++++ L + + E +
Sbjct: 382 WIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNK 441
Query: 522 PIREETLRLQALYAALVTSVQGLVSQVE 549
++ + L+T++ +++VE
Sbjct: 442 HTNYTMEHIRVGWELLLTTIARTINEVE 469
Score = 48.0 bits (113), Expect = 3e-05
Identities = 52/460 (11%), Positives = 143/460 (31%), Gaps = 29/460 (6%)
Query: 1484 LWNDFLSSKNTLEKWIEGFQKKIESEKDIGDCTN----LDDLEKYKALLQEGLHKEADNK 1539
L ++ + L +WI +E+ L+D Y+ + +E
Sbjct: 12 LMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQL 71
Query: 1540 KVLIDSFNKGIIGMTELESEEVKDLIQVGVHGLQVELNALLQN----IEAEINKVANAAQ 1595
++ ++ + + + + G L + + EI ++
Sbjct: 72 EINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEH 131
Query: 1596 ERKAMQDKISKLQSWLKQYIDYSGNKQALQSRLDKVNEIQESFPEISTKLQTLSDHIEN- 1654
+ + K S ++W K + L +V + + L D +E
Sbjct: 132 LAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQI 191
Query: 1655 ------------SSRKLPSRTNEAMYRDLANLRYDFEKCVSSLSDVKQGLESRLVQWNEY 1702
+ + + L +K +L +++ LE+ E+
Sbjct: 192 AAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEF 251
Query: 1703 ETSLGKLITWLNDTENVLKNFTLQPTLNEKKQQRE----LKGKLSSWCGYEESVATLLDW 1758
W+ L++ + ++ E + K L G +S+ + +
Sbjct: 252 AKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNE 311
Query: 1759 LKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESLHQPSEQSK 1818
++ + + ++ + RT + Q + + +E+ +
Sbjct: 312 VEKVIQSYNIRIS--SSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLR 369
Query: 1819 QQLATITTRHGNVLKRAQKKIEAEKDIGDCTNLDDLEKYKALLQEVISHNSDMETLNDKC 1878
+Q A G ++ ++I D + + K +I++ ++++ L
Sbjct: 370 RQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDH 429
Query: 1879 EALMELA--AHSPIREETLRLQALYAALVTSVQGLVSQVE 1916
+ + E + ++ + L+T++ +++VE
Sbjct: 430 QLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVE 469
Score = 45.3 bits (106), Expect = 2e-04
Identities = 53/401 (13%), Positives = 129/401 (32%), Gaps = 37/401 (9%)
Query: 661 ARWNELDDLYNRFNMWLSGVENKLNEPSPVFTEIDLNTKWQQYVNDELEWENHSQNTLQW 720
W L+ + WL +L L K++Q + W + L
Sbjct: 103 GAWQRLEQAEKGYEEWLLNEIRRLERLE------HLAEKFRQKASTHETWAYGKEQILLQ 156
Query: 721 LDNIRSDM---KTLLERSKHIVDDIEKKKDDLKPIQKEAQQLSEWD----SSIVPKVSDL 773
D + + + LL + + D+ +D ++ I AQ+L+E D ++ + +
Sbjct: 157 KDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKI 216
Query: 774 ETRWAAVKSAWDAKHSDLSSEIAQYSSYQNAVQDAEKWLLQISFQLMAHNSLYINNRQQT 833
+W + + + L + + K
Sbjct: 217 CDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRA------------------APF 258
Query: 834 LEQIQHHEKLLQDYSSYQNAVQDAEKWLLQISFQLMAHNSLYINNRQQTLEQIQHHEKLL 893
++ + LQD +++++ + L+ Q A RQ + EK++
Sbjct: 259 NNWMEGAMEDLQD-MFIVHSIEEIQS-LITAHEQFKATLPEADGERQSIMAIQNEVEKVI 316
Query: 894 QDVILSPDNKLAPCFSAEEGSPIKDKIDRLEKETKAQSDRIQDALKTLNQLIGHRKEFEV 953
Q + + +S ++ K D++++ + +Q+ L + R++F
Sbjct: 317 QS--YNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAA 374
Query: 954 DVENVEAKLKELEVAVEGDVKTNNVLMLQELLNKYAQLNEEAGELNMMISNVSIATEHM- 1012
+ ++ + L++ +N+ Q I + + +
Sbjct: 375 QANAIGPWIQNKMEEIARSS-IQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQ 433
Query: 1013 NLNDADRLTVNDSVSSMQKRYAQLSRTIEDRISTVNNKLQS 1053
D N ++ ++ + L TI I+ V ++ +
Sbjct: 434 EALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQILT 474
Score = 42.6 bits (99), Expect = 0.001
Identities = 56/423 (13%), Positives = 129/423 (30%), Gaps = 26/423 (6%)
Query: 1184 KIIADIQEYEAILATASDKGDQLSSDGTISDRNEITEQL----QSRKQQLHNLRKTVEKL 1239
++ + + L ++ S +SD ++L + ++ L N + +E+L
Sbjct: 70 QLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERL 129
Query: 1240 RQQNEKRAAESEKLGAELEEIIEALHARETAVPSSSRLHNLRKTVEKLRQQNEKRAAESE 1299
EK ++ + L ++ S + + L + E E
Sbjct: 130 EHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVE 189
Query: 1300 KLGAELEEIIEALHARETAVKTLPVLL---LEVTSVDVELDKQRLELATKEVQPYVQRYE 1356
++ A +E+ E + V + + + ++ LE K ++ Q +
Sbjct: 190 QIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHL 249
Query: 1357 TLKKNIAEAIDKFETQAN--EHEAYKQAYNEAYDWLRKAKLGAQANADCHGEQQTTKDKA 1414
K A + E + + E + + + GE+Q+
Sbjct: 250 EFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQ 309
Query: 1415 DKIKQITKSLPEGQKLIDKTVALKNNVLESTGPIGKENINQEINQITLDWTNLQNTLQDI 1474
++++++ +S + + + L + +++ +LQ+
Sbjct: 310 NEVEKVIQSYNIRISSSNPYSTVTMDELR-----------TKWDKVKQLVPIRDQSLQEE 358
Query: 1475 DKHHAKCLSLWNDFLSSKNTLEKWIEGFQKKIESEKDIGDCTNLDDLEKYKALLQEGLHK 1534
L F + N + WI+ ++I D + + K
Sbjct: 359 LARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHN---- 414
Query: 1535 EADNKKVLIDSFNKGIIGMTELESEEVKDLIQVGVHGLQVELNALLQNIEAEINKVANAA 1594
N K ID + E + + ++V LL I IN+V
Sbjct: 415 -IINYKNNIDKLEGDHQLIQEALVFD-NKHTNYTMEHIRVGWELLLTTIARTINEVETQI 472
Query: 1595 QER 1597
R
Sbjct: 473 LTR 475
Score = 37.2 bits (85), Expect = 0.064
Identities = 41/399 (10%), Positives = 111/399 (27%), Gaps = 39/399 (9%)
Query: 1695 RLVQWNEYETSLGKLITWLNDTENVLKNFTLQPTLNEKKQQRELKGKLSSWCGYEESVAT 1754
R+ + S GK+++ + L+ + R L+ + + +T
Sbjct: 83 RISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQKAST 142
Query: 1755 LLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESL---- 1810
W E+ L + +L E +A L+ + D +HQ + Q+ + L
Sbjct: 143 HETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELD 202
Query: 1811 HQPSEQSKQQLATITTRHGNVLKRAQKKIEAEKDIGD---------CTNLDDLEKYKALL 1861
+ + + I + + QK+ EA + + + +
Sbjct: 203 YHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWM 262
Query: 1862 QEVISHNSDMETLNDKCEALMELAAHSPIREETLRLQALYAALVTSVQGLVSQVEKNLSD 1921
+ + DM ++ E + AH + +++ + ++
Sbjct: 263 EGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIR 322
Query: 1922 QTEFLAKKEEVEAWLHKAHATVQEC-DELEAGIKEEQKNIETQYLQWNSFRETLAQMTAW 1980
+ L V++ + ++EE F + W
Sbjct: 323 ISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPW 382
Query: 1981 LDSVEKNIKQEIATPWTTTQELRSKLLKLKEILKKCEKGVGDHEAFVDKYEECSQKLAQV 2040
+ + + I + ++ ++ + + + ++
Sbjct: 383 IQNKMEEIARSSIQITGALEDQMNQ-----------------LKQYEHNIINYKNNIDKL 425
Query: 2041 EAKYAKLIEP--------ETSYEELQKRQGQLTALLTEK 2071
E + + E + E ++ L +
Sbjct: 426 EGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIART 464
Score = 34.1 bits (77), Expect = 0.52
Identities = 42/351 (11%), Positives = 111/351 (31%), Gaps = 17/351 (4%)
Query: 1829 GNVLKRAQKKIEAEKDIGDCTNLDDLEKYKALLQEVISHNSDMETLNDKCEALMELAAHS 1888
++ QKK+E +D +++ L + + + N E S
Sbjct: 40 EKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVS 99
Query: 1889 PIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQECDE 1948
I RL+ + + ++E+ +F K E W + + + D
Sbjct: 100 DIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDY 159
Query: 1949 LE---AGIKEEQKNIETQYLQWNSFRETLAQMTAWLDSVEKNIKQEIATPWTTTQELRSK 2005
++ + E + ++ + Q+ A + + + Q++ +
Sbjct: 160 ESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQ 219
Query: 2006 LLKLKEILKKCEKGVGDHEAFVDKYEECSQKLAQVEAKYAKLIEP-------------ET 2052
+L + +K + + E ++ ++ + A+ A + +E
Sbjct: 220 WDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIE 279
Query: 2053 SYEELQKRQGQLTALLTEKVDMDVLLNACVDLCDKVYESTSEPGHEPLRVQMEKLQQAVE 2112
+ L Q A L E + A + +KV +S + + + +
Sbjct: 280 EIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDE-LR 338
Query: 2113 ALYDKITVTESLILSQVEAKYAKLIEPETSYEELQKRQGQLTALLAEKVDM 2163
+DK+ + ++ + A+ E + + + + K++
Sbjct: 339 TKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEE 389
Score = 32.2 bits (72), Expect = 2.0
Identities = 54/460 (11%), Positives = 155/460 (33%), Gaps = 34/460 (7%)
Query: 1575 ELNALLQNIEAEINKVANAAQERKAMQDKISKLQSWLKQYIDYSGNKQALQSRLDKVNEI 1634
+ LL+ I I + N E + +Q L+ + DY + + + + ++
Sbjct: 19 LASELLEWIRRTIPWLENRTPE-----KTMQAMQKKLEDFRDYRRKHKPPKVQ--EKCQL 71
Query: 1635 QESFPEISTKLQTLSDHIENSSRKLPSRTNEAMYRDLANLRYDFEKCVSSLSDVKQGLES 1694
+ +F + TKL+ + S ++ L +E+ L + + LE
Sbjct: 72 EINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEW---LLNEIRRLER 128
Query: 1695 RLVQWNEYETSLGKLITWLNDTENVLKN-----FTLQPTLNEKKQQRELKGKLSSWCGYE 1749
++ TW E +L +L ++ + L++
Sbjct: 129 LEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRV 188
Query: 1750 ESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIES 1809
E +A + L E D + + + Q + ++ L +++ +E+
Sbjct: 189 EQIAAIAQELN--ELDYHDAVNVNDRCQKICDQWD---RLGTLTQKRREALERMEKLLET 243
Query: 1810 LHQPSEQSKQQLATITTRHGNVLKRAQKKIEAEKDIGDCTNLDDLEKYKALLQEVISHNS 1869
+ Q + ++ A ++ Q + + E++KA L E
Sbjct: 244 IDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQ 303
Query: 1870 DMETLNDKCEALMELAAHSP-------------IREETLRLQALYAALVTSVQGLVSQVE 1916
+ + ++ E +++ +R + +++ L S+Q +++
Sbjct: 304 SIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQH 363
Query: 1917 KNLSDQTEFLAKKEEVEAWLHKAHATVQECD-ELEAGIKEEQKNIETQYLQWNSFRETLA 1975
N + +F A+ + W+ + ++ ++++ ++ +++ +
Sbjct: 364 ANERLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNID 423
Query: 1976 QMTAWLDSVEKNIKQEIATPWTTTQELRSKLLKLKEILKK 2015
++ +++ + + T + +R L + +
Sbjct: 424 KLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIAR 463
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome;
2.95A {Homo sapiens}
Length = 450
Score = 50.1 bits (119), Expect = 6e-06
Identities = 40/296 (13%), Positives = 112/296 (37%), Gaps = 23/296 (7%)
Query: 247 SVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESL 306
+ L W++ ++ D + L + + +R I+ ++ L ++K +
Sbjct: 10 VTSECLGWMRQQRAEM-DMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKADLREK 68
Query: 307 HQPS--EQSKQQLATITTRHGNVLKRAQKFTEAYEGIVSIHQAYTKAVLDTQEWIDATYN 364
E+ + L + + L++ Q +A ++ E + Y+
Sbjct: 69 SAIYQLEEEYENLLKASFERMDHLRQLQNIIQATSR--------EIMWINDCEEEELLYD 120
Query: 365 AVNMWGDLTLERVSLHSNLERLKNLEKELGRIGHKTVALKNNVLESTGPIGKENINQEIN 424
+ ++ ++ + + +L+ EKEL + +++ L + I ++
Sbjct: 121 WSDKNTNIAQKQEAFSIRMSQLEVKEKEL-----NKLKQESDQLVLNQHPASDKIEAYMD 175
Query: 425 QITLDWTNLQNTLQVIDKHHAKCLSIWNDFLSSKNTLEKWIEGFQKKIEAEKDIGDCTNL 484
+ W+ + + ID H + + + F + E +++G Q I + L
Sbjct: 176 TLQTQWSWILQITKCIDVHLKENAAYFQ-FFEEAQSTEAYLKGLQDSIRKKYPCDKNMPL 234
Query: 485 DDLE----KYKALLQEVISHNSDMETLNDKCEALMELAAHSP--IREETLRLQALY 534
L + + ++++ + ++ L +K + +++L +P + + L+AL
Sbjct: 235 QHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQLKPRNPDYRSNKPIILRALC 290
Score = 38.5 bits (89), Expect = 0.022
Identities = 38/289 (13%), Positives = 103/289 (35%), Gaps = 32/289 (11%)
Query: 1751 SVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESL 1810
+ L W++ ++ D + L + + +R I+ ++ L ++K
Sbjct: 10 VTSECLGWMRQQRAEM-DMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKA----- 63
Query: 1811 HQPSEQSKQQLATITTRHGNVLKRAQKKIEAEKDIGDCTNLDDLEKYKALLQEV---ISH 1867
+ K + + + N+LK + ++++ +L L+ I+
Sbjct: 64 ---DLREKSAIYQLEEEYENLLKASFERMD---------HLRQLQNIIQATSREIMWIND 111
Query: 1868 NSDMETLNDKCEALMELAAHSPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLA 1927
+ E L D + +A +E + + L + ++ L +
Sbjct: 112 CEEEELLYDWSDKNTNIAQ---KQEAFSIRMSQLEVKEKELNKLKQESDQ-LVLNQHPAS 167
Query: 1928 KKEEVEAWLHKAHATVQECDELEAGIKEEQKNIETQYLQWNSFRETLAQMTAWLDSVEKN 1987
+++EA++ + + K +++ + + F E A+L ++ +
Sbjct: 168 --DKIEAYMDTLQ---TQWSWILQITKCIDVHLK-ENAAYFQFFEEAQSTEAYLKGLQDS 221
Query: 1988 I-KQEIATPWTTTQELRSKLLKLKEILKKCEKGVGDHEAFVDKYEECSQ 2035
I K+ Q L ++ +L++ +K + + V+K ++ Q
Sbjct: 222 IRKKYPCDKNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQ 270
Score = 36.2 bits (83), Expect = 0.12
Identities = 37/298 (12%), Positives = 103/298 (34%), Gaps = 22/298 (7%)
Query: 346 QAYTKAVLDTQEWIDATYNAVNMWGDLTLERVSLHSNLERLKNLEKELGRIGHKTVALKN 405
+ + W+ ++M ++ S+ ++ + + +G + +K
Sbjct: 5 EFTKHVTSECLGWMRQQRAEMDM-VAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKA 63
Query: 406 NVLESTGPIGKENINQEINQITLDWTNLQNTLQVIDKHHAKCLSIWNDFLSSKNTLEKWI 465
+ I Q+ ++ NL H L + + + + WI
Sbjct: 64 D----------LREKSAIYQLEEEYENLLKASFERMDH----LRQLQNIIQATSREIMWI 109
Query: 466 EGFQKKIEAEKDIGDCTNLDDL-EKYKALLQEVISHNSDMETLNDKCEALMELA--AHSP 522
+++ TN+ E + + ++ ++ L + + L+ A
Sbjct: 110 NDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDK 169
Query: 523 IREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQE---C 579
I LQ ++ ++ + + +++N + +F + + EA+L ++++ C
Sbjct: 170 IEAYMDTLQTQWSWILQITKCIDVHLKENAAYF-QFFEEAQSTEAYLKGLQDSIRKKYPC 228
Query: 580 AGNGSKNVLKERLDTVNMVAERIPEGQHLMSVLQDTFTKALDTTPSDQQDSLREAMTV 637
N L E++ + E+I E + + L + K + P + + + +
Sbjct: 229 DKNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQLKPRNPDYRSNKPIIL 286
Score = 33.9 bits (77), Expect = 0.60
Identities = 33/263 (12%), Positives = 88/263 (33%), Gaps = 26/263 (9%)
Query: 65 DDWLTGLEKDLDTLKNTTDVEAKNSLLQK---LLTEKDQAGHKLTYLTSSGEKLY----- 116
W+ ++D + D+ + + + +L + + +
Sbjct: 15 LGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKADLREKSAIYQL 74
Query: 117 ------LDTAAKGREVVRQQLRALRDSKCSKTTLQEVLSHKRIIESLLDKSKSLPQINKD 170
L A+ R LR L++ + + ++ E L D S I +
Sbjct: 75 EEEYENLLKASFER---MDHLRQLQNIIQATSREIMWINDCEEEELLYDWSDKNTNIAQK 131
Query: 171 QALEKAIVSVNKRYEDLVDGILKTISQLEESLDIFQQFQQLQ-KAYQEDQKQLWDKLSSL 229
Q +S + E ++ + + QL + Q + +AY + + W + +
Sbjct: 132 QEAFSIRMSQLEVKEKELNKLKQESDQLVLN----QHPASDKIEAYMDTLQTQWSWILQI 187
Query: 230 TERELK--GKLSSWCGYEESVATLLDWLKVTEKKLGDEM--ELKTTLDEKKAQLQVYRTI 285
T+ + +++ + E + +LK + + + + L Q++
Sbjct: 188 TKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKE 247
Query: 286 YQDATSHQQDLLQLKDKIESLHQ 308
+ +++ + L +K + + Q
Sbjct: 248 REKILEYKRQVQNLVNKSKKIVQ 270
Score = 32.8 bits (74), Expect = 1.6
Identities = 27/251 (10%), Positives = 78/251 (31%), Gaps = 14/251 (5%)
Query: 1173 ATVQEKIDKYDKIIADIQEYEAILATASDKGDQLSSDGTISDR-NEITEQLQSRKQQLHN 1231
A+V++ I+ + I I +Y L + S+ + + + + R L
Sbjct: 35 ASVEQHINSHRGIHNSIGDYRWQLDKIKADLREKSAIYQLEEEYENLLKASFERMDHLRQ 94
Query: 1232 LRKTVEKLRQQ----NEKRAAESEKLGAELEEIIEALHARETAVPSSSRLHNLRKTVEKL 1287
L+ ++ ++ N+ E ++ I + S+L K + KL
Sbjct: 95 LQNIIQATSREIMWINDCEEEELLYDWSDKNTNIAQKQEAFSIR--MSQLEVKEKELNKL 152
Query: 1288 RQQNEKRAAESEKLGAELEEIIEALHARETAVKTLPVLLLEVTSVDVELDKQRLELATKE 1347
+Q++++ ++E ++ L + + + + + + +
Sbjct: 153 KQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQI--TKCIDVHLKENAAYFQFFEEAQS 210
Query: 1348 VQPYVQRYETLKKNIAEAIDKFETQA-----NEHEAYKQAYNEAYDWLRKAKLGAQANAD 1402
+ Y++ + + Q E E ++ E ++ ++
Sbjct: 211 TEAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQ 270
Query: 1403 CHGEQQTTKDK 1413
+
Sbjct: 271 LKPRNPDYRSN 281
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of
spectrin, alpha-helical linker region, 3-helix coiled
coil, structural protein; 2.00A {Gallus gallus} SCOP:
a.7.1.1 a.7.1.1
Length = 216
Score = 46.1 bits (109), Expect = 4e-05
Identities = 40/206 (19%), Positives = 70/206 (33%), Gaps = 9/206 (4%)
Query: 244 YEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKI 303
+ + WL E L + L L+ ++ + D ++H+ L L +
Sbjct: 8 FNTGIKDFDFWLSEVEALL-ASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQA 66
Query: 304 ESL----HQPSEQSKQQLATITTRHGNVLKRAQKFTEAYEGIVSIHQAYTKAVLDTQEWI 359
+SL + Q K + TI R + A +HQ + + + D + WI
Sbjct: 67 DSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQ-FFRDMDDEESWI 125
Query: 360 DATYNAVNMWGDLTLERVSLHSNLERLKNLEKELGRIGHKTVALKN--NVLESTGPIGKE 417
V D + + + ++ K LE EL + + L IGKE
Sbjct: 126 KEKKLLV-SSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKE 184
Query: 418 NINQEINQITLDWTNLQNTLQVIDKH 443
I Q + Q W L+ +
Sbjct: 185 EIQQRLAQFVDHWKELKQLAAARGQR 210
Score = 43.8 bits (103), Expect = 2e-04
Identities = 37/195 (18%), Positives = 79/195 (40%), Gaps = 13/195 (6%)
Query: 701 QQYVNDELEWENHSQNTLQWLDNIRS--DMKTLLERSKHIVDDIEKKKDDLKPIQKEAQQ 758
+ D W + + L D + + LL++ + + DI +D LK + +A
Sbjct: 9 NTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADS 68
Query: 759 LSEWD----SSIVPKVSDLETRWAAVKSAWDAKHSDLSSEIAQYSSYQNAVQDAEKWLLQ 814
L S + K + R+ +KS A+ + L+ + +++ D E W+ +
Sbjct: 69 LMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDM-DDEESWIKE 127
Query: 815 ISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDYSSYQNAVQDAEKWLLQISFQLMAHNSL 874
+L+ + Y + + H++L + ++++ A+Q +L +L N++
Sbjct: 128 K--KLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQG----VLDTGKKLSDDNTI 181
Query: 875 YINNRQQTLEQIQHH 889
QQ L Q H
Sbjct: 182 GKEEIQQRLAQFVDH 196
Score = 41.4 bits (97), Expect = 0.001
Identities = 17/160 (10%), Positives = 66/160 (41%), Gaps = 3/160 (1%)
Query: 949 KEFEVDVENVEAKLKELEVAVEGDVKTNNVLMLQELLNKYAQLNEEAGELNMMISNVSIA 1008
+ F +++ + L E+E + + ++ + LL K+ L + + +++
Sbjct: 6 QNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQ 65
Query: 1009 TEHMNLNDA-DRLTVNDSVSSMQKRYAQLSRTIEDRISTVNNKLQSVKRLQHKVEEAKAL 1067
+ + + A D V D ++ R+ ++ R + +N + + + +++ ++
Sbjct: 66 ADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHR-LHQFFRDMDDEESW 124
Query: 1068 LQKAESQLA-RPVSTQAEDISEALTVYQKLLDEINSWKNS 1106
+++ + ++ + +++L E+ + + +
Sbjct: 125 IKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPA 164
Score = 39.5 bits (92), Expect = 0.005
Identities = 25/172 (14%), Positives = 55/172 (31%), Gaps = 6/172 (3%)
Query: 1748 YEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKI 1807
+ + WL E L + L L+ ++ + D ++H+ L L +
Sbjct: 8 FNTGIKDFDFWLSEVEALL-ASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQA 66
Query: 1808 ESL----HQPSEQSKQQLATITTRHGNVLKRAQKKIEA-EKDIGDCTNLDDLEKYKALLQ 1862
+SL + Q K + TI R + A + + D++ ++ ++
Sbjct: 67 DSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIK 126
Query: 1863 EVISHNSDMETLNDKCEALMELAAHSPIREETLRLQALYAALVTSVQGLVSQ 1914
E S + D H + E + ++ + + L
Sbjct: 127 EKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDD 178
Score = 34.1 bits (78), Expect = 0.29
Identities = 29/209 (13%), Positives = 79/209 (37%), Gaps = 14/209 (6%)
Query: 797 QYSSYQNAVQDAEKWLLQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDYSSYQNAVQD 856
+ ++ ++D + WL ++ L + + Y + ++ H+ L D S++++ ++
Sbjct: 4 KQQNFNTGIKDFDFWLSEVEALLASED--YGKDLASVNNLLKKHQLLEADISAHEDRLK- 60
Query: 857 AEKWLLQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDVILSPDNKLAPCFSAEEG-SP 915
L + LM ++ + + E I + ++ + + KL +
Sbjct: 61 ---DLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRD 117
Query: 916 IKDKIDRL-EKETKAQSDRIQDALKTLNQLIGHRKEFEVDVENVEAKLKELEVAVEGDVK 974
+ D+ + EK+ S+ L + L K E ++ E ++ + +
Sbjct: 118 MDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSD 177
Query: 975 TNNV------LMLQELLNKYAQLNEEAGE 997
N + L + ++ + +L + A
Sbjct: 178 DNTIGKEEIQQRLAQFVDHWKELKQLAAA 206
Score = 33.7 bits (77), Expect = 0.41
Identities = 33/206 (16%), Positives = 73/206 (35%), Gaps = 19/206 (9%)
Query: 1055 KRLQHKVEEAKALLQKAESQLA-RPVSTQAEDISEALTVYQKLLDEINSWKNS--QSDED 1111
+ +++ L + E+ LA ++ L +Q L +I++ ++ +
Sbjct: 6 QNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQ 65
Query: 1112 LVHLADSIKPL-DEVVERIE--NHAVPKLKSLLLLREQFTTLIMQIVGFI---------- 1158
L S +V ++ E N ++KS+ R ++ F
Sbjct: 66 ADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWI 125
Query: 1159 --TETTARVGEVDGNSATVQEKIDKYDKIIADIQEYEAILATASDKGDQLSSDGTISDRN 1216
+ + + VQ K+ ++ A++ +E + D G +LS D T +
Sbjct: 126 KEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNT-IGKE 184
Query: 1217 EITEQLQSRKQQLHNLRKTVEKLRQQ 1242
EI ++L L++ Q+
Sbjct: 185 EIQQRLAQFVDHWKELKQLAAARGQR 210
Score = 33.4 bits (76), Expect = 0.62
Identities = 28/223 (12%), Positives = 73/223 (32%), Gaps = 8/223 (3%)
Query: 1373 ANEHEAYKQAYNEAYDWLRKAKLGAQANADCHGEQQTTKDKADKIKQITKSLPEGQKLID 1432
AN+ + + + WL + + + D + + + K + + + + +
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLA-SEDYGKDLASVNNLLKKHQLLEADISAHEDRLK 60
Query: 1433 KTVALKNNVLESTGPIGKENINQEINQITLDWTNLQNTLQDIDKHHAKCLSLWNDFLSSK 1492
+ ++++ S + + I + +++ + L F
Sbjct: 61 DLNSQADSLMTS-SAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQ-FFRDM 118
Query: 1493 NTLEKWIEGFQKKIESEKDIGDCTNLDDLEKYKALLQEGLHKEADNKKVLIDSFNKGIIG 1552
+ E WI+ + + SE D T + +L K + L E + I
Sbjct: 119 DDEESWIKEKKLLVSSEDYGRDLTGVQNLRKK----HKRLEAELAAHEPAIQGVLDTGKK 174
Query: 1553 MTELESEEVKDLIQVGVHGLQVELNALLQNIEAEINKVANAAQ 1595
+++ + K+ IQ + L Q A ++ + +
Sbjct: 175 LSDDNTIG-KEEIQQRLAQFVDHWKELKQLAAARGQRLEESLE 216
Score = 32.2 bits (73), Expect = 1.3
Identities = 28/179 (15%), Positives = 64/179 (35%), Gaps = 15/179 (8%)
Query: 141 KTTLQEVLSHKRIIESLLDKSKSLPQINKDQA--LEKAIVSVNKRYEDLVDGILKTISQL 198
+ ++ +H+ ++ L ++ SL + ++ ++N R++ + ++L
Sbjct: 46 QLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKL 105
Query: 199 EESLDIFQQFQQLQKAYQEDQKQLWDKLSSLTERELKGKLSSWCGYEESVATLLDWLKVT 258
ES + Q F+ + S + E++L + V L K
Sbjct: 106 NESHRLHQFFRDMDDE-----------ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRL 154
Query: 259 EKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESLHQPSEQSKQQL 317
E +L + + +L TI ++ + Q D + L Q + Q+L
Sbjct: 155 EAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLA--QFVDHWKELKQLAAARGQRL 211
Score = 30.3 bits (68), Expect = 5.9
Identities = 25/207 (12%), Positives = 63/207 (30%), Gaps = 19/207 (9%)
Query: 1861 LQEVISHNSDMETLNDKCEALMELAAHSPIREETLRLQALYAALVTSVQGLVSQVEKNLS 1920
Q + D + + EAL+ + L + L + +++ S
Sbjct: 5 QQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNS 64
Query: 1921 DQTEFLAKKEEVEAWLHKAHATVQEC-DELEAGIKEEQKNIETQYLQWNSFRETLAQMTA 1979
+ + + T+ +++ + + + FR+ + +
Sbjct: 65 QADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRD-MDDEES 123
Query: 1980 WLDSVEKNIKQEIATPWTTTQELRSKLLKLKEILKKCEKGVGDHEAFVDKYEECSQKLAQ 2039
W+ + + +++ L ++ + KK H+ + +
Sbjct: 124 WIKEKKLLVS---------SEDYGRDLTGVQNLRKK-------HKRLEAELAAHEPAIQG 167
Query: 2040 VEAKYAKLIEPET-SYEELQKRQGQLT 2065
V KL + T EE+Q+R Q
Sbjct: 168 VLDTGKKLSDDNTIGKEEIQQRLAQFV 194
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 46.6 bits (111), Expect = 1e-04
Identities = 31/245 (12%), Positives = 79/245 (32%), Gaps = 12/245 (4%)
Query: 828 NNRQQTLEQIQHHEKLLQDYSSYQNAVQDAEKWLLQISFQLMAHNSLYINNRQQTLEQIQ 887
+ +Q + + YQ +++ + ++Q + Y + +
Sbjct: 836 QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQC 895
Query: 888 HHEKLLQDVILSPDNKLAPCFSAEEGSPIKDKIDRLEKETKAQSDRIQDALKTLNQLIGH 947
+ +++ L KL A K LE + +I + K L+
Sbjct: 896 CYRRMMAKREL---KKLK--IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEK 950
Query: 948 RKEFEVDVENVEAKLKELEVAVEGDVKTNNVLMLQELLNKYAQLNEEAGELNMMISNVSI 1007
E+ KL+ + + + N+ L EE +L +
Sbjct: 951 MNNLEITYSTETEKLRSDVERLRMSEEEA-----KNATNRVLSLQEEIAKLRKELHQTQT 1005
Query: 1008 ATEHM-NLNDADRLTVNDSVSSMQKRYAQLSRTIEDRISTVNNKLQSV-KRLQHKVEEAK 1065
+ + D + VS ++++ L E+ ++++ + + + ++ K+ E
Sbjct: 1006 EKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEET 1065
Query: 1066 ALLQK 1070
L+
Sbjct: 1066 KQLEL 1070
Score = 44.3 bits (105), Expect = 6e-04
Identities = 30/237 (12%), Positives = 83/237 (35%), Gaps = 25/237 (10%)
Query: 1138 KSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKIIADIQEYEAILA 1197
K +R+ L + G++ ++ + S +Q+ + + + + +AI+
Sbjct: 833 KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY 892
Query: 1198 TASDKGDQL-------------SSDGTISDRNEITEQLQSRKQQLHNLRKTVEKLRQQNE 1244
+ S + + ++ ++++ K + L ++
Sbjct: 893 LQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMN 952
Query: 1245 KRAAESEKLGAELEEIIEALHARETAVPSS--------SRLHNLRKTVEKLRQQNEKRAA 1296
+L +E L E ++ + LRK + + + + +
Sbjct: 953 NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEE 1012
Query: 1297 ESEKLGAELEEIIEALHARETAVKT----LPVLLLEVTSVDVELDKQRLELATKEVQ 1349
++K E E+++ L + T +KT L + + E +++L TK+++
Sbjct: 1013 WADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLE 1069
Score = 36.2 bits (84), Expect = 0.13
Identities = 38/267 (14%), Positives = 96/267 (35%), Gaps = 28/267 (10%)
Query: 1855 EKYKALLQEVISHNSDMETLNDKCEALMELAAHSPIREE----TLRLQALYAALVTSVQG 1910
++Y+ + I+ + + + + M L H I + + Y + ++
Sbjct: 833 KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY 892
Query: 1911 LVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQECDELEAGIKEEQKNIETQYLQWNSF 1970
L + ++ + K E +K + LE I + Q+ I+ Q ++ S
Sbjct: 893 LQCCYRRMMAKRELKKLKIEARSVERYK-----KLHIGLENKIMQLQRKIDEQNKEYKSL 947
Query: 1971 RETLAQMTAWLDSVEKNIKQEIATPWTTTQELRSKLLKLKEILKKCEKGVGDHEAFVDKY 2030
E + + E E ++LRS + +L+ ++ + + ++
Sbjct: 948 LEKMNNL-------EITYSTET-------EKLRSDVERLRMSEEEAKNATNRVLSLQEEI 993
Query: 2031 EECSQKLAQVEAKYAKLIEPETSY-EELQKRQGQL----TALLTEKVDMDVLLNACVDLC 2085
+ ++L Q + + + E Y E ++ +L T L TEK +++ ++
Sbjct: 994 AKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEI 1053
Query: 2086 DKVYESTSEPGHEPLRVQMEKLQQAVE 2112
+ E + L + + + +
Sbjct: 1054 TETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 36.2 bits (84), Expect = 0.17
Identities = 27/190 (14%), Positives = 62/190 (32%), Gaps = 32/190 (16%)
Query: 1491 SKNTLEKWIEGFQKKIESEKDIGDCTNLDDLEKYKALLQEGLHKEADNKKVLIDSFNKGI 1550
LE I Q+KI+ + L + L+ E + + ++
Sbjct: 922 LHIGLENKIMQLQRKIDEQNKE-----YKSLLEKMNNLEITYSTETEKLRSDVE------ 970
Query: 1551 IGMTELESEEVKDLIQVGVHGLQVELNALLQNIEAEINKVANAAQERKAMQDKISKLQSW 1610
L E + + +L + I ++ E+K +++ K +
Sbjct: 971 ----RLRMSEEE------AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020
Query: 1611 LKQYIDYSGNKQALQSRLDKVN-EIQESFPEISTKLQTLSDHIENSSRKLPSRTNEAMYR 1669
+Q L S L + N ++ E++ ++ + I + K + +
Sbjct: 1021 TEQ----------LVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLEL 1070
Query: 1670 DLANLRYDFE 1679
DL + R ++
Sbjct: 1071 DLNDERLRYQ 1080
Score = 33.2 bits (76), Expect = 1.2
Identities = 30/218 (13%), Positives = 73/218 (33%), Gaps = 37/218 (16%)
Query: 1729 LNEKKQQRELKGKLSSWCGYEESVATL-LDWLKVTEKKLGDE-----------MELKTTL 1776
L R LK + C Y +A L LK+ + + M+L+ +
Sbjct: 878 LARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKI 937
Query: 1777 DEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESLHQPSEQSKQQLATITTRHGNVLKRAQ 1836
DE+ + + + + + +K+ S + S+++ T R + Q
Sbjct: 938 DEQNKEYKSLL---EKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNR----VLSLQ 990
Query: 1837 KKIEAEKDIGDCTNLDDLEK-YKALLQEVISHNSDMETLNDKCEALMELAAHSPIREETL 1895
++I + L + K + + + + E L + ++E+
Sbjct: 991 EEIAKLRK-----ELHQTQTEKKTIEEWADKYKHETEQLVSE------------LKEQNT 1033
Query: 1896 RLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVE 1933
L+ L + ++ + + + K+ E++
Sbjct: 1034 LLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELD 1071
Score = 33.2 bits (76), Expect = 1.2
Identities = 26/200 (13%), Positives = 60/200 (30%), Gaps = 13/200 (6%)
Query: 1976 QMTAWLDSVEKNIKQEIATPWTTTQELRSKLLKLKEILKKCEKGVGDHEAFVDKYEECSQ 2035
+ T ++K + + Q +R + L+ +L+ + Q
Sbjct: 814 RRTRAAIIIQKFQRMYVVR--KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQ 871
Query: 2036 KLAQVEAKYAKLIEPETSYEELQKR------QGQLTALLTEKVDMDVLLNACVDLCDKVY 2089
K + + LQ + +L L E ++ + L +K+
Sbjct: 872 KHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIM 931
Query: 2090 ESTS-----EPGHEPLRVQMEKLQQAVEALYDKITVTESLILSQVEAKYAKLIEPETSYE 2144
+ ++ L +M L+ +K+ + E + E
Sbjct: 932 QLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE 991
Query: 2145 ELQKRQGQLTALLAEKVDMD 2164
E+ K + +L EK ++
Sbjct: 992 EIAKLRKELHQTQTEKKTIE 1011
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer,
complex, three-helix bundle, alpha helix repeat, helical
linker, actin capping; 2.80A {Homo sapiens}
Length = 185
Score = 43.7 bits (103), Expect = 2e-04
Identities = 25/161 (15%), Positives = 57/161 (35%), Gaps = 9/161 (5%)
Query: 701 QQYVNDELEWENHSQNTLQWLDNIR--SDMKTLLERSKHIVDDIEKKKDDLKPIQKEAQQ 758
D L W ++ + R S ++ L++ + I +IE + + + +
Sbjct: 10 FSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELGES 69
Query: 759 LSEWD----SSIVPKVSDLETRWAAVKSAWDAKHSDLSSEIAQYSSYQNAVQDAEKWLLQ 814
L + I K+ + +R + W+A+ L + + + AE WL+
Sbjct: 70 LLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERL-RMLLEVCQFSRDASVAEAWLIA 128
Query: 815 ISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDYSSYQNAVQ 855
L + + + + I+ HE + +S+
Sbjct: 129 QEPYLA--SGDFGHTVDSVEKLIKRHEAFEKSTASWAERFA 167
Score = 36.0 bits (83), Expect = 0.063
Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 4/128 (3%)
Query: 454 FLSSKNTLEKWIEGFQKKIEAEKDIGDCTNLDDL-EKYKALLQEVISHNSDMETLNDKCE 512
F S L W+E ++IE ++ D ++++ L + ++ + E+ + + + + E
Sbjct: 9 FFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELGE 68
Query: 513 ALMELA--AHSPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWLH 570
+L++ A IRE+ ++ + + + ++ L +F EAWL
Sbjct: 69 SLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVC-QFSRDASVAEAWLI 127
Query: 571 KAHATVQE 578
+
Sbjct: 128 AQEPYLAS 135
Score = 33.3 bits (76), Expect = 0.52
Identities = 21/175 (12%), Positives = 55/175 (31%), Gaps = 8/175 (4%)
Query: 794 EIAQYSSYQNAVQDAEKWLLQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDYSSYQNA 853
A + + +D W+ I Q+ + +++H+ + + +
Sbjct: 2 STADKFRFFSMARDLLSWMESIIRQIETQE--RPRDVSSVELLMKYHQGINAEIETRSKN 59
Query: 854 VQDAEKWLLQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDVILSPDNKLAPCFSAEEG 913
L++ L+ ++ L+Q+ K + + + +L +
Sbjct: 60 FSA----CLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQF 115
Query: 914 SPIKDKIDRL--EKETKAQSDRIQDALKTLNQLIGHRKEFEVDVENVEAKLKELE 966
S + +E S + ++ +LI + FE + + LE
Sbjct: 116 SRDASVAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALE 170
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of
spectrin, alpha helical linker region, 3- helix
coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP:
a.7.1.1 a.7.1.1
Length = 214
Score = 42.9 bits (101), Expect = 5e-04
Identities = 32/196 (16%), Positives = 85/196 (43%), Gaps = 14/196 (7%)
Query: 701 QQYVNDELEWENHSQNTLQWLDNIRS--DMKTLLERSKHIVDDIEKKKDDLKPIQKEAQQ 758
Q ++D W + +Q + D S + + LL++ I D+I+ +D + +++ ++
Sbjct: 6 LQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEK 65
Query: 759 LSEWDS-----SIVPKVSDLETRWAAVKSAWDAKHSDLSSEIAQYSSYQNAVQDAEKWLL 813
+ + + + ++ L+T W A+ W+++ L ++ + +Q + AE L
Sbjct: 66 VIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTL-AQCLGFQEFQKDAKQAEAILS 124
Query: 814 QISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDYSSYQNAVQDAEKWLLQISFQLMAHNS 873
+ L + ++ + I+ E L + ++ V + +L+A +
Sbjct: 125 NQEYTL--AHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLS----PVDSGNKLVAEGN 178
Query: 874 LYINNRQQTLEQIQHH 889
LY + ++ ++ I+
Sbjct: 179 LYSDKIKEKVQLIEDR 194
Score = 42.6 bits (100), Expect = 5e-04
Identities = 32/208 (15%), Positives = 72/208 (34%), Gaps = 6/208 (2%)
Query: 454 FLSSKNTLEKWIEGFQKKIEAEKDIGDCTNLDD-LEKYKALLQEVISHNSDMETLNDKCE 512
FL + + W+ QK + +E + L+++ + E+ H + + + E
Sbjct: 5 FLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGE 64
Query: 513 ALMELAAHSPIREETLRLQAL---YAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWL 569
+++ RL+ L + AL + + + L Q EF ++ EA L
Sbjct: 65 KVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQ-EFQKDAKQAEAIL 123
Query: 570 HKAHATVQECAGNGSKNVLKERLDTVNMVAERIPEGQHLMSVLQDTFTKALDTTPSDQQD 629
T+ S + + + + + D+ K + D
Sbjct: 124 SNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLY-SD 182
Query: 630 SLREAMTVLRDSWDRLNRDLKSTSTQLK 657
++E + ++ D + N + S L+
Sbjct: 183 KIKEKVQLIEDRHRKNNEKAQEASVLLR 210
Score = 40.3 bits (94), Expect = 0.004
Identities = 25/202 (12%), Positives = 70/202 (34%), Gaps = 10/202 (4%)
Query: 244 YEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKI 303
+ + + WL +T+K + E ++ +L E + LQ + I + HQ ++K+
Sbjct: 5 FLQDLDDFQAWLSITQKAVASE-DMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESG 63
Query: 304 ESL-----HQPSEQSKQQLATITTRHGNVLKRAQKFTEAYEGIVSIHQAYTKAVLDTQEW 358
E + Q+L + T + + + + + + + K +
Sbjct: 64 EKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQE-FQKDAKQAEAI 122
Query: 359 IDATYNAVNMWGDLTLERVSLHSNLERLKNLEKELGRIGHKTVALKN--NVLESTGPIGK 416
+ + + + + + + ++ + K ++ + N L + G +
Sbjct: 123 LSNQEYTLAHL-EPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYS 181
Query: 417 ENINQEINQITLDWTNLQNTLQ 438
+ I +++ I Q
Sbjct: 182 DKIKEKVQLIEDRHRKNNEKAQ 203
Score = 35.6 bits (82), Expect = 0.097
Identities = 23/214 (10%), Positives = 75/214 (35%), Gaps = 13/214 (6%)
Query: 849 SYQNAVQDAEKWLLQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDV---------ILS 899
++ + D + WL + + + + + + +Q H + ++ +
Sbjct: 4 AFLQDLDDFQAWLSITQKAVASED--MPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKE 61
Query: 900 PDNKLAPCFSAEEGSPIKDKIDRLEKETKAQSDRIQDALKTLNQLIGHRKEFEVDVENVE 959
K+ + E + +++ L+ A + TL Q +G ++ F+ D + E
Sbjct: 62 SGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQE-FQKDAKQAE 120
Query: 960 AKLKELEVAVEGDVKTNNVLMLQELLNKYAQLNEEAGELNMMISNV-SIATEHMNLNDAD 1018
A L E + +++ + + K+ + + + + +
Sbjct: 121 AILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLY 180
Query: 1019 RLTVNDSVSSMQKRYAQLSRTIEDRISTVNNKLQ 1052
+ + V ++ R+ + + ++ + + L+
Sbjct: 181 SDKIKEKVQLIEDRHRKNNEKAQEASVLLRDNLE 214
Score = 33.7 bits (77), Expect = 0.49
Identities = 36/221 (16%), Positives = 73/221 (33%), Gaps = 21/221 (9%)
Query: 1851 LDDLEKYKALLQEVISHNSDMETLNDKCEALMELAAHSPIREETLRLQALYAALVTSVQG 1910
L DL+ ++A L + + EA L H+ I++E Q Y + S +
Sbjct: 6 LQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEK 65
Query: 1911 LVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQECDELEAGIKEEQKNIETQYLQWNSF 1970
++ Q + + + L D L + + Q L + F
Sbjct: 66 VI---------QGQTDPEYLLLGQRLEGLD---TGWDALGRMWESRSHTLA-QCLGFQEF 112
Query: 1971 RETLAQMTAWLDSVEKNIKQEIATPWTTTQELRSKLLKLKEILKKCEKGVGDHEAFVDKY 2030
++ Q A L + E + P + + + + K ++ L E + V
Sbjct: 113 QKDAKQAEAILSNQEYTLAHLE--PPDSLEAAEAGIRKFEDFLGSMEN----NRDKVLSP 166
Query: 2031 EECSQKLAQVEAKYAKLIEPETSYEELQKRQGQLTALLTEK 2071
+ KL Y+ I+ + + ++ R + E
Sbjct: 167 VDSGNKLVAEGNLYSDKIKEKV--QLIEDRHRKNNEKAQEA 205
Score = 32.2 bits (73), Expect = 1.2
Identities = 16/159 (10%), Positives = 54/159 (33%), Gaps = 14/159 (8%)
Query: 1159 TETTARVGEVDGNSATVQEKIDKYDKIIADIQEYEAILATASDKGDQLSSDGTISDRNEI 1218
T+ ++ + ++ + ++ I +I ++ + G+++ T + +
Sbjct: 19 TQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLL 78
Query: 1219 TEQLQSRKQQLHNLRKTVEKLRQQNEKR------AAESEKLGAELEEIIEALHARETAVP 1272
Q+L L + L + E R ++ + ++ L +E +
Sbjct: 79 -------GQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAILSNQEYTL- 130
Query: 1273 SSSRLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEA 1311
+ + + E ++ E E ++ +++
Sbjct: 131 AHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDS 169
Score = 31.4 bits (71), Expect = 2.4
Identities = 29/171 (16%), Positives = 56/171 (32%), Gaps = 10/171 (5%)
Query: 66 DWLTGLEKDLDTLKNTTDVEAKNSLLQK---LLTEKDQAGHKLTYLTSSGEKLYLDTAAK 122
WL+ +K + + + LLQ+ + E D + SGEK+
Sbjct: 14 AWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDP 73
Query: 123 GREVVRQQLRALRDSKCSKTTLQEVLSHKRIIESLLDKSKSLPQINKDQALEKAIVSVNK 182
++ Q+L L L + + L + + KD +AI+S N+
Sbjct: 74 EYLLLGQRLEGLDT---GWDALGRMWESRS---HTLAQCLGFQEFQKDAKQAEAILS-NQ 126
Query: 183 RYEDLVDGILKTISQLEESLDIFQQFQQLQKAYQEDQKQLWDKLSSLTERE 233
Y ++ E + F+ F + ++ D + L
Sbjct: 127 EYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEG 177
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 42.2 bits (99), Expect = 8e-04
Identities = 28/197 (14%), Positives = 68/197 (34%), Gaps = 13/197 (6%)
Query: 699 KWQQYVNDELEWENHSQNTLQWLDNIR--SDMKTLLERSKHIVDDIEKKKDDLKPIQKEA 756
++ D + W N + + + + + + LLER + +I+ + + ++
Sbjct: 17 RFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFG 76
Query: 757 QQLSE----WDSSIVPKVSDLETRWAAVKSAWDAKHSDLSSEIAQYSSYQNAVQDAEKWL 812
QQL I K+ L+ A ++ AW + L + + + + AE W+
Sbjct: 77 QQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMML-DQCLELQLFHRDCEQAENWM 135
Query: 813 LQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDYSSYQNAVQDAEKWLLQISFQLMAHN 872
+ + ++ I+ HE + + + + L + QL+A
Sbjct: 136 AAR--EAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAA----LQAFADQLIAAG 189
Query: 873 SLYINNRQQTLEQIQHH 889
+ ++
Sbjct: 190 HYAKGDISSRRNEVLDR 206
Score = 40.3 bits (94), Expect = 0.004
Identities = 29/201 (14%), Positives = 74/201 (36%), Gaps = 9/201 (4%)
Query: 244 YEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKI 303
+ L+ W+ + EL + +A L+ ++ + + +
Sbjct: 18 FLSDFRDLMSWINGIRGLV-SSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFG 76
Query: 304 ESL----HQPSEQSKQQLATITTRHGNVLKRAQKFTEAYEGIVSIHQAYTKAVLDTQEWI 359
+ L H S + KQ+L + ++ K + + + + + + + W+
Sbjct: 77 QQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLELQL-FHRDCEQAENWM 135
Query: 360 DATYNAVNMWGDLTLERVSLHSNLERLKNLEKELGRIGHKTVALKN--NVLESTGPIGKE 417
A +N D S+ + +++ ++ +K + K AL+ + L + G K
Sbjct: 136 AAREAFLNT-EDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKG 194
Query: 418 NINQEINQITLDWTNLQNTLQ 438
+I+ N++ W L+ +
Sbjct: 195 DISSRRNEVLDRWRRLKAQMI 215
Score = 37.2 bits (86), Expect = 0.029
Identities = 33/201 (16%), Positives = 71/201 (35%), Gaps = 5/201 (2%)
Query: 453 DFLSSKNTLEKWIEGFQKKIEAEKDIGDCTNLDD-LEKYKALLQEVISHNSDMETLNDKC 511
FLS L WI G + + +++ D T + LE+++ E+ + +
Sbjct: 17 RFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFG 76
Query: 512 EALMELAAHSP--IREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWL 569
+ L+ ++ I+++ L A L + +++ L Q F E+ E W+
Sbjct: 77 QQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLELQ-LFHRDCEQAENWM 135
Query: 570 HKAHATVQECAGNGSKNVLKERLDTVNMVAERIPEGQHLMSVLQDTFTKALDTTPSDQQD 629
A + S + ++ + + I + ++ LQ L +
Sbjct: 136 AAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAF-ADQLIAAGHYAKG 194
Query: 630 SLREAMTVLRDSWDRLNRDLK 650
+ + D W RL +
Sbjct: 195 DISSRRNEVLDRWRRLKAQMI 215
Score = 30.7 bits (69), Expect = 4.1
Identities = 22/175 (12%), Positives = 52/175 (29%), Gaps = 34/175 (19%)
Query: 647 RDLKSTSTQLKSYIARWNELDDLYNRFNMWLSGVENKLNEPSPVFTEI-----DLNTKWQ 701
+D+ L+ + E+D F + + L EI L+ +
Sbjct: 43 KDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERA 102
Query: 702 QYVNDELEWENHSQNTLQ-------------WLDNIR------------SDMKTLLERSK 736
++ L+ W+ ++ L+++ +
Sbjct: 103 DLEKAWVQRRMMLDQCLELQLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHE 162
Query: 737 HIVDDIEKKKDDLKPIQKEAQQLSEWD----SSIVPKVSDLETRWAAVKSAWDAK 787
I +++ + +Q A QL I + +++ RW +K+ K
Sbjct: 163 DFDKAINVQEEKIAALQAFADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQMIEK 217
Score = 30.3 bits (68), Expect = 5.0
Identities = 35/211 (16%), Positives = 64/211 (30%), Gaps = 22/211 (10%)
Query: 1861 LQEVISHNSDMETLNDKCEALMELAAHSPIREETLRLQALYAALVTSVQGLVSQVEKNLS 1920
+ + S E D A L H R E + A Q L++
Sbjct: 29 INGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLAHGH---- 84
Query: 1921 DQTEFLAKKEEVEAWLHKAHATVQECDELEAGIKEEQKNIETQYLQWNSFRETLAQMTAW 1980
E++ L QE +LE + + ++ Q L+ F Q W
Sbjct: 85 ------YASPEIKQKLDILD---QERADLEKAWVQRRMMLD-QCLELQLFHRDCEQAENW 134
Query: 1981 LDSVEKNIKQEIATPWTTTQELRSKLLKLKEILKKCEKGVGDHEAFVDKYEECSQKLAQV 2040
+ + E + E + + + + K ++ K E + + + +L
Sbjct: 135 MAAREAFLNTED--KGDSLDSVEALIKKHEDFDKAINV----QEEKIAALQAFADQLIAA 188
Query: 2041 EAKYAKLIEPETSYEELQKRQGQLTALLTEK 2071
I E+ R +L A + EK
Sbjct: 189 GHYAKGDISSRR--NEVLDRWRRLKAQMIEK 217
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 41.7 bits (97), Expect = 8e-04
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 1228 QLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVPSSSRLHNLR-KTVEK 1286
Q L + E +R+ E++ ++L A + + + RE A + + + VEK
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEW--REKAKKDLEEWNQRQSEQVEK 133
Query: 1287 LRQQNEKRAAESEKLGAELEE 1307
+ N R A+ + + +
Sbjct: 134 NKINN--RIAD-KAFYQQPDA 151
Score = 39.4 bits (91), Expect = 0.005
Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 33/107 (30%)
Query: 1275 SRLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVKTLPVLLLEVTSVDV 1334
++ L + E +R+ E++ ++L A + + + RE A K
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEW--REKAKK-------------- 118
Query: 1335 ELDKQRLELATKEVQPYVQRYETLKKNIAEAIDKFETQANEHEAYKQ 1381
+L++ ++ E ++KN + + Y+Q
Sbjct: 119 DLEEW-----------NQRQSEQVEKNKI------NNRIADKAFYQQ 148
Score = 29.7 bits (66), Expect = 8.0
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 10/62 (16%)
Query: 1930 EEVEAWLHKAHATVQECDELEAGIKEEQKNIETQYL-QWNSFRETLAQMTAWLDSVEKNI 1988
E + W + +QE D +++E + + L +WN + + VEKN
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS---------EQVEKNK 135
Query: 1989 KQ 1990
Sbjct: 136 IN 137
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin
repeat structural protein, crosslinking; 2.22A {Homo
sapiens}
Length = 210
Score = 40.3 bits (94), Expect = 0.003
Identities = 29/203 (14%), Positives = 71/203 (34%), Gaps = 9/203 (4%)
Query: 244 YEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKI 303
+ LL W++ + ++ D E L +AQL +R ++Q + + + +
Sbjct: 10 TLRYLQDLLAWVEENQHRV-DGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSDE 68
Query: 304 ESLHQPSEQS-KQQLATITTRHGNVLKRAQKFTEAYEGIVSIHQAYTKAVLDTQEWIDAT 362
L + + + L + ++ +L ++ + E + ++ A W++
Sbjct: 69 GQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESL----HSFVAAATKELMWLNEK 124
Query: 363 YNAVNMWGDLTLERVSLHSNLERLKNLEKELGRIGHKTVALKN--NVLESTGPIGKENIN 420
D + ++ + E L +EL K L+N + L + +
Sbjct: 125 EEEEVG-FDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTVE 183
Query: 421 QEINQITLDWTNLQNTLQVIDKH 443
+ W+ + I+ H
Sbjct: 184 SFQAALQTQWSWMLQLCCCIEAH 206
Score = 38.8 bits (90), Expect = 0.010
Identities = 31/216 (14%), Positives = 71/216 (32%), Gaps = 11/216 (5%)
Query: 445 AKCLSIWNDFLSSKNTLEKWIEGFQKKIEAE---KDIGDCTNLDDLEKYKALLQEVISHN 501
+ + + L L W+E Q +++ D+ L ++ L Q +
Sbjct: 1 GSHMELEDSTLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQ--LGSHRGLHQSIEEFR 58
Query: 502 SDMETLNDKCEALMELAAHSPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAK 561
+ +E L A R+ RL YA L+ S + ++L F+A
Sbjct: 59 AKIERARSDEGQLSP-ATRGAYRDCLGRLDLQYAKLLNSSK----ARLRSLESLHSFVAA 113
Query: 562 KEEVEAWLHKAHATVQECAGNGSKNVLKERLDTVNMVAERIPEGQHLMSVLQDTFTKALD 621
+ WL++ + + + ++ + + + + + LQ+ + L
Sbjct: 114 ATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLR 173
Query: 622 TTPSDQQDSLREAMTVLRDSWDRLNRDLKSTSTQLK 657
+ ++ L+ W + + LK
Sbjct: 174 EDHPAR-PTVESFQAALQTQWSWMLQLCCCIEAHLK 208
Score = 35.7 bits (82), Expect = 0.11
Identities = 23/191 (12%), Positives = 70/191 (36%), Gaps = 13/191 (6%)
Query: 702 QYVNDELEWENHSQNTLQWLDNIRS--DMKTLLERSKHIVDDIEKKKDDLKPIQKEAQQL 759
+Y+ D L W +Q+ + + ++ L + + IE+ + ++ + + QL
Sbjct: 12 RYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSDEGQL 71
Query: 760 SEWD-SSIVPKVSDLETRWAAVKSAWDAKHSDLSSEIAQYSSYQNAVQDAEKWLLQISFQ 818
S + + L+ ++A + ++ A+ L S+ A WL + +
Sbjct: 72 SPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLE----SLHSFVAAATKELMWLNEKEEE 127
Query: 819 LMAHNSLYINNRQQTLEQIQHHEKLLQDYSSYQNAVQDAEKWLLQISFQLMAHNSLYINN 878
+ + + + + + + L+++ + +++ L +L+ +
Sbjct: 128 EVGFD--WSDRNTNMTAKKESYSALMRELELKEKKIKE----LQNAGDRLLREDHPARPT 181
Query: 879 RQQTLEQIQHH 889
+ +Q
Sbjct: 182 VESFQAALQTQ 192
Score = 32.2 bits (73), Expect = 1.3
Identities = 21/168 (12%), Positives = 60/168 (35%), Gaps = 4/168 (2%)
Query: 1748 YEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKI 1807
+ LL W++ + ++ D E L +AQL +R ++Q + + + +
Sbjct: 10 TLRYLQDLLAWVEENQHRV-DGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSDE 68
Query: 1808 ESLHQPSEQS-KQQLATITTRHGNVLKRAQKKIEAEKDIGDCTNLDDLEKYKALLQEVIS 1866
L + + + L + ++ +L ++ ++ + + + + K L E
Sbjct: 69 GQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHSF--VAAATKELMWLNEKEE 126
Query: 1867 HNSDMETLNDKCEALMELAAHSPIREETLRLQALYAALVTSVQGLVSQ 1914
+ + + ++S + E + L + L+ +
Sbjct: 127 EEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLRE 174
Score = 30.7 bits (69), Expect = 3.7
Identities = 26/173 (15%), Positives = 66/173 (38%), Gaps = 4/173 (2%)
Query: 1143 LREQFTTLIMQIVGFITETTARV--GEVDGNSATVQEKIDKYDKIIADIQEYEAILATAS 1200
L + + ++ ++ E RV E + +V+ ++ + + I+E+ A + A
Sbjct: 6 LEDSTLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERAR 65
Query: 1201 DKGDQLSSDGTISDRNEITEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEI 1260
QLS + +L + +L N K + + A + K L E
Sbjct: 66 SDEGQLSPATR-GAYRDCLGRLDLQYAKLLNSSKARLRSLESLHSFVAAATKELMWLNEK 124
Query: 1261 IEALHARETAVPSSSRLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALH 1313
E + + ++ + +++ L ++ E + + ++L + ++ H
Sbjct: 125 EEEEVGFDWS-DRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDH 176
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 40.8 bits (95), Expect = 0.003
Identities = 29/191 (15%), Positives = 72/191 (37%), Gaps = 7/191 (3%)
Query: 453 DFLSSKNTLEKWIEGFQKKIEAEKDIGDCTNLDDL-EKYKALLQEVISHNSDMETLNDKC 511
F+++ W+ +++ TN+ E Y AL++E+ ++ L +
Sbjct: 12 SFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAG 71
Query: 512 EALMELA--AHSPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWL 569
+ L+ A + LQ ++ ++ + + +++N + +F + E E L
Sbjct: 72 DRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYF-QFFSDVREAEGQL 130
Query: 570 HKAHATVQE---CAGNGSKNVLKERLDTVNMVAERIPEGQHLMSVLQDTFTKALDTTPSD 626
K ++ C + + L++ L E++ E + +S L + P
Sbjct: 131 QKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAVVQLKPRH 190
Query: 627 QQDSLREAMTV 637
+R + +
Sbjct: 191 PAHPMRGRLPL 201
Score = 32.7 bits (74), Expect = 1.1
Identities = 32/201 (15%), Positives = 64/201 (31%), Gaps = 49/201 (24%)
Query: 699 KWQQYVNDELEWENHSQNTLQWLDNIRS--DMKTLLERSKHIVDDIEKKKDDLKPIQKEA 756
+ EL W N + D +M E ++ ++E K+ +K +Q
Sbjct: 12 SFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAG 71
Query: 757 QQLSEWDSSIVPKVSDLETRWAAVKSAWDAKHSDLSSEIAQYSSYQNAVQDAEKWLLQIS 816
+L D P +E+ AA+++ W W+LQ+
Sbjct: 72 DRLLREDH---PARPTVESFQAALQTQWS-------------------------WMLQLC 103
Query: 817 FQLMAHNSLYINNRQQTLEQIQHHEKLLQDYSSYQNAVQDAEKWLLQISFQLMAHNSLYI 876
+ L++ Y + + V++AE L ++ L S
Sbjct: 104 CC-----------IEAHLKEN-------AAYFQFFSDVREAEGQLQKLQEALRRKYSCDR 145
Query: 877 NNRQQTLE-QIQHHEKLLQDV 896
+ LE +Q + + +
Sbjct: 146 SATVTRLEDLLQDAQDEKEQL 166
Score = 30.4 bits (68), Expect = 5.7
Identities = 24/203 (11%), Positives = 60/203 (29%), Gaps = 18/203 (8%)
Query: 1924 EFLAKKEEVEAWLHKAHATVQECDELEAGIKEEQKNIETQYLQWNSFRETLAQMTAWLDS 1983
F+A + WL++ D + N+ + +++ L +
Sbjct: 12 SFVAAATKELMWLNEKEEEEVGFD-----WSDRNTNMTAKKESYSALMRELELKEKKIKE 66
Query: 1984 VEKNIKQ----------EIATPWTTTQELRSKLLKLKEILKKCEKGVGDHEAFVDKYEEC 2033
++ + + + Q S +L+L ++ K + F E
Sbjct: 67 LQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFSDVREA 126
Query: 2034 SQKLAQVEAKYAKLIEPETSYEELQKRQGQLTALLTEKVDMDVLLNACVDLCDKVYESTS 2093
+L +++ + + S + + + L EK ++ L +
Sbjct: 127 EGQLQKLQEALRRKYSCDRS-ATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAVVQ 185
Query: 2094 EPGHEPLRVQMEKLQQAVEALYD 2116
P +L + A+ D
Sbjct: 186 LKPRHPAHPMRGRLP--LLAVCD 206
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral
protein complex, cell cycle; 2.30A {Homo sapiens} PDB:
2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Length = 704
Score = 41.5 bits (96), Expect = 0.003
Identities = 42/446 (9%), Positives = 133/446 (29%), Gaps = 22/446 (4%)
Query: 1062 EEAKALLQKAESQLARPVSTQAEDISEALTVYQKLLDEIN-SWKNSQSDEDLVHLADSIK 1120
++ + A Q A + + + D+IN + ++ D D ++ D +
Sbjct: 272 QQYYFGEEIARLQHAAELIKTVASRYDEYVNVKDFSDKINRALAAAKKDNDFIYH-DRVP 330
Query: 1121 PLDEVVERIENHAVPKLKSLLLLREQFTTLIMQIVGFITETTARV--GEVDGNSATVQEK 1178
L ++ + V + + ++FT L ++V + + +
Sbjct: 331 DLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQ 390
Query: 1179 IDKYDKIIADIQEYEAILATASDKGDQLSSDGTISDRNEITEQ--LQSRKQQLHNLRKTV 1236
+ + + + + A D ++ + EQ +Q+ Q + L + +
Sbjct: 391 MREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELL 450
Query: 1237 EKLRQQNEKRAAESEKLGAELEEIIEALHARETAVPSSSRLHNLRKTVEKLRQQNEKRAA 1296
++ R+ ++ ++ A ++ R PS+ LR R +K
Sbjct: 451 QRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQ 510
Query: 1297 ESEKLGAELEEIIEALHARETAVKTLPVLLLEVTSVDVELDKQRLELATKEVQPYVQRYE 1356
++ + + + L + + ++ + +
Sbjct: 511 ADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSE----VVNVLKSLLSNLD 566
Query: 1357 TLKKNIAEAIDKFETQANEHEAYKQAYNEAYDWLRKAKLGAQANADCHGEQQTTKDKADK 1416
+KK + ++ + + +L N + + +
Sbjct: 567 EVKKEREGLENDLKSVNFDMTS---------KFLTALAQDGVINEEALSVTELDRVYGGL 617
Query: 1417 IKQITKSLPEGQKLIDKTVALKNNVLESTGPIGKENINQEINQITLDWTNLQNTLQDIDK 1476
++ +SL + + L+ + + N+ +E+ + + + ++
Sbjct: 618 TTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLK---NLATAYDNFVELVA 674
Query: 1477 HHAKCLSLWNDFLSSKNTLEKWIEGF 1502
+ + +N+ +
Sbjct: 675 NLKEGTKFYNELTEILVRFQNKCSDI 700
Score = 34.9 bits (79), Expect = 0.36
Identities = 32/302 (10%), Positives = 99/302 (32%), Gaps = 29/302 (9%)
Query: 706 DELEWENHSQNTLQWLDNIRS--DMKTLLERSKHIVDDIEKKKDDLKPIQKEAQQLSEWD 763
+++ + Q+ L ++ ++T+ + K + + +++ ++ L + + D
Sbjct: 412 EDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATD 471
Query: 764 SSIVPKVSDLETRWAAVKSAWDAKHSDLSSEIAQYSSYQNAVQDAEKWLLQISFQLMAHN 823
+ + K + R + A+ ++++ + A + Q+ + +
Sbjct: 472 NDLRAKFKERWQR--------TPSNELYKPLRAEGTNFRTVLDKAVQADGQV-KECYQSH 522
Query: 824 SLYINNRQQTLEQIQHHEKLLQDYSSYQNAVQDAEKWLLQISFQLMAHNSLYINNRQQTL 883
I + ++ + + + +L+ L+++ R+
Sbjct: 523 RDTIVLLCKPEPEL---NAAIPSANPAKTMQGSEVVNVLK---SLLSNLDEVKKEREGLE 576
Query: 884 EQIQHHEKLLQDVILSPDNKLAPC-----FSAEEGSPIKDKIDRLEKETKAQSDRIQDAL 938
++ + L+ + E ++++ K Q + + +
Sbjct: 577 NDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQ-EGLLKNI 635
Query: 939 KTLNQLIGHRKEFEVDVENVEAKLKELEVAVEG--DVKTNNVLMLQELLNKYAQLNEEAG 996
+ +Q K+ + E LK L A + ++ N L+E Y +L E
Sbjct: 636 QVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVAN----LKEGTKFYNELTEILV 691
Query: 997 EL 998
Sbjct: 692 RF 693
Score = 31.1 bits (69), Expect = 5.7
Identities = 24/226 (10%), Positives = 71/226 (31%), Gaps = 16/226 (7%)
Query: 146 EVLSHKRIIESLLDKSKSLPQINKDQALEKAIVSVNKRYEDLVDGILKTISQLEESLDIF 205
E +S + +S+L KS+S+ + Q +++ I + + + L+ESL +
Sbjct: 412 EDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNR-------EILDESLRLL 464
Query: 206 QQFQQLQKAYQEDQKQLWDKL-SSLTERELKGKLSSWCGYEESVATLLDWLKVTEKKLGD 264
+ + + K+ W + S+ + L+ + ++ + + + ++
Sbjct: 465 DEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTN---FRTVLDKAVQADGQVKECYQS 521
Query: 265 EMELKTTLDEKKAQLQVY-----RTIYQDATSHQQDLLQLKDKIESLHQPSEQSKQQLAT 319
+ L + + +L + L L ++ + + E + L +
Sbjct: 522 HRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKS 581
Query: 320 ITTRHGNVLKRAQKFTEAYEGIVSIHQAYTKAVLDTQEWIDATYNA 365
+ + A + + +
Sbjct: 582 VNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKK 627
Score = 30.7 bits (68), Expect = 6.4
Identities = 29/327 (8%), Positives = 86/327 (26%), Gaps = 34/327 (10%)
Query: 1713 LNDTENVLKNFTLQPTLNEKKQQRELKGKLSSWCGYEESVATLLDWLKVTEKKLGDEMEL 1772
L + T+ ++ K + +G + + + + LL + + ++
Sbjct: 407 LPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDE 466
Query: 1773 KTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKIESLHQPSEQSKQQLATITTRHGNVL 1832
+ D R + + L ++ + Q+ Q+ H + +
Sbjct: 467 EEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTI 526
Query: 1833 KRAQKKIEAEKDIGDCTNLDDLEKYKALLQEVISHNSDMETLNDKCEALMELAAHSPIRE 1892
K N + ++ + S S+++ + + E L
Sbjct: 527 VLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLEN--------- 577
Query: 1893 ETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQECDELEAG 1952
L+++ + + ++Q + K ++++ + L
Sbjct: 578 ---DLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKN 634
Query: 1953 IKEEQKNIETQYLQWNSFRETLAQMTAWLDSVEKNIKQEIATPWTTTQELRSKLLKLKEI 2012
I+ + K E + L + E+
Sbjct: 635 IQVSHQEFSK----------------------MKQSNNEANLREEVLKNLATAYDNFVEL 672
Query: 2013 LKKCEKGVGDHEAFVDKYEECSQKLAQ 2039
+ ++G + + K +
Sbjct: 673 VANLKEGTKFYNELTEILVRFQNKCSD 699
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.2 bits (90), Expect = 0.004
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 1596 ERKAMQDKISKLQSWLKQYIDYSGNKQALQSRLD 1629
E++A + KLQ+ LK Y D S A+++ ++
Sbjct: 18 EKQA----LKKLQASLKLYADDSAPALAIKATME 47
Score = 33.4 bits (75), Expect = 0.40
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 13/42 (30%)
Query: 880 QQTLEQIQHHEKLLQDVILSPDNKLAPCFSAEEGSPIKDKID 921
+Q L+++Q KL + D+ AP + IK ++
Sbjct: 19 KQALKKLQASLKL-----YADDS--APALA------IKATME 47
Score = 32.2 bits (72), Expect = 0.83
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 5/25 (20%)
Query: 1052 QSVKRLQHKV-----EEAKALLQKA 1071
Q++K+LQ + + A AL KA
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKA 44
Score = 30.3 bits (67), Expect = 3.6
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 26/55 (47%)
Query: 1281 RKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVKTLPVLLLEVTSVDVE 1335
++ ++KL ++ L+ L+A ++A P L ++ T +E
Sbjct: 19 KQALKKL---------QA-----SLK-----LYADDSA----PALAIKAT---ME 47
Score = 30.3 bits (67), Expect = 3.7
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 806 QDAEKWLLQISFQLMAHNS---LYINNRQQTLE 835
Q +K LQ S +L A +S L I T+E
Sbjct: 20 QALKK--LQASLKLYADDSAPALAIK---ATME 47
Score = 30.3 bits (67), Expect = 3.7
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 855 QDAEKWLLQISFQLMAHNS---LYINNRQQTLE 884
Q +K LQ S +L A +S L I T+E
Sbjct: 20 QALKK--LQASLKLYADDSAPALAIK---ATME 47
Score = 30.3 bits (67), Expect = 4.3
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 14/41 (34%)
Query: 1406 EQQTTKDKADKIKQITKSLPEGQKLI--DKTVALK-NNVLE 1443
E+Q +K++ SL KL D AL +E
Sbjct: 18 EKQA-------LKKLQASL----KLYADDSAPALAIKATME 47
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical
linker region, 2 tandem 3-helix coiled- coils,
structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1
a.7.1.1 PDB: 1aj3_A
Length = 213
Score = 39.5 bits (92), Expect = 0.005
Identities = 25/201 (12%), Positives = 67/201 (33%), Gaps = 9/201 (4%)
Query: 244 YEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKI 303
+ + W+K + + + L + + ++ + + +H+ + + D
Sbjct: 5 FFRDMDDEESWIKEKKLLV-SSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTG 63
Query: 304 ESL----HQPSEQSKQQLATITTRHGNVLKRAQKFTEAYEGIVSIHQAYTKAVLDTQEWI 359
+ L E+ +Q+LA + + A + E + Q + V + + WI
Sbjct: 64 KKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQ-FVANVEEEEAWI 122
Query: 360 DATYNAVNMWGDLTLERVSLHSNLERLKNLEKELGRIGHKTVALKN--NVLESTGPIGKE 417
+ V D ++ L++ + E + + + L E
Sbjct: 123 NEKMTLVASE-DYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVE 181
Query: 418 NINQEINQITLDWTNLQNTLQ 438
NI ++ + ++L+
Sbjct: 182 NITAKMKGLKGKVSDLEKAAA 202
Score = 34.9 bits (80), Expect = 0.17
Identities = 23/159 (14%), Positives = 60/159 (37%), Gaps = 1/159 (0%)
Query: 949 KEFEVDVENVEAKLKELEVAVEGDVKTNNVLMLQELLNKYAQLNEEAGELNMMISNVSIA 1008
+F D+++ E+ +KE ++ V + ++ +Q L K+ +L E I +V
Sbjct: 3 HQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDT 62
Query: 1009 TEHM-NLNDADRLTVNDSVSSMQKRYAQLSRTIEDRISTVNNKLQSVKRLQHKVEEAKAL 1067
+ + + N + + ++ + +L + R + L+ + + + EE +
Sbjct: 63 GKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWI 122
Query: 1068 LQKAESQLARPVSTQAEDISEALTVYQKLLDEINSWKNS 1106
+K + I L ++ + K+
Sbjct: 123 NEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDR 161
Score = 31.4 bits (71), Expect = 2.3
Identities = 40/219 (18%), Positives = 79/219 (36%), Gaps = 19/219 (8%)
Query: 346 QAYTKAVLDTQEWIDATYNAVNMWGDLTLERVSLHSNLERLKNLEKELGRIGHKTVALKN 405
+ + + D + WI V+ D + + + ++ K LE EL ++ +
Sbjct: 3 HQFFRDMDDEESWIKEKKLLVSS-EDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 406 --NVLESTGPIGKENINQEINQITLDWTNLQNTLQVIDKHHAKCLSIWNDFLSSKNTLEK 463
L IGKE I Q + Q W L+ + + L F+++ E
Sbjct: 62 TGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQ-FVANVEEEEA 120
Query: 464 WIEGFQKKIEAEKDIGDCTNLDDLEKYKALLQ-------EVISHNSDMETLNDKCEALME 516
WI + +E D GD L + LL+ + H + + E L++
Sbjct: 121 WINEKMTLVASE-DYGD-----TLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIK 174
Query: 517 LAAHSP--IREETLRLQALYAALVTSVQGLVSQVEKNLS 553
H I + L+ + L + +++++N +
Sbjct: 175 KNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENSA 213
Score = 31.4 bits (71), Expect = 2.4
Identities = 25/239 (10%), Positives = 76/239 (31%), Gaps = 38/239 (15%)
Query: 557 EFLAKKEEVEAWLHKAHATVQECAGNGSKNVLKERLDTVNMVAERIPEGQHLMSVLQDTF 616
+F ++ E+W+ + V ++ + + + + + DT
Sbjct: 4 QFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDT- 62
Query: 617 TKALDTTPSDQQDSLREAMTVLRDSWDRLNRDLKSTSTQLKSYIARWNELDDLYNRFNMW 676
K L + ++ +++ + D W L + + +L+ + + ++ W
Sbjct: 63 GKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANV-EEEEAW 121
Query: 677 LSGVENKLNEPSPVFTEIDLNTKWQQYVNDELEWENHSQNTLQWLDNIRSDMKTLLERSK 736
++ + T + + LL++ +
Sbjct: 122 INEKMTLVASEDYGDTLAAI--------------------------------QGLLKKHE 149
Query: 737 HIVDDIEKKKDDLKPIQKEAQQLSEWDS----SIVPKVSDLETRWAAVKSAWDAKHSDL 791
D KD + + + L + ++ +I K+ L+ + + ++ A + + L
Sbjct: 150 AFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKL 208
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle,
spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Length = 224
Score = 39.6 bits (92), Expect = 0.006
Identities = 36/219 (16%), Positives = 81/219 (36%), Gaps = 12/219 (5%)
Query: 831 QQTLEQIQHHEKLLQDYSSYQNAVQDAEKWLLQISFQLMAHNSLYINNRQQTLEQIQHHE 890
++ L + ++ L + VQD W+ ++ QL + ++ +++H+
Sbjct: 6 RKPLLKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTE--WGSDLPSVESHLENHK 63
Query: 891 KLLQDVI-----LSPDNKLAPCFSAEEGSPIKDKIDRLEKETKAQSDRIQDALKTLNQLI 945
+ + + L +A DK+ RLE + + ++ + L+ L
Sbjct: 64 NVHRAIEEFESSLKEAKISEIQMTAPLKLSYTDKLHRLESQYAKLLNTSRNQERHLDTL- 122
Query: 946 GHRKEFEVDVENVEAKLKELEVAVEGDVKTNNVLMLQELLNKYAQLNEEAGELNMMISNV 1005
F N L E E + + + + +A+L E + I V
Sbjct: 123 ---HNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKEESIKAV 179
Query: 1006 -SIATEHMNLNDADRLTVNDSVSSMQKRYAQLSRTIEDR 1043
IA + + N RLT+ ++MQ +++ + + +
Sbjct: 180 QEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCV 218
Score = 35.0 bits (80), Expect = 0.16
Identities = 29/224 (12%), Positives = 78/224 (34%), Gaps = 10/224 (4%)
Query: 223 WDKLSSLTERELKGKLSSWCGYEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVY 282
K + + L+ + V LL+W+ + +L D E + L ++ L+ +
Sbjct: 5 IRKPLLKSSLLDQ-NLTEEEVNMKFVQDLLNWVDEMQVQL-DRTEWGSDLPSVESHLENH 62
Query: 283 RTIYQDATSHQQDLLQLKDKIESLHQPSEQS-KQQLATITTRHGNVLKRAQKFTEAYEGI 341
+ +++ + L + K + P + S +L + +++ +L ++ + +
Sbjct: 63 KNVHRAIEEFESSLKEAKISEIQMTAPLKLSYTDKLHRLESQYAKLLNTSRNQERHLDTL 122
Query: 342 VSIHQAYTKAVLDTQEWIDATYNAVNMWGDLTLERVSLHSNLERLKNLEKELGRIGHKTV 401
+ + W++ + D + S+ L +EL +
Sbjct: 123 ----HNFVTRATNELIWLNEKEESEVA-YDWSERNSSVARKKSYHAELMRELEQKEESIK 177
Query: 402 ALKN--NVLESTGPIGKENINQEINQITLDWTNLQNTLQVIDKH 443
A++ L + I + W+ + Q +++H
Sbjct: 178 AVQEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCVEQH 221
Score = 33.0 bits (75), Expect = 0.85
Identities = 29/196 (14%), Positives = 77/196 (39%), Gaps = 9/196 (4%)
Query: 346 QAYTKAVLDTQEWIDATYNAVNMWGDLTLERVSLHSNLERLKNLEKELGRIGHKTVALKN 405
+ K V D W+D ++ + + S+ S+LE KN+ + + K
Sbjct: 23 EVNMKFVQDLLNWVDEMQVQLDR-TEWGSDLPSVESHLENHKNVHRAIEEFESSLKEAKI 81
Query: 406 NVLESTGPIGKENINQEINQITLDWTNLQNTLQVIDKHHAKCLSIWNDFLSSKNTLEKWI 465
+ ++ T P K + +++++ + L NT + + + L ++F++ W+
Sbjct: 82 SEIQMTAP-LKLSYTDKLHRLESQYAKLLNTSR----NQERHLDTLHNFVTRATNELIWL 136
Query: 466 EGFQKKIEAEKDIGDCTNLDDL-EKYKALLQEVISHNSDMETLNDKCEALMELA--AHSP 522
++ A +++ + L++E+ ++ + + E L+ A
Sbjct: 137 NEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQLLLENHPARLT 196
Query: 523 IREETLRLQALYAALV 538
I +Q ++ ++
Sbjct: 197 IEAYRAAMQTQWSWIL 212
Score = 31.9 bits (72), Expect = 1.6
Identities = 22/215 (10%), Positives = 74/215 (34%), Gaps = 7/215 (3%)
Query: 444 HAKCLSIWNDFLSSKNTLEKWIEGFQKKIEAEKDIGDCTNLDD-LEKYKALLQEVISHNS 502
+ L+ + L W++ Q +++ + D +++ LE +K + + + S
Sbjct: 15 LDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLENHKNVHRAIEEFES 74
Query: 503 DMETLNDKCEALMELAAHSPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLAKK 562
++ + ++ RL++ YA L E++L F+ +
Sbjct: 75 SLKEAKISEIQMTA-PLKLSYTDKLHRLESQYAKL----LNTSRNQERHLDTLHNFVTRA 129
Query: 563 EEVEAWLHKAHATVQECAGNGSKNVLKERLDTVNMVAERIPEGQHLMSVLQDTFTKALDT 622
WL++ + + + + + + + + + + +Q+ + L
Sbjct: 130 TNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQLLLE 189
Query: 623 TPSDQQDSLREAMTVLRDSWDRLNRDLKSTSTQLK 657
+ ++ ++ W + + + ++
Sbjct: 190 NHPAR-LTIEAYRAAMQTQWSWILQLCQCVEQHIQ 223
Score = 31.1 bits (70), Expect = 3.6
Identities = 23/182 (12%), Positives = 66/182 (36%), Gaps = 4/182 (2%)
Query: 1734 QQRELKGKLSSWCGYEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDA 1793
+ L L+ + V LL+W+ + +L D E + L ++ L+ ++ +++
Sbjct: 11 KSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQL-DRTEWGSDLPSVESHLENHKNVHRAI 69
Query: 1794 TSHQQDLLQLKDKIESLHQPSEQS-KQQLATITTRHGNVLKRAQKKIEAEKDIGDCTNLD 1852
+ L + K + P + S +L + +++ +L ++ + + + +
Sbjct: 70 EEFESSLKEAKISEIQMTAPLKLSYTDKLHRLESQYAKLLNTSRNQERHLDTLHNF--VT 127
Query: 1853 DLEKYKALLQEVISHNSDMETLNDKCEALMELAAHSPIREETLRLQALYAALVTSVQGLV 1912
L E + + + H+ + E + + A+ + L+
Sbjct: 128 RATNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQLL 187
Query: 1913 SQ 1914
+
Sbjct: 188 LE 189
Score = 30.7 bits (69), Expect = 4.4
Identities = 21/175 (12%), Positives = 53/175 (30%), Gaps = 6/175 (3%)
Query: 1303 AELEEIIEALHARETAVKTLPVLLLEVTSVDVELDKQRLELATKEVQPYVQRYETLKKNI 1362
+E +E A++ L E ++++ T ++ +Y L
Sbjct: 53 PSVESHLENHKNVHRAIEEFESSLKEAKISEIQMTAPLKLSYTDKLHRLESQYAKLLNTS 112
Query: 1363 AEAIDKFETQANEHEAYKQAYNEAYDWLRKAKLGAQANADCHGEQQTTKDKADKIKQITK 1422
+ + WL + K ++ D + K ++ +
Sbjct: 113 RNQER----HLDTLHNFVTRATNELIWLNE-KEESEVAYDWSERNSSVARKKSYHAELMR 167
Query: 1423 SLPEGQKLIDKTVALKNNVLESTGPIGKENINQEINQITLDWTNLQNTLQDIDKH 1477
L + ++ I + +L P + I + W+ + Q +++H
Sbjct: 168 ELEQKEESIKAVQEIAEQLLLENHP-ARLTIEAYRAAMQTQWSWILQLCQCVEQH 221
Score = 30.0 bits (67), Expect = 7.5
Identities = 23/178 (12%), Positives = 63/178 (35%), Gaps = 11/178 (6%)
Query: 1136 KLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNS--ATVQEKIDKYDKIIADIQEYE 1193
L L E + ++ ++ E ++ + S +V+ ++ + + I+E+E
Sbjct: 14 LLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLENHKNVHRAIEEFE 73
Query: 1194 AILATASDKGDQLSSDGTISDRNEITEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESEKL 1253
+ L A Q+++ + T++L + Q L T + +
Sbjct: 74 SSLKEAKISEIQMTAP----LKLSYTDKLHRLESQYAKLLNTSRNQERHLD----TLHNF 125
Query: 1254 GAELEEIIEALHARETAVPSSSRLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEA 1311
+ L+ +E + + +V + + + + E E+ ++ + E
Sbjct: 126 VTRATNELIWLNEKEESEVAYDWSERN-SSVARKKSYHAELMRELEQKEESIKAVQEI 182
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain,
phosphoprotein, protein transport, SH3 domain, transport,
transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A
2raj_A 2rai_A 2rak_A*
Length = 366
Score = 39.7 bits (92), Expect = 0.009
Identities = 19/165 (11%), Positives = 54/165 (32%), Gaps = 6/165 (3%)
Query: 1216 NEITEQLQSRKQQLHNLRKTVEKLRQQNEKR-AAESEKLGAELEEIIEALHA--RETAVP 1272
+ + ++ + L ++ ++ E +K+G L+ + + +
Sbjct: 171 EAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETD 230
Query: 1273 SSSRLHNLRKTVEKLRQQNEKRA-AESEKLGAELEEIIEALHARETAVKTLPVLLLEVTS 1331
+ + KT E++ ++ + L E L + T + +V
Sbjct: 231 LNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKE 290
Query: 1332 VDVELDKQRLELATKEVQPYVQRYETLKKNIAEAIDKFETQANEH 1376
D + ++ L K+ V+R + + ++ F +
Sbjct: 291 SDKLVATSKITLQDKQNM--VKRVSIMSYALQAEMNHFHSNRIYD 333
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil,
contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1
a.7.1.1
Length = 250
Score = 38.1 bits (88), Expect = 0.019
Identities = 34/242 (14%), Positives = 77/242 (31%), Gaps = 16/242 (6%)
Query: 557 EFLAKKEEVEAWLHKAHATVQECAGNG-SKNVLKERLDTVNMVAERIPEGQHLMSVLQDT 615
+F K E W + + + S ++ L + Q + +
Sbjct: 18 KFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAI 77
Query: 616 FTKALDTTPSDQQDSLREAMTVLRDSWDRLNRDLKSTSTQLKSYIARWNELDDLYNRFNM 675
+ L+ ++ + + D WDRL + L+ +D L+ F
Sbjct: 78 -AQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAK 136
Query: 676 WLSGVENKLNEPSPVFTEIDLNTKWQQYVNDELEWENHSQNTLQWLDNIRSDMKTLLERS 735
+ N + ++ V+ E Q+ + + ++ +
Sbjct: 137 RAAPFNNWMEGAMEDLQDMF-------IVHSIEE----IQSLITAHEQFKATLPEADGER 185
Query: 736 KHIVDDIEKKKDDLKPIQKEAQQLSEWDSSIVPKVSDLETRWAAVKSAWDAKHSDLSSEI 795
+ I+ + + K IQ ++S + + +L T+W VK + L E+
Sbjct: 186 QSIM---AIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEEL 242
Query: 796 AQ 797
A+
Sbjct: 243 AR 244
Score = 37.0 bits (85), Expect = 0.042
Identities = 27/232 (11%), Positives = 73/232 (31%), Gaps = 24/232 (10%)
Query: 835 EQIQHHEKLLQDYSSYQNAVQDAEKWLLQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQ 894
+I+ E+L ++ E W L+ + + + ++ HE
Sbjct: 4 NEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYE-SASLTEVRALLRKHEAFES 62
Query: 895 DVILSPDNKLAPCFSAEE---------------GSPIKDKIDRLEKETKAQSDRIQDALK 939
D+ D A+E I D+ DRL T+ + + ++ K
Sbjct: 63 DLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEK 122
Query: 940 TLNQLIGHRKEFEVDVENVEAKLKELEVAVEGDVKTNNVLMLQELLNKYAQLNEEAGELN 999
L + EF ++ ++ +++ +Q L+ + Q E +
Sbjct: 123 LLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEAD 182
Query: 1000 MMISNV--------SIATEHMNLNDADRLTVNDSVSSMQKRYAQLSRTIEDR 1043
++ + + + ++ ++ ++ ++ + + R
Sbjct: 183 GERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIR 234
Score = 36.6 bits (84), Expect = 0.071
Identities = 20/180 (11%), Positives = 61/180 (33%), Gaps = 10/180 (5%)
Query: 145 QEVLSHKRIIESLLDKSKSLPQINKDQA--LEKAIVSVNKRYEDLVDGILKTISQLEESL 202
++ +H+ +E + ++ L +++ A + + +++ L K LE
Sbjct: 62 SDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERME 121
Query: 203 DIFQQFQQLQKAYQEDQKQLWDKLSSLTERELKGKLSSWCGYEESVATLLDWLKVTEKKL 262
+ + QL + + + + + E + +L+ + + L
Sbjct: 122 KLLETIDQLHLEFAKRAAPF---NNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATL 178
Query: 263 GDEMELKTTLDEKKAQLQVYRTIYQDATSH-----QQDLLQLKDKIESLHQPSEQSKQQL 317
+ + ++ + +++ Y S + +L+ K + + Q Q L
Sbjct: 179 PEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSL 238
Score = 35.4 bits (81), Expect = 0.17
Identities = 28/204 (13%), Positives = 74/204 (36%), Gaps = 18/204 (8%)
Query: 1136 KLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNS---ATVQEKIDKYDKIIADIQEY 1192
+L+ L L E+F + + + D S V+ + K++ +D+ +
Sbjct: 8 RLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAH 67
Query: 1193 EAILATASDKGDQLSSDG-----TISDR--------NEITEQLQSRKQQLHNLRKTVEKL 1239
+ + + +L+ ++DR + + Q R++ L + K +E +
Sbjct: 68 QDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETI 127
Query: 1240 RQQNEKRAAESEKLGAELEEIIEALHARETA--VPSSSRLHNLRKTVEKLRQQNEKRAAE 1297
Q + + A + +E +E L + L + + + +
Sbjct: 128 DQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQS 187
Query: 1298 SEKLGAELEEIIEALHARETAVKT 1321
+ E+E++I++ + R ++
Sbjct: 188 IMAIQNEVEKVIQSYNIRISSSNP 211
Score = 32.7 bits (74), Expect = 1.2
Identities = 30/237 (12%), Positives = 77/237 (32%), Gaps = 18/237 (7%)
Query: 1748 YEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKI 1807
+ + +T W E+ L + +L E +A L+ + D +HQ + Q+
Sbjct: 19 FRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIA 78
Query: 1808 ESLHQPSEQSKQQLATITTRHGNVLKRAQKKIEAEKDIGDCTNLDDLEKYKALLQEVISH 1867
+ L +E + R + + + + L+ +EK + ++
Sbjct: 79 QEL---NELDYHDAVNVNDRCQKICDQWDRLGTLTQKRR--EALERMEKLLETIDQLHLE 133
Query: 1868 -NSDMETLNDKCEALMELAAHSPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFL 1926
N+ E ME + +Q L++ E+ + E
Sbjct: 134 FAKRAAPFNNWMEGAMEDLQDMF-----------IVHSIEEIQSLITAHEQFKATLPEAD 182
Query: 1927 AKKEEVEAWLHKAHATVQECDELEAGIKEE-QKNIETQYLQWNSFRETLAQMTAWLD 1982
+++ + A ++ +Q + + ++ +W+ ++ + L
Sbjct: 183 GERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQ 239
Score = 32.0 bits (72), Expect = 1.9
Identities = 20/125 (16%), Positives = 45/125 (36%), Gaps = 4/125 (3%)
Query: 244 YEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQ---QDLLQLK 300
+ + +T W E+ L + +L E +A L+ + D +HQ + + +
Sbjct: 19 FRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIA 78
Query: 301 DKIESLHQPSEQS-KQQLATITTRHGNVLKRAQKFTEAYEGIVSIHQAYTKAVLDTQEWI 359
++ L + + I + + QK EA E + + + + L+ +
Sbjct: 79 QELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRA 138
Query: 360 DATYN 364
N
Sbjct: 139 APFNN 143
Score = 32.0 bits (72), Expect = 1.9
Identities = 25/238 (10%), Positives = 69/238 (28%), Gaps = 10/238 (4%)
Query: 345 HQAYTKAVLDTQEWIDATYNAVNMWGDLTLERVSLHSNLERLKNLEKELGRIGHKTVALK 404
+ + + + W + + + + L + + E +L + +
Sbjct: 16 AEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIA 75
Query: 405 N--NVLESTGPIGKENINQEINQITLDWTNLQNTLQVIDKHHAKCLSIWNDFLSSKNTLE 462
L N+N +I W L Q + + +
Sbjct: 76 AIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFA 135
Query: 463 KWIEGFQKKI-EAEKDIGDCTNLDDLEKYKALLQEVISHNSDMETLNDKCEALMELAAHS 521
K F + A +D+ D + +E+ ++L+ + + + + +++M +
Sbjct: 136 KRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQ--- 192
Query: 522 PIREETLRLQALYAALVTSVQGLVSQVEKNLSDQ-TEFLAKKEEVEAWLHKAHATVQE 578
E ++ Y ++S + L + + + L + A
Sbjct: 193 ---NEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHA 247
Score = 31.6 bits (71), Expect = 2.7
Identities = 30/222 (13%), Positives = 65/222 (29%), Gaps = 5/222 (2%)
Query: 1379 YKQAYNEAYDWLRKAKLGAQANADCHGEQQTTKDKADKIKQITKSLPEGQKLIDKTVALK 1438
++Q + W + + K + L Q +++ A+
Sbjct: 19 FRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIA 78
Query: 1439 NNVLESTGPIGKENINQEINQITLDWTNLQNTLQDIDKHHAKCLSLWNDFLSSKNTLEKW 1498
L N+N +I W L Q + + L K
Sbjct: 79 QE-LNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKR 137
Query: 1499 IEGFQKKIES-EKDIGDCTNLDDLEKYKALLQEGLHKEADNKKVLIDSFNKGIIGMTELE 1557
F +E +D+ D + +E+ ++L+ H++ D + I+ + E
Sbjct: 138 AAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITA--HEQFKATLPEADGERQSIMAIQN-E 194
Query: 1558 SEEVKDLIQVGVHGLQVELNALLQNIEAEINKVANAAQERKA 1599
E+V + + + + + +KV R
Sbjct: 195 VEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQ 236
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 37.2 bits (85), Expect = 0.063
Identities = 37/216 (17%), Positives = 76/216 (35%), Gaps = 41/216 (18%)
Query: 975 TNNVLMLQELLNKYAQLNEEAGELNMMISNVSIATEHMNLNDADRLTVNDSVSSMQKRYA 1034
TN + L+ L +Y + N+++ L I + + + A+ Y
Sbjct: 63 TNRINKLKNSLFEYQKNNKDSHSLTTNIMEIL----RGDFSSANNR---------DNTYN 109
Query: 1035 QLSRTIEDRIST----VNNKLQSVKRLQHKVEEAKALLQKAESQL-----------ARPV 1079
++S + RI V K+Q ++ LQ V +++ E + +R +
Sbjct: 110 RVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRAL 169
Query: 1080 STQAEDISEALTVYQKLLDEINSWKNSQSDEDLVHLAD-SIKPLDEVVERIENHAVPKLK 1138
+ + + + QK L+++ + K+ D HL +KP+ ++V K
Sbjct: 170 AREVD--LKDYEDQQKQLEQVIA-KDLLPSRDRQHLPLIKMKPVPDLV-------PGNFK 219
Query: 1139 SLLLLREQFTTLIMQI--VGFITETTARVGEVDGNS 1172
S L + + + E G S
Sbjct: 220 SQLQKVPPEWKALTDMPQMRMELERPGGNEITRGGS 255
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 37.2 bits (86), Expect = 0.091
Identities = 31/192 (16%), Positives = 63/192 (32%), Gaps = 71/192 (36%)
Query: 662 RWNELDDLYNRFNMWLSGVENKLNEPSPVFTEIDLNTKWQQYVNDELEWENHSQNTLQWL 721
++ + + W V++K EP + D+ K++ + LE ++
Sbjct: 862 SYHNGNLKGRPYTGW---VDSKTKEPVD---DKDVKAKYETSI---LE------HSG--- 903
Query: 722 DNIRSDMKTLLERSKHIVDDIEKKK--------DDLKPI---QKEAQQLSEWD------- 763
IR L+E + EKK+ +DL+P ++ A+Q
Sbjct: 904 --IR-----LIEPELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAEQFKHQHGDKVDIF 956
Query: 764 ----------------SSIVPKVSDLETRWAA-VKSAWDAKHSDLSSEIA-------QY- 798
+ +PK + A + + W+AK +S +I +
Sbjct: 957 EIPETGEYSVKLLKGATLYIPKALRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFV 1016
Query: 799 --SSYQNAVQDA 808
S + A +
Sbjct: 1017 LVSVVE-AFIAS 1027
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 36.7 bits (84), Expect = 0.092
Identities = 43/320 (13%), Positives = 105/320 (32%), Gaps = 10/320 (3%)
Query: 1000 MMISNVSIATEHMNLNDADRLTVNDSVSSMQKRYAQLSRTIEDRISTVNNKLQSVKRLQH 1059
+ ++ + +S + + QL +T ++ + +L K
Sbjct: 77 ITSQTEGLSRLLRQHAEDLNSGPLSKLSLLIRERQQLRKTYSEQWQQLQQELT--KTHSQ 134
Query: 1060 KVEEAKALLQKAESQLARPVSTQAEDISEALTVYQKLLDEINSWKNSQSDEDLVHLADSI 1119
+E+ K+ + A+ E + K + WK V +
Sbjct: 135 DIEKLKSQYRALARDSAQAKRKYQEASKDKDRDKAKDKYVRSLWKLFAHHNRYV---LGV 191
Query: 1120 KPLDEVVERIENHAVPK-LKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEK 1178
+ + +P L+SL L E+ ++ +I+ E ++ V +
Sbjct: 192 RAAQLHHQHHHQLLLPGLLRSLQDLHEEMACILKEILQEYLEISSLVQDEVVAIHREMAA 251
Query: 1179 IDKYDKIIADIQEYEAILATASDKGDQLSSDGTISDRNE--ITEQLQSRKQQLHNLRKTV 1236
+ A+ Q + +A D ++ D ++ + E +LQ + + +++ T+
Sbjct: 252 AAARIQPEAEYQGFLRQYGSAPDVPPCVTFDESLLEEGEPLEPGELQLNELTVESVQHTL 311
Query: 1237 EKLRQQNEKRAAESEKLGAELEEIIEALHARETAVPSSSR--LHNLRKTVEKLRQQNEKR 1294
+ + + + ++ + L E R L R+ +++ Q +
Sbjct: 312 TSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQEALQGLQVA 371
Query: 1295 AAESEKLGAELEEIIEALHA 1314
KL A+ E + L
Sbjct: 372 LCSQAKLQAQQELLQTKLEH 391
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 36.8 bits (85), Expect = 0.10
Identities = 37/282 (13%), Positives = 88/282 (31%), Gaps = 19/282 (6%)
Query: 1807 IESLHQPSEQSKQQLATITTRHGNVLKRAQKKIEAEKDIGDCTNLDDLEKYKALLQEVIS 1866
++ + S ++ Q+ + TR+ ++ + + + + V+S
Sbjct: 1807 LDWFGEWSPEALFQVGSEFTRNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVS 1866
Query: 1867 HNSDM-ETLNDKCEALMELAAHSPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEF 1925
+ +T+ + L++ + Y + V L++ EK + +
Sbjct: 1867 SLVYIHQTIGEANIRLLK-----RQGRQNYVTPRHYLDFINQVVLLIN--EK----RDQL 1915
Query: 1926 LAKKEEVEAWLHKAHATVQECDELEAGIKEEQKNIETQYLQWNSFRETLAQMTAWLDSVE 1985
++ + L K T + +L+ + ++ + ++ + Q N + L QM D
Sbjct: 1916 EEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQAN---QKLKQMVQ--DQQA 1970
Query: 1986 KNIKQEIATPWTTTQELRSKLLKLKEILKKCEKGVGDHEAFVDKYEECSQKLAQVEAKYA 2045
IKQ+ A +L + ++ K + E EE Q
Sbjct: 1971 AEIKQKDAR--ELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKL 2028
Query: 2046 KLIEPETSYEELQKRQGQLTALLTEKVDMDVLLNACVDLCDK 2087
K E + L+K + +
Sbjct: 2029 KQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKN 2070
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation,
ribosome inhibitor, hydrolase; HET: CIT; 2.30A
{Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB:
1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Length = 551
Score = 35.4 bits (80), Expect = 0.22
Identities = 32/185 (17%), Positives = 55/185 (29%), Gaps = 15/185 (8%)
Query: 927 TKAQSDRIQDALKTLNQLIGHRKEFEVDVENVEAKLKELEVAVEGDVKTNNVLMLQELLN 986
+ Q + QD Q E N E EL A E + + +
Sbjct: 292 SPDQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQE--RQAKAVQ 349
Query: 987 KYAQLNEEAGELNMMISNVSIATEHMNLNDADRLTVNDSVSSMQKRYAQLSRTIEDRIST 1046
Y E +N ++A + +R D ++ + + + +
Sbjct: 350 VYNSRKSELDA-----ANKTLADAIAEIKQFNRFAH-DPMAGGHRMWQMAGLKAQRAQTD 403
Query: 1047 VNNKLQSVKRLQHKVEEAKALLQKAESQLARPVSTQAEDISEALTVYQKLLDEINSWKNS 1106
VNNK + + +A A L A + ED + + L DE N +
Sbjct: 404 VNNKQAAFDAAAKEKSDADAALSSAMESR-----KKKED--KKRSAENNLNDEKNKPRKG 456
Query: 1107 QSDED 1111
D
Sbjct: 457 FKDYG 461
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple
helical bundle, actin cappin binding, alternative
splicing, calcium; 2.30A {Homo sapiens}
Length = 149
Score = 33.3 bits (76), Expect = 0.31
Identities = 15/136 (11%), Positives = 44/136 (32%), Gaps = 12/136 (8%)
Query: 661 ARWNELDDLYNRFNMWLSGVENKLNEPSPVFTEIDLNTKWQQYVNDELEWENHSQNTLQ- 719
R ++ D Y+RF + KL + +Q+ + +W
Sbjct: 19 ERRQQVLDRYHRFKELSTLRRQKLED-------SYRFQFFQRDAEELEKWIQEKLQIASD 71
Query: 720 WLDNIRSDMKTLLERSKHIVDDIEKKKDDLKPIQKEAQQLSEWD----SSIVPKVSDLET 775
++++ L++ + +++ + + + + +I ++ +L
Sbjct: 72 ENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHR 131
Query: 776 RWAAVKSAWDAKHSDL 791
+W + K L
Sbjct: 132 QWELLLEKMREKGIKL 147
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A
{Homo sapiens}
Length = 386
Score = 34.8 bits (79), Expect = 0.32
Identities = 19/165 (11%), Positives = 50/165 (30%), Gaps = 6/165 (3%)
Query: 1216 NEITEQLQSRKQQLHNLRKTVEKL-RQQNEKRAAESEKLGAELEEI--IEALHARETAVP 1272
+ + + L +L R+ E +KLG+ + I + +
Sbjct: 191 DTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAFQAISHSFQMDPPFCSEA 250
Query: 1273 SSSRLHNLRKTVEKLRQQNEKRA-AESEKLGAELEEIIEALHARETAVKTLPVLLLEVTS 1331
+S + + +T E + + ++ + ++ L L + +V
Sbjct: 251 LNSAISHTGRTYEAIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKE 310
Query: 1332 VDVELDKQRLELATKEVQPYVQRYETLKKNIAEAIDKFETQANEH 1376
D+ R+ E +R + + ++ F +
Sbjct: 311 SQRMSDEGRMV--QDEADGIRRRCRVVGFALQAEMNHFHQRRELD 353
Score = 33.2 bits (75), Expect = 1.1
Identities = 29/211 (13%), Positives = 72/211 (34%), Gaps = 17/211 (8%)
Query: 1798 QDLLQLKDKIESLHQPSEQSKQQLATITTRHGNVLKRAQKKIEAE-KDIGDCTNLDDLEK 1856
QDL ++D++++ S++ + ++T ++++ E + +G +
Sbjct: 181 QDLQDVEDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSA--FQAISH 238
Query: 1857 YKALLQEVISH--NSDMETLNDKCEALMELAAHSPIREETLRLQAL--YAALVTSVQGLV 1912
+ S NS + EA+ E+ A P + L L Y L+++ ++
Sbjct: 239 SFQMDPPFCSEALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDII 298
Query: 1913 SQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQECDELEAGIKEEQKNIETQYLQWNSFRE 1972
+ + E +E +A + C + ++ E + + F+
Sbjct: 299 HLQKGAFAKVKESQRMSDEGRMVQDEADGIRRRCRVVGFALQAEMNHFHQRREL--DFKH 356
Query: 1973 TLAQMTAWLDSVEKNIK--QEIATPWTTTQE 2001
+ + + I Q + T
Sbjct: 357 MMQNY------LRQQILFYQRVGQQLEKTLR 381
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin,
ankyrin-binding domain, actin capping, AC binding,
cytoskeleton, disease mutation; 2.10A {Homo sapiens}
PDB: 3f57_A
Length = 218
Score = 33.8 bits (77), Expect = 0.46
Identities = 28/248 (11%), Positives = 67/248 (27%), Gaps = 41/248 (16%)
Query: 557 EFLAKKEEVEAWLHKAHATV-QECAGNGSKNVLKERLDTVNMVAERIPEGQHLMSVLQDT 615
+ + +++E W+ + G +V R + E GQ + +
Sbjct: 5 QLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAF 64
Query: 616 FTKALDTTPSDQQDSLREAMTVLRDSWDRLNRDLKSTSTQLKSYIARWNELDDLYNRFNM 675
+ +D S+ ++ E L + W L + + L + +
Sbjct: 65 IERLIDAGHSEA-ATIAEWKDGLNEMWADLLELIDTRMQLLAA-SYDLHRYFYTGAEILG 122
Query: 676 WLSGVENKLNEPSPVFTEIDLNTKWQQYVNDELEWENHSQNTLQWLDNIRSDMKTLLERS 735
+ +L E +T + +
Sbjct: 123 LIDEKHRELPEDVG-----------------------LDASTAE----------SFHRVH 149
Query: 736 KHIVDDIEKKKDDLKPIQKEAQQL-----SEWDSSIVPKVSDLETRWAAVKSAWDAKHSD 790
++ ++ Q A +L E +I K ++ W A+ A + +
Sbjct: 150 TAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQ 209
Query: 791 LSSEIAQY 798
L ++
Sbjct: 210 LVDTADKF 217
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 34.3 bits (79), Expect = 0.67
Identities = 25/167 (14%), Positives = 55/167 (32%), Gaps = 6/167 (3%)
Query: 114 KLYLDTAAKGREVVRQQLRALRDSKCSKTTLQEVLSHK-RIIESLLDKSKSLPQINKDQA 172
+ ++ A + AL ++ + + + I LL K + + ++ A
Sbjct: 843 EPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWA 902
Query: 173 LEKAIVSVNKRYEDLVDGILKTISQLEESL-----DIFQQFQQLQKAYQEDQKQLWDKLS 227
K++ + D + + + LE Q L + + ++ +
Sbjct: 903 TTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVP 962
Query: 228 SLTERELKGKLSSWCGYEESVATLLDWLKVTEKKLGDEMELKTTLDE 274
LTER+ W G + S T + L ++L +L
Sbjct: 963 ELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009
>2epi_A UPF0045 protein MJ1052; NPPSFA, national project on protein
structural and functiona analyses; 1.70A
{Methanocaldococcus jannaschii} PDB: 2eky_A
Length = 100
Score = 31.2 bits (71), Expect = 0.72
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 1551 IGMTELESEEVKDLIQV-GVHGLQVELNALLQNIEAEINKVANAAQER-KAMQDKISKLQ 1608
+G S+ VK I+V + L+VE NA+ +E +++++ A +E + + + ++
Sbjct: 16 LGKGASVSKYVKKAIEVFKKYDLKVETNAMGTVLEGDLDEILKAFKEAHSTVLNDVDRVV 75
Query: 1609 SWLKQYIDY-SGNKQALQSRLDKVNEI 1634
S LK ID + ++ +L + E+
Sbjct: 76 SSLK--IDERKDKENTIERKLKAIGEL 100
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Length = 217
Score = 33.0 bits (76), Expect = 0.72
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 1106 SQSDEDLVHLADSIKPLDEVVERIENHAVPK 1136
D L L D +EVV+ ++ A P+
Sbjct: 190 GPEDLQLFRLTDEP---EEVVQALKAEAPPR 217
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell
division, chapero isomerase, rotamase, ribonucleoprotein,
binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Length = 433
Score = 33.4 bits (77), Expect = 0.77
Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 32/147 (21%)
Query: 1216 NEITEQLQSRKQQLHNLR-----KTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETA 1270
+ E + K++ + ++ EK R++ ++R + K +E + +
Sbjct: 294 ILVNEAINRLKREGRYEQIVSSYESEEKFREELKERILDDIKRDRVIEVLAQE------- 346
Query: 1271 VPSSSRLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAV----------K 1320
+ E+L ++ E+ A G + + AR+ K
Sbjct: 347 -------KGISVNDEELEKEAEELAPFW---GISPDRAKSLVKARQDLREELRWAILKRK 396
Query: 1321 TLPVLLLEVTSVDVELDKQRLELATKE 1347
L +LL EV VE + + KE
Sbjct: 397 VLDLLLQEVKVKVVEPKGEGDDSEGKE 423
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A
3kso_A 3kss_A
Length = 1054
Score = 33.7 bits (78), Expect = 0.86
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 12/51 (23%)
Query: 1405 GE--QQTTKDKADKIKQITKSLPEG---------QKLIDKTVA-LKNNVLE 1443
G+ ++ DK++ + SLPEG +LID+ + L +LE
Sbjct: 301 GKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDNLSGKLLE 351
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related,
rossmann fold, GTP bindi structural protein; 2.30A
{Clostridium botulinum C}
Length = 360
Score = 33.1 bits (75), Expect = 0.88
Identities = 29/238 (12%), Positives = 75/238 (31%), Gaps = 20/238 (8%)
Query: 948 RKEFEVDVENVEAKLKELEVAVEGDVKTNNVLMLQELLNKYAQLNEEAGELNMMISNVSI 1007
E + N A ++ + + L+ K + +N+E L N+S
Sbjct: 132 ATEDIDEHMNAIACWNDIMRSTNEGKDISIYLLDNNKREKESDINKEFATLFNDFMNMSE 191
Query: 1008 ATEHMNLNDADRLTVNDS--VSSMQKRYAQLSRTIEDRISTVNNKLQSVKRLQHKVEEAK 1065
+ +++ + + + + + ED + L+ ++ +
Sbjct: 192 SHAEGVVDEDEISKLLTMKKSNVILE-----FDDKEDIQVALAKSLKESIFAEYTTNTCE 246
Query: 1066 ALLQKAESQLARPVSTQAEDISEALTVYQKLLDEINSWKNSQSDEDLVHLADSIKPLDEV 1125
+ ++ E I + ++ NS KN + +A I+P
Sbjct: 247 FMG------ISTTRVVDVEAIKSIVGYPRRTFKGYNSKKN-------IVVATGIEPQKTT 293
Query: 1126 VERIENHAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYD 1183
V+ + K+K + + +I++ + E V + ++ + D
Sbjct: 294 VQMMNEIIEDKMKQRREVTSKSENMIIEPIALDDEDNKSVISSNEKEISIDNVEKEID 351
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled
post-transcriptional, gene regulation, chaperone; HET:
EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 32.8 bits (74), Expect = 1.1
Identities = 24/180 (13%), Positives = 59/180 (32%), Gaps = 4/180 (2%)
Query: 1217 EITEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVPSSSR 1276
+ +++ S + + RK ++K E + L E + + E + ++
Sbjct: 15 HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNA 74
Query: 1277 LHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVKTLPVLLLEVTSVDVEL 1336
+ + + K E L E + E + ++ L + + +L
Sbjct: 75 ----KIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDL 130
Query: 1337 DKQRLELATKEVQPYVQRYETLKKNIAEAIDKFETQANEHEAYKQAYNEAYDWLRKAKLG 1396
K+ LEL ++ +K F+ + + E + Y+ +R+
Sbjct: 131 KKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRRWAKN 190
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering,
endoplasmic reticulum, ER-golgi transport, membrane,
phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Length = 706
Score = 33.3 bits (75), Expect = 1.2
Identities = 27/253 (10%), Positives = 70/253 (27%), Gaps = 22/253 (8%)
Query: 1798 QDLLQLKDKIESLHQPSEQSKQQLATITTRHGNVLKRAQKKIEAEKDIGD-CTNLDDLEK 1856
DLL + D+I+ + + +L + + +DI + +++ LE+
Sbjct: 10 DDLLNINDRIKQVQNERNELASKLQNLKQSLASNDTEVALSEVIAQDIIEVGASVEGLEQ 69
Query: 1857 YK------ALLQEVISHNSDMETLNDKCEALMELAAHSPIREETLRLQALYAALVTSVQG 1910
+ +L ++ + + L + L Q + V+
Sbjct: 70 LRAKYGDLQILNKLEKVAVQQTQMQAGVDKLDSFERQL----DELAEQPPDQFTLDDVKA 125
Query: 1911 LVSQVEKNLSDQTEFLAKKEEVEAWLHKAHATVQE-CDELEAGIKEEQKNIETQYLQWNS 1969
L S++ + + + A+ + D + + N+
Sbjct: 126 LHSKLTSVFATVPQINNIDSQYAAYNKLKSKVTGKYNDVIIQRLATN---------WSNT 176
Query: 1970 FRETLAQMTAWLDSVEKNIKQEIATPWTTTQELRSKLLKLKEILKKCEKGVGDHEAFVDK 2029
F + L + W + + +L L L++ +
Sbjct: 177 FDQKLLEA-QWDTQKFASTSVGLVKCLRENSTKLYQLSLLYLPLEEETQNGDSERPLSRS 235
Query: 2030 YEECSQKLAQVEA 2042
L ++
Sbjct: 236 NNNQEPVLWNFKS 248
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS,
serrs, translation, ATP-binding, nucleotide-binding,
structural genomics; HET: ATP; 1.95A {Trypanosoma brucei}
PDB: 3lsq_A*
Length = 484
Score = 33.1 bits (76), Expect = 1.3
Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 7/134 (5%)
Query: 1328 EVTSVD--VELDKQRLELATKEVQPYVQRYETLKKNIAEAIDKFETQANEHEAYKQAYNE 1385
+ VD +E DK+ + + K + E + E Q
Sbjct: 32 DPDIVDAIIEADKKWRRTQF-LTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEA 90
Query: 1386 AYDWLRKAKLGAQANADCHGEQQTTKDKADKIKQITKSLPEGQKLIDKTVALKNNVLEST 1445
+ K + Q +Q +KD +D++ + K + ++ DK + N+L +
Sbjct: 91 YENGTLKGEQVEQLCVL--QLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHES 148
Query: 1446 GPIGK--ENINQEI 1457
PI + E N +
Sbjct: 149 VPIAQDEETGNTVV 162
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 33.1 bits (76), Expect = 1.3
Identities = 33/236 (13%), Positives = 85/236 (36%), Gaps = 24/236 (10%)
Query: 1236 VEKLRQQNE--KRAAESEKLGAELEEII---EALHARETAVPSSSRLHNLRKTVEKLRQQ 1290
+++LRQ+ E RA + + +LE ++ E LH ++ + + + ++++ ++K+
Sbjct: 4 LKRLRQEPEVFHRAIREKGVALDLEALLAVDEQLHKQQEVI--ADKQMSVKEDLDKV--- 58
Query: 1291 NEKRAAESEKLGAELEEIIEALHARETAVKTLPVLLLEVTSVDVELDKQ---------RL 1341
E E + I+ H E P +++ + L R
Sbjct: 59 -EPAVIE----AQNAVKSIKKQHLVEVRSMANPPAAVKLALESIALLLGESTTDWKQIRS 113
Query: 1342 ELATKEVQPYVQRYETLKKNIAEAIDKFETQANEHEAYKQAYNEAYDWLRKAKLGAQANA 1401
+ + P + + + + A + + + N A A A
Sbjct: 114 IIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQL 173
Query: 1402 DCHGEQQTTKDKADKIKQITKSLPEGQKLIDKTVALKNNVLESTGPIGKENINQEI 1457
+ + + ++++++ + Q+ ++ + P+G E N+EI
Sbjct: 174 NYADMLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVPLPPWPGAPVGGEEANREI 229
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 32.6 bits (74), Expect = 1.6
Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 3/109 (2%)
Query: 1211 TISDRNEITEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETA 1270
I D E+ K L L + + EK G ELEE+ ++ A
Sbjct: 83 EIPDPLSPGERGIQAK--LKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANA 140
Query: 1271 -VPSSSRLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETA 1318
+ + L K V + + + +L L++ I ET
Sbjct: 141 EIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETV 189
Score = 31.1 bits (70), Expect = 5.0
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 4/99 (4%)
Query: 1216 NEITEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVPS-- 1273
N ++Q L K V + + + +L L++ I ET +
Sbjct: 135 NGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEY 194
Query: 1274 SSRLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEAL 1312
++ L+ +E R ++ A + E G +++EA
Sbjct: 195 RDKIDALKNAIEVERDGMQEEAIQ-EIAGMT-ADVLEAA 231
>1szi_A TIP47, mannose-6-phosphate receptor binding protein 1; 4-helix
bundle, alpha/beta domain, PAT protein, lipid binding,
peptide binding; 2.80A {Mus musculus} SCOP: a.24.23.1
Length = 247
Score = 31.7 bits (71), Expect = 2.5
Identities = 33/189 (17%), Positives = 61/189 (32%), Gaps = 23/189 (12%)
Query: 1811 HQPSEQSKQQLATITTRHGNVLKRAQKK---IEAEKDIGDCTNLDDLEKYKALLQEVISH 1867
+ E S +L + L++ +E+ K D + EK +
Sbjct: 62 NHAYEHSLGKLQNARQKAQETLQQLTSVLGLMESVKQGVDQRLGEGQEKLHQMWLSWNQK 121
Query: 1868 NSDMETLNDKCEALMELAAHSPIREETLRLQALYAALVTSVQGLVSQVEKNLSDQTEFLA 1927
+ +E A S R+ T +LQ++ AL S+QGL S V + +
Sbjct: 122 TPQDAEKDPAKPEQVEARALSMFRDITQQLQSMCVALGASIQGLPSHVREQAQQARSQV- 180
Query: 1928 KKEEVEAWLHKAHATVQECDELEAGIKEEQKNIETQYLQWNSFRETLAQMTAWLDSVEKN 1987
+++A H+ + RE +A+ LD+ +
Sbjct: 181 --NDLQATFSGIHSFQDLSAGV-----------------LAQTRERIARAREALDNTVEY 221
Query: 1988 IKQEIATPW 1996
+ Q W
Sbjct: 222 VAQNTPAMW 230
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A
{Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB:
1sc5_A
Length = 239
Score = 31.0 bits (71), Expect = 3.1
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 16/91 (17%)
Query: 1053 SVKRLQHKVEEAKALLQKAESQLARPVSTQAEDISEALTV----YQKLLDEINSWK---- 1104
V+ + +++E L + +L R + E++++ L + K LD+IN
Sbjct: 93 QVREKERRIKEVVEKL---KEKLGREPT--DEEVAKELGISTEELFKTLDKINFSYILSL 147
Query: 1105 ---NSQSDEDLVHLADSIKPLDEVVERIENH 1132
D L S ++E V + E
Sbjct: 148 EEVFRDFARDYSELIPSSTNVEEEVIKRELT 178
Score = 30.6 bits (70), Expect = 5.3
Identities = 18/100 (18%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 1224 SRKQQLHNLRKTVEKLRQQNEKRAAESE---KLGAELEEIIEALHARETAVPSS--SRLH 1278
+++ +++ VEKL+++ + + E +LG EE+ + L + S
Sbjct: 93 QVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFR 152
Query: 1279 NLRKTVEKL--RQQNEKRAAESEKLGAELEEIIEALHARE 1316
+ + +L N + +L +++E + L RE
Sbjct: 153 DFARDYSELIPSSTNVEEEVIKRELTEKVKEAVSKLPERE 192
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2,
protein structure initiative, midwest CENT structural
genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}
Length = 414
Score = 31.6 bits (72), Expect = 3.2
Identities = 6/50 (12%), Positives = 16/50 (32%)
Query: 1265 HARETAVPSSSRLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHA 1314
H+ + + +E + ++ +A +SE + L
Sbjct: 10 HSSGRENLYFQGMGRVLDRIEVVAEEIRGQAVQSEADCRLTDAAAGLLRD 59
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga
maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Length = 780
Score = 31.8 bits (73), Expect = 3.3
Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 2/101 (1%)
Query: 1204 DQLSSDGTISDRNEITEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEA 1263
+Q+++ E+ + L K L+ ++ +++ A + E+IE
Sbjct: 35 NQVNTRRIHQLLKELDDPLLENKDLEEKLQAFLDYVKEIPNLPEARKRYRIQKSLEMIEK 94
Query: 1264 LHARETA--VPSSSRLHNLRKTVEKLRQQNEKRAAESEKLG 1302
L + + S +L ++ + R + +KLG
Sbjct: 95 LRSWFLIDYLECSGEEVDLSTDIQYAKGVGPNRKKKLKKLG 135
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein,
ribosomal protein, RNA-binding, binding, metal-binding,
zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y
3d5c_X 3mr8_V 3ms0_V
Length = 354
Score = 31.4 bits (72), Expect = 3.4
Identities = 20/103 (19%), Positives = 45/103 (43%), Gaps = 17/103 (16%)
Query: 1049 NKLQSVKRLQHKVEEAKALL--------QKAESQLARPVSTQAEDISEALTVYQKLLDEI 1100
+KL ++ + E +ALL + L+R + + ++ + Y+K+L+++
Sbjct: 3 DKLDRLEE---EYRELEALLSDPEVLKDKGRYQSLSRRYA-EMGEVIGLIREYRKVLEDL 58
Query: 1101 NSWKNSQSDEDLVHLA-DSIKPLDEVVERIENHAVPKLKSLLL 1142
++ D +L +A + L E +E +L+ LL
Sbjct: 59 EQAESLLDDPELKEMAKAEREALLARKEALEK----ELERHLL 97
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 31.5 bits (72), Expect = 3.6
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 1226 KQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVPSSSRLHNLRKTVE 1285
L V LRQ+ E+ +E+ AELE E L LHN TV
Sbjct: 2 GSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNME---RKELHN---TVM 55
Query: 1286 KLR 1288
LR
Sbjct: 56 DLR 58
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 31.4 bits (71), Expect = 3.6
Identities = 19/153 (12%), Positives = 39/153 (25%), Gaps = 18/153 (11%)
Query: 1169 DGNSATVQEKIDKYDKIIADI------QEYEAILATASDKGDQLSSDGTISDRNEITEQL 1222
+G A + K + + I + + L S S+ EI +
Sbjct: 106 NGKKAAIAAKPTSVKQEVEKILGIEHRTFIRTVFLPQGEIDKLLISPP--SEITEIISDV 163
Query: 1223 QSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVPSSSRLHNLRK 1282
++ E L + + + +KL E+
Sbjct: 164 F----------QSKETLEKLEKLLKEKMKKLENEISSGGAGGAGGSLEKKLKEMSDEYNN 213
Query: 1283 TVEKLRQQNEKRAAESEKLGAELEEIIEALHAR 1315
+ +K G LE +++ A
Sbjct: 214 LDLLRKYLFDKSNFSRYFTGRVLEAVLKRTKAY 246
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii
atcc 33406}
Length = 362
Score = 31.1 bits (71), Expect = 3.8
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 932 DRIQDALKTLNQLIGHR-KEFEVDVENVEAKLKEL 965
+ AL +I HR K+FE + LK L
Sbjct: 21 QHMITALDEKIGVISHRSKKFEEVYKTASDNLKTL 55
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix
bundle, alpha helix repeat, helical linker, actin
capping; 2.80A {Homo sapiens} PDB: 1owa_A
Length = 161
Score = 30.3 bits (68), Expect = 3.8
Identities = 16/135 (11%), Positives = 44/135 (32%), Gaps = 12/135 (8%)
Query: 662 RWNELDDLYNRFNMWLSGVENKLNEPSPVFTEIDLNTKWQQYVNDELEWENHSQNTLQ-W 720
R E+ Y F ++ KL + +++ +D +W N L
Sbjct: 30 RRQEVLTRYQSFKERVAERGQKLED-------SYHLQVFKRDADDLGKWIMEKVNILTDK 82
Query: 721 LDNIRSDMKTLLERSKHIVDDIEKKKDDLKPIQKEAQQLSEWD----SSIVPKVSDLETR 776
++++ ++ + + +++ K + ++K ++ + +L
Sbjct: 83 SYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHL 142
Query: 777 WAAVKSAWDAKHSDL 791
W + K L
Sbjct: 143 WDLLLELTLEKGDQL 157
Score = 29.5 bits (66), Expect = 8.1
Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 5/129 (3%)
Query: 417 ENINQEINQITLDWTNLQNTLQVIDKHHAKCLSIWNDFLSSKNTLEKWIEGFQKKIEAEK 476
E I + ++ + + + + + + F + L KWI + I +K
Sbjct: 25 EEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQV-FKRDADDLGKWIME-KVNILTDK 82
Query: 477 DIGDCTNLDD-LEKYKALLQEVISHNSDMETLNDKCEALMEL--AAHSPIREETLRLQAL 533
D TN+ +K+++L EV + + M L E + +AH + L+ L
Sbjct: 83 SYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHL 142
Query: 534 YAALVTSVQ 542
+ L+
Sbjct: 143 WDLLLELTL 151
>2b3t_B RF-1, peptide chain release factor 1; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: e.38.1.1
Length = 360
Score = 31.4 bits (72), Expect = 4.0
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 17/103 (16%)
Query: 1049 NKLQSVKRLQHKVEEAKALLQKAES--------QLARPVSTQAEDISEALTVYQKLLDEI 1100
KL+++ + EE +ALL A++ L+R + Q D+S T +Q++ ++I
Sbjct: 7 AKLEALHE---RHEEVQALLGDAQTIADQERFRALSREYA-QLSDVSRCFTDWQQVQEDI 62
Query: 1101 NSWKNSQSDEDLVHLA-DSIKPLDEVVERIENHAVPKLKSLLL 1142
+ + D ++ +A D ++ E E++E +L+ LLL
Sbjct: 63 ETAQMMLDDPEMREMAQDELREAKEKSEQLEQ----QLQVLLL 101
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins,
DNA breaks, DOUB stranded, DNA repair, DNA repair
enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB:
3qg5_C
Length = 379
Score = 31.3 bits (71), Expect = 4.1
Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
Query: 125 EVVRQQLRALRDSKCSKTTLQEVLSHKRIIES-----LLDKSKSLPQINK--DQALEKAI 177
+ L+ L K + L+ + R + S LP + D ++
Sbjct: 260 DASPLPLKTLYYKKIDTSALKSIRDSCRNFPGYVRVVYEEDSGILPDLMGEIDNLVKIER 319
Query: 178 VSVNKRYEDLVDGILKTISQLEESLDIFQQFQQLQKAYQEDQKQLWDKLSSL 229
S + E L + + +L++ LD F+ F++ K +E+ ++L L L
Sbjct: 320 KSRREIEEVLRESPEEFKEELDK-LDYFELFKEYLKKREENHEKLLKILDEL 370
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2,
protein structure initiative, midwest center for STR
genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Length = 237
Score = 30.7 bits (70), Expect = 4.5
Identities = 14/121 (11%), Positives = 40/121 (33%), Gaps = 16/121 (13%)
Query: 1187 ADIQEYEAILATASDKGDQLSSDGTISDRNE-----ITEQLQSRK--QQLHNLRKTVEKL 1239
D+ + + + D G I N + + +++ + + E+
Sbjct: 122 DDLAAAASYIEQLEVETDF----GQIGRLNRMFHLSLYAKTHNKRLMRLVEEGLNEEERF 177
Query: 1240 RQQNEKRAAESEKLGAELEEIIEALHAR--ETAVPSSSRLHNLRKTVEKLRQQ-NEKRAA 1296
+ N + + +++ + E V + + H L + V+ + Q ++A
Sbjct: 178 LRFNLSSMGLGKLSQDDHWQLLRLAEQKAVEPCV-EALQYH-LNRGVQAVTQYLQSQKAG 235
Query: 1297 E 1297
Sbjct: 236 N 236
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton,
hemidesmosomes epidermolysis bullosa, structural protein;
2.05A {Homo sapiens} PDB: 2odu_A
Length = 235
Score = 30.5 bits (68), Expect = 5.1
Identities = 29/235 (12%), Positives = 74/235 (31%), Gaps = 21/235 (8%)
Query: 1241 QQNEKRAAESEKLGAELEEIIEALHARETAVPSSSRLHNLRKTVEKLRQ--QNEKRAAES 1298
+ + R E +L L + + A S + + + + E A E+
Sbjct: 7 NELQLRWQEYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEA 66
Query: 1299 EKLGAELEEIIEALHARETAVKTLPVLLLEVTSVDVELDKQRLELATKEVQPYVQRYETL 1358
+K + I ++L A + +DVE + +L +A E + ++
Sbjct: 67 DK--NRSKGIYQSLEGAVQAGQLKVPP--GYHPLDVEKEWGKLHVAILEREKQLRSEFER 122
Query: 1359 KKNIAEAIDKFETQANEHEAYKQAYNEAYDWLRKAKLGAQANADCHGEQQTTKDKADKIK 1418
+ + + K + +A E + L +A Q++ +
Sbjct: 123 LEALQRIVTKLQMEAGLAE----------EQLNQADALLQSDVR----LLAAGKVPQRAG 168
Query: 1419 QITKSLPEGQKLIDKTVALKNNVLESTGPIGKENINQEINQITLDWTNLQNTLQD 1473
++ + L + +I L+ E + + + ++ ++
Sbjct: 169 EVERDLDKADSMIRLLFNDV-QTLKDGRHPQGEQMYRRVYRLHKRLVAIRTEYNL 222
Score = 30.1 bits (67), Expect = 6.9
Identities = 18/223 (8%), Positives = 59/223 (26%), Gaps = 7/223 (3%)
Query: 1026 VSSMQKRYAQLSRTIEDRISTVNNKLQSVKRLQHKVEEAKALLQKAE---SQLARPVSTQ 1082
+ + Y +L + + + +R EE + L +
Sbjct: 9 LQLRWQEYRELVLLLLQWMRHHTAAFEE-RRFPSSFEEIEILWSQFLKFKEMELPAKEAD 67
Query: 1083 AEDISEALTVYQKLLDEIN-SWKNSQSDEDLVHLADSIKPLDEVVERIENHAVPKLKSLL 1141
+ + D+ + E+ +L++L
Sbjct: 68 KNRSKGIYQSLEGAVQAGQLKVPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLEALQ 127
Query: 1142 LLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKIIADIQEYEAILATASD 1201
+ + + + A + D + + ++ D+ + ++++ +
Sbjct: 128 RIVTKLQMEAGLAEEQLNQADALLQS-DVRLLAAGKVPQRAGEVERDLDKADSMIRLLFN 186
Query: 1202 KGDQLSSDGTISDRNEITEQLQSRKQQLHNLRKTVEKLRQQNE 1244
L DG ++ ++ ++L +R +
Sbjct: 187 DVQTL-KDGRHPQGEQMYRRVYRLHKRLVAIRTEYNLRLKAGV 228
>3v0a_B NTNH; botulinum neurotoxin, toxin, neurotoxin associated protein,
progenitor toxin complex, VHH bound interlocked complex;
HET: MES; 2.70A {Clostridium botulinum} PDB: 3v0b_B
Length = 1196
Score = 31.0 bits (69), Expect = 5.3
Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 25/155 (16%)
Query: 1415 DKIKQITKSLPEGQKLIDKTVALKNNVLESTGPIGKENINQEINQITLDWTNLQNTLQDI 1474
D I +S+ + LI + + K + L I +N+ NTL+DI
Sbjct: 684 DLICMAKRSVLAQETLIKRIIQKKLSYLIGNSNISSDNLALMNL-------TTTNTLRDI 736
Query: 1475 DKHHAKCLSLWNDFLSS-------KNTLEKWIEGFQKKIESEKD-----IGDCTNLDDLE 1522
++ + FL++ N K+I ++ I + I CTN+++ E
Sbjct: 737 SNESQIAMNNVDSFLNNAAICVFESNIYPKFISFMEQCINNINIKTKEFIQKCTNINEDE 796
Query: 1523 KYKALLQEGLHK------EADNKKVLIDSFNKGII 1551
K + + Q + N K L S +I
Sbjct: 797 KLQLINQNVFNSLDFEFLNIQNMKSLFSSETALLI 831
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo
sapiens}
Length = 522
Score = 30.5 bits (69), Expect = 6.8
Identities = 20/160 (12%), Positives = 45/160 (28%), Gaps = 15/160 (9%)
Query: 1299 EKLGAELEEIIEALHARETAVKTLPVLLLEVTSVDVELDKQRLELATKEVQPYVQRYETL 1358
G + I E R + L+ + D + +
Sbjct: 10 VDKGGDPALIRETQEKRFKDPGLVDQLV--------KADSEWRRCRF-RADNLNKLKNLC 60
Query: 1359 KKNIAEAIDKFETQANEHEAYKQAYNEAYDWLRKAKLGAQANADCHGEQQTTKDKADKIK 1418
K I E + + E ++ E A AN ++ + I
Sbjct: 61 SKTIGEKM-----KKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAIL 115
Query: 1419 QITKSLPEGQKLIDKTVALKNNVLESTGPIGK-ENINQEI 1457
+ + + + + N+L + PI E+++ ++
Sbjct: 116 KCDAERIKLEAERFENLREIGNLLHPSVPISNDEDVDNKV 155
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; 2.4A {Mus musculus} SCOP:
a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Length = 386
Score = 30.7 bits (68), Expect = 6.8
Identities = 27/204 (13%), Positives = 75/204 (36%), Gaps = 16/204 (7%)
Query: 765 SIVPKVSDLETRWAAVKSAWDAKHSDLSSEIAQYSSYQNAVQDAEKWLLQISFQLMAHNS 824
+++ +L+ R + E+ + + E +Q+ +
Sbjct: 181 ALITPAEELDFRVHIRSELMRLGLHQVLQELREIEN--------EDMKVQLCVFDEQGDE 232
Query: 825 LYINNRQQTLEQIQHHEKLLQDYSSYQNAVQD--AEKWLLQISFQLMAHNSLYINNRQQT 882
+ + + + + + + + N V+D AE L I + H L N+ +
Sbjct: 233 DFFDLKGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSI----LQHLLLVRNDYEAR 288
Query: 883 LEQIQHHEKLLQDVILSPDNKLAPCFSAEEGSPIKDKIDRLEKETKAQ--SDRIQDALKT 940
+ + E+ + ++L + I+ +D++ +TK + + + K
Sbjct: 289 PQYYKLIEECVSQIVLHKNGTDPDFKCRHLQIDIERLVDQMIDKTKVEKSEAKATELEKK 348
Query: 941 LNQLIGHRKEFEVDVENVEAKLKE 964
L+ + R E +V+++ +E ++
Sbjct: 349 LDSELTARHELQVEMKKMENDFEQ 372
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain
(ABD), F-actin- crosslinking, structural genomics; 2.40A
{Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Length = 506
Score = 30.4 bits (68), Expect = 6.9
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 11/112 (9%)
Query: 144 LQEVLSHKRIIESLLDKSKSLPQINKDQALEKAIVS--------VNKRYEDLVDGILKTI 195
L V I E ++ + L +++ + S VN +DL +G +
Sbjct: 52 LINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHLV 111
Query: 196 SQLEESLDIFQQFQQLQKAYQEDQKQLW---DKLSSLTERELKGKLSSWCGY 244
L L Q L +L D + L + L W +
Sbjct: 112 LGLISQLIKIQLLADLNLKKTPQLVELLEDSDDVEELLRLPPEKVLLKWMNF 163
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 29.5 bits (67), Expect = 7.1
Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 17/108 (15%)
Query: 1186 IADIQEYEAILATASDKGDQLSSDGTISDRNEITEQLQSRKQQLHNLRKTVEKLRQQNEK 1245
I ++E E +L AS L + ++ + ++ ++ + RK +E+L+
Sbjct: 6 IEAVEEMERLLREASS---ILRVE-----PAKLPKTVERFFEEWKDQRKEIERLKSVIA- 56
Query: 1246 RAAESEKLGAELEEI--IEALHARETAVPSSSRLHNLRKTVEKLRQQN 1291
++ L EE ++ + A + L+K E+L ++
Sbjct: 57 -DLWADILMERAEEFDSMKVVAEVVDADMQA-----LQKLAERLAEKG 98
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome,
viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB:
1wnc_A 2fxp_A
Length = 149
Score = 29.3 bits (65), Expect = 7.4
Identities = 20/113 (17%), Positives = 44/113 (38%), Gaps = 16/113 (14%)
Query: 1537 DNKKVLIDSFNKGIIGMTELES------EEVKDLIQVGVHGLQVELNAL----------L 1580
+N+K + + FNK I + E + +++D++ L + L L
Sbjct: 18 ENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVL 77
Query: 1581 QNIEAEINKVANAAQERKAMQDKISKLQSWLKQYIDYSGNKQALQSRLDKVNE 1633
+I + ++KV Q + + L + + +Q +D++NE
Sbjct: 78 NDILSRLDKVEAEVQIDRLITGGRGGSDVDLGDISGINASVVNIQKEIDRLNE 130
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic
translation initiation factor 2balpha (EIF2balpha); 2.65A
{Homo sapiens}
Length = 315
Score = 30.0 bits (68), Expect = 7.7
Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Query: 1243 NEKRAAESEKLGAELEEIIEALHARETAVPSSSRLHNLRKTVEKLRQQNEKRAAESEKLG 1302
+ + L A L IE L +++V SS + + + + + +
Sbjct: 35 KRDKGETIQGLRANLTSAIETLCGVDSSVAVSSGGELFLRFISLASLEYSDYSKCKKIMI 94
Query: 1303 AELEEII-EALHARE 1316
E + +R
Sbjct: 95 ERGELFLRRISLSRN 109
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel
inter domain, chaperone; 3.94A {Mycobacterium
tuberculosis} PDB: 3m9d_A
Length = 251
Score = 30.2 bits (67), Expect = 7.9
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 8/103 (7%)
Query: 1201 DKGDQLSSDGTISDRNEITEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEI 1260
+ ++ + G D + +L LR+ LR+Q E A
Sbjct: 2 GESERSEAFGIPRDSPLSSGD----AAELEQLRREAAVLREQLEN--AVGSHAPTRSARD 55
Query: 1261 IEALHARETAVPSSSRLHNLRKTVEKLRQQNEKRAAESEKLGA 1303
I L ++R L +T+++ RQQ E ++LG
Sbjct: 56 IHQL--EARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96
Score = 29.8 bits (66), Expect = 9.1
Identities = 11/76 (14%), Positives = 28/76 (36%)
Query: 1187 ADIQEYEAILATASDKGDQLSSDGTISDRNEITEQLQSRKQQLHNLRKTVEKLRQQNEKR 1246
D E E + A+ +QL + + + ++ +L KL + ++
Sbjct: 21 GDAAELEQLRREAAVLREQLENAVGSHAPTRSARDIHQLEARIDSLAARNSKLMETLKEA 80
Query: 1247 AAESEKLGAELEEIIE 1262
+ L E++ + +
Sbjct: 81 RQQLLALREEVDRLGQ 96
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 30.0 bits (67), Expect = 8.9
Identities = 40/284 (14%), Positives = 105/284 (36%), Gaps = 5/284 (1%)
Query: 1028 SMQKRYAQLSRTIEDRISTVNNKLQSVKRLQHKVEEAKALLQKAESQLARPVSTQAEDIS 1087
+++K+ L E+ + + K + + ++ + L + +L + + S
Sbjct: 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKA-TEDELDKYS 61
Query: 1088 EALTVYQKLLDEINSWKNSQSDEDLVHLADSIKPLDEVVERIENHAVPKLKSLLLLREQF 1147
EAL Q+ L+ K + ++ D+ L I+ +E ++R + L+ L +
Sbjct: 62 EALKDAQEKLELAEK-KATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120
Query: 1148 TTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKIIADIQEYEAILATASDKGDQL- 1206
+ + +++ ++E + +E L ++
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 180
Query: 1207 -SSDGTISDRNEITEQLQSRKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALH 1265
++ + E+ E++++ L +L EK Q+ +K E + L +L+E
Sbjct: 181 ERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE 240
Query: 1266 ARETAVPS-SSRLHNLRKTVEKLRQQNEKRAAESEKLGAELEEI 1308
E +V + +L + + + + + E + ++ I
Sbjct: 241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.127 0.349
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 31,296,306
Number of extensions: 1899909
Number of successful extensions: 5687
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5256
Number of HSP's successfully gapped: 576
Length of query: 2174
Length of database: 6,701,793
Length adjustment: 109
Effective length of query: 2065
Effective length of database: 3,658,404
Effective search space: 7554604260
Effective search space used: 7554604260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.8 bits)