RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4474
(2174 letters)
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 500
Score = 37.3 bits (86), Expect = 0.019
Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 11/110 (10%)
Query: 144 LQEVLSHKRIIESLLDKSKSLPQINKDQALEKAIVS--------VNKRYEDLVDGILKTI 195
L V I E ++ + L +++ + S VN +DL +G +
Sbjct: 46 LINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHLV 105
Query: 196 SQLEESLDIFQQFQQLQKAYQEDQKQLW---DKLSSLTERELKGKLSSWC 242
L L Q L +L D + L + L W
Sbjct: 106 LGLISQLIKIQLLADLNLKKTPQLVELLEDSDDVEELLRLPPEKVLLKWM 155
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 32.8 bits (74), Expect = 0.23
Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 5/134 (3%)
Query: 752 IQKEAQQLSEWDSSIVPKVSDLETRWAAVKSAWDAKHSDLSSEIAQYSSYQNAVQDAEKW 811
++ ++ E I + ++ TR+ + K + L Q +DA+
Sbjct: 10 VESSGPKVLETAEEIQERRQEVLTRYQSFKERVAERGQKLE----DSYHLQVFKRDADDL 65
Query: 812 LLQISFQLMAHNSLYINNRQQTLEQIQHHEKLLQDYSSYQNAVQDAEKWLLQISFQLMAH 871
I ++ + + Q H+ L + + + + EK + F +
Sbjct: 66 GKWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREER-FTMGHS 124
Query: 872 NSLYINNRQQTLEQ 885
+ L
Sbjct: 125 AHEETKAHIEELRH 138
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId:
9606]}
Length = 124
Score = 31.1 bits (70), Expect = 0.45
Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 4/95 (4%)
Query: 1748 YEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKI 1807
+ + +T W E+ L + +L E +A L+ + D +HQ + Q+
Sbjct: 19 FRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIA 78
Query: 1808 ESL----HQPSEQSKQQLATITTRHGNVLKRAQKK 1838
+ L + + + I + + QK+
Sbjct: 79 QELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKR 113
Score = 30.7 bits (69), Expect = 0.79
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 244 YEESVATLLDWLKVTEKKLGDEMELKTTLDEKKAQLQVYRTIYQDATSHQQDLLQLKDKI 303
+ + +T W E+ L + +L E +A L+ + D +HQ + Q+
Sbjct: 19 FRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIA 78
Query: 304 ESL----HQPSEQSKQQLATITTRHGNVLKRAQK 333
+ L + + + I + + QK
Sbjct: 79 QELNELDYHDAVNVNDRCQKICDQWDRLGTLTQK 112
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 505
Score = 32.3 bits (73), Expect = 0.74
Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 15/114 (13%)
Query: 144 LQEVLSHKRIIESLLDKSKSLPQINKDQALE------------KAIVSVNKRYEDLVDGI 191
L I E +L+K ++ ++ + +E I N D+++G
Sbjct: 49 LINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMGGISITNIGAGDILEGR 108
Query: 192 LKTISQLEESLDIFQQFQQLQKAYQEDQKQLW---DKLSSLTERELKGKLSSWC 242
I L + ++ + +L + L + L W
Sbjct: 109 EHLILGLVWQIIRRGLLGKIDITLHPELYRLLEEDETLDQFLRLPPEKILLRWF 162
>d2q7sa1 c.56.5.9 (A:10-289) N-formylglutamate amidohydrolase
{Ralstonia eutropha [TaxId: 106590]}
Length = 280
Score = 31.7 bits (71), Expect = 0.81
Identities = 6/46 (13%), Positives = 19/46 (41%)
Query: 1568 GVHGLQVELNALLQNIEAEINKVANAAQERKAMQDKISKLQSWLKQ 1613
+ LQ+E+ L E + A ++ + ++ ++++
Sbjct: 233 RRNSLQIEIRRPLYMEEGTRERNEGFATLQRDLTLLTLRIAEYVRR 278
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 128
Score = 30.3 bits (68), Expect = 1.1
Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 13/113 (11%)
Query: 1215 RNEITEQLQSRKQQLHNLRKTVEKLRQQNE-KRAAESEKLGA---ELEEIIEALHARETA 1270
+E E L +Q L +L Q N RAA S K GA + E H E
Sbjct: 10 FDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENL 69
Query: 1271 V---------PSSSRLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHA 1314
+ ++ ++ +T + +++Q + E A E I AL
Sbjct: 70 LDEARRGEMQLNTDIINLFLETKDIMQEQLDAYKNSEEPDAASFEYICNALRQ 122
>d1r4xa2 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-terminal
subdomain {Human (Homo sapiens) [TaxId: 9606]}
Length = 111
Score = 29.7 bits (67), Expect = 1.4
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 210 QLQKAYQEDQKQLWDKLSSLTERELKGKLSSWCGYEESVATLLDWL 255
+QK + + + WD++ E+E LS+ EE+V ++ +L
Sbjct: 1 HIQKVMKLNFEAAWDEVGDEFEKEETFTLSTIKTLEEAVGNIVKFL 46
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli
[TaxId: 562]}
Length = 94
Score = 29.1 bits (65), Expect = 1.7
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 1252 KLGAELEEIIEALHARETAVPSSSRLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEA 1311
+LG LE I E L R P + V++ Q+ E R AE + + L+ + +A
Sbjct: 14 QLGFSLESIRELLSIRID--PEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDA 71
Query: 1312 LHARETAVKTLPVL 1325
+ +L
Sbjct: 72 CCGTAHSSVYCSIL 85
>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein
1 (Tip47), C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 226
Score = 30.2 bits (68), Expect = 2.5
Identities = 17/71 (23%), Positives = 27/71 (38%)
Query: 482 TNLDDLEKYKALLQEVISHNSDMETLNDKCEALMELAAHSPIREETLRLQALYAALVTSV 541
+ EK + + +E A S R+ T +LQ++ AL S+
Sbjct: 88 RLGEGQEKLHQMWLSWNQKTPQDAEKDPAKPEQVEARALSMFRDITQQLQSMCVALGASI 147
Query: 542 QGLVSQVEKNL 552
QGL S V +
Sbjct: 148 QGLPSHVREQA 158
Score = 30.2 bits (68), Expect = 2.5
Identities = 17/71 (23%), Positives = 27/71 (38%)
Query: 1849 TNLDDLEKYKALLQEVISHNSDMETLNDKCEALMELAAHSPIREETLRLQALYAALVTSV 1908
+ EK + + +E A S R+ T +LQ++ AL S+
Sbjct: 88 RLGEGQEKLHQMWLSWNQKTPQDAEKDPAKPEQVEARALSMFRDITQQLQSMCVALGASI 147
Query: 1909 QGLVSQVEKNL 1919
QGL S V +
Sbjct: 148 QGLPSHVREQA 158
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 30.3 bits (67), Expect = 2.9
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 13/74 (17%)
Query: 1001 MISNVSIATEHMNLNDADRLTVNDSVSSMQKRYAQLSRTIEDRISTVNNKLQSVKRLQHK 1060
M N+S A + ++++ +S+ YA R+I + + N + V RL+
Sbjct: 295 MFVNISPAESN----------LDETHNSL--TYASRVRSIVNDP-SKNVSSKEVARLKKL 341
Query: 1061 VEEAKALLQKAESQ 1074
V K +
Sbjct: 342 VSYWKEQAGRKGDD 355
>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia
coli [TaxId: 562]}
Length = 880
Score = 30.5 bits (68), Expect = 3.1
Identities = 16/103 (15%), Positives = 38/103 (36%), Gaps = 6/103 (5%)
Query: 1225 RKQQLHNLRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVPSSS-----RLHN 1279
+ ++ + VE +R+ ++ A ++ EL ++ L E + + L N
Sbjct: 21 KDALGEHILERVETIRKLSKSSRAGNDANRQELLTTLQNLSNDELLPVARAFSQFLNLAN 80
Query: 1280 LRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVKTL 1322
+ + + E A+ E + L ++ E +K
Sbjct: 81 TAEQYHSISPKGE-AASNPEVIARTLRKLKNQPELSEDTIKKA 122
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 110
Score = 28.0 bits (62), Expect = 5.4
Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
Query: 949 KEFEVDVENVEAKLKELEVAVEGDVKTNNVLMLQELLNKYAQLNEEAGELNMMISNV-SI 1007
+ F +++ + L E+E + + ++ + LL K+ L + + ++ S
Sbjct: 5 QNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQ 64
Query: 1008 ATEHMNLNDADRLTVNDSVSSMQKRYAQLSRTIEDR 1043
A M + D V D ++ R+ ++ R
Sbjct: 65 ADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAAR 100
Score = 27.7 bits (61), Expect = 5.8
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 699 KWQQY---VNDELEWENHSQNTLQWLDNIRS--DMKTLLERSKHIVDDIEKKKDDLKPIQ 753
K Q + + D W + + L D + + LL++ + + DI +D LK +
Sbjct: 3 KQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLN 62
Query: 754 KEAQQLSE----WDSSIVPKVSDLETRWAAVKSAWDAKHSDL 791
+A L S + K + R+ +KS A+ + L
Sbjct: 63 SQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKL 104
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 29.1 bits (64), Expect = 6.0
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 13/57 (22%)
Query: 1232 LRKTVEKLRQQNEKRAAESEKLGAELEEIIEALHARETAVPSSSRLHNLRKTVEKLR 1288
LR+ E+L + NE++A AELE E L LHN TV LR
Sbjct: 1 LRQRTEELLRCNEQQA-------AELETCKEQLFQSNM---ERKELHN---TVMDLR 44
Score = 28.7 bits (63), Expect = 8.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 1280 LRKTVEKLRQQNEKRAAESEKLGAELEE 1307
LR+ E+L + NE++AAE E +L +
Sbjct: 1 LRQRTEELLRCNEQQAAELETCKEQLFQ 28
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 106
Score = 27.8 bits (61), Expect = 6.3
Identities = 20/102 (19%), Positives = 37/102 (36%)
Query: 555 QTEFLAKKEEVEAWLHKAHATVQECAGNGSKNVLKERLDTVNMVAERIPEGQHLMSVLQD 614
+ FL ++ +AWL V S ++ L + + I Q +++
Sbjct: 1 EQAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKE 60
Query: 615 TFTKALDTTPSDQQDSLREAMTVLRDSWDRLNRDLKSTSTQL 656
+ K + + L + + L WD L R +S S L
Sbjct: 61 SGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTL 102
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Length = 334
Score = 28.9 bits (64), Expect = 6.7
Identities = 46/327 (14%), Positives = 108/327 (33%), Gaps = 21/327 (6%)
Query: 1328 EVTSVDVELDKQRLELATKEVQPYVQRYETLKKNIAEAIDKFETQANEHEAYKQAYNEAY 1387
E V ++ K++L + + Y++ ++ + + + ++K E NE + + Y
Sbjct: 10 EENRVKSDMLKEKLSKDAENHKAYLKSHQVHRHKL-KEMEKEEPLLNEDKERTVLFPIKY 68
Query: 1388 DWLRKAKLGAQANADCHGEQQTTKDKADKIKQITKSLPEGQKLIDKTVALKNNVLESTGP 1447
+ +A A+A+ E +KD D ++ + I + +A
Sbjct: 69 HEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMN---ENERFFISRVLAFFAASDGIVNE 125
Query: 1448 IGKENINQEINQITLDWTNLQNTLQDIDKHHAKCLSLWNDFLSS----KNTLEKWIEGFQ 1503
EN + E+ + + I+ H++ SL D L I
Sbjct: 126 NLVENFSTEVQ--IPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIP 183
Query: 1504 KKIESEKDIGDCTNLDDLEKYKALLQ----EGLHKEADNKKVLIDSFNKGIIGMTELESE 1559
+ E + D + L+ EG+ + + G+T
Sbjct: 184 EIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNEL 243
Query: 1560 EVKDLIQVGVHGLQVELNALLQNIEAEINKVANAAQE------RKAMQDKISKLQS-WLK 1612
+D + + + A + K+ A E A+ + + + +
Sbjct: 244 ICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMN 303
Query: 1613 QYIDYSGNKQALQSRLDKVNEIQESFP 1639
QY+++ ++ + K +++ F
Sbjct: 304 QYVEFVADRLLVAFGNKKYYKVENPFD 330
>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 335
Score = 28.5 bits (63), Expect = 8.9
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 740 DDIEKKKDDL-----KPIQKEAQQLSEWDSSIVPKVSDLETRWAAVKSAWDAKHSDLSSE 794
DD+++ K K + + +I+ + +W + S + K +L +E
Sbjct: 268 DDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWNKLFSEYQKKFPELGAE 327
Query: 795 IAQ 797
+A+
Sbjct: 328 LAR 330
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.127 0.349
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 7,469,314
Number of extensions: 351405
Number of successful extensions: 1342
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1317
Number of HSP's successfully gapped: 159
Length of query: 2174
Length of database: 2,407,596
Length adjustment: 100
Effective length of query: 2074
Effective length of database: 1,034,596
Effective search space: 2145752104
Effective search space used: 2145752104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.0 bits)