Query psy4475
Match_columns 849
No_of_seqs 286 out of 768
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 18:04:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0517|consensus 100.0 6.8E-52 1.5E-56 480.0 80.5 774 8-846 1022-1986(2473)
2 KOG0517|consensus 100.0 7.3E-39 1.6E-43 372.3 84.8 810 10-838 597-1660(2473)
3 KOG0040|consensus 100.0 1.3E-27 2.9E-32 273.6 72.8 703 8-833 1136-1870(2399)
4 KOG0040|consensus 100.0 1.4E-26 2.9E-31 265.5 69.7 698 10-825 222-950 (2399)
5 cd00176 SPEC Spectrin repeats, 99.5 6.4E-12 1.4E-16 128.4 26.6 203 558-766 2-212 (213)
6 cd00176 SPEC Spectrin repeats, 99.4 1.1E-10 2.3E-15 119.4 25.6 199 459-662 3-212 (213)
7 KOG4286|consensus 99.4 8.9E-10 1.9E-14 122.1 31.7 296 458-769 3-337 (966)
8 PF00435 Spectrin: Spectrin re 98.8 6.2E-08 1.3E-12 86.7 13.2 98 666-765 3-105 (105)
9 smart00150 SPEC Spectrin repea 98.7 1.2E-07 2.5E-12 84.3 11.4 95 668-764 2-101 (101)
10 PF00435 Spectrin: Spectrin re 98.5 1.5E-06 3.2E-11 77.6 13.0 103 41-148 2-104 (105)
11 KOG4286|consensus 98.4 3E-05 6.5E-10 87.1 22.4 190 644-833 76-297 (966)
12 smart00150 SPEC Spectrin repea 98.3 3.9E-06 8.5E-11 74.3 10.8 99 44-147 2-100 (101)
13 KOG0994|consensus 97.8 0.16 3.4E-06 60.8 50.2 126 455-581 1460-1602(1758)
14 KOG0994|consensus 97.4 0.63 1.4E-05 56.0 47.9 54 734-787 1655-1708(1758)
15 PF06160 EzrA: Septation ring 93.1 23 0.00049 41.8 48.6 51 332-394 23-73 (560)
16 PRK04778 septation ring format 88.1 63 0.0014 38.3 47.0 33 512-544 154-188 (569)
17 KOG0161|consensus 86.2 1.4E+02 0.003 40.2 81.9 52 737-788 1657-1708(1930)
18 COG4477 EzrA Negative regulato 80.5 1.1E+02 0.0024 34.9 39.8 75 529-607 140-214 (570)
19 KOG4302|consensus 75.5 1.8E+02 0.004 34.6 32.2 132 8-164 10-143 (660)
20 PF12128 DUF3584: Protein of u 73.7 2.9E+02 0.0063 36.1 66.7 85 522-612 708-793 (1201)
21 PF00261 Tropomyosin: Tropomyo 67.1 1.6E+02 0.0035 30.4 25.9 58 699-756 141-199 (237)
22 PF06160 EzrA: Septation ring 64.9 2.9E+02 0.0063 32.6 46.6 27 14-40 58-85 (560)
23 PF00261 Tropomyosin: Tropomyo 63.8 1.8E+02 0.004 30.0 27.3 30 550-579 23-52 (237)
24 PRK02224 chromosome segregatio 60.3 4.4E+02 0.0095 33.1 64.6 35 731-765 644-678 (880)
25 COG1579 Zn-ribbon protein, pos 58.5 2.3E+02 0.0049 29.3 19.8 87 522-612 25-111 (239)
26 COG0497 RecN ATPase involved i 53.9 4.2E+02 0.0092 31.0 24.2 90 687-777 197-292 (557)
27 TIGR00606 rad50 rad50. This fa 53.3 6.8E+02 0.015 33.2 81.1 46 119-166 423-468 (1311)
28 PF14643 DUF4455: Domain of un 50.7 4.5E+02 0.0097 30.3 46.3 47 522-570 243-289 (473)
29 PF00038 Filament: Intermediat 48.5 3.7E+02 0.0081 28.8 27.7 18 523-540 77-94 (312)
30 PRK04778 septation ring format 47.6 5.5E+02 0.012 30.5 50.8 71 735-805 471-544 (569)
31 KOG0976|consensus 47.4 5.9E+02 0.013 30.8 48.4 42 521-562 365-406 (1265)
32 PF08580 KAR9: Yeast cortical 46.0 6.3E+02 0.014 30.7 34.7 84 599-689 208-294 (683)
33 PF04012 PspA_IM30: PspA/IM30 43.2 3.7E+02 0.008 27.2 19.3 36 798-833 165-200 (221)
34 PF04108 APG17: Autophagy prot 41.9 5.6E+02 0.012 28.9 32.3 45 738-782 309-353 (412)
35 PF12128 DUF3584: Protein of u 41.0 9.6E+02 0.021 31.4 74.8 124 26-156 198-327 (1201)
36 PF10046 BLOC1_2: Biogenesis o 39.4 2.3E+02 0.005 24.8 8.6 56 522-581 43-98 (99)
37 PF04156 IncA: IncA protein; 39.2 3.9E+02 0.0084 26.3 13.1 21 667-687 91-111 (191)
38 TIGR00606 rad50 rad50. This fa 38.5 1.1E+03 0.024 31.3 83.2 24 43-66 308-331 (1311)
39 PF10498 IFT57: Intra-flagella 33.3 3.7E+02 0.0081 29.7 10.9 128 472-606 222-351 (359)
40 KOG4240|consensus 33.0 1.1E+03 0.024 29.8 26.8 255 520-790 240-516 (1025)
41 KOG3958|consensus 32.4 6.3E+02 0.014 26.7 17.1 82 708-791 245-330 (371)
42 PF03962 Mnd1: Mnd1 family; I 30.6 5.5E+02 0.012 25.5 13.6 86 703-788 73-169 (188)
43 PF11932 DUF3450: Protein of u 30.2 6.4E+02 0.014 26.2 18.4 28 529-556 25-52 (251)
44 COG5185 HEC1 Protein involved 28.7 9E+02 0.02 27.4 19.4 114 667-787 305-429 (622)
45 PF06008 Laminin_I: Laminin Do 27.8 7.2E+02 0.016 26.0 24.8 68 660-728 181-252 (264)
46 PF14712 Snapin_Pallidin: Snap 26.5 4E+02 0.0087 22.6 9.0 82 291-393 9-90 (92)
47 PF08317 Spc7: Spc7 kinetochor 25.7 8.8E+02 0.019 26.3 23.2 221 329-604 70-290 (325)
48 PF12718 Tropomyosin_1: Tropom 25.6 5.7E+02 0.012 24.1 15.1 82 697-781 40-121 (143)
49 PF07304 SRA1: Steroid recepto 24.4 3.1E+02 0.0066 26.4 7.4 76 504-580 48-136 (157)
50 PF06008 Laminin_I: Laminin Do 22.7 8.9E+02 0.019 25.3 25.7 22 768-789 185-206 (264)
51 PRK09039 hypothetical protein; 21.9 1.1E+03 0.023 25.9 19.8 37 635-674 168-204 (343)
52 PF11616 EZH2_WD-Binding: WD r 20.8 1.2E+02 0.0025 20.1 2.4 21 521-541 6-26 (30)
No 1
>KOG0517|consensus
Probab=100.00 E-value=6.8e-52 Score=480.01 Aligned_cols=774 Identities=16% Similarity=0.203 Sum_probs=625.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHhhccccccccCCCHHHHHHhhhhh
Q psy4475 8 SQAATQAKQILDQFDTLLGKVKSLLADREDQYK---DHRVYKEACDELLTWLTRARDKIPSMKQKSLSDKLAIENIVAPL 84 (849)
Q Consensus 8 ~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~lq---~~q~f~~~~~~l~~Wl~~~~~~l~~~~~~~~~~~~~~e~~l~~~ 84 (849)
..++..|..-...++.+|+.|+.++++|..++. ..|.|..++++|..||+.++..+++-. .|.+-+..+.-|.+.
T Consensus 1022 Paea~~i~~r~~el~~~w~~l~~~~~~~~~~l~ea~~lQ~Fl~dld~f~~Wl~~tq~~~~see--~p~~l~eAe~LL~qH 1099 (2473)
T KOG0517|consen 1022 PAEAQAINARIAELQALWEQLQQRLQEREERLEEAGGLQRFLRDLDDFQAWLESTQTQVASEE--GPVDLAEAEQLLKQH 1099 (2473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCcHHHHHHHHHHH
Confidence 367888899999999999999999999999995 449999999999999999999999975 366666667778899
Q ss_pred HHHHHhhhhhHHHHHHHhhhhHHHhhcCCccChHHHHHHHHHhhhhhhHHHHHH----------------HHHHHHhHHH
Q psy4475 85 ESLLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAVKNEMKALNMKMHWIDLLN----------------KLEHEKNRLG 148 (849)
Q Consensus 85 q~l~~~~~~~~~~~~~l~~~ge~~~~~~s~~~~~~i~~~l~~l~~~~~w~~l~~----------------~l~~~~~~le 148 (849)
.+|..++..++.-|..+.+.|+.+..+...+.--+|++.|+.| .+.|.+|+. .|.+...+.+
T Consensus 1100 ~~l~eEI~~~~e~y~~~~~~ge~~~~g~~~p~~~~l~erL~~L--~~gw~eL~~mWe~Rq~~L~Q~l~lQ~F~Rda~q~e 1177 (2473)
T KOG0517|consen 1100 AALREEIDGYQEDYQRMRALGETVADGQTDPQYLFLRERLQAL--GTGWEELHRMWENRQKWLSQGLDLQLFLRDARQAE 1177 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHhHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875555556899999999 999999988 4677777999
Q ss_pred HHHHHhhhhhhhccCCCCccc-------------------------------------cCCCCCCchHHHHHHHHhHHHH
Q psy4475 149 AAIQAGEAATACISRPSSPLE-------------------------------------SAHPPVPDREIAIRLRLEDQIE 191 (849)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~l~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 191 (849)
.++.+.+++++..+-|.+.-. ..+..+.++-..|..+...+.+
T Consensus 1178 a~l~~qE~~L~~d~lp~sle~ae~~LKrh~DF~~tm~a~~~ki~a~~~~gd~Lv~~~h~~s~~I~ek~~~I~~r~~~nr~ 1257 (2473)
T KOG0517|consen 1178 ATLSNQEAFLSHDNLPDSLEEAEALLKRHRDFLTTMDANDEKIEALVDTGDKLVSEGHIDSDKIREKAQSILARRKANRE 1257 (2473)
T ss_pred HHHhhHHHHHhcccccccHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998877666441 1345555566667777777888
Q ss_pred HHHHHHHhHhhhhhCchHHHHHHHHHHHHHHhhhHHhhhhhcccc-----c-cCchhHHHHHHHHHhhHHHHHHhhhhhh
Q psy4475 192 QVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPC-----K-IKAESAQAEIAKMQDLKGVVLQKQTEGL 265 (849)
Q Consensus 192 ~~q~~~~~l~~~~~~le~~~~~~~el~~w~~e~~~~~~d~~~~~~-----~-~~~~~~~~el~~~~~~~~~l~~~~~~~~ 265 (849)
..+.+...|.+++ ++..|+++|+||..||++++.++.|.+++.+ + ++|++|+++|.+++.++.+|++.|..++
T Consensus 1258 rA~q~~~~L~~sl-elQ~flqd~~EL~~Wi~EK~l~a~Desy~~~~nl~~k~~kHqAFeaELaank~~l~~i~~eG~~L~ 1336 (2473)
T KOG0517|consen 1258 RAQQRLRKLKDSL-ELQEFLQDCDELKLWIEEKMLMAQDESYRDARNLHSKWLKHQAFEAELAANKEWLEKIEKEGQELV 1336 (2473)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 9999999999999 8999999999999999999999998877765 2 6789999999999999999999999988
Q ss_pred hhHHHHHHHHHHHHHhhccchhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHH
Q psy4475 266 LEDQLAELITLINQAIGKKDSQQKVIESYKADVNELDKQLDAISLIEGTINQAIGKKDSQ---QKVIESYKADVNDLDKQ 342 (849)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~l~~~L~~~~~~k~~~---~~~~~~~~~~~~~~~~~ 342 (849)
.+.|. +.|. |..+|.+|++.|++|.+.+..|+.. ...-+.|.+.+.|+.+|
T Consensus 1337 ~ekpe-----------------------~~~~---V~~kl~~L~~~W~~Le~~t~~Kg~~L~qA~~q~~~~qs~~D~~~~ 1390 (2473)
T KOG0517|consen 1337 SEKPE-----------------------LKAL---VEKKLRELHKQWDELEKTTQEKGRKLFQANRQELLLQSLADAKKK 1390 (2473)
T ss_pred hcCCc-----------------------cchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 88653 4444 8999999999999999988777753 22447889999999999
Q ss_pred HHHHHHhhhhccccCCCchHH-HHHHHHHHHHHHHhcCCchhHHhhHhHHHHHHHhchhhHHHhHHHHHHHHHHhhhccc
Q psy4475 343 LDAISKKLDSVEHGQGVLCPV-KANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLDEINLWKNSQ 421 (849)
Q Consensus 343 l~~~~~~l~~~~~~~~~~~~~-~l~kl~~l~~e~~~~~~~~l~~l~~~~~~l~~~~~~~d~~~~~~q~llee~~~~~~~~ 421 (849)
++.++..|.+.+.|.++.+.+ .++|+.-+..+|.. ....+.++...|+.+...++ +++.|.+..
T Consensus 1391 l~~le~qL~S~D~G~DL~Svn~llkKqq~lEsem~~-~~~kv~el~s~~~~ma~~~~--~a~~I~~~~------------ 1455 (2473)
T KOG0517|consen 1391 LDELESQLQSDDTGKDLTSVNDLLKKQQVLESEMEV-RAQKVAELQSQAKAMAEEGH--SAENIEETT------------ 1455 (2473)
T ss_pred HHHHHHHhcCCCCCcCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHhhhccCc--chhhHHHHH------------
Confidence 999999999999999987775 78999999999998 88899999999999987766 344443221
Q ss_pred chHHHHHhHhhhccHHHHHHHHhhchhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhc--cccCCcccHHHHHHHHH
Q psy4475 422 SDEDLAHLADSIKPLDEVVERIENNAVPKLKSLL--LLREQFTTLIMQIVGFITETTARVG--EVDGNSATVQEKIDKYD 497 (849)
Q Consensus 422 ~~~~~~~l~~~l~~~~~i~e~~~~~~~~~l~~~l--~~~~qf~~~~~el~~wl~e~~~~~~--~~~~~~~~ve~~~~k~~ 497 (849)
.....+|.+...|+.+ +.+.+. ....||..++++-..||.+..++.. +.+.+.++++..+||++
T Consensus 1456 -~~v~~Rf~~L~~Pl~~-----------R~~~Le~S~e~hQf~~dvddE~~WV~ErlP~A~s~d~G~~L~~~q~l~KK~q 1523 (2473)
T KOG0517|consen 1456 -LAVLERFEDLLGPLQE-----------RRKQLEASKELHQFVRDVDDELLWVAERLPLASSTDYGENLQTVQSLHKKNQ 1523 (2473)
T ss_pred -HHHHHHHHHHHhHHHH-----------HHHHHHHHHHHHHHHHhhhHHHHHHHhhCccCCchhhccChHHHHHHHHHhH
Confidence 1233455555555443 111222 1346999999999999999999985 44566778888888887
Q ss_pred HH------hHHHHHHHHHHHHHhcccCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 498 KE------NQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERT 571 (849)
Q Consensus 498 ~~------~q~el~~v~~~g~~L~~~~~~~~~~~I~~~l~~L~~~W~~L~~~~~~R~~~Le~a~~~~~~f~~~l~~l~~W 571 (849)
.. .+..|+.|...|+.|+..+ +++++.|..++++|...|..|...+..|.+.|+.++...++|. ++.++++|
T Consensus 1524 ~Lq~EI~~H~prI~~vl~~gq~Li~~~-h~~a~~i~~~~~eLe~aW~eL~~a~e~R~~~L~~a~kaQQY~f-DaaE~EaW 1601 (2473)
T KOG0517|consen 1524 TLQAEIKGHQPRINDVLERGQSLIDSG-HPEAEAIEEKLQELESAWQELKEACELRRQRLDEAVKAQQYYF-DAAEAEAW 1601 (2473)
T ss_pred HHHHHHHhcchHHHHHHHHhHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHH
Confidence 54 3446999999999999875 4899999999999999999999999999999999997655555 56999999
Q ss_pred HHHHHHHhhhcccccccHHHHHHHHHHH-------HHHHhhHHhhh-----------hhHHHHHhhhhHHHHHHhhc---
Q psy4475 572 LKGVETSVEQCDGVVHSLAVLTQNKSEL-------ESLLGTVESEK-----------PKVSQISTLAAPIVKFLKKD--- 630 (849)
Q Consensus 572 L~~~e~~l~~~~~v~~~~~ql~~~~~~l-------~~~~~~v~~l~-----------~~~~~i~~~~~~l~~~~~~~--- 630 (849)
|++.+..+++.++ |+|...-..+.+++ ..+...|..|. +..+.|....+.+.+.|...
T Consensus 1602 m~Eqel~m~see~-gkDE~sa~~llkKH~~Le~~v~~Y~~~i~qL~~~~~~lv~~~hP~~eri~~rQ~qldkly~~Lk~L 1680 (2473)
T KOG0517|consen 1602 MGEQELYMMSEEY-GKDEDSALKLLKKHQALEQEVEDYAQTIEQLAQKAQALVEANHPESERISRRQSQLDKLYAGLKDL 1680 (2473)
T ss_pred HhhhHHHHhhhhc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888 65543333333333 33333333331 22333333333333444331
Q ss_pred --------------------------------------------------------------------------------
Q psy4475 631 -------------------------------------------------------------------------------- 630 (849)
Q Consensus 631 -------------------------------------------------------------------------------- 630 (849)
T Consensus 1681 A~eRr~~Lee~l~L~el~RE~dDLeqWIae~e~vAgS~elGqD~EHv~~Lq~KF~eFa~~te~iG~eRv~~~n~la~~LI 1760 (2473)
T KOG0517|consen 1681 AEERRRRLEETLRLYELSREVDDLEQWIAEKEVVAGSEELGQDFEHVTLLQEKFREFARDTEAIGSERVAACNLLADELI 1760 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCChHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence
Q ss_pred ---chhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC---chHHHHH
Q psy4475 631 ---GLDLQKRITALELLSEEL---NSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQD-RTLP---PQTLIQF 700 (849)
Q Consensus 631 ---~~d~~~i~~~l~~l~~~w---~~~~~~R~~~Le~a~~~~~~f~~d~~~l~~WL~e~E~~l~~-~~~~---~~~l~~~ 700 (849)
|++...+.+.-++|+..| +..+..|.+.|..+..++ .||.|+.++..||.++...+.+ .+.+ ...+.++
T Consensus 1761 ~~ghs~a~tvaewkd~LneaW~~LlELi~tR~q~Laas~elh-rf~~D~~E~l~riqeK~~~lp~~lgRD~~s~~al~R~ 1839 (2473)
T KOG0517|consen 1761 ERGHSAAATVAEWKDGLNEAWADLLELIDTRGQKLAASRELH-RFHRDAREVLGRIQEKQAALPDDLGRDLNSAEALQRK 1839 (2473)
T ss_pred hcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhhCchhhCCCcchHHHHHHH
Confidence 567777777789999999 889999999999999886 8999999999999999988853 2222 1235578
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 701 IQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEV 780 (849)
Q Consensus 701 lq~Lq~Ei~~~~~~~~~l~~~g~~L~~~~~~~~e~~~i~~~l~~L~~rW~~L~~~~~~r~~~Le~~l~~~~~f~~~~~el 780 (849)
|+.|..||.+..+.+..|.+.+.+|...|+ .+-+..|+.+.+.+.+.|..|...|..|+..|..+.+ ..+|+..+.++
T Consensus 1840 H~~fe~dl~~l~~Qvqql~e~a~rLq~~Ya-G~kA~aI~~reqeV~qaW~~L~~~~~~Rr~~L~~t~D-l~rF~~~VRDl 1917 (2473)
T KOG0517|consen 1840 HEAFEHDLVALEPQVQQLQEDAARLQKAYA-GDKAEAIQQREQEVLQAWAELQGACEARRDRLADTSD-LFRFFSMVRDL 1917 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 899999999999999999999999999994 4568899999999999999999999999999999998 66999999999
Q ss_pred HHHHHHHHhhh---cCCCCCCchHHHHHHHHHHHHHHHHhhHhhHhhhhhhHHHHh-hcccCCCCCchhh
Q psy4475 781 MKWVSEKRTFL---SEPYDSNNLSDLRVKLNSYTELTSFVNKHTRKVKDLSKNTQE-AYVSSQGVVPADL 846 (849)
Q Consensus 781 ~~Wl~~~e~~~---~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~-~~~~~~~~~~~~~ 846 (849)
..|+.....-+ ..|-.+++.+-+...|+-+...+++..+...+..++|+.|.. +|+.+ .+|.+||
T Consensus 1918 lsWmd~v~~qiqa~e~prDvss~ellm~~Hq~lkaEieARe~~f~~c~eLG~~lL~~~hyas-~EI~ekl 1986 (2473)
T KOG0517|consen 1918 LSWMDEVIRQIQAQERPRDVSSVELLMNNHQGLKAEIEAREDNFSACIELGKSLLLRKHYAS-EEIKEKL 1986 (2473)
T ss_pred HHHHHHHHHHhhhhcCCCcchhHHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHHhcccch-HHHHHHH
Confidence 99999998544 345566666777889999999999999999999999999999 55443 4444444
No 2
>KOG0517|consensus
Probab=100.00 E-value=7.3e-39 Score=372.33 Aligned_cols=810 Identities=15% Similarity=0.205 Sum_probs=593.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHhhccccccccCCCHHHHHHhhhhhHH
Q psy4475 10 AATQAKQILDQFDTLLGKVKSLLADREDQYKDH---RVYKEACDELLTWLTRARDKIPSMKQKSLSDKLAIENIVAPLES 86 (849)
Q Consensus 10 ~~~~~~~~l~~~~~~~~~~~~~~~~r~~~lq~~---q~f~~~~~~l~~Wl~~~~~~l~~~~~~~~~~~~~~e~~l~~~q~ 86 (849)
...-++.-+..+...+..|-..++.|..+|-+. -+|.+++++-.+||.+++..+.+.. +..|-..+...+.+.+.
T Consensus 597 dp~vi~~R~~~le~~y~eL~~laa~RRarLE~sr~l~~F~~d~~EeEaWlkEkeqi~~sa~--~g~DLs~v~~ll~kHKa 674 (2473)
T KOG0517|consen 597 DPQVIQERVAHLEQCYQELVELAAARRARLEESRRLWQFLWDVEEEEAWLKEKEQILSSAD--TGRDLSSVLRLLQKHKA 674 (2473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--ccccHHHHHHHHHHHHH
Confidence 455678888889999999999999999999665 4899999999999999999998874 46677778888999999
Q ss_pred HHHhhhhhHHHHHHHhhhhHHHhhcCCccChHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHhhhhhhhccCCCC
Q psy4475 87 LLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAVKNEMKALNMKMHWIDLLNKLEHEKNRLGAAIQAGEAATACISRPSS 166 (849)
Q Consensus 87 l~~~~~~~~~~~~~l~~~ge~~~~~~s~~~~~~i~~~l~~l~~~~~w~~l~~~l~~~~~~le~~~~~~~~~~~~~~~~~~ 166 (849)
|+.++..|.+.+..+...|+.++... .+|.+-|+..+..+ ...|+.|......|+.||+.+....- |.++.+...+
T Consensus 675 lE~E~~~~~a~~~~~~~~G~~Lvae~-~pg~~~i~~R~~~i--~~~W~~L~~l~~~r~~rL~~A~~~~Q-ffaDAdd~~s 750 (2473)
T KOG0517|consen 675 LEDEMRGRDAHLKQMIREGEELVAEG-HPGSDQIQERAAEI--REQWQRLEALVAGRGRRLQEARELYQ-FFADADDAES 750 (2473)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHhcC-CCCCCcHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHH
Confidence 99999999999999999999999774 55778899999999 88999999999999999998876543 4455555555
Q ss_pred ccc-----------------------------------------------------cCCCCCCc---hHHHHHHHHhHHH
Q psy4475 167 PLE-----------------------------------------------------SAHPPVPD---REIAIRLRLEDQI 190 (849)
Q Consensus 167 ~l~-----------------------------------------------------~~~~~~~~---~~~~~~~~~~~~~ 190 (849)
||- ...|.+.. +-..+.....++.
T Consensus 751 Wl~d~~rlvss~d~G~DE~saq~LlkrH~~l~~El~a~~~~i~~L~eQa~~l~~~~~e~p~V~~~~~R~~~i~q~Y~El~ 830 (2473)
T KOG0517|consen 751 WLRDALRLVSSEDVGHDEASAQALLKRHRDLEEELRAYRGDIDRLEEQASALPQESPEGPEVRQPLQRQDTISQDYEELQ 830 (2473)
T ss_pred HHHHHHHhccchhcCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccCCCcccccHHHHHHHHHHHHHHHH
Confidence 551 11222222 2222333333333
Q ss_pred HHHHHHHHhHhhhhhCchHHHHHHHHHHHHHHhhhHHhhhhhccccccCchhHH-------H------------------
Q psy4475 191 EQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCKIKAESAQ-------A------------------ 245 (849)
Q Consensus 191 ~~~q~~~~~l~~~~~~le~~~~~~~el~~w~~e~~~~~~d~~~~~~~~~~~~~~-------~------------------ 245 (849)
+-.+-.-..|.+++ .|=.|...|.+...||.++...++++...|..-+.+.++ .
T Consensus 831 ~lA~lRrq~L~dal-aLy~~~se~d~~ElWi~Eke~~L~~m~~~~~~E~vev~q~rFe~l~~eM~~~~~~v~~Vn~~a~q 909 (2473)
T KOG0517|consen 831 ELAQLRRQRLEDAL-ALYGFYSECDACELWIKEKEKWLATMSPPDSLEDVEVMQHRFEKLEQEMNTLAGRVAEVNDIARQ 909 (2473)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhhccHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 33333333444444 345567888888999999999999664333211111111 1
Q ss_pred -------HHHHHHhhHHHHHHhhhhhhhhHHHHHH------------------------HHHH-----------------
Q psy4475 246 -------EIAKMQDLKGVVLQKQTEGLLEDQLAEL------------------------ITLI----------------- 277 (849)
Q Consensus 246 -------el~~~~~~~~~l~~~~~~~~~~~~~~~~------------------------~~~~----------------- 277 (849)
....+.....+|+.+|.++......-.. ...+
T Consensus 910 L~~~ghp~sd~I~~~Q~~Ln~rW~~l~~l~~qk~~~L~~a~~V~~f~~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~al 989 (2473)
T KOG0517|consen 910 LLEVGHPNSDEILARQDKLNQRWQQLRELVDQKKVALESALRVETFHLECEETRVWIRDKTRVLESTDRLGNDLAGVMAL 989 (2473)
T ss_pred HHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccCcchHHHHHH
Confidence 1222333333444444433322110000 0011
Q ss_pred HHHhhccc---------------hhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHH
Q psy4475 278 NQAIGKKD---------------SQQKVIESYKADVNELDKQLDAISLIEGTINQAIGKKDSQ---QKVIESYKADVNDL 339 (849)
Q Consensus 278 ~~~~~~~~---------------~~~~~~~~~~~~~~~l~~~l~~l~~l~~~L~~~~~~k~~~---~~~~~~~~~~~~~~ 339 (849)
+..+.+.. -+..|...++.....|+.++..|..+|+.|.......... ...++.|.+.+.+|
T Consensus 990 qrrL~~lErdl~aie~kv~~L~~ea~~v~~~~Paea~~i~~r~~el~~~w~~l~~~~~~~~~~l~ea~~lQ~Fl~dld~f 1069 (2473)
T KOG0517|consen 990 QRRLQGLERDLAAIEAKVAALEKEANKVEEEHPAEAQAINARIAELQALWEQLQQRLQEREERLEEAGGLQRFLRDLDDF 1069 (2473)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 2345556677778899999999999999998877655553 33789999999999
Q ss_pred HHHHHHHHHhhhhccccCCCchHH-HHHHHHHHHHHHHhcCCchhHHhhHhHHHHHHHhchhhHHHhHHHH--HHH---H
Q psy4475 340 DKQLDAISKKLDSVEHGQGVLCPV-KANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQK--LLD---E 413 (849)
Q Consensus 340 ~~~l~~~~~~l~~~~~~~~~~~~~-~l~kl~~l~~e~~~~~~~~l~~l~~~~~~l~~~~~~~d~~~~~~q~--lle---e 413 (849)
..|+..+.+.+.+.+.+.+++... .++++..|..++.. .......+...|+.+....+++.+-.+.+.. +-. +
T Consensus 1070 ~~Wl~~tq~~~~see~p~~l~eAe~LL~qH~~l~eEI~~-~~e~y~~~~~~ge~~~~g~~~p~~~~l~erL~~L~~gw~e 1148 (2473)
T KOG0517|consen 1070 QAWLESTQTQVASEEGPVDLAEAEQLLKQHAALREEIDG-YQEDYQRMRALGETVADGQTDPQYLFLRERLQALGTGWEE 1148 (2473)
T ss_pred HHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhccCCCchHhHHHHHHHHHHhHHHH
Confidence 999999999999988766666654 68999999999998 8889999999999777644444443444332 111 1
Q ss_pred HH-hhhccc-----------ch------------------------------HHHHHhHhhhccHH--------------
Q psy4475 414 IN-LWKNSQ-----------SD------------------------------EDLAHLADSIKPLD-------------- 437 (849)
Q Consensus 414 ~~-~~~~~~-----------~~------------------------------~~~~~l~~~l~~~~-------------- 437 (849)
+. .|.+.. |+ ....+..|++...+
T Consensus 1149 L~~mWe~Rq~~L~Q~l~lQ~F~Rda~q~ea~l~~qE~~L~~d~lp~sle~ae~~LKrh~DF~~tm~a~~~ki~a~~~~gd 1228 (2473)
T KOG0517|consen 1149 LHRMWENRQKWLSQGLDLQLFLRDARQAEATLSNQEAFLSHDNLPDSLEEAEALLKRHRDFLTTMDANDEKIEALVDTGD 1228 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 11 222211 10 11111122222110
Q ss_pred -----------HHHH-------HHhhch---hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhccccCCcc-cHHHHH
Q psy4475 438 -----------EVVE-------RIENNA---VPKLKSLL--LLREQFTTLIMQIVGFITETTARVGEVDGNSA-TVQEKI 493 (849)
Q Consensus 438 -----------~i~e-------~~~~~~---~~~l~~~l--~~~~qf~~~~~el~~wl~e~~~~~~~~~~~~~-~ve~~~ 493 (849)
.|-+ |...++ ...++.+. +..++|.++|+++..||.++.-+.++..+..+ ++..+.
T Consensus 1229 ~Lv~~~h~~s~~I~ek~~~I~~r~~~nr~rA~q~~~~L~~slelQ~flqd~~EL~~Wi~EK~l~a~Desy~~~~nl~~k~ 1308 (2473)
T KOG0517|consen 1229 KLVSEGHIDSDKIREKAQSILARRKANRERAQQRLRKLKDSLELQEFLQDCDELKLWIEEKMLMAQDESYRDARNLHSKW 1308 (2473)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHH
Confidence 0111 111111 11112222 23478999999999999999877777665444 577788
Q ss_pred HHHHHH------hHHHHHHHHHHHHHhcccCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 494 DKYDKE------NQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSS 567 (849)
Q Consensus 494 ~k~~~~------~q~el~~v~~~g~~L~~~~~~~~~~~I~~~l~~L~~~W~~L~~~~~~R~~~Le~a~~~~~~f~~~l~~ 567 (849)
.+|+.| +...|+.|...|+.|+...+ .....|+.++.+|+.+|+.|.....++.++|.++..+ ..|...+.+
T Consensus 1309 ~kHqAFeaELaank~~l~~i~~eG~~L~~ekp-e~~~~V~~kl~~L~~~W~~Le~~t~~Kg~~L~qA~~q-~~~~qs~~D 1386 (2473)
T KOG0517|consen 1309 LKHQAFEAELAANKEWLEKIEKEGQELVSEKP-ELKALVEKKLRELHKQWDELEKTTQEKGRKLFQANRQ-ELLLQSLAD 1386 (2473)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHhcCC-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHH
Confidence 888876 45569999999999998754 7889999999999999999999999999999999865 678899999
Q ss_pred HHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHhhHHhhhhhHHHHHhhhhHHHHHHhhcchhHHHHHHHHHHHHHH
Q psy4475 568 SERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEE 647 (849)
Q Consensus 568 l~~WL~~~e~~l~~~~~v~~~~~ql~~~~~~l~~~~~~v~~l~~~~~~i~~~~~~l~~~~~~~~~d~~~i~~~l~~l~~~ 647 (849)
+..||.+++..+.+.|+ |.|...+..+.+..+-+++++......+.++...+..| ...|.++..|......+.++
T Consensus 1387 ~~~~l~~le~qL~S~D~-G~DL~Svn~llkKqq~lEsem~~~~~kv~el~s~~~~m----a~~~~~a~~I~~~~~~v~~R 1461 (2473)
T KOG0517|consen 1387 AKKKLDELESQLQSDDT-GKDLTSVNDLLKKQQVLESEMEVRAQKVAELQSQAKAM----AEEGHSAENIEETTLAVLER 1461 (2473)
T ss_pred HHHHHHHHHHHhcCCCC-CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh----hccCcchhhHHHHHHHHHHH
Confidence 99999999999999988 77888888888888899999998888888887777643 22244677788888888888
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--C---chHHHHHHHHHHHHHHhhHHHHHHHH
Q psy4475 648 L---NSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTL--P---PQTLIQFIQQLEGELIDMKDKLAQMT 719 (849)
Q Consensus 648 w---~~~~~~R~~~Le~a~~~~~~f~~d~~~l~~WL~e~E~~l~~~~~--~---~~~l~~~lq~Lq~Ei~~~~~~~~~l~ 719 (849)
+ +..+..|+..|+.....+ +|..|+++-..|+.+.-...++.+. . ...+..+++.|+.||.+|+|.|+.+.
T Consensus 1462 f~~L~~Pl~~R~~~Le~S~e~h-Qf~~dvddE~~WV~ErlP~A~s~d~G~~L~~~q~l~KK~q~Lq~EI~~H~prI~~vl 1540 (2473)
T KOG0517|consen 1462 FEDLLGPLQERRKQLEASKELH-QFVRDVDDELLWVAERLPLASSTDYGENLQTVQSLHKKNQTLQAEIKGHQPRINDVL 1540 (2473)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHhhCccCCchhhccChHHHHHHHHHhHHHHHHHHhcchHHHHHH
Confidence 8 788999999999998765 8999999999999965443332211 1 11244678899999999999999999
Q ss_pred HHHhHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q psy4475 720 RTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMKWVSEKRTFLSEPYDSNN 799 (849)
Q Consensus 720 ~~g~~L~~~~~~~~e~~~i~~~l~~L~~rW~~L~~~~~~r~~~Le~~l~~~~~f~~~~~el~~Wl~~~e~~~~~~~~~~~ 799 (849)
..|+.|+... || ++..|..++.+|...|..|...+..|.+.|+.++. .++|+-++.++++||.+++.++.+..++.+
T Consensus 1541 ~~gq~Li~~~-h~-~a~~i~~~~~eLe~aW~eL~~a~e~R~~~L~~a~k-aQQY~fDaaE~EaWm~Eqel~m~see~gkD 1617 (2473)
T KOG0517|consen 1541 ERGQSLIDSG-HP-EAEAIEEKLQELESAWQELKEACELRRQRLDEAVK-AQQYYFDAAEAEAWMGEQELYMMSEEYGKD 1617 (2473)
T ss_pred HHhHHHHhcC-Cc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHhhhHHHHhhhhcccc
Confidence 9999999987 65 57799999999999999999999999999999996 899999999999999999988777776654
Q ss_pred h---HHHHHHHHHHHHHHHHhhHhhHhhhhhhHHHHh-hcccC
Q psy4475 800 L---SDLRVKLNSYTELTSFVNKHTRKVKDLSKNTQE-AYVSS 838 (849)
Q Consensus 800 l---~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~-~~~~~ 838 (849)
- ..+..+|..+...++.....+..|..-+..|.. +++.+
T Consensus 1618 E~sa~~llkKH~~Le~~v~~Y~~~i~qL~~~~~~lv~~~hP~~ 1660 (2473)
T KOG0517|consen 1618 EDSALKLLKKHQALEQEVEDYAQTIEQLAQKAQALVEANHPES 1660 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 4 345588899999999999899999888888888 66544
No 3
>KOG0040|consensus
Probab=100.00 E-value=1.3e-27 Score=273.64 Aligned_cols=703 Identities=15% Similarity=0.228 Sum_probs=513.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHhhccccccccCCCHHHHHHhhhhh
Q psy4475 8 SQAATQAKQILDQFDTLLGKVKSLLADREDQYK---DHRVYKEACDELLTWLTRARDKIPSMKQKSLSDKLAIENIVAPL 84 (849)
Q Consensus 8 ~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~lq---~~q~f~~~~~~l~~Wl~~~~~~l~~~~~~~~~~~~~~e~~l~~~ 84 (849)
+.+++.++. +++..|..|.+...+|...|. +-+.|+.+.+.--.|+.+..+.|++..++ . .+..+
T Consensus 1136 t~~~~~irq---qln~rw~~Lqr~~~E~~q~lgsahevq~fhrd~detk~~i~ek~~al~~~d~g---~------dl~sv 1203 (2399)
T KOG0040|consen 1136 TEEAAQIRQ---QLNARWRSLQRLAEERRQLLGSAHEVQRFHRDADETKEWIEEKCQALNADDPG---S------DLRSV 1203 (2399)
T ss_pred CHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhcccccc---c------hHHHH
Confidence 444555544 489999999999999998885 33899999999999999999999988542 1 23444
Q ss_pred HHHHHhhh-------hhHHHHHHHhhhhHHHhhcCCccChHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHhhhh
Q psy4475 85 ESLLNKKA-------QGELLVEHMQTTGEVVLASTSPDGQTAVKNEMKALNMKMHWIDLLNKLEHEKNRLGAAIQAGEAA 157 (849)
Q Consensus 85 q~l~~~~~-------~~~~~~~~l~~~ge~~~~~~s~~~~~~i~~~l~~l~~~~~w~~l~~~l~~~~~~le~~~~~~~~~ 157 (849)
|.|+-.+. .-..++..|-.+++-+.++-|. -.+-++.+--.+ +..|..|......|+..+...
T Consensus 1204 Qalqrkheg~erdla~L~Dkvt~l~e~a~rLtqshp~-~aeq~q~qk~el--ne~w~dl~s~~~~Rkekl~ds------- 1273 (2399)
T KOG0040|consen 1204 QALQRKHEGFERDLAALGDKVTSLGETAERLSQSHPD-AAEDLQRKQMEL--NEAWEDLQGRAKDRKEKLLDS------- 1273 (2399)
T ss_pred HHHHHHhccchhchHHHhhHHHHHHHHHHHhhhcCCc-hHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhH-------
Confidence 44443332 1123345555556666655444 344566666667 667777777766666655211
Q ss_pred hhhccCCCCccccCCCCCCchHHHHHHHHhHHHHHHHHHHHhHhhhhhCchHHHHHHHHHHHHHHhhhHHhhhhhccccc
Q psy4475 158 TACISRPSSPLESAHPPVPDREIAIRLRLEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCK 237 (849)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~l~~~~~~le~~~~~~~el~~w~~e~~~~~~d~~~~~~~ 237 (849)
. ++..|+.+.-++..|++.-+.++.- ....
T Consensus 1274 ----------------------------------------------~-d~~rfLs~~rdl~~wi~sm~~lvss---~ela 1303 (2399)
T KOG0040|consen 1274 ----------------------------------------------Y-DLQRFLSDYRDLMNWINSIGGLVSS---QELA 1303 (2399)
T ss_pred ----------------------------------------------H-HHHHHHHHHHHHHHHHHHhcchhhh---HHHh
Confidence 1 2333555555677777765555431 1111
Q ss_pred cCchhHHHHHHHHHhhHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccchhhHH-hhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy4475 238 IKAESAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKV-IESYKADVNELDKQLDAISLIEGTIN 316 (849)
Q Consensus 238 ~~~~~~~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~l~~l~~~L~ 316 (849)
-+...+.+-+.-.+..-+.++.++. ... .+..++..-.. -++++|+ |..+++.+..-...+.
T Consensus 1304 ~d~tg~eAllerhqe~rte~daRa~-tfq-------------A~eqf~~~ll~~~h~As~e---ie~kl~~~~l~r~~le 1366 (2399)
T KOG0040|consen 1304 NDVTGAEALLERHQEHRTEIDARAG-TFQ-------------AFEQFGNELLDSGHYASPE---IEKKLQAVKLERDDLE 1366 (2399)
T ss_pred hhhhhHHHHHHHHHHhhhHHHHHHH-HHH-------------HHHHHHHHHHhccCcCCHH---HHHHHHHHHhhccchH
Confidence 1112233333333333333333333 110 11111100000 1234555 8888887766666676
Q ss_pred HHHhh--hhhHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHHhcCCchhHHhhHhHHHH
Q psy4475 317 QAIGK--KDSQQK-VIESYKADVNDLDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQV 393 (849)
Q Consensus 317 ~~~~~--k~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~kl~~l~~e~~~~~~~~l~~l~~~~~~l 393 (849)
.++.. +...+| .++.|...+...+.||..-+..+ ..+.+++-++...+++.+.+...+.. ++.++..+...++.+
T Consensus 1367 ~awv~rr~~ldq~lelqLf~~dceq~e~~maare~~l-~dD~~s~D~veAl~kk~edfdkAi~~-qeqkit~l~~~a~~l 1444 (2399)
T KOG0040|consen 1367 KAWVKRRKILDQCLELQLFQRDCEQAESWMSAREAFL-ADDKSSLDSVEALIKKHEDFDKAINA-QEEKIAALQHFAESL 1444 (2399)
T ss_pred HHHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHhh-cccccccchHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHH
Confidence 66533 222455 68999999999999999999999 66666666777889999999999998 899999999999999
Q ss_pred HHHhchhhHHHhHHHHHHHHHHhhhcccchHHHHHhHhhhccHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 394 KALLSNLDAQFVDEQKLLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLLLLREQFTTLIMQIVGFIT 473 (849)
Q Consensus 394 ~~~~~~~d~~~~~~q~llee~~~~~~~~~~~~~~~l~~~l~~~~~i~e~~~~~~~~~l~~~l~~~~qf~~~~~el~~wl~ 473 (849)
+..-.. +.+.|.... ...+.+|+..+ ..| |..|...+- ....+||.+++.+|+.||.
T Consensus 1445 ia~~hy-a~e~i~~~R-~~vlDrwr~lk-----~~L---------i~krtklg~-------~qTlqqf~rd~deiE~wi~ 1501 (2399)
T KOG0040|consen 1445 IADNHY-AKEEIATRR-QQVLDRWRALK-----AQL---------IEKRSKLGD-------SQTLQQFSRDADEIENWIS 1501 (2399)
T ss_pred HHHhhh-hhHHHHHHH-HHHHHHHHHHH-----HHH---------HHHhccchH-------HHHHHHHHhhHHHHHHHHH
Confidence 877443 344443322 23333453111 111 001111111 1223799999999999999
Q ss_pred HHHhhhccccCCcc-cHHHHHHHHHHHhH------HHHHHHHHHHHHhcccCCccChHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 474 ETTARVGEVDGNSA-TVQEKIDKYDKENQ------SEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDT 546 (849)
Q Consensus 474 e~~~~~~~~~~~~~-~ve~~~~k~~~~~q------~el~~v~~~g~~L~~~~~~~~~~~I~~~l~~L~~~W~~L~~~~~~ 546 (849)
+......+..+..| +++.+..+|+.+.+ -.+..+..+|..++..........++.++..+..+|.-+..+..+
T Consensus 1502 Ek~~~a~eesykD~tniq~k~qk~qaf~~el~~~sd~i~~vi~~gN~lie~~c~g~e~a~~~~l~~l~d~w~~l~~~t~e 1581 (2399)
T KOG0040|consen 1502 EKLQTACDESYKDPTNIQSKHQKHQAFEAELHANSDRIHGVINMGNSLIERSCDGNEDAVKARLEQLADQWDHLVEKTTE 1581 (2399)
T ss_pred HHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccchhhhcccHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999988776555 67777778776522 248889999999998743378889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHhhHHhhhhhHHHHHhhhhHHHHH
Q psy4475 547 RREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKF 626 (849)
Q Consensus 547 R~~~Le~a~~~~~~f~~~l~~l~~WL~~~e~~l~~~~~v~~~~~ql~~~~~~l~~~~~~v~~l~~~~~~i~~~~~~l~~~ 626 (849)
+...|..+..+ ..|...++++..|+++++..+.+.++ +.+......+...++-+..++.........++..+.+++
T Consensus 1582 k~~klKea~kq-~~f~t~Ikd~~fwl~eve~ll~~ed~-~kdLasv~nlLkkhqlle~di~a~ed~~kd~n~qadSll-- 1657 (2399)
T KOG0040|consen 1582 KSKKLKEANKQ-QRFNTAIKDLEFWLSEVETLLASEDY-GKDLASVGNLLKKHQLLEADIVAHEDRLKDLNTQADSLL-- 1657 (2399)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH--
Confidence 99999999976 56999999999999999999999887 667777777778888888888888888888888887643
Q ss_pred HhhcchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C--CCch-HHH
Q psy4475 627 LKKDGLDLQKRITALELLSEEL---NSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDR--T--LPPQ-TLI 698 (849)
Q Consensus 627 ~~~~~~d~~~i~~~l~~l~~~w---~~~~~~R~~~Le~a~~~~~~f~~d~~~l~~WL~e~E~~l~~~--~--~~~~-~l~ 698 (849)
.+..++...+.++...++.++ ...+..|+..|..++.++ +|+.|+++..+||.++-..+++. . .++. .++
T Consensus 1658 -~s~~f~~~~i~dkr~~i~~r~~~V~~laa~~r~kl~ea~~L~-qff~d~~Deeswikek~l~V~sedygrdl~gVqnl~ 1735 (2399)
T KOG0040|consen 1658 -ESGQFDTDQIVEKRDNINKRFLNVKELAAARRAKLNEALALH-QFFRDIDDEESWIKEKKLLVSSDDYGRDLTGVQNLR 1735 (2399)
T ss_pred -hhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHhccchhhcccchhhHHHH
Confidence 333678889999999999999 677889999999999876 89999999999999988888653 1 2222 355
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 699 QFIQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHA 778 (849)
Q Consensus 699 ~~lq~Lq~Ei~~~~~~~~~l~~~g~~L~~~~~~~~e~~~i~~~l~~L~~rW~~L~~~~~~r~~~Le~~l~~~~~f~~~~~ 778 (849)
.++..+..|+.+|+|.+..|...|+++.... .-....|+.++..+...|..|......|..+|+.++. ++.|...+.
T Consensus 1736 kkhkrle~el~~hepaiQ~v~~~~ekl~d~a--~vg~~ei~~rl~~~~~~w~~lk~la~~r~~~l~es~~-~Q~f~~~~e 1812 (2399)
T KOG0040|consen 1736 KKHKRLEAELAAHEPAIQNVLDMGEKLKDKA--AVGVEEIQQRLAQFVEHWEELKELAAARGQKLEESLE-YQQFLANVE 1812 (2399)
T ss_pred HHhchhhhhhhhccHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH-HHHHHHHHH
Confidence 7889999999999999999999999998654 2234569999999999999999999999999999996 999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCchHH---HHHHHHHHHHHHHHhhHhhHhhhhhhHHHHh
Q psy4475 779 EVMKWVSEKRTFLSEPYDSNNLSD---LRVKLNSYTELTSFVNKHTRKVKDLSKNTQE 833 (849)
Q Consensus 779 el~~Wl~~~e~~~~~~~~~~~l~~---~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~ 833 (849)
+.+.|++++..++....+++++.. +..+|..|...+...+..+.-++.-|.+|..
T Consensus 1813 eeEaWinek~~l~~~~d~gd~laaiq~Ll~kh~a~e~d~~~hK~rV~~~~~~g~dll~ 1870 (2399)
T KOG0040|consen 1813 EEEAWINEKQQLLVSEDYGDTLAAVQGLLKKHEAFETDFTVHKDRVQDVCAQGEDLIN 1870 (2399)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhchHHHHH
Confidence 999999999999999888888765 4578889999888888888888888888887
No 4
>KOG0040|consensus
Probab=100.00 E-value=1.4e-26 Score=265.50 Aligned_cols=698 Identities=16% Similarity=0.228 Sum_probs=516.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-h--hHHHHHHHHHHHHHHHHHHHhhccccccccCCCH-HHHHHhhhhhH
Q psy4475 10 AATQAKQILDQFDTLLGKVKSLLADREDQY-K--DHRVYKEACDELLTWLTRARDKIPSMKQKSLSDK-LAIENIVAPLE 85 (849)
Q Consensus 10 ~~~~~~~~l~~~~~~~~~~~~~~~~r~~~l-q--~~q~f~~~~~~l~~Wl~~~~~~l~~~~~~~~~~~-~~~e~~l~~~q 85 (849)
+...|+...+.++.-|.+|+..+-.|+..| . ..|.|-.+++.-.+|+.+.+-.|+|-+ .|.- ..+..-..+.+
T Consensus 222 e~~~i~~k~~evn~aw~rl~~la~~rq~~l~~a~~~qrf~rd~~et~~wi~ek~~~l~sdd---ygrdl~~~q~l~~~h~ 298 (2399)
T KOG0040|consen 222 ELDLIQKKQDEVNAAWQRLKGLALQRQEKLFGAAEVQRFNRDVDETIAWIKEKEPVLSSDD---YGRDLASVQALQRKHE 298 (2399)
T ss_pred chHHHHHhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHhcccHHHHHHHHhhccccccccc---cchhHHHHHHHHHhcc
Confidence 455677888899999999999999999999 3 449999999999999999998887753 2222 11222233344
Q ss_pred HHHHhhhhhHHHHHHHhhhhHHHhhcCCccChHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHhhhhhhhccCCC
Q psy4475 86 SLLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAVKNEMKALNMKMHWIDLLNKLEHEKNRLGAAIQAGEAATACISRPS 165 (849)
Q Consensus 86 ~l~~~~~~~~~~~~~l~~~ge~~~~~~s~~~~~~i~~~l~~l~~~~~w~~l~~~l~~~~~~le~~~~~~~~~~~~~~~~~ 165 (849)
.++..++--++++..|-+.++-+. .+-|.+.+.|+..-..+ ...|..+......++..+....-
T Consensus 299 g~erdla~l~~kv~~l~~~a~~l~-~~hp~~a~qi~~~~~~~--~~~w~~~~~~a~~r~~~l~~s~~------------- 362 (2399)
T KOG0040|consen 299 GLERDLAALEDKVKELCAEAEKLT-LSHPDDAPQIQEKKEDL--VSSWEHIRTLATERKEKLQASYW------------- 362 (2399)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhHHH-------------
Confidence 444445555566777777788877 45677889999999999 88999998887777766632211
Q ss_pred CccccCCCCCCchHHHHHHHHhHHHHHHHHHHHhHhhhhhCchHHHHHHHHHHHHHHhhhHHhhhhhccccccCchhHHH
Q psy4475 166 SPLESAHPPVPDREIAIRLRLEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCKIKAESAQA 245 (849)
Q Consensus 166 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~l~~~~~~le~~~~~~~el~~w~~e~~~~~~d~~~~~~~~~~~~~~~ 245 (849)
++.|..+...|..|+++-.+.+| .+....+...+++
T Consensus 363 -----------------------------------------~hrf~ad~rdL~~w~~~~~aaIn---adel~~dvag~e~ 398 (2399)
T KOG0040|consen 363 -----------------------------------------LHRFLADFRDLSSWINEMKAAIN---ADELAKDVAGAEA 398 (2399)
T ss_pred -----------------------------------------HHHHhhhHHHHHHHHHHHHHHcC---chhhHHHHHHHHH
Confidence 22255555667778887776666 1111223334445
Q ss_pred HHHHHHhhHHHHHHhhhhhhhhHHHHHHHHHHHHHhhccchhhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q psy4475 246 EIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKADVNELDKQLDAISLIEGTINQAIGKKDSQ 325 (849)
Q Consensus 246 el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~l~~~L~~~~~~k~~~ 325 (849)
-|.....+-..|+.+-+. .-..+.+...+...+.+.+.++..++..+..-+-.|..+|......
T Consensus 399 lL~~hqEhK~eIds~~dS----------------f~~~~~~gq~l~~~~~~as~ev~ekl~~le~e~~~ll~lwe~r~~~ 462 (2399)
T KOG0040|consen 399 LLDRHQEHKGEIDAREDS----------------FKSADESGQKLVEAGHYASDEVREKLEILDNEKSALLELWEERRIQ 462 (2399)
T ss_pred HHHHHHHHhhhhHHHHHH----------------HhhhccccHHHHHccccccHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 555555554444443320 1111112334455566777788888888777777777777655553
Q ss_pred --HH-HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCchHH-HHHHHHHHHHHHHhcCCchhHHhhHhHHHHHHHhchhh
Q psy4475 326 --QK-VIESYKADVNDLDKQLDAISKKLDSVEHGQGVLCPV-KANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLD 401 (849)
Q Consensus 326 --~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~-~l~kl~~l~~e~~~~~~~~l~~l~~~~~~l~~~~~~~d 401 (849)
+| .++.|.+...+...||...+..|...+-|-.+++.. .+++++++...+.. +..++..+...+..++..-. ++
T Consensus 463 yeqcmd~~lfyrdteq~d~wmskqeafl~nedlg~sl~S~e~l~kkhedfEks~~a-QEeki~~~d~~atkli~~~h-y~ 540 (2399)
T KOG0040|consen 463 YEQCMDLQLFYRDTEQVDTWMSKQEAFLANEDLGDSLDSVEALLKKHEDFEKSLAA-QEEKIIALDEFATKLIQGQH-YA 540 (2399)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhhccc-cc
Confidence 33 678889999999999999999999988774455554 68999999999998 88999999999998886532 33
Q ss_pred HHHhHHHH--HHHHHHhhhcccchHHHHHhHhhhccHHHHHHHHhhchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy4475 402 AQFVDEQK--LLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLL---LLREQFTTLIMQIVGFITETT 476 (849)
Q Consensus 402 ~~~~~~q~--llee~~~~~~~~~~~~~~~l~~~l~~~~~i~e~~~~~~~~~l~~~l---~~~~qf~~~~~el~~wl~e~~ 476 (849)
.+.+.... +++.-.+- +.. ..+.+.++ ...++|+++++++.+||+++.
T Consensus 541 ~~dv~~rr~~ll~rr~~l-------~e~--------------------a~~r~~~lk~s~~~q~~~rd~de~~~wi~Ek~ 593 (2399)
T KOG0040|consen 541 AEDVAARRDALLARRDAL-------REK--------------------AATRRRLLKESLLLQQFYRDSDELKSWINEKL 593 (2399)
T ss_pred chhHHHHHHHHHHHHHHH-------HHH--------------------HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 22221111 11100000 000 00111111 245899999999999999998
Q ss_pred hhhcccc-CCcccHHHHHHHHHHH------hHHHHHHHHHHHHHhcccCCccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 477 ARVGEVD-GNSATVQEKIDKYDKE------NQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRRE 549 (849)
Q Consensus 477 ~~~~~~~-~~~~~ve~~~~k~~~~------~q~el~~v~~~g~~L~~~~~~~~~~~I~~~l~~L~~~W~~L~~~~~~R~~ 549 (849)
....+-. .+++++..++.+++.+ +...++.+...|+.++... ++....|..++.++.+-|..+.........
T Consensus 594 ~~a~dd~y~d~~nlk~kvqk~q~fe~el~An~~r~~~i~~~g~~~i~~~-h~A~d~v~~r~~ev~~Lw~~l~~aT~~kg~ 672 (2399)
T KOG0040|consen 594 KTATDESYKDPTNLKGKVQKHQNFEKELAANKSRLEDIQKTGQELIEGG-HYAADNVTTRLSEVASLWEELLEATKKKGT 672 (2399)
T ss_pred cccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh-hHHHHHHhHhHHHHHHHHHHHHhhcccccH
Confidence 8876543 4566777777776654 4557999999999999875 489999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHhhHHhhhhhHHHHHhhhhHHHHHHhh
Q psy4475 550 KLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKK 629 (849)
Q Consensus 550 ~Le~a~~~~~~f~~~l~~l~~WL~~~e~~l~~~~~v~~~~~ql~~~~~~l~~~~~~v~~l~~~~~~i~~~~~~l~~~~~~ 629 (849)
.|..+-.+ .+|...++++..||.+.+..|.+.++ |++..+.+...+++-.+.+.+......+..+..++..+....
T Consensus 673 kl~ea~qq-~qf~~n~edve~wl~e~e~ql~sed~-gkdl~~vqn~~kk~~lLe~~v~a~~d~vd~~~~~a~~fee~~-- 748 (2399)
T KOG0040|consen 673 KLREANQQ-QQFNRNIEDIELWLSEVEGQVASEDY-GKDLTSVQNLQKKHGLLESDVAAHQDRVDGITDLAAQFQEIG-- 748 (2399)
T ss_pred HHHHHHHh-hhhhccHHHHHHHHHHHHHHHhhhhc-CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHc--
Confidence 99998865 57888999999999999999999888 778899999989999999999888888887777776544333
Q ss_pred cchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--C--Cch-HHHHHH
Q psy4475 630 DGLDLQKRITALELLSEEL---NSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRT--L--PPQ-TLIQFI 701 (849)
Q Consensus 630 ~~~d~~~i~~~l~~l~~~w---~~~~~~R~~~Le~a~~~~~~f~~d~~~l~~WL~e~E~~l~~~~--~--~~~-~l~~~l 701 (849)
+++...+...-..|..++ ...+..|.++|-+.+.. ++.+.|..+-..|+.++|....+.. . ++. .+..++
T Consensus 749 -h~da~~i~~kqe~L~~r~eal~dp~a~rk~Kl~d~l~~-~~l~rd~edE~awi~E~E~~a~st~~gkdlI~~qnl~~k~ 826 (2399)
T KOG0040|consen 749 -HFDAKNIRAKQENLVARYEALKEPLATRKQKLLDSLQL-QQLFRDTEDEEAWIREKEPIAASTNRGKDLIGVQNLLKKH 826 (2399)
T ss_pred -CCcHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhh-hhhhhchHHHHHHHhhcchhccchhcchhHHHHHHHHHHH
Confidence 566777777777777777 78899999999999976 4788899999999999998765421 1 221 234778
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 702 QQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVM 781 (849)
Q Consensus 702 q~Lq~Ei~~~~~~~~~l~~~g~~L~~~~~~~~e~~~i~~~l~~L~~rW~~L~~~~~~r~~~Le~~l~~~~~f~~~~~el~ 781 (849)
+.+.++|.+|.+.+..|...|..|+..+ ++.++.+..++..|+..|..+..+...|+..|+..+. .++|..++.+..
T Consensus 827 q~~~~~ia~he~ri~~i~~r~~~m~~~~--~f~aedvk~~~~~L~~~~~slk~ka~~r~~dle~s~q-~~qy~ad~~eae 903 (2399)
T KOG0040|consen 827 QALLAEIANHEPRIQEVTSRGNKMVEEG--HFAAEDVRSRLKSLNQNWESLKAKASQRRQDLEDSLQ-AQQYLADANEAE 903 (2399)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH-HHHHHHHHhhHH
Confidence 8999999999999999999999999986 5678899999999999999999999999999999996 789999999999
Q ss_pred HHHHHHHhhhcCCCCCCc---hHHHHHHHHHHHHHHHHhhHhhHhhh
Q psy4475 782 KWVSEKRTFLSEPYDSNN---LSDLRVKLNSYTELTSFVNKHTRKVK 825 (849)
Q Consensus 782 ~Wl~~~e~~~~~~~~~~~---l~~~~~~l~~~~~~~~~~~~~~~~l~ 825 (849)
.|+.+++++.....++.. -.....++.++...++.....+..|.
T Consensus 904 ~w~~ekEpi~~stdygKdedsa~allkkhea~~~dl~af~~~i~~lr 950 (2399)
T KOG0040|consen 904 SWMREKEPIVGSTDYGKDEDSAEALLKKHEALLSDLEAFGDSIQALR 950 (2399)
T ss_pred HHhhccCcccccccccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999988766655543 34455667777666665555544443
No 5
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=99.51 E-value=6.4e-12 Score=128.41 Aligned_cols=203 Identities=17% Similarity=0.262 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHhhHHhhhhhHHHHHhhhhHHHHHHhhcchhHHHH
Q psy4475 558 WEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKKDGLDLQKR 637 (849)
Q Consensus 558 ~~~f~~~l~~l~~WL~~~e~~l~~~~~v~~~~~ql~~~~~~l~~~~~~v~~l~~~~~~i~~~~~~l~~~~~~~~~d~~~i 637 (849)
+..|...+..+..||.+++..+.+..+.. +...++.....++.+..++....+.+..+...+..|.. ..+.+...+
T Consensus 2 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~-d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~---~~~~~~~~i 77 (213)
T cd00176 2 LQQFLRDADELEAWLSEKEELLSSTDYGD-DLESVEALLKKHEALEAELAAHEERVEALNELGEQLIE---EGHPDAEEI 77 (213)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCcccCC-CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHh---cCCCChHHH
Confidence 46799999999999999999999987755 77788888888888888888888888888888776543 334678899
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--hHH---HHHHHHHHHHHH
Q psy4475 638 ITALELLSEEL---NSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPP--QTL---IQFIQQLEGELI 709 (849)
Q Consensus 638 ~~~l~~l~~~w---~~~~~~R~~~Le~a~~~~~~f~~d~~~l~~WL~e~E~~l~~~~~~~--~~l---~~~lq~Lq~Ei~ 709 (849)
...++.++.+| ...+..|...|+.+...+..|. .+..+..||.+++..+...++.+ ..+ ...++.|..+|.
T Consensus 78 ~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~-~~~~l~~wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 156 (213)
T cd00176 78 QERLEELNQRWEELRELAEERRQRLEEALDLQQFFR-DADDLEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELE 156 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 8889999999999998875554 56669999999999997665442 333 245679999999
Q ss_pred hhHHHHHHHHHHHhHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 710 DMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGC 766 (849)
Q Consensus 710 ~~~~~~~~l~~~g~~L~~~~~~~~e~~~i~~~l~~L~~rW~~L~~~~~~r~~~Le~~ 766 (849)
.+.+.+..+...|..|...+ ++.....+..++..+..+|..|...+.+|...|+.+
T Consensus 157 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~~ 212 (213)
T cd00176 157 AHEPRLKSLNELAEELLEEG-HPDADEEIEEKLEELNERWEELLELAEERQKKLEEA 212 (213)
T ss_pred hchHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999988 555557899999999999999999999999998864
No 6
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=99.40 E-value=1.1e-10 Score=119.37 Aligned_cols=199 Identities=18% Similarity=0.253 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCc--ccHHHHHHHHHHH------hHHHHHHHHHHHHHhcccCCccChHHHHHHH
Q psy4475 459 EQFTTLIMQIVGFITETTARVGEVDGNS--ATVQEKIDKYDKE------NQSEIDMLNDVWKEIKPKADQESDQLIEDQI 530 (849)
Q Consensus 459 ~qf~~~~~el~~wl~e~~~~~~~~~~~~--~~ve~~~~k~~~~------~q~el~~v~~~g~~L~~~~~~~~~~~I~~~l 530 (849)
..|...+.++..||.+.+..+.....+. ..++..+++|+.+ .+..++.++..|+.|+..++ +....|...+
T Consensus 3 ~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~-~~~~~i~~~~ 81 (213)
T cd00176 3 QQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGH-PDAEEIQERL 81 (213)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCC-CChHHHHHHH
Confidence 6799999999999999999987665443 3466777777755 34569999999999998776 7999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHhhHHhhh
Q psy4475 531 ERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEK 610 (849)
Q Consensus 531 ~~L~~~W~~L~~~~~~R~~~Le~a~~~~~~f~~~l~~l~~WL~~~e~~l~~~~~v~~~~~ql~~~~~~l~~~~~~v~~l~ 610 (849)
..|+.+|+.|+..+..|...|+.++..+..|..... +..||.+++..+....+.. +...++.+...++.+...+....
T Consensus 82 ~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~-l~~wl~~~e~~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~ 159 (213)
T cd00176 82 EELNQRWEELRELAEERRQRLEEALDLQQFFRDADD-LEQWLEEKEAALASEDLGK-DLESVEELLKKHKELEEELEAHE 159 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCcccCC-CHHHHHHHHHHHHHHHHHHHhch
Confidence 999999999999999999999999999888887665 9999999999999877744 66777777777888888888777
Q ss_pred hhHHHHHhhhhHHHHHHhhcchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q psy4475 611 PKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEEL---NSKLEEKGKEVQKA 662 (849)
Q Consensus 611 ~~~~~i~~~~~~l~~~~~~~~~d~~~i~~~l~~l~~~w---~~~~~~R~~~Le~a 662 (849)
+....+...+..|..... +.....+...++.+..+| ...+..|...|+.+
T Consensus 160 ~~~~~~~~~~~~l~~~~~--~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~~ 212 (213)
T cd00176 160 PRLKSLNELAEELLEEGH--PDADEEIEEKLEELNERWEELLELAEERQKKLEEA 212 (213)
T ss_pred HHHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777777776544332 333478889999999999 67788888877653
No 7
>KOG4286|consensus
Probab=99.37 E-value=8.9e-10 Score=122.14 Aligned_cols=296 Identities=13% Similarity=0.200 Sum_probs=213.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCcccH------HHHHHHHHHHhHHHHH--HHHHHHHHhcccCCc-cChHHHHH
Q psy4475 458 REQFTTLIMQIVGFITETTARVGEVDGNSATV------QEKIDKYDKENQSEID--MLNDVWKEIKPKADQ-ESDQLIED 528 (849)
Q Consensus 458 ~~qf~~~~~el~~wl~e~~~~~~~~~~~~~~v------e~~~~k~~~~~q~el~--~v~~~g~~L~~~~~~-~~~~~I~~ 528 (849)
.+.|..++.++..|+. .+.......+ ....+.+.+ .+.+++ .|-..|+.|+.+... .++..+.
T Consensus 3 ~q~~~~~l~~f~~w~l------~d~~~~~~~l~dt~~~~~~~~~~~~-~~~e~~a~~v~~~~~kl~~~l~~~~~~~~l~- 74 (966)
T KOG4286|consen 3 LQQFPLDLEKFLAWLL------QDATRKERLLEDSKGVKELMKQWQD-LQGEIEAHNLDENSQKILRSLEGSDDAVLLQ- 74 (966)
T ss_pred hhhhhhhHHHHHHHHH------hhhhhhHhhhhcccccHHHHHHHhc-cccccccccCchHHHHHHHHhcCCccchHHH-
Confidence 4678889999999972 1111111111 111122221 233333 244455666554432 3444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHhhHHh
Q psy4475 529 QIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVES 608 (849)
Q Consensus 529 ~l~~L~~~W~~L~~~~~~R~~~Le~a~~~~~~f~~~l~~l~~WL~~~e~~l~~~~~v~~~~~ql~~~~~~l~~~~~~v~~ 608 (849)
-+|.+|+.|..+...-+..|+.+..+|..+...+.++..||.-+...++...|.|++..-++.+...+..++.++.+
T Consensus 75 ---~mn~~w~~l~kks~~ir~~lea~~~~w~kl~~~l~el~~wl~~kd~el~~q~p~ggd~~avq~q~~~~~a~~re~k~ 151 (966)
T KOG4286|consen 75 ---LMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKT 151 (966)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhh
Confidence 39999999999999999999999999999999999999999999999999999999988888877777777776665
Q ss_pred hhhhHHHHHhhhhHHHHHHhhc---------------chh-----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy4475 609 EKPKVSQISTLAAPIVKFLKKD---------------GLD-----LQKRITALELLSEEL---NSKLEEKGKEVQKAKAM 665 (849)
Q Consensus 609 l~~~~~~i~~~~~~l~~~~~~~---------------~~d-----~~~i~~~l~~l~~~w---~~~~~~R~~~Le~a~~~ 665 (849)
-.+.+-...+.+. .|+... |.. ...+..+-..+++.| ...+...++..+.|+..
T Consensus 152 k~~~~~s~~e~a~---~fl~~~p~e~~e~~~~~~e~~p~~r~q~~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~ 228 (966)
T KOG4286|consen 152 KEPVIMSTLETAR---IFLTEQPLEGLEKYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLER 228 (966)
T ss_pred cccHHHHHHHHHH---HHHhcCCCcchhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHH
Confidence 5433322222221 122221 111 112234446677778 56678889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHH-------HHHHHHHHHHHhhHHHHHHHHHHHhHhhhcCCChHHHHHH
Q psy4475 666 RAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTLI-------QFIQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALI 738 (849)
Q Consensus 666 ~~~f~~d~~~l~~WL~e~E~~l~~~~~~~~~l~-------~~lq~Lq~Ei~~~~~~~~~l~~~g~~L~~~~~~~~e~~~i 738 (849)
++.++..++++..-|.++|.......++++.+. +++..|.+||...+..|+.+++.+.+|.....+++ ...
T Consensus 229 l~elq~a~~el~~~l~~ae~~~~~w~pvgdl~idsl~~h~e~~~~~~~ei~p~~~~v~~vndla~ql~~~d~~ls--~~~ 306 (966)
T KOG4286|consen 229 LQELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLKENVSHVNDLARQLTTLDIQLS--PYN 306 (966)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhhccccHHHHHHhHHHHHHHHHHHHHhhcchHhhchhhHHHHHHHhhhcccCCC--hhh
Confidence 999999999999999999999988887765432 44558999999999999999999999876543443 356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 739 QSTILSFTEQMQQIEMKLNERKKEVTGCDDA 769 (849)
Q Consensus 739 ~~~l~~L~~rW~~L~~~~~~r~~~Le~~l~~ 769 (849)
...|+++|.||.-|+..+..|..+|..+...
T Consensus 307 ~~~le~~n~rwk~Lq~SV~~rl~qlrna~~d 337 (966)
T KOG4286|consen 307 LSTLEDLNTRWKLLQVSVPDRLTQLRNAHRD 337 (966)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999998863
No 8
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=98.83 E-value=6.2e-08 Score=86.66 Aligned_cols=98 Identities=15% Similarity=0.344 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC--CchHH---HHHHHHHHHHHHhhHHHHHHHHHHHhHhhhcCCChHHHHHHHH
Q psy4475 666 RAAYLTDVEKIGTWLQDAEAKIQDRTL--PPQTL---IQFIQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQS 740 (849)
Q Consensus 666 ~~~f~~d~~~l~~WL~e~E~~l~~~~~--~~~~l---~~~lq~Lq~Ei~~~~~~~~~l~~~g~~L~~~~~~~~e~~~i~~ 740 (849)
++.|+.++++|..||.+++..+...++ .+..+ ..+++.|..+|..+.+.+..|+..|..|... +|.++..|+.
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~--~~~~~~~i~~ 80 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDS--GPEDSDEIQE 80 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--THTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHc--CCCcHHHHHH
Confidence 579999999999999999999955443 22222 2566799999999999999999999999554 4778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 741 TILSFTEQMQQIEMKLNERKKEVTG 765 (849)
Q Consensus 741 ~l~~L~~rW~~L~~~~~~r~~~Le~ 765 (849)
++..|+.+|..|+..+..|...|++
T Consensus 81 ~~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 81 KLEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999974
No 9
>smart00150 SPEC Spectrin repeats.
Probab=98.72 E-value=1.2e-07 Score=84.28 Aligned_cols=95 Identities=17% Similarity=0.414 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC--chHH---HHHHHHHHHHHHhhHHHHHHHHHHHhHhhhcCCChHHHHHHHHHH
Q psy4475 668 AYLTDVEKIGTWLQDAEAKIQDRTLP--PQTL---IQFIQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTI 742 (849)
Q Consensus 668 ~f~~d~~~l~~WL~e~E~~l~~~~~~--~~~l---~~~lq~Lq~Ei~~~~~~~~~l~~~g~~L~~~~~~~~e~~~i~~~l 742 (849)
.|..++.++..||.+++..+.+.+.. +..+ .++++.|+.+|..+.+.|..+...|..|+..+ +.++..|..++
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~--~~~~~~i~~~~ 79 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLASEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEG--HPDAEEIEERL 79 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCcHHHHHHHH
Confidence 69999999999999999888654432 2222 35677999999999999999999999999885 45678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4475 743 LSFTEQMQQIEMKLNERKKEVT 764 (849)
Q Consensus 743 ~~L~~rW~~L~~~~~~r~~~Le 764 (849)
..|+.+|..|+..+..|...|+
T Consensus 80 ~~l~~~w~~l~~~~~~r~~~L~ 101 (101)
T smart00150 80 EELNERWEELKELAEERRQKLE 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998773
No 10
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=98.53 E-value=1.5e-06 Score=77.59 Aligned_cols=103 Identities=18% Similarity=0.402 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccccccccCCCHHHHHHhhhhhHHHHHhhhhhHHHHHHHhhhhHHHhhcCCccChHHH
Q psy4475 41 DHRVYKEACDELLTWLTRARDKIPSMKQKSLSDKLAIENIVAPLESLLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAV 120 (849)
Q Consensus 41 ~~q~f~~~~~~l~~Wl~~~~~~l~~~~~~~~~~~~~~e~~l~~~q~l~~~~~~~~~~~~~l~~~ge~~~~~~s~~~~~~i 120 (849)
..+.|...+++|..||..++..|.+.. ++.++..++..+.+++.|...+..+...++.++..|..++ ++++.+...|
T Consensus 2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~--~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~-~~~~~~~~~i 78 (105)
T PF00435_consen 2 QLQQFQQEADELLDWLQETEAKLSSSE--PGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLI-DSGPEDSDEI 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCT--HSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HcCCCcHHHH
Confidence 358999999999999999999996653 4789999999999999999999999999999999999994 6678889999
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhHHH
Q psy4475 121 KNEMKALNMKMHWIDLLNKLEHEKNRLG 148 (849)
Q Consensus 121 ~~~l~~l~~~~~w~~l~~~l~~~~~~le 148 (849)
+..+..| +.+|+.|+..+..+...|+
T Consensus 79 ~~~~~~l--~~~w~~l~~~~~~r~~~Le 104 (105)
T PF00435_consen 79 QEKLEEL--NQRWEALCELVEERRQKLE 104 (105)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHCC
Confidence 9999999 8899999999999998886
No 11
>KOG4286|consensus
Probab=98.44 E-value=3e-05 Score=87.10 Aligned_cols=190 Identities=9% Similarity=0.126 Sum_probs=156.7
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH------HHHHHHHHHHHHhhHHH
Q psy4475 644 LSEEL---NSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTL------IQFIQQLEGELIDMKDK 714 (849)
Q Consensus 644 l~~~w---~~~~~~R~~~Le~a~~~~~~f~~d~~~l~~WL~e~E~~l~~~~~~~~~l------~~~lq~Lq~Ei~~~~~~ 714 (849)
++.+| ..+...-+.+|+.+-..|.+++..+.++..|+.-+...+.+.-|++.++ .+.++.|++||.+..+.
T Consensus 76 mn~~w~~l~kks~~ir~~lea~~~~w~kl~~~l~el~~wl~~kd~el~~q~p~ggd~~avq~q~~~~~a~~re~k~k~~~ 155 (966)
T KOG4286|consen 76 MNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTKEPV 155 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhhcccH
Confidence 88899 5667777889999999999999999999999999999888766655443 13456999999999999
Q ss_pred HHHHHHHHhHhhhcCC-------------ChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 715 LAQMTRTGNEISQHTE-------------SNEER-----ALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSL 776 (849)
Q Consensus 715 ~~~l~~~g~~L~~~~~-------------~~~e~-----~~i~~~l~~L~~rW~~L~~~~~~r~~~Le~~l~~~~~f~~~ 776 (849)
|.+..+.+...+...+ +|.+. ..+...-..++..|..|...+.+-.++++.++..++.+...
T Consensus 156 ~~s~~e~a~~fl~~~p~e~~e~~~~~~e~~p~~r~q~~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a 235 (966)
T KOG4286|consen 156 IMSTLETARIFLTEQPLEGLEKYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 235 (966)
T ss_pred HHHHHHHHHHHHhcCCCcchhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999987544210 12111 12333446788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc-----CCCCCCchHHHHHHHHHHHHHHHHhhHhhHhhhhhhHHHHh
Q psy4475 777 HAEVMKWVSEKRTFLS-----EPYDSNNLSDLRVKLNSYTELTSFVNKHTRKVKDLSKNTQE 833 (849)
Q Consensus 777 ~~el~~Wl~~~e~~~~-----~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~ 833 (849)
++++..-|.+.+.... .++.+++++....++..|.+.++-++..++.+++++.+|..
T Consensus 236 ~~el~~~l~~ae~~~~~w~pvgdl~idsl~~h~e~~~~~~~ei~p~~~~v~~vndla~ql~~ 297 (966)
T KOG4286|consen 236 TDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLKENVSHVNDLARQLTT 297 (966)
T ss_pred HHHHHHhhhHHHhhhhccccHHHHHHhHHHHHHHHHHHHHhhcchHhhchhhHHHHHHHhhh
Confidence 9999999998885432 34678899999999999999999999999999999999987
No 12
>smart00150 SPEC Spectrin repeats.
Probab=98.34 E-value=3.9e-06 Score=74.33 Aligned_cols=99 Identities=20% Similarity=0.336 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccCCCHHHHHHhhhhhHHHHHhhhhhHHHHHHHhhhhHHHhhcCCccChHHHHHH
Q psy4475 44 VYKEACDELLTWLTRARDKIPSMKQKSLSDKLAIENIVAPLESLLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAVKNE 123 (849)
Q Consensus 44 ~f~~~~~~l~~Wl~~~~~~l~~~~~~~~~~~~~~e~~l~~~q~l~~~~~~~~~~~~~l~~~ge~~~~~~s~~~~~~i~~~ 123 (849)
.|...+.+|..||.+++..+.+.. ++.+...++..+.+.+.|...+..+...++.++..|+.++.+ ++.+...|...
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~~~~--~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~-~~~~~~~i~~~ 78 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLASED--LGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEE-GHPDAEEIEER 78 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCcHHHHHHH
Confidence 699999999999999998887753 457888999999999999999999999999999999999977 56678899999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhHH
Q psy4475 124 MKALNMKMHWIDLLNKLEHEKNRL 147 (849)
Q Consensus 124 l~~l~~~~~w~~l~~~l~~~~~~l 147 (849)
+..| +.+|+.|+..+..|+.+|
T Consensus 79 ~~~l--~~~w~~l~~~~~~r~~~L 100 (101)
T smart00150 79 LEEL--NERWEELKELAEERRQKL 100 (101)
T ss_pred HHHH--HHHHHHHHHHHHHHHHhc
Confidence 9999 889999999999988876
No 13
>KOG0994|consensus
Probab=97.82 E-value=0.16 Score=60.82 Aligned_cols=126 Identities=12% Similarity=0.168 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccHHHHHHHHHHH---------------hHHHHHHHHHHHHHhcccC-
Q psy4475 455 LLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKE---------------NQSEIDMLNDVWKEIKPKA- 518 (849)
Q Consensus 455 l~~~~qf~~~~~el~~wl~e~~~~~~~~~~~~~~ve~~~~k~~~~---------------~q~el~~v~~~g~~L~~~~- 518 (849)
-....|+.....++...|......+..-...+++|+....+..+. -+..|.++.. ...++...
T Consensus 1460 ~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~n-Vd~IL~~T~ 1538 (1758)
T KOG0994|consen 1460 NASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPN-VDAILSRTK 1538 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccc-HHHHHHhhh
Confidence 344566666667777777777666665555666665443332211 1111222222 11222222
Q ss_pred Cc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4475 519 DQ-ESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQ 581 (849)
Q Consensus 519 ~~-~~~~~I~~~l~~L~~~W~~L~~~~~~R~~~Le~a~~~~~~f~~~l~~l~~WL~~~e~~l~~ 581 (849)
+. .-+..++..-...++.=+.+...++.....|+.+-+....-+++|+....=+..+...|..
T Consensus 1539 ~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~k 1602 (1758)
T KOG0994|consen 1539 GDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAK 1602 (1758)
T ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 2344455556666666666777777777777776665555556666665555555555543
No 14
>KOG0994|consensus
Probab=97.36 E-value=0.63 Score=55.97 Aligned_cols=54 Identities=7% Similarity=0.109 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 734 ERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMKWVSEK 787 (849)
Q Consensus 734 e~~~i~~~l~~L~~rW~~L~~~~~~r~~~Le~~l~~~~~f~~~~~el~~Wl~~~ 787 (849)
.+...+..++.|...+..+...+..|......+.....++......|..=.+.+
T Consensus 1655 ~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~k 1708 (1758)
T KOG0994|consen 1655 QALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEK 1708 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888988888888888777777766667776666665544444
No 15
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.13 E-value=23 Score=41.83 Aligned_cols=51 Identities=12% Similarity=0.334 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHHhcCCchhHHhhHhHHHHH
Q psy4475 332 YKADVNDLDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVK 394 (849)
Q Consensus 332 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~kl~~l~~e~~~~~~~~l~~l~~~~~~l~ 394 (849)
|...+.++..|...+.. .|+...+.+++.+. +.+.-...+...+..+..+.
T Consensus 23 ~~k~i~~Le~~k~~l~~----------~pv~~el~kvk~l~--l~Gqt~~~fe~w~~~w~~i~ 73 (560)
T PF06160_consen 23 YYKEIDELEERKNELMN----------LPVADELSKVKKLN--LTGQTEEKFEEWRQKWDEIV 73 (560)
T ss_pred HHHHHHHHHHHHHHHHc----------CCHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHH
Confidence 45556666666665543 46666677666662 22212344555555555554
No 16
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=88.11 E-value=63 Score=38.26 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=21.9
Q ss_pred HHhcccCCc--cChHHHHHHHHHHHHHHHHHHHHH
Q psy4475 512 KEIKPKADQ--ESDQLIEDQIERINDQWNTLVGDL 544 (849)
Q Consensus 512 ~~L~~~~~~--~~~~~I~~~l~~L~~~W~~L~~~~ 544 (849)
+.|...... +.-+.|..+|..+...+..+....
T Consensus 154 k~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~ 188 (569)
T PRK04778 154 KSLLANRFSFGPALDELEKQLENLEEEFSQFVELT 188 (569)
T ss_pred HHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444333 677778888888888887776654
No 17
>KOG0161|consensus
Probab=86.18 E-value=1.4e+02 Score=40.22 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 737 LIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMKWVSEKR 788 (849)
Q Consensus 737 ~i~~~l~~L~~rW~~L~~~~~~r~~~Le~~l~~~~~f~~~~~el~~Wl~~~e 788 (849)
.+...+.....|...+..-+.+.+..++.+...=...-..+.++..=++...
T Consensus 1657 e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~ 1708 (1930)
T KOG0161|consen 1657 ELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELN 1708 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 5667777777888888888888888888877655555566666665555543
No 18
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=80.49 E-value=1.1e+02 Score=34.86 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHhhHH
Q psy4475 529 QIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVE 607 (849)
Q Consensus 529 ~l~~L~~~W~~L~~~~~~R~~~Le~a~~~~~~f~~~l~~l~~WL~~~e~~l~~~~~v~~~~~ql~~~~~~l~~~~~~v~ 607 (849)
++....+.|..|..-+..+..++-+++. .|...++.+..-++.-+..-++.+|+. +..-+....+.+..+++-++
T Consensus 140 ~i~~~~ely~elr~~vl~n~~~~Ge~~~---~lEk~Le~i~~~l~qf~~lt~~Gd~ie-A~evl~~~ee~~~~L~~~~e 214 (570)
T COG4477 140 EIDHVLELYEELRRDVLANRHQYGEAAP---ELEKKLENIEEELSQFVELTSSGDYIE-AREVLEEAEEHMIALRSIME 214 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhH---HHHHHHHHHHHHHHHHHHhccCCChhH-HHHHHHHHHHHHHHHHHHHH
Confidence 4455667778887777777766655553 466666666666666666666677733 23333444434444433333
No 19
>KOG4302|consensus
Probab=75.53 E-value=1.8e+02 Score=34.59 Aligned_cols=132 Identities=14% Similarity=0.181 Sum_probs=76.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHhhccccccccCCCHHHHHHhhhhhHH
Q psy4475 8 SQAATQAKQILDQFDTLLGKVKSLLADREDQYKDH-RVYKEACDELLTWLTRARDKIPSMKQKSLSDKLAIENIVAPLES 86 (849)
Q Consensus 8 ~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~lq~~-q~f~~~~~~l~~Wl~~~~~~l~~~~~~~~~~~~~~e~~l~~~q~ 86 (849)
-..-......+..++..|++++.-+..|-..+-+. +-|...++.+..=.++....|-. .+...-.++-.
T Consensus 10 ~~~~~t~~~~~~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~----------~ia~~eael~~ 79 (660)
T KOG4302|consen 10 LQIEATCGNLLNELQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQ----------EIAVIEAELND 79 (660)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 34566778889999999999999999998666322 33333333332222222222100 01111112222
Q ss_pred HHHhhhhhHHHHHHHhhhhHHHhhcC-CccChHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHhhhhhhhccCC
Q psy4475 87 LLNKKAQGELLVEHMQTTGEVVLAST-SPDGQTAVKNEMKALNMKMHWIDLLNKLEHEKNRLGAAIQAGEAATACISRP 164 (849)
Q Consensus 87 l~~~~~~~~~~~~~l~~~ge~~~~~~-s~~~~~~i~~~l~~l~~~~~w~~l~~~l~~~~~~le~~~~~~~~~~~~~~~~ 164 (849)
|...+ |+...... ++-+..-|+++|..| ..--..+...-..|+.++.....+.+.+-..++++
T Consensus 80 l~s~l-------------~~~~~~~~~~~k~e~tLke~l~~l--~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~ 143 (660)
T KOG4302|consen 80 LCSAL-------------GEPSIIGEISDKIEGTLKEQLESL--KPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGP 143 (660)
T ss_pred HHHHh-------------CCcccccccccccCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 22222 22222221 111222589999999 66777777788888888888888888888888777
No 20
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=73.70 E-value=2.9e+02 Score=36.10 Aligned_cols=85 Identities=14% Similarity=0.222 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHH
Q psy4475 522 SDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQW-EQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELE 600 (849)
Q Consensus 522 ~~~~I~~~l~~L~~~W~~L~~~~~~R~~~Le~a~~~~-~~f~~~l~~l~~WL~~~e~~l~~~~~v~~~~~ql~~~~~~l~ 600 (849)
-...+.+....++..|..+..........+...+... ..+...++.+..|... .|++. |.|...|..++..|.
T Consensus 708 ~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~---eL~~~---GvD~~~I~~l~~~i~ 781 (1201)
T PF12128_consen 708 LKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQ---ELAGK---GVDPERIQQLKQEIE 781 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhC---CCCHHHHHHHHHHHH
Confidence 3455666666778888888888888887777666432 3477788888888863 33332 445667777777777
Q ss_pred HHHhhHHhhhhh
Q psy4475 601 SLLGTVESEKPK 612 (849)
Q Consensus 601 ~~~~~v~~l~~~ 612 (849)
.+...+..+...
T Consensus 782 ~L~~~l~~ie~~ 793 (1201)
T PF12128_consen 782 QLEKELKRIEER 793 (1201)
T ss_pred HHHHHHHHHHHh
Confidence 666666655433
No 21
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=67.12 E-value=1.6e+02 Score=30.42 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhHhhhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 699 QFIQQLEGELIDMKDKLAQMTRTGNEISQHTES-NEERALIQSTILSFTEQMQQIEMKL 756 (849)
Q Consensus 699 ~~lq~Lq~Ei~~~~~~~~~l~~~g~~L~~~~~~-~~e~~~i~~~l~~L~~rW~~L~~~~ 756 (849)
.++..|..+|......+.++-.........-.. ...-..+..+|.....|+......+
T Consensus 141 ~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v 199 (237)
T PF00261_consen 141 SKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRV 199 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566678888888888887777776655432100 1112244444444444444444333
No 22
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=64.90 E-value=2.9e+02 Score=32.64 Aligned_cols=27 Identities=11% Similarity=0.246 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHH-hHHHHHHHHHh
Q psy4475 14 AKQILDQFDTLLGKVK-SLLADREDQYK 40 (849)
Q Consensus 14 ~~~~l~~~~~~~~~~~-~~~~~r~~~lq 40 (849)
........+..|+.+. ....+....+-
T Consensus 58 t~~~fe~w~~~w~~i~~~~~~~ie~~L~ 85 (560)
T PF06160_consen 58 TEEKFEEWRQKWDEIVTKQLPEIEEQLF 85 (560)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4556677777787555 66777777773
No 23
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=63.81 E-value=1.8e+02 Score=29.96 Aligned_cols=30 Identities=27% Similarity=0.327 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4475 550 KLTELAEQWEQLEKLMSSSERTLKGVETSV 579 (849)
Q Consensus 550 ~Le~a~~~~~~f~~~l~~l~~WL~~~e~~l 579 (849)
.|..+......+...+..+..-+..++..+
T Consensus 23 ~l~~~~~~~~~aE~e~~~l~rri~~lE~~l 52 (237)
T PF00261_consen 23 KLKEAEKRAEKAEAEVASLQRRIQLLEEEL 52 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444555454444433
No 24
>PRK02224 chromosome segregation protein; Provisional
Probab=60.33 E-value=4.4e+02 Score=33.14 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=16.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 731 SNEERALIQSTILSFTEQMQQIEMKLNERKKEVTG 765 (849)
Q Consensus 731 ~~~e~~~i~~~l~~L~~rW~~L~~~~~~r~~~Le~ 765 (849)
++.....+..++..+......+..........+..
T Consensus 644 ~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~ 678 (880)
T PRK02224 644 DEARIEEAREDKERAEEYLEQVEEKLDELREERDD 678 (880)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555554444443333333
No 25
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=58.54 E-value=2.3e+02 Score=29.28 Aligned_cols=87 Identities=17% Similarity=0.194 Sum_probs=62.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHH
Q psy4475 522 SDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELES 601 (849)
Q Consensus 522 ~~~~I~~~l~~L~~~W~~L~~~~~~R~~~Le~a~~~~~~f~~~l~~l~~WL~~~e~~l~~~~~v~~~~~ql~~~~~~l~~ 601 (849)
....+...+..+...-+.++..+......+++.-.+-.++...++++..-+...+..++. +.+...+.++...+..
T Consensus 25 ~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~----v~~~~e~~aL~~E~~~ 100 (239)
T COG1579 25 RIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSA----VKDERELRALNIEIQI 100 (239)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHH
Confidence 344677788888888888888888888888887777778999999999999999988844 3345556655555555
Q ss_pred HHhhHHhhhhh
Q psy4475 602 LLGTVESEKPK 612 (849)
Q Consensus 602 ~~~~v~~l~~~ 612 (849)
.+....++...
T Consensus 101 ak~r~~~le~e 111 (239)
T COG1579 101 AKERINSLEDE 111 (239)
T ss_pred HHHHHHHHHHH
Confidence 55555444333
No 26
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=53.88 E-value=4.2e+02 Score=30.99 Aligned_cols=90 Identities=10% Similarity=0.179 Sum_probs=46.9
Q ss_pred HhcCCCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHhHhhhcCCChHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q psy4475 687 IQDRTLPPQTLIQFIQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSF------TEQMQQIEMKLNERK 760 (849)
Q Consensus 687 l~~~~~~~~~l~~~lq~Lq~Ei~~~~~~~~~l~~~g~~L~~~~~~~~e~~~i~~~l~~L------~~rW~~L~~~~~~r~ 760 (849)
+....+.|.+. +.|..-..-+.......+.+......|.....++.-...|...+..| +.++..+...+.+-.
T Consensus 197 le~~~l~~gE~-e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~ 275 (557)
T COG0497 197 LEELNLQPGED-EELEEERKRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLSELAELLEEAL 275 (557)
T ss_pred HHhcCCCCchH-HHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Confidence 33445555554 55554444444444444444333333331110122233444444444 567777777777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4475 761 KEVTGCDDAWKHFLSLH 777 (849)
Q Consensus 761 ~~Le~~l~~~~~f~~~~ 777 (849)
-.|+++...++.|...+
T Consensus 276 ~~l~ea~~el~~~~~~l 292 (557)
T COG0497 276 YELEEASEELRAYLDEL 292 (557)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 77777777677666543
No 27
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.32 E-value=6.8e+02 Score=33.19 Aligned_cols=46 Identities=9% Similarity=0.013 Sum_probs=32.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHhhhhhhhccCCCC
Q psy4475 119 AVKNEMKALNMKMHWIDLLNKLEHEKNRLGAAIQAGEAATACISRPSS 166 (849)
Q Consensus 119 ~i~~~l~~l~~~~~w~~l~~~l~~~~~~le~~~~~~~~~~~~~~~~~~ 166 (849)
..++.|..+ ...+......+.....++......+..+...+.....
T Consensus 423 ~~q~~L~ei--~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~ 468 (1311)
T TIGR00606 423 LKQEQADEI--RDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEG 468 (1311)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 477777777 6677777777777777777777777776666665443
No 28
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=50.67 E-value=4.5e+02 Score=30.34 Aligned_cols=47 Identities=11% Similarity=0.057 Sum_probs=32.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 522 SDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSER 570 (849)
Q Consensus 522 ~~~~I~~~l~~L~~~W~~L~~~~~~R~~~Le~a~~~~~~f~~~l~~l~~ 570 (849)
.-......+..++..|+..+..+-.+...+.+.. |..+...++.+..
T Consensus 243 ~v~eW~~~l~~l~~~~d~~~~~~~~~lr~~~E~~--~~ec~~~ve~~k~ 289 (473)
T PF14643_consen 243 KVEEWYASLNALNEQIDEYHQQCMEKLRALYEKI--CQECLALVEKLKQ 289 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 3455667788899999999988888887777665 3344444444443
No 29
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=48.53 E-value=3.7e+02 Score=28.82 Aligned_cols=18 Identities=6% Similarity=0.279 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy4475 523 DQLIEDQIERINDQWNTL 540 (849)
Q Consensus 523 ~~~I~~~l~~L~~~W~~L 540 (849)
...+...+..++.+|...
T Consensus 77 ~~~l~~e~~~~r~k~e~e 94 (312)
T PF00038_consen 77 IDNLKEELEDLRRKYEEE 94 (312)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 344555555555555544
No 30
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=47.62 E-value=5.5e+02 Score=30.45 Aligned_cols=71 Identities=14% Similarity=0.069 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchHHHHH
Q psy4475 735 RALIQSTILSFTEQMQQIEMKLNER---KKEVTGCDDAWKHFLSLHAEVMKWVSEKRTFLSEPYDSNNLSDLRV 805 (849)
Q Consensus 735 ~~~i~~~l~~L~~rW~~L~~~~~~r---~~~Le~~l~~~~~f~~~~~el~~Wl~~~e~~~~~~~~~~~l~~~~~ 805 (849)
-..|...+..+..|+..|.....+- ...++..+....+|......+..=+...+.+...-.+..++..+..
T Consensus 471 m~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~~f~~Ae~lF~~~~Y~~al~~~~~ 544 (569)
T PRK04778 471 MEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQYANRYRSDNEEVAEALNEAERLFREYDYKAALEIIAT 544 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 3456666777777776666555543 3445555555566777777777777777654433333333333333
No 31
>KOG0976|consensus
Probab=47.45 E-value=5.9e+02 Score=30.80 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=31.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 521 ESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLE 562 (849)
Q Consensus 521 ~~~~~I~~~l~~L~~~W~~L~~~~~~R~~~Le~a~~~~~~f~ 562 (849)
.+...|++....+...-..|....+.|..+++........|.
T Consensus 365 ~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e 406 (1265)
T KOG0976|consen 365 MDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLE 406 (1265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 456678888888888888888888888888887665544443
No 32
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=46.00 E-value=6.3e+02 Score=30.67 Aligned_cols=84 Identities=11% Similarity=0.085 Sum_probs=45.2
Q ss_pred HHHHHhhHHhhhhhHHHHHhhhhHHHHHHhhcchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 599 LESLLGTVESEKPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEEL---NSKLEEKGKEVQKAKAMRAAYLTDVEK 675 (849)
Q Consensus 599 l~~~~~~v~~l~~~~~~i~~~~~~l~~~~~~~~~d~~~i~~~l~~l~~~w---~~~~~~R~~~Le~a~~~~~~f~~d~~~ 675 (849)
++-++.+++-|-...+.+...|... .|.-...+..+-..|..+| ...+..=+..|-+..-.. -|..-..+
T Consensus 208 m~PLraSLdfLP~Ri~~F~~ra~~~------fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~-vFr~l~~q 280 (683)
T PF08580_consen 208 MQPLRASLDFLPMRIEEFQSRAESI------FPSACEELEDRYERLEKKWKKLEKEAESLKKELIEDRWNI-VFRNLGRQ 280 (683)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHH
Confidence 3334444433333455555555431 1444566666677777777 333444444444433222 46666777
Q ss_pred HHHHHHHHHHHHhc
Q psy4475 676 IGTWLQDAEAKIQD 689 (849)
Q Consensus 676 l~~WL~e~E~~l~~ 689 (849)
+..=++..|..+..
T Consensus 281 ~~~m~esver~~~k 294 (683)
T PF08580_consen 281 AQKMCESVERSLSK 294 (683)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776643
No 33
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=43.16 E-value=3.7e+02 Score=27.23 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=17.5
Q ss_pred CchHHHHHHHHHHHHHHHHhhHhhHhhhhhhHHHHh
Q psy4475 798 NNLSDLRVKLNSYTELTSFVNKHTRKVKDLSKNTQE 833 (849)
Q Consensus 798 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~ 833 (849)
..+..+..++...........+......++...|..
T Consensus 165 ~~~er~e~ki~~~ea~a~a~~el~~~~~~~e~~l~~ 200 (221)
T PF04012_consen 165 DSFERMEEKIEEMEARAEASAELADSDQDLEAELEE 200 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHH
Confidence 344455555555555555555444333334555555
No 34
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=41.92 E-value=5.6e+02 Score=28.94 Aligned_cols=45 Identities=13% Similarity=0.196 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 738 IQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMK 782 (849)
Q Consensus 738 i~~~l~~L~~rW~~L~~~~~~r~~~Le~~l~~~~~f~~~~~el~~ 782 (849)
.-.....+..+|......+..+...+.+-...|..|...|+.+..
T Consensus 309 yl~~~~~~~~~~~~~~~~i~~~~~~l~~L~~~Y~~F~~aY~~LL~ 353 (412)
T PF04108_consen 309 YLAAFHDFEERWEEEKESIQAYIDELEQLCEFYEGFLSAYDSLLL 353 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888888888888888888878888888877654
No 35
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=41.04 E-value=9.6e+02 Score=31.43 Aligned_cols=124 Identities=11% Similarity=0.127 Sum_probs=65.3
Q ss_pred HHHHhHHHHHHHH--HhhH--HHHHHHHHHHHHHHHHHHhhc--cccccccCCCHHHHHHhhhhhHHHHHhhhhhHHHHH
Q psy4475 26 GKVKSLLADREDQ--YKDH--RVYKEACDELLTWLTRARDKI--PSMKQKSLSDKLAIENIVAPLESLLNKKAQGELLVE 99 (849)
Q Consensus 26 ~~~~~~~~~r~~~--lq~~--q~f~~~~~~l~~Wl~~~~~~l--~~~~~~~~~~~~~~e~~l~~~q~l~~~~~~~~~~~~ 99 (849)
+-++.|+...-.- .... -.......++..|+.+...-. ....+ .-..+......+..+...+..--..+.
T Consensus 198 d~iK~mIi~i~~e~~~~~~~~~~~~~~~~~i~~W~~~~~~~~~~~~~r~----~~~~l~~~~~~l~~~~~~L~~l~~~l~ 273 (1201)
T PF12128_consen 198 DFIKNMIIAILEEEIADGVSPPKSRLKKNDIDDWLRDIRASQGFEKVRP----EFDKLQQQYRQLQALEQQLCHLHAELN 273 (1201)
T ss_pred HHHHHHHHHHHHhhccccccchhhhcchhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777766433 0011 233355678999999887542 12111 011133344444444444443233333
Q ss_pred HHhhhhHHHhhcCCccChHHHHHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHHhhh
Q psy4475 100 HMQTTGEVVLASTSPDGQTAVKNEMKALNMKMHWIDLLNKLEHEKNRLGAAIQAGEA 156 (849)
Q Consensus 100 ~l~~~ge~~~~~~s~~~~~~i~~~l~~l~~~~~w~~l~~~l~~~~~~le~~~~~~~~ 156 (849)
......+..+... .....-+..++..+ ...|+....++..+.+.+.+.+..+++
T Consensus 274 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l--~~~~~e~~~~~~~~~~~~~~~l~~~~~ 327 (1201)
T PF12128_consen 274 ADEQQLEQEQPEL-KEELNELNEELEKL--EDEIKELRDELNKELSALNADLARIKS 327 (1201)
T ss_pred HHHHHHHHhHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333221 11223467777777 777888888887777777776666554
No 36
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=39.36 E-value=2.3e+02 Score=24.76 Aligned_cols=56 Identities=20% Similarity=0.333 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4475 522 SDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQ 581 (849)
Q Consensus 522 ~~~~I~~~l~~L~~~W~~L~~~~~~R~~~Le~a~~~~~~f~~~l~~l~~WL~~~e~~l~~ 581 (849)
....|...+..++.++..|.+.+ ++++..-.+...++..+..+..|....|.++..
T Consensus 43 ~~~~l~~~~~~l~~k~~~l~~~l----~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 43 IAAGLEKNLEDLNQKYEELQPYL----QQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34557777788888887776655 333333334456888889999999998887754
No 37
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=39.16 E-value=3.9e+02 Score=26.31 Aligned_cols=21 Identities=10% Similarity=0.357 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4475 667 AAYLTDVEKIGTWLQDAEAKI 687 (849)
Q Consensus 667 ~~f~~d~~~l~~WL~e~E~~l 687 (849)
..+...++++..++.+.+..+
T Consensus 91 ~~l~~el~~l~~~~~~~~~~l 111 (191)
T PF04156_consen 91 QQLQEELDQLQERIQELESEL 111 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554444
No 38
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.48 E-value=1.1e+03 Score=31.30 Aligned_cols=24 Identities=8% Similarity=0.064 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Q psy4475 43 RVYKEACDELLTWLTRARDKIPSM 66 (849)
Q Consensus 43 q~f~~~~~~l~~Wl~~~~~~l~~~ 66 (849)
..|...+..+..++.+.+..+...
T Consensus 308 ~~f~~~~~e~~~~~~~le~e~~~l 331 (1311)
T TIGR00606 308 HNHQRTVREKERELVDCQRELEKL 331 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455565666666666666665554
No 39
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=33.33 E-value=3.7e+02 Score=29.70 Aligned_cols=128 Identities=12% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHhhhccccCCcccHHHHHHHHHHHhHHHHHHHHHHHHHhcccCCc--cChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 472 ITETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQ--ESDQLIEDQIERINDQWNTLVGDLDTRRE 549 (849)
Q Consensus 472 l~e~~~~~~~~~~~~~~ve~~~~k~~~~~q~el~~v~~~g~~L~~~~~~--~~~~~I~~~l~~L~~~W~~L~~~~~~R~~ 549 (849)
+.........+....+.+...+.+........++.|..+-+.|-+.-.+ ..-...+.++.+++.+|+.....+..|..
T Consensus 222 leqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~ 301 (359)
T PF10498_consen 222 LEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTR 301 (359)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHhhH
Q psy4475 550 KLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTV 606 (849)
Q Consensus 550 ~Le~a~~~~~~f~~~l~~l~~WL~~~e~~l~~~~~v~~~~~ql~~~~~~l~~~~~~v 606 (849)
.|...... ++.+..=|.+....++..-|++.-+..+..++.+|..+.-.|
T Consensus 302 ~L~~Isee-------Le~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrI 351 (359)
T PF10498_consen 302 ELAEISEE-------LEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRI 351 (359)
T ss_pred HHHHHHHH-------HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhh
No 40
>KOG4240|consensus
Probab=32.95 E-value=1.1e+03 Score=29.76 Aligned_cols=255 Identities=14% Similarity=0.140 Sum_probs=130.1
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc---HHHHHHHH
Q psy4475 520 QESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHS---LAVLTQNK 596 (849)
Q Consensus 520 ~~~~~~I~~~l~~L~~~W~~L~~~~~~R~~~Le~a~~~~~~f~~~l~~l~~WL~~~e~~l~~~~~v~~~---~~ql~~~~ 596 (849)
.+..+.|+..+..+...=..+......+..++..+.. ...+....+.+..|+++-...+...-....+ ..+++
T Consensus 240 ~~mve~vQ~~le~l~~~~q~~El~~d~~s~rl~~a~~-l~~l~~~k~qv~~~~rng~smLt~~~~~~s~~~et~~Lq--- 315 (1025)
T KOG4240|consen 240 RDMVEAVQGLLESLEEEVQRLELPADVRSTRLEQASQ-LAKLLEDKNQVLALIRNGLSMLTQLRVLASDLSETSQLQ--- 315 (1025)
T ss_pred hHHHHHHHHHHHhHHHHHHhhcchhhchhhHHHHHHH-HHHHHHHHHHHHHHHhcchhhhhhhccCCCcCCccHHHH---
Confidence 3778889999999999888888888888888887775 4568888899999999888776553221111 11111
Q ss_pred HHHHHHHhh--HHhhhhhHHHHHhhhhHHHHHHhhcchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 597 SELESLLGT--VESEKPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEEL---NSKLEEKGKEVQKAKAMRAAYLT 671 (849)
Q Consensus 597 ~~l~~~~~~--v~~l~~~~~~i~~~~~~l~~~~~~~~~d~~~i~~~l~~l~~~w---~~~~~~R~~~Le~a~~~~~~f~~ 671 (849)
..+...+.. +..+......... +- ..+.+.+.+......++..+...| ...+..|-..+..+. .|+.
T Consensus 316 ~~~~~f~d~~e~k~~~~q~~~~~~-a~---~~~~~~h~~~~e~~~~le~~~t~~qql~~~~e~r~~~vaa~~----~~~~ 387 (1025)
T KOG4240|consen 316 REHRQFQDAQEVKTLLSQLQVQQK-AF---DLLQNKHQNRDESLEKLETLQTKWQQLMTAMEDRLKLVAAAV----AFYK 387 (1025)
T ss_pred hhHhhhhhHHHHHHHHHHHHHHHH-HH---HHHhchhhhHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHH----HHhc
Confidence 111111111 1111111110000 00 011122466778888899999999 455566666665544 6777
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH--HHHhhHHHHHHHHHHHhHhhhcCCChHHHHHHHHH-HHHHHHH
Q psy4475 672 DVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQLEG--ELIDMKDKLAQMTRTGNEISQHTESNEERALIQST-ILSFTEQ 748 (849)
Q Consensus 672 d~~~l~~WL~e~E~~l~~~~~~~~~l~~~lq~Lq~--Ei~~~~~~~~~l~~~g~~L~~~~~~~~e~~~i~~~-l~~L~~r 748 (849)
+...+..=|+.-+..... +...+........+.. =+..|......+...+......+ ... ...|.++ +......
T Consensus 388 t~e~v~~iLe~le~e~E~-~~g~al~~~~f~~l~a~~l~skh~~~~~~~l~~CTe~r~~a-d~~-~~ei~r~~i~~~~k~ 464 (1025)
T KOG4240|consen 388 TSEQVEPILEDLESEYER-SGGCALLGAQFRSLHAALLISKHRLAKELFLKACTEARRNA-DVF-LREIKRNRILDREKQ 464 (1025)
T ss_pred CHHHHHHHHHhcccccch-hhhhhhchhHHHHHhhhhhhhhhhhhhhhhhhhHHHHHhcC-cHH-HHHHHHHhhhhHHHH
Confidence 777665444433322211 0000111112222221 13344555555555555544443 222 2222222 2211111
Q ss_pred HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4475 749 MQQ-----------IEMKLNERKKEVTGCDDAWKHFLSLHAEVMKWVSEKRTF 790 (849)
Q Consensus 749 W~~-----------L~~~~~~r~~~Le~~l~~~~~f~~~~~el~~Wl~~~e~~ 790 (849)
-+- ....+..+.+.++.+- .+--|....++...||..--.+
T Consensus 465 lk~~r~~~r~re~~~l~~~l~a~q~~d~cq-~~~~~e~~~ke~e~~L~~~~ef 516 (1025)
T KOG4240|consen 465 LKLHRNLLRQRENCDLESWLLAKQALDKCQ-SYVVAEASAKEAEEFLHTEGEF 516 (1025)
T ss_pred HHHHHHHHhccccCcHHHHHHHHhhhHhhh-HHHHHHHHHHHHHHHHHhCcch
Confidence 111 1222233333344333 3556778899999999876643
No 41
>KOG3958|consensus
Probab=32.45 E-value=6.3e+02 Score=26.73 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=49.8
Q ss_pred HHhhHHHHHHHHHHHhHhhh-cCCChHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 708 LIDMKDKLAQMTRTGNEISQ-HTESNEERALIQSTIL---SFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMKW 783 (849)
Q Consensus 708 i~~~~~~~~~l~~~g~~L~~-~~~~~~e~~~i~~~l~---~L~~rW~~L~~~~~~r~~~Le~~l~~~~~f~~~~~el~~W 783 (849)
++..+.++.++......|.+ +..+..++ ..+.++. ++-+||..++....+-.+++...- .++.+-..+..+..-
T Consensus 245 ld~vEqRL~s~lgK~~~IaEk~~~s~~Da-~~d~KV~elye~~qrw~pi~stLP~~V~rl~al~-~LHeqa~~Fa~~lth 322 (371)
T KOG3958|consen 245 LDQVEQRLQSVLGKVNEIAEKHKASVEDA-DTDSKVHELYETIQRWSPIASTLPELVQRLVALK-QLHEQAMQFAQLLTH 322 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccc-hhhhhHHHHHHHHHhhhhHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 45556666777777777763 33233332 4454444 456799999999888777765443 355555556666666
Q ss_pred HHHHHhhh
Q psy4475 784 VSEKRTFL 791 (849)
Q Consensus 784 l~~~e~~~ 791 (849)
|..++..+
T Consensus 323 l~t~q~~i 330 (371)
T KOG3958|consen 323 LDTTQQMI 330 (371)
T ss_pred HHHHHHHH
Confidence 66666443
No 42
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=30.62 E-value=5.5e+02 Score=25.48 Aligned_cols=86 Identities=15% Similarity=0.292 Sum_probs=43.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHhHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Q psy4475 703 QLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKL-----------NERKKEVTGCDDAWK 771 (849)
Q Consensus 703 ~Lq~Ei~~~~~~~~~l~~~g~~L~~~~~~~~e~~~i~~~l~~L~~rW~~L~~~~-----------~~r~~~Le~~l~~~~ 771 (849)
.+..++......+..+...-...........++..+-.++..|...-..|...+ ......+..+.....
T Consensus 73 ~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~an 152 (188)
T PF03962_consen 73 KLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAAN 152 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444333222122333444444444444444443333 233444445555667
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4475 772 HFLSLHAEVMKWVSEKR 788 (849)
Q Consensus 772 ~f~~~~~el~~Wl~~~e 788 (849)
++...+--+..|+..+-
T Consensus 153 rwTDNI~~l~~~~~~k~ 169 (188)
T PF03962_consen 153 RWTDNIFSLKSYLKKKF 169 (188)
T ss_pred HHHhhHHHHHHHHHHhc
Confidence 78888888888988764
No 43
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=30.25 E-value=6.4e+02 Score=26.16 Aligned_cols=28 Identities=14% Similarity=0.349 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 529 QIERINDQWNTLVGDLDTRREKLTELAE 556 (849)
Q Consensus 529 ~l~~L~~~W~~L~~~~~~R~~~Le~a~~ 556 (849)
.+..+..+|.........|...+.+...
T Consensus 25 ~~~~~~~~~~~~~~~sQ~~id~~~~e~~ 52 (251)
T PF11932_consen 25 QAQQVQQQWVQAAQQSQKRIDQWDDEKQ 52 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666555554443
No 44
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=28.69 E-value=9e+02 Score=27.39 Aligned_cols=114 Identities=15% Similarity=0.223 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHhHhhh----cCCCh-------HHH
Q psy4475 667 AAYLTDVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQLEGELIDMKDKLAQMTRTGNEISQ----HTESN-------EER 735 (849)
Q Consensus 667 ~~f~~d~~~l~~WL~e~E~~l~~~~~~~~~l~~~lq~Lq~Ei~~~~~~~~~l~~~g~~L~~----~~~~~-------~e~ 735 (849)
..+..|...+.+.+..++....... -++..|+.||...++.++.|...-..|-. ...++ .++
T Consensus 305 r~l~~D~nk~~~~~~~mk~K~~~~~-------g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Er 377 (622)
T COG5185 305 RALKSDSNKYENYVNAMKQKSQEWP-------GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQER 377 (622)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhcc-------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3555666667666666555554432 23344555555555555555554443322 22122 245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 736 ALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMKWVSEK 787 (849)
Q Consensus 736 ~~i~~~l~~L~~rW~~L~~~~~~r~~~Le~~l~~~~~f~~~~~el~~Wl~~~ 787 (849)
..+...|+-++-.=..|..-+.++....+.....+......++.+..-+.-.
T Consensus 378 e~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~ 429 (622)
T COG5185 378 EKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRS 429 (622)
T ss_pred HHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5666777777777788888888887777776665555555555555444433
No 45
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=27.84 E-value=7.2e+02 Score=25.98 Aligned_cols=68 Identities=10% Similarity=0.247 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc----hHHHHHHHHHHHHHHhhHHHHHHHHHHHhHhhhc
Q psy4475 660 QKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPP----QTLIQFIQQLEGELIDMKDKLAQMTRTGNEISQH 728 (849)
Q Consensus 660 e~a~~~~~~f~~d~~~l~~WL~e~E~~l~~~~~~~----~~l~~~lq~Lq~Ei~~~~~~~~~l~~~g~~L~~~ 728 (849)
+.......+|...+.++..||.++..........- ..+ +.+..-..+|......+......|..++..
T Consensus 181 ~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l-~~~~~k~~~l~~~~~~~~~~L~~a~~~L~~ 252 (264)
T PF06008_consen 181 EAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNL-EDLEKKKQELSEQQNEVSETLKEAEDLLDQ 252 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556899999999999999988765432110 011 233344456666666666666666665543
No 46
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=26.50 E-value=4e+02 Score=22.63 Aligned_cols=82 Identities=21% Similarity=0.339 Sum_probs=43.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCchHHHHHHHHH
Q psy4475 291 IESYKADVNELDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVEHGQGVLCPVKANTLKD 370 (849)
Q Consensus 291 ~~~~~~~~~~l~~~l~~l~~l~~~L~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~kl~~ 370 (849)
...+.|.+..++..+.++..-+..|.... .....-|..+..-....+ ..+..++..|+..
T Consensus 9 ~~~l~P~l~~~~~~l~el~~sQ~~L~~~i-----------------~~~~~~L~~~~~~~~~~~---~~~~~~y~~KL~~ 68 (92)
T PF14712_consen 9 LSLLEPDLDRLDQQLQELRQSQEELLQQI-----------------DRLNEKLKELNEVEQINE---PFDLDPYVKKLVN 68 (92)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHhhhhhh---HHHhhHHHHHHHH
Confidence 44577887888887777655555444432 122222222222110000 0122236777888
Q ss_pred HHHHHHhcCCchhHHhhHhHHHH
Q psy4475 371 ISNTLENSLQTPLEQLQDKAGQV 393 (849)
Q Consensus 371 l~~e~~~~~~~~l~~l~~~~~~l 393 (849)
+...|.. -..++..++.++..+
T Consensus 69 ikkrm~~-l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 69 IKKRMSN-LHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhh
Confidence 8888776 566666666665544
No 47
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=25.73 E-value=8.8e+02 Score=26.30 Aligned_cols=221 Identities=14% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHHhcCCchhHHhhHhHHHHHHHhchhhHHHhHHH
Q psy4475 329 IESYKADVNDLDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQ 408 (849)
Q Consensus 329 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~kl~~l~~e~~~~~~~~l~~l~~~~~~l~~~~~~~d~~~~~~q 408 (849)
++.|...|.++.+++..-..-+..++.......++.....-.-..++...-...+..++..+......
T Consensus 70 Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~------------ 137 (325)
T PF08317_consen 70 LELYQFSCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKK------------ 137 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH------------
Q ss_pred HHHHHHHhhhcccchHHHHHhHhhhccHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCccc
Q psy4475 409 KLLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSAT 488 (849)
Q Consensus 409 ~llee~~~~~~~~~~~~~~~l~~~l~~~~~i~e~~~~~~~~~l~~~l~~~~qf~~~~~el~~wl~e~~~~~~~~~~~~~~ 488 (849)
.|-.|+-...+.....|.+.+ .-+..+...+..++.....++..
T Consensus 138 ----~WYeWR~~ll~gl~~~L~~~~-------------------------~~L~~D~~~L~~~~~~l~~~~~~------- 181 (325)
T PF08317_consen 138 ----MWYEWRMQLLEGLKEGLEENL-------------------------ELLQEDYAKLDKQLEQLDELLPK------- 181 (325)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHH-------
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcccCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 489 VQEKIDKYDKENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSS 568 (849)
Q Consensus 489 ve~~~~k~~~~~q~el~~v~~~g~~L~~~~~~~~~~~I~~~l~~L~~~W~~L~~~~~~R~~~Le~a~~~~~~f~~~l~~l 568 (849)
+..+......++..+...... +..+++..=..++..|..+...-......+.+...++...............++
T Consensus 182 ----l~~~~~~L~~e~~~Lk~~~~e-~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l 256 (325)
T PF08317_consen 182 ----LRERKAELEEELENLKQLVEE-IESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQEL 256 (325)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHh
Q psy4475 569 ERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLG 604 (849)
Q Consensus 569 ~~WL~~~e~~l~~~~~v~~~~~ql~~~~~~l~~~~~ 604 (849)
..=+.+++..+....... ...+..++..+..++.
T Consensus 257 ~~eI~e~~~~~~~~r~~t--~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 257 LAEIAEAEKIREECRGWT--RSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHH
No 48
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=25.61 E-value=5.7e+02 Score=24.07 Aligned_cols=82 Identities=22% Similarity=0.265 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 697 LIQFIQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSL 776 (849)
Q Consensus 697 l~~~lq~Lq~Ei~~~~~~~~~l~~~g~~L~~~~~~~~e~~~i~~~l~~L~~rW~~L~~~~~~r~~~Le~~l~~~~~f~~~ 776 (849)
+..+++.+..+|+.....+..+......--... .....+.+++..|..........+..-..+|.++-.....|-..
T Consensus 40 L~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~---~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRk 116 (143)
T PF12718_consen 40 LQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK---SNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERK 116 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 445666777777777777777766666544432 12335677777777766666666666666666665555556555
Q ss_pred HHHHH
Q psy4475 777 HAEVM 781 (849)
Q Consensus 777 ~~el~ 781 (849)
+..|.
T Consensus 117 v~~le 121 (143)
T PF12718_consen 117 VKALE 121 (143)
T ss_pred HHHHH
Confidence 55543
No 49
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=24.39 E-value=3.1e+02 Score=26.36 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcccCCccChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
Q psy4475 504 IDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNT--LVGDLDTRREKLTELAEQWEQLEKLMS-----------SSER 570 (849)
Q Consensus 504 l~~v~~~g~~L~~~~~~~~~~~I~~~l~~L~~~W~~--L~~~~~~R~~~Le~a~~~~~~f~~~l~-----------~l~~ 570 (849)
+..++..-..............++.||+-|-++|++ |..-+.++...|-.++.. +.|..+.+ ++..
T Consensus 48 ~~~L~~v~~~~~~~~~kr~~~D~~KRL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~-~d~~~A~~Ih~~L~t~h~~E~~~ 126 (157)
T PF07304_consen 48 LRELQRVLEACPPSIKKRVVDDIEKRLNILFDHLNNGKLSKPVVDKLHQLAQALQA-RDYDAADEIHVDLMTDHVDECGN 126 (157)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHT-S-HHHHHHHHHHHHHHHH-T-HHHHHHHHHHHHHSSHHHHTT
T ss_pred HHHHHHHHHHcccccchhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhccHHHhhh
Q ss_pred HHHHHHHHhh
Q psy4475 571 TLKGVETSVE 580 (849)
Q Consensus 571 WL~~~e~~l~ 580 (849)
||.....++.
T Consensus 127 WmvGVKRLI~ 136 (157)
T PF07304_consen 127 WMVGVKRLIA 136 (157)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
No 50
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=22.69 E-value=8.9e+02 Score=25.28 Aligned_cols=22 Identities=9% Similarity=0.220 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy4475 768 DAWKHFLSLHAEVMKWVSEKRT 789 (849)
Q Consensus 768 ~~~~~f~~~~~el~~Wl~~~e~ 789 (849)
..+..|...+.++..||.+...
T Consensus 185 ~~L~~~~~kL~Dl~~~l~eA~~ 206 (264)
T PF06008_consen 185 DDLNDYNAKLQDLRDLLNEAQN 206 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455888899999999988774
No 51
>PRK09039 hypothetical protein; Validated
Probab=21.87 E-value=1.1e+03 Score=25.92 Aligned_cols=37 Identities=14% Similarity=0.327 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4475 635 QKRITALELLSEELNSKLEEKGKEVQKAKAMRAAYLTDVE 674 (849)
Q Consensus 635 ~~i~~~l~~l~~~w~~~~~~R~~~Le~a~~~~~~f~~d~~ 674 (849)
.....+++.+..+....+..+...|..-. .+|+..+.
T Consensus 168 ~~~~~~i~~L~~~L~~a~~~~~~~l~~~~---~~~~~~l~ 204 (343)
T PRK09039 168 RESQAKIADLGRRLNVALAQRVQELNRYR---SEFFGRLR 204 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHH
Confidence 45556666666666555555566665533 35554443
No 52
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=20.78 E-value=1.2e+02 Score=20.11 Aligned_cols=21 Identities=24% Similarity=0.621 Sum_probs=16.8
Q ss_pred cChHHHHHHHHHHHHHHHHHH
Q psy4475 521 ESDQLIEDQIERINDQWNTLV 541 (849)
Q Consensus 521 ~~~~~I~~~l~~L~~~W~~L~ 541 (849)
.++..|+++.+-||+.|..+.
T Consensus 6 sNr~Ki~e~t~iLN~eWk~lR 26 (30)
T PF11616_consen 6 SNRQKIQERTDILNEEWKKLR 26 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHH--
T ss_pred hhHHHHHHHHHHHHHHHHHhc
Confidence 367889999999999999764
Done!