RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4475
(849 letters)
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 52.8 bits (127), Expect = 8e-07
Identities = 53/266 (19%), Positives = 114/266 (42%), Gaps = 17/266 (6%)
Query: 135 DLLNKLEHEKNRLGAAIQAGEAATACISRPSSPLESAHPPVPDREIAIRLRLEDQIEQVE 194
L ++L +NRL Q A+ I +E ++E +L++++E++E
Sbjct: 692 SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL-----EQEEE---KLKERLEELE 743
Query: 195 SKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCKIKAESAQAEIAKMQDLK 254
LS L + +E + E+ A I++ + + E+ ++A + + I ++Q
Sbjct: 744 EDLSSLEQE---IENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAEL 800
Query: 255 GVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKADVNELDKQLDAISLIEGT 314
+ ++ +E +L E+ +N+ +K+ +K I+ + +L +Q I IE
Sbjct: 801 SKL--EEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ---IKSIEKE 855
Query: 315 INQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNT 374
I GKK+ ++ +E +A + DL+ +L + K+ D +E L K L+
Sbjct: 856 IENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLREL-ERKIEELEAQIEK 914
Query: 375 LENSLQTPLEQLQDKAGQVKALLSNL 400
L +L+ ++ +
Sbjct: 915 KRKRLSELKAKLEALEEELSEIEDPK 940
Score = 42.4 bits (100), Expect = 0.001
Identities = 44/257 (17%), Positives = 108/257 (42%), Gaps = 9/257 (3%)
Query: 489 VQEKIDKYDKENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRR 548
++E+++ +E S L + + + + SD +I I + L + + +
Sbjct: 679 LRERLEGLKRELSSLQSELRRIENRLDELSQELSDA--SRKIGEIEKEIEQLEQEEEKLK 736
Query: 549 EKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTV-E 607
E+L EL E LE+ + + + LK +E +E+ + +H L + L L +
Sbjct: 737 ERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKL------EEALNDLEARLSH 790
Query: 608 SEKPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQKAKAMRA 667
S P++ + V ++ ++++++ L L E L +++E ++ K
Sbjct: 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK 850
Query: 668 AYLTDVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQLEGELIDMKDKLAQMTRTGNEISQ 727
+ ++E + ++ E ++++ + L + L+ E +++ +L ++ R E+
Sbjct: 851 SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
Query: 728 HTESNEERALIQSTILS 744
E +R L
Sbjct: 911 QIEKKRKRLSELKAKLE 927
Score = 36.2 bits (84), Expect = 0.079
Identities = 58/276 (21%), Positives = 112/276 (40%), Gaps = 44/276 (15%)
Query: 177 DREIAIRLRLEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPC 236
+R++A LE+++E++ ++S+L + LE E+L E+ I D + + E+
Sbjct: 243 ERQLA---SLEEELEKLTEEISELEKR---LEEIEQLLEELNKKIKD----LGEEEQLRV 292
Query: 237 KIKAESAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKA 296
K K +AEIA LE +AE K+ + E
Sbjct: 293 KEKIGELEAEIAS----------------LERSIAE----------KERELEDAEERLAK 326
Query: 297 DVNELDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDS--VE 354
E+DK L I +E I + ++D + K ++ DL +L+ + K+ E
Sbjct: 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386
Query: 355 HGQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLDEI 414
K + + LQ L++L ++ + A ++ ++A+ + ++ ++
Sbjct: 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK 446
Query: 415 NL------WKNSQSDEDLAHLADSIKPLDEVVERIE 444
L WK Q DL+ + L E +R+E
Sbjct: 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE 482
Score = 36.2 bits (84), Expect = 0.099
Identities = 51/278 (18%), Positives = 113/278 (40%), Gaps = 28/278 (10%)
Query: 528 DQIERINDQWNTLVGDLDTRREK----LTELAEQWEQLEKLMSSSERTLKGVETSVEQCD 583
Q+ER+ + +EK EL ++ E LE+ + ER L +E +E+
Sbjct: 198 QQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEK-- 255
Query: 584 GVVHSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKKDGLDLQKRITALEL 643
LT+ SELE L +E + L I +++ L ++++I LE
Sbjct: 256 --------LTEEISELEKRLEEIEQL------LEELNKKIKDLGEEEQLRVKEKIGELEA 301
Query: 644 LSEELNSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQ 703
L + EK +E++ A+ A +++K+ +++ E +I++ L + +
Sbjct: 302 EIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAE 361
Query: 704 LEGELIDMKDKLAQMTRTGNEISQHTES--------NEERALIQSTILSFTEQMQQIEMK 755
L+ EL D++ +L ++ + E + E ++ + E++Q++ +
Sbjct: 362 LKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEE 421
Query: 756 LNERKKEVTGCDDAWKHFLSLHAEVMKWVSEKRTFLSE 793
L + + G + + + ++ L +
Sbjct: 422 LADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ 459
Score = 35.4 bits (82), Expect = 0.15
Identities = 50/302 (16%), Positives = 126/302 (41%), Gaps = 34/302 (11%)
Query: 280 AIGKKDSQQKVIESYKADVNELDKQLDAI----SLIEGTINQAIGKKDSQQKVIESYKAD 335
I S+ ++ + + L ++L ++ IE +++ + + I + +
Sbjct: 665 GILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE 724
Query: 336 VNDLDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKA 395
+ L+++ + + ++L+ +E +D+S SL+ +E ++ + +++A
Sbjct: 725 IEQLEQEEEKLKERLEELE--------------EDLS-----SLEQEIENVKSELKELEA 765
Query: 396 LLSNLDAQFVDEQKLLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIE---NNAVPKLK 452
+ L+ ++ L+++ + S + + + L+E V RIE KL
Sbjct: 766 RIEELEEDLHKLEEALNDL---EARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLN 822
Query: 453 SLLLLREQFTTLIMQIVGFITETTARVGEVDG---NSATVQEKIDKYDKENQSEIDMLND 509
L L +E I ++ + ++ ++ N +E++++ +E ++ + L
Sbjct: 823 RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLES 882
Query: 510 VWKEIKPKADQESDQL--IEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSS 567
++K + D+ QL +E +IE + Q L + KL L E+ ++E
Sbjct: 883 RLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE 942
Query: 568 SE 569
E
Sbjct: 943 DE 944
Score = 32.3 bits (74), Expect = 1.2
Identities = 57/345 (16%), Positives = 139/345 (40%), Gaps = 50/345 (14%)
Query: 237 KIKAESAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKA 296
+ KAE QA + + ++ +G L K+ E L + S ++ +E
Sbjct: 207 REKAERYQALLKEKREYEGYELLKEKEALERQ--------KEAIERQLASLEEELEKLTE 258
Query: 297 DVNELDKQLDAISLIEGTINQAIGKKDSQ-----QKVIESYKADVNDLDKQLDAISKKLD 351
+++EL+K+L+ I + +N+ I + ++ I +A++ L+ +I++K
Sbjct: 259 EISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLE---RSIAEKER 315
Query: 352 SVEHGQGVLCPVKANTLKDISNTLEN--SLQTPLEQLQDKAGQVKALLSNLDAQFVDEQK 409
+E + L A +I L L+ +E+ + + ++ + L + D +
Sbjct: 316 ELEDAEERL----AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA 371
Query: 410 LLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLLLLREQFTTLIMQIV 469
L+E++ + E L D + L+++ I N +L L ++ + + +
Sbjct: 372 ELEEVD----KEFAETRDELKDYREKLEKLKREI-NELKRELDRLQEELQRLSEELADLN 426
Query: 470 GFITETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQESDQLIEDQ 529
I A++ E++ +I K + + + L+ +E+ ++++
Sbjct: 427 AAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD---------LKEE 477
Query: 530 IERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKG 574
+R+ +L++L + + E +SE ++G
Sbjct: 478 YDRVEK--------------ELSKLQRELAEAEAQARASEERVRG 508
>gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved
in cytoskeletal structure; family members include
spectrin, alpha-actinin and dystrophin; the spectrin
repeat forms a three helix bundle with the second helix
interrupted by proline in some sequences; the repeats
are independent folding units; tandem repeats are found
in differing numbers and arrange in an antiparallel
manner to form dimers; the repeats are defined by a
characteristic tryptophan (W) residue in helix A and a
leucine (L) at the carboxyl end of helix C and separated
by a linker of 5 residues; two copies of the repeat are
present here.
Length = 213
Score = 49.4 bits (118), Expect = 2e-06
Identities = 40/218 (18%), Positives = 90/218 (41%), Gaps = 15/218 (6%)
Query: 550 KLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESE 609
KL + ++LE +S E L L + + E+L + +
Sbjct: 1 KLQQFLRDADELEAWLSEKEELLSS--------TDYGDDLESVEALLKKHEALEAELAAH 52
Query: 610 KPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQKAKAMRAAY 669
+ +V ++ L +++ D ++Q+R+ L EEL EE+ + +++A +
Sbjct: 53 EERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEA-LDLQQF 111
Query: 670 LTDVEKIGTWLQDAEAKIQDRTLPP-----QTLIQFIQQLEGELIDMKDKLAQMTRTGNE 724
D + + WL++ EA + L + L++ ++LE EL + +L + E
Sbjct: 112 FRDADDLEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEE 171
Query: 725 ISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKE 762
+ + + I+ + E+ +++ ER+K+
Sbjct: 172 LLEE-GHPDADEEIEEKLEELNERWEELLELAEERQKK 208
Score = 43.6 bits (103), Expect = 1e-04
Identities = 33/197 (16%), Positives = 95/197 (48%), Gaps = 10/197 (5%)
Query: 473 TETTARVGEVDGNSATVQEKIDKYD------KENQSEIDMLNDVWKEIKPKADQESDQLI 526
E + + +V+ + K++ ++ ++ LN++ +++ + ++++ I
Sbjct: 19 KEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEE-I 77
Query: 527 EDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVV 586
++++E +N +W L + RR++L E + + E+ L+ E ++ D +
Sbjct: 78 QERLEELNQRWEELRELAEERRQRLEEALDLQQFFRD-ADDLEQWLEEKEAALASED-LG 135
Query: 587 HSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKKDGLD-LQKRITALELLS 645
L + + + + L +E+ +P++ ++ LA +++ D + +++++ L
Sbjct: 136 KDLESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERW 195
Query: 646 EELNSKLEEKGKEVQKA 662
EEL EE+ K++++A
Sbjct: 196 EELLELAEERQKKLEEA 212
Score = 41.7 bits (98), Expect = 6e-04
Identities = 30/170 (17%), Positives = 74/170 (43%), Gaps = 8/170 (4%)
Query: 669 YLTDVEKIGTWLQDAEAKIQDRTLPP-----QTLIQFIQQLEGELIDMKDKLAQMTRTGN 723
+L D +++ WL + E + + L++ + LE EL ++++ + G
Sbjct: 5 FLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGE 64
Query: 724 EISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMKW 783
++ + E + + IQ + ++ +++ ER++ + D + F ++ +W
Sbjct: 65 QLIE--EGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDAD-DLEQW 121
Query: 784 VSEKRTFLSEPYDSNNLSDLRVKLNSYTELTSFVNKHTRKVKDLSKNTQE 833
+ EK L+ +L + L + EL + H ++K L++ +E
Sbjct: 122 LEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLNELAEE 171
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 50.8 bits (122), Expect = 3e-06
Identities = 52/306 (16%), Positives = 131/306 (42%), Gaps = 11/306 (3%)
Query: 493 IDKYDKENQSEIDMLNDVWKEIKPKADQESDQLIE--DQIERINDQWNTLVGDLDTRREK 550
+ + + E+ +L +E++ + ++ ++L E +++E + + L L+ R +
Sbjct: 216 KELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLE 275
Query: 551 LTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEK 610
++EL E+ E+L+K + + + +E + LA L + ELE+ L +ES+
Sbjct: 276 VSELEEEIEELQKELYALANEISRLEQQKQILR---ERLANLERQLEELEAQLEELESKL 332
Query: 611 PKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQKAKAMRAAYL 670
++++ ++ LK++ L+ + LE EEL S+LEE ++++ ++ A
Sbjct: 333 DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
Query: 671 TDVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQLEGELIDMKDKLAQMTRTGNE------ 724
+ + ++ EA+++ + L Q I++L +L + + K Q E
Sbjct: 393 LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEEL 452
Query: 725 ISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMKWV 784
+ E ++ + + + E +L + + + + ++ V +
Sbjct: 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALL 512
Query: 785 SEKRTF 790
+
Sbjct: 513 KNQSGL 518
Score = 48.9 bits (117), Expect = 1e-05
Identities = 53/346 (15%), Positives = 139/346 (40%), Gaps = 44/346 (12%)
Query: 234 KPCKIKAESAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIES 293
K + +AE A+ +L+ E +LA L+ + + + + Q+ ++
Sbjct: 203 KSLERQAEKAERYKELKAELR------------ELELALLVLRLEELREELEELQEELKE 250
Query: 294 YKADVNELDKQLDA----ISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKK 349
+ ++ EL +L + + +++ + + QK + + +++ L++Q + ++
Sbjct: 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER 310
Query: 350 LDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQK 409
L ++E L+++ LE E ++ A +++ L L + +
Sbjct: 311 LANLE-----------RQLEELEAQLEELESKLDELAEELA-ELEEKLEELKEELESLEA 358
Query: 410 LLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLLLLREQFTTLIMQIV 469
L+E+ +L L ++ L+E +E + + + L + L +
Sbjct: 359 ELEELE--------AELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR-- 408
Query: 470 GFITETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQESDQLIEDQ 529
+ R + + +K+++ + + E+ + +E + +E ++L E
Sbjct: 409 --LERLEDRRERLQQEIEELLKKLEEAELK---ELQAELEELEEELEELQEELERLEE-A 462
Query: 530 IERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGV 575
+E + ++ LD +L +L + + LE+L + E +GV
Sbjct: 463 LEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV 508
Score = 44.7 bits (106), Expect = 2e-04
Identities = 57/297 (19%), Positives = 126/297 (42%), Gaps = 40/297 (13%)
Query: 177 DREIAIRLRLEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPC 236
REI LE++IE++E ++ E E L +L+ E+ ++ + L + E+
Sbjct: 676 RREIE---ELEEKIEELEE---KIAELEKAL---AELRKELEELEEELEQLRKELEELSR 726
Query: 237 KIKAESAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKA 296
+I A + + +QL E I +++ + + +++ IE +
Sbjct: 727 QISALRKDLARLEAE---------------VEQLEERIAQLSKELTELEAE---IEELEE 768
Query: 297 DVNELDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVEHG 356
+ E +++L A + + + IE K ++ L + LD + +L +
Sbjct: 769 RLEEAEEELAE----------AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
Query: 357 QGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLDEINL 416
L + + I+ T E L+ EQ+++ + +++L + ++ ++L E+
Sbjct: 819 AANLRERLESLERRIAAT-ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA 877
Query: 417 WKN--SQSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLLLLREQFTTLIMQIVGF 471
N + +E LA L ++ L E + +E+ + L LRE+ L +++ G
Sbjct: 878 LLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934
Score = 39.7 bits (93), Expect = 0.007
Identities = 44/237 (18%), Positives = 117/237 (49%), Gaps = 8/237 (3%)
Query: 184 LRLEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCKIKAE-- 241
LRLE+ E++E +L EAE LE E+ +++ + +++ E++ +++ E
Sbjct: 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY 291
Query: 242 SAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKADVNEL 301
+ EI++++ + + ++ LE QL EL + + K D + + + + EL
Sbjct: 292 ALANEISRLE--QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL 349
Query: 302 DKQLDAISL----IEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVEHGQ 357
++L+++ +E + + + + ++ +E+ ++ V L+ Q+ +++ +++ +E
Sbjct: 350 KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL 409
Query: 358 GVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLDEI 414
L + ++I L+ + L++LQ + +++ L L + ++ L+E+
Sbjct: 410 ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEEL 466
Score = 36.2 bits (84), Expect = 0.097
Identities = 96/598 (16%), Positives = 229/598 (38%), Gaps = 70/598 (11%)
Query: 177 DREIAIRLRLEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITD-WEKKP 235
+ A LE ++E++E +L L A LE + + ++ + + D E+
Sbjct: 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQ 420
Query: 236 CKIKAESAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKV---IE 292
+I+ + E A++++L+ + + + E LE+ EL L ++ ++ ++
Sbjct: 421 QEIEELLKKLEEAELKELQAELEELEEE--LEELQEELERLEEALEELREELEEAEQALD 478
Query: 293 SYKADVNELDKQLDAISLIEG-----------TINQAIGKKDSQQKVIESYKAD------ 335
+ + ++ +L +LD++ ++ + G + E D
Sbjct: 479 AAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAA 538
Query: 336 -------------VNDLDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQT- 381
V +L+ AI+ L E G+ P+ + +I L+
Sbjct: 539 IEAALGGRLQAVVVENLNAAKKAIAF-LKQNELGRVTFLPLDSIKGTEIQGNDREILKNI 597
Query: 382 -----PLEQLQDKAGQVKALLSNLDAQFVDEQKLLDEINLWKNSQSDEDLAHLA-DSIKP 435
+ L +++ LS L + L + + L K + + L D ++P
Sbjct: 598 EGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRP 657
Query: 436 LDEVV---ERIENNAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEK 492
+ + ++ + + + + L E+ L +I E + E+ ++E+
Sbjct: 658 GGVITGGSAKTNSSILERRREIEELEEKIEELEEKI----AELEKALAELRKELEELEEE 713
Query: 493 IDKYDKENQSEIDMLNDVWKEIKPKADQESDQL------IEDQIERINDQWNTLVGDLDT 546
+++ KE + ++ + K++ + + E +QL + ++ + + L L+
Sbjct: 714 LEQLRKELEELSRQISALRKDLA-RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
Query: 547 RREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAV-LTQNKSELESLLGT 605
E+L E + E+LE + + LK + ++++ + L + LESL
Sbjct: 773 AEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR 832
Query: 606 VESEKPKVSQISTLAAPIVKFLKKDGLDLQKRITALEL----LSEELNSKLEEKGKEVQK 661
+ + + ++ L I + L +D L I LE L EL + L E+ +
Sbjct: 833 IAATE---RRLEDLEEQIEE-LSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
Query: 662 AKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTLIQF---IQQLEGELIDMKDKLA 716
+R+ E++ ++ + L Q ++ LE + +++++L+
Sbjct: 889 LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
Score = 30.4 bits (69), Expect = 5.3
Identities = 37/185 (20%), Positives = 85/185 (45%), Gaps = 16/185 (8%)
Query: 185 RLEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCKIKAESAQ 244
LE Q+E++ESKL +L E A L E+ E+ ++ ++ + E + + ES
Sbjct: 320 ELEAQLEELESKLDELAEELAEL---EEKLEELKEELESLEAELE--ELEAELEELESRL 374
Query: 245 AEI-AKMQDLKGVVLQ-KQTEGLLEDQLAELITLINQAIGKKDSQQKVIES--YKADVNE 300
E+ +++ L+ V Q + L +++ L + + +++ Q+ IE K + E
Sbjct: 375 EELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE 434
Query: 301 LDKQLDAISLIEGTINQAIGKKD-------SQQKVIESYKADVNDLDKQLDAISKKLDSV 353
L + + +E + + + + ++ +E + ++ +++L + +LDS+
Sbjct: 435 LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494
Query: 354 EHGQG 358
E Q
Sbjct: 495 ERLQE 499
Score = 29.6 bits (67), Expect = 9.1
Identities = 42/207 (20%), Positives = 85/207 (41%), Gaps = 33/207 (15%)
Query: 547 RREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTV 606
RR ++ EL E+ E+LE+ ++ E+ L + +E+ + + L + S S L
Sbjct: 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL--- 731
Query: 607 ESEKPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQKAKAMR 666
+K + LE E+L ++ + KE+ + +A
Sbjct: 732 ----------------------------RKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
Query: 667 AAYLTDVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQLEGELIDMKDKLAQMTRTGNEIS 726
+E+ L +AEA+I++ + L + ++ L L +++ +L + +
Sbjct: 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLR 823
Query: 727 QHTESNEERALIQSTILSFTEQMQQIE 753
+ ES E R I +T + +QIE
Sbjct: 824 ERLESLERR--IAATERRLEDLEEQIE 848
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 50.1 bits (120), Expect = 5e-06
Identities = 65/348 (18%), Positives = 147/348 (42%), Gaps = 17/348 (4%)
Query: 266 LEDQLAELITLINQAIGKKDSQQKVIESYKADVNELDKQLDAISLIEGTINQAIGKKDSQ 325
E+ L L L+ + + Q + +E + + +E + + K
Sbjct: 184 TEENLERLEDLLEE----LEKQLEKLERQAEKAERYQELKAELRELELAL--LLAKLKEL 237
Query: 326 QKVIESYKADVNDLDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQ 385
+K +E + +++ L+++L+ + ++L+ E L + L++ L+ L E+
Sbjct: 238 RKELEELEEELSRLEEELEELQEELEEAEKEIEELK-SELEELREELEELQEELLELKEE 296
Query: 386 LQDKAGQVKALLSNLDAQFVDEQKLLDEINLWKN--SQSDEDLAHLADSIKPLDEVVERI 443
+++ G++ L L+ + ++L + + K E+L ++ L++++ +
Sbjct: 297 IEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAEL 356
Query: 444 ENNAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKENQSE 503
E + L L E+ L + + E A + E+ ++ +I+ ++ +
Sbjct: 357 EEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERL 416
Query: 504 IDMLNDVWKEIKPKADQESDQL-----IEDQIERINDQWNTLVGDLDTRREKLTELAEQW 558
+ L D+ +E+K + + + +++E + +Q L L +L EL E+
Sbjct: 417 SERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEEL 476
Query: 559 EQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTV 606
++LEK +SS E L +E GV AVL +S L + G V
Sbjct: 477 QRLEKELSSLEARLDRLEAEQRASQGV---RAVLEALESGLPGVYGPV 521
Score = 49.3 bits (118), Expect = 8e-06
Identities = 53/323 (16%), Positives = 137/323 (42%), Gaps = 20/323 (6%)
Query: 518 ADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVET 577
E L ED +E + Q L L+ + +L L E+ EQL+ + E L+ +E
Sbjct: 693 LKNELRSL-EDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEE 751
Query: 578 SVEQCDGVV----HSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKKDGLD 633
+E+ + L L + ++L+ + +E ++ + + ++ ++
Sbjct: 752 ELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDA 811
Query: 634 LQKRITALELLSEELNSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLP 693
L++ + +LE E L ++EE +E+++ + ++E++ L++ + ++++
Sbjct: 812 LERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELE-- 869
Query: 694 PQTLIQFIQQLEGELIDMKDKLAQMTRTGNEISQH-TESNEERALIQSTILSFTEQMQQI 752
++LE EL +++++ ++ E+ E EE ++ + +++++
Sbjct: 870 -----AEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERL 924
Query: 753 EMKLNERKKEVTGCDDAWKHFLSLHAEVMKWVSEKRTFLSE--PYDSNNLSDLRVKLNSY 810
E++L E ++E+ + +L E+ + + + P + + + Y
Sbjct: 925 EVELPELEEELEEE-----YEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERY 979
Query: 811 TELTSFVNKHTRKVKDLSKNTQE 833
EL S + L + +E
Sbjct: 980 EELKSQREDLEEAKEKLLEVIEE 1002
Score = 39.7 bits (93), Expect = 0.007
Identities = 113/659 (17%), Positives = 276/659 (41%), Gaps = 57/659 (8%)
Query: 137 LNKLEHEKNRLGAAIQAGEAATACISRPSSPLESAHPPVPDREIAIR---LRLEDQIEQV 193
L +LE E +RL ++ + + L+S + + ++ L L+++IE++
Sbjct: 241 LEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEEL 300
Query: 194 ESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCKIKAESAQAEIAKMQDL 253
E ++S L E LE E + E L + ++ E +++ E +
Sbjct: 301 EGEISLLRERLEELENELEELEERLEELKEKI------EALKEELEERETLLEELEQLLA 354
Query: 254 KGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKADVNELDKQLDAISLIEG 313
+ +++ E L L EL L + + + + ++ EL ++++++
Sbjct: 355 ELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLE 414
Query: 314 TINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISN 373
+++ + + K +E A++ +L +L+ ++++L+ +E + L+D
Sbjct: 415 RLSERLEDLKEELKELE---AELEELQTELEELNEELEELE--------EQLEELRDRLK 463
Query: 374 TLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLDEINLWKNSQSDEDLAH--LAD 431
LE L E+LQ ++ +L + LD +++ + + +S + +A+
Sbjct: 464 ELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAE 523
Query: 432 SIKPLDEVVERIENNAVPKLKSLLLLREQFTTLIMQI--------VGFI---TETTARVG 480
IK ++ +E +L+++++ E+ ++ F+ R
Sbjct: 524 LIKVKEKYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSL 583
Query: 481 EVDGNSATVQEKID--KYDKENQSEID-MLNDVWK-EIKPKADQESDQLIEDQIERINDQ 536
+ D + D +D + + + +L D + +A + + +L RI +
Sbjct: 584 KSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQARRLARKL------RIKYR 637
Query: 537 WNTLVGDLDTR--------REKLTELAEQWE--QLEKLMSSSERTLKGVETSVEQCDGVV 586
TL GDL R K + LA++ E +LE+ ++ E L+ +E ++ +
Sbjct: 638 IVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNEL 697
Query: 587 HSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSE 646
S L EL L +E + ++ + ++ L+ +L++ + LE E
Sbjct: 698 RS---LEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELE 754
Query: 647 ELNSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQLEG 706
EL +LEE +E++ + A ++E++ Q + ++++ + + + LE
Sbjct: 755 ELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALER 814
Query: 707 ELIDMKDKLAQMTRTGNEISQHTESNEER-ALIQSTILSFTEQMQQIEMKLNERKKEVT 764
EL ++ + ++ + E+ + E EE+ ++ + +++++++ +L E + E
Sbjct: 815 ELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKE 873
Score = 37.0 bits (86), Expect = 0.044
Identities = 40/257 (15%), Positives = 100/257 (38%), Gaps = 22/257 (8%)
Query: 450 KLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLND 509
+L+ L + + ++ + E + E+ ++E++++ +E + + +
Sbjct: 240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEE 299
Query: 510 VWKEIKPKADQESDQL------IEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEK 563
+ EI + ++L +E+++E + ++ L +L+ R L EL + +LE+
Sbjct: 300 LEGEIS-LLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEE 358
Query: 564 LMSSSERTLKGVETSVE---------------QCDGVVHSLAVLTQNKSELESLLGTVES 608
E L + +E + + + L L + LE L +
Sbjct: 359 AKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSE 418
Query: 609 EKPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQKAKAMRAA 668
+ + ++ L+ + +L + + LE EEL +L+E +E+ + +
Sbjct: 419 RLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQR 478
Query: 669 YLTDVEKIGTWLQDAEA 685
++ + L EA
Sbjct: 479 LEKELSSLEARLDRLEA 495
Score = 36.6 bits (85), Expect = 0.063
Identities = 27/181 (14%), Positives = 83/181 (45%), Gaps = 7/181 (3%)
Query: 178 REIAIRLRLEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQ----KSLITDWEK 233
+L+ ++E++E +L +L E L+ + E L +++ K I + E+
Sbjct: 727 ALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEE 786
Query: 234 KPCKIKAESAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIES 293
K ++ E + E + + + ++ LE + L I + + + ++ ++
Sbjct: 787 KRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDE 846
Query: 294 YKADVNELDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSV 353
+ ++ EL+K+L+ + + + + +K+ + ++ + + +L+++L + +L +
Sbjct: 847 LEEELEELEKELEEL---KEELEELEAEKEELEDELKELEEEKEELEEELRELESELAEL 903
Query: 354 E 354
+
Sbjct: 904 K 904
Score = 33.5 bits (77), Expect = 0.57
Identities = 66/349 (18%), Positives = 155/349 (44%), Gaps = 28/349 (8%)
Query: 329 IESYKADVNDLDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQLQD 388
+ +A + L+++L ++ +L S+E L L+++ LE L+ L L++
Sbjct: 676 LAELEAQLEKLEEELKSLKNELRSLED----LLEELRRQLEELERQLE-ELKRELAALEE 730
Query: 389 KAGQVKALLSNLDAQFVDEQKLLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAV 448
+ Q+++ L L+ + + ++ L+E+ E+L L +++ L E +E +E
Sbjct: 731 ELEQLQSRLEELEEELEELEEELEELQERLEELE-EELESLEEALAKLKEEIEELEEKRQ 789
Query: 449 PKLKSLLLLREQFTTL---IMQIVGFITETTARVGEVDGNSATVQEKIDKYDKENQSEID 505
+ L L E+ + + + R ++ ++E+I+ E + ++D
Sbjct: 790 ALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIE----ELEEKLD 845
Query: 506 MLNDVWKEIKPKADQESDQL--IEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEK 563
L + +E++ + ++ ++L +E + E + D+ L + + E+L EL + +L++
Sbjct: 846 ELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905
Query: 564 LMSSSERTLKGVETSVEQCDGVVHSLAVLTQN------KSELESLLGTVESEKPKVSQIS 617
+ L+ +E +E+ + + L + ++ELE + +E E + ++
Sbjct: 906 EIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVN 965
Query: 618 TLA-------APIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEV 659
A + LK DL++ L + EEL+ + E+ KE
Sbjct: 966 LRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKET 1014
Score = 33.1 bits (76), Expect = 0.86
Identities = 65/351 (18%), Positives = 142/351 (40%), Gaps = 37/351 (10%)
Query: 6 QQSQAATQAKQILDQFDTLLGKVKSLLADREDQYKDHRVYKEACDELLTWLTRARDKIPS 65
Q + Q +++ + L +++ L + E+ ++ +E +EL L +++ S
Sbjct: 710 QLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELES 769
Query: 66 MKQKSLSDKLAIENIVAPLESLLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAVKNEMK 125
+++ K IE + ++L ++ EL E + + A++ E++
Sbjct: 770 LEEALAKLKEEIEELEEKRQAL--QEELEELEEELEEAERRL----------DALERELE 817
Query: 126 ALNMKMHWIDLLNKLEHEKNRLGAAIQAGEAATACISRPSSPLESAHPPVPDREIAIRL- 184
+LE E L I+ E + LE E+ L
Sbjct: 818 ------SLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKEL-----EELKEELE 866
Query: 185 RLEDQIEQVESKLSQLNEAEAGLEGE-EKLKAEVLAWIDDQKSLITDWEKKPCKIKAESA 243
LE + E++E +L +L E + LE E +L++E + + K I ++ +++A+
Sbjct: 867 ELEAEKEELEDELKELEEEKEELEEELRELESE----LAELKEEIEKLRERLEELEAKLE 922
Query: 244 QAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGK-KDSQQKVIESY---KADVN 299
+ E+ + L+++ E LE +L I + + I + IE Y +
Sbjct: 923 RLEVELPELE--EELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYE 980
Query: 300 ELDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKL 350
EL Q + + + + + I + D ++ E +K + +++ I K+L
Sbjct: 981 ELKSQREDLEEAKEKLLEVIEELD--KEKRERFKETFDKINENFSEIFKEL 1029
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 49.4 bits (118), Expect = 7e-06
Identities = 94/564 (16%), Positives = 227/564 (40%), Gaps = 62/564 (10%)
Query: 186 LEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCKIKAESAQA 245
LE +E++E K+ +L E E +E E+ + A +++ + L+ + +++ +
Sbjct: 279 LERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKL 338
Query: 246 EIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKADVNELDKQL 305
E + + + + + LLE++L EL + + + + + ++ + + EL ++L
Sbjct: 339 EKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEEL 398
Query: 306 DAISLIEGTINQAI----GKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVEH--GQGV 359
+S I + + + + ++ +E + ++ L++Q++ + K + G G
Sbjct: 399 AELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGE 458
Query: 360 LCPVKANTL-----KDISNTLENSLQTPLEQLQDK--AGQVKALLSNLDAQ---FVDEQK 409
CPV L K++ E L+ E+L + +++ + L+ + +E
Sbjct: 459 KCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELI 518
Query: 410 LLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAVP-KLKSLLLLREQFTTLIMQI 468
L E+ + +E L L + ++ L+E+ E+++ + +L+ L ++ L+
Sbjct: 519 ELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELL--- 575
Query: 469 VGFITETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQESDQLIED 528
+ + +E + + L KE++ + Q + L
Sbjct: 576 ----------------EELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSL 619
Query: 529 QIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHS 588
++ ++ +L++ EKL AE E L+ + E ++ +E + + + +
Sbjct: 620 ELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIEN 679
Query: 589 LAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEEL 648
L + ELE L +E + ++ +L K++ +E L EEL
Sbjct: 680 EEQLEEKLEELEQLEEELEQLREELE------------------ELLKKLGEIEQLIEEL 721
Query: 649 NSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQLEGEL 708
S+ E + ++ + + A L++ K+ L L + Q+E E
Sbjct: 722 ESRKAELEELKKELEKLEKALEL--------LEELREKLGKAGLRADILRNLLAQIEAEA 773
Query: 709 IDMKDKLAQMTRTGNEISQHTESN 732
++ KL+ ++ + N
Sbjct: 774 NEILSKLSLNRYDLRRLTIRKDGN 797
Score = 39.7 bits (93), Expect = 0.008
Identities = 68/449 (15%), Positives = 168/449 (37%), Gaps = 73/449 (16%)
Query: 178 REIAIRLRLEDQIEQVESKLSQLNEAEAGLEGE-EKLKAEVLAWIDDQKSLITDWEKKPC 236
E+ L +++E++ KL L E LE + EKL++E+ ++
Sbjct: 305 EELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEE------------- 351
Query: 237 KIKAESAQAEIAKMQDLKGVVLQKQTEGLLEDQLA---ELITLINQAIGKKDSQQKVIES 293
K + E K + + L+K+ E LE + L + + +++ E
Sbjct: 352 KNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEE 411
Query: 294 YKADVNELDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDL-------------- 339
+ EL++ + +E + I K + Q +ES + + +L
Sbjct: 412 LEELEKELEELERELEELE----EEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQEL 467
Query: 340 ------------DKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQLQ 387
+ +L+ + ++L + + + L+ LE L LE +
Sbjct: 468 PEEHEKELLELYELELEELEEELSREKEEAELR--EEIEELEKELRELEEELIELLELEE 525
Query: 388 DKAGQVKALLSNLDAQFVDEQKLLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNA 447
+++ L L+ + ++L +++ L + + L +K L E R+
Sbjct: 526 ALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEE-LRLLRTR 584
Query: 448 VPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQ------------EKIDK 495
+L+ L ++ + ++ +++ + ++ + A + EK++
Sbjct: 585 KEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNL 644
Query: 496 YDKENQSEIDMLND-----------VWKEIKPKADQESDQLIEDQIERINDQWNTLVGDL 544
+ + L + + +E++ ++E + +++E++ ++ L +L
Sbjct: 645 QAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREEL 704
Query: 545 DTRREKLTELAEQWEQLEKLMSSSERTLK 573
+ +KL E+ + E+LE + E K
Sbjct: 705 EELLKKLGEIEQLIEELESRKAELEELKK 733
Score = 37.8 bits (88), Expect = 0.026
Identities = 94/566 (16%), Positives = 237/566 (41%), Gaps = 59/566 (10%)
Query: 239 KAESAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLIN-----------QAIGKKDSQ 287
K E+ K K L+ Q LLED L L Q +++
Sbjct: 171 KLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEEL 230
Query: 288 QKVIESYKADVNELDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAIS 347
++ IE+ + + EL+++ + + ++ + + + K+ E ++ L ++L+
Sbjct: 231 EQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKI 290
Query: 348 KKLDSVEH------GQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLD 401
++L+ +E + L+++ L+ SL+ LE+L++K ++++ L L
Sbjct: 291 ERLEELEREIEELEEELEGLRALLEELEELLEKLK-SLEERLEKLEEKLEKLESELEELA 349
Query: 402 AQFVDEQKLLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLLLLREQF 461
+ + KLL+E + + +E L L ++ E ++++E ++ L +
Sbjct: 350 EEKNELAKLLEE----RLKELEERLEELEKELEKALERLKQLEEA----IQELKEELAEL 401
Query: 462 TTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDV----------- 510
+ + +I + E + E++ ++E+I K +++ +
Sbjct: 402 SAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCP 461
Query: 511 --WKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEK----- 563
+E+ + ++E +L E ++E + ++ + + RE++ EL ++ +LE+
Sbjct: 462 VCGQELPEEHEKELLELYELELEELEEE-LSREKEEAELREEIEELEKELRELEEELIEL 520
Query: 564 ------LMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVSQIS 617
L E L+ +E +E+ + + L Q E L E ++ +
Sbjct: 521 LELEEALKEELEEKLEKLENLLEELEELKEKL--QLQQLKEELRQLEDRLQELKELLEEL 578
Query: 618 TLAAPIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQKAKAMRAAYLTDVEKIG 677
L + L++ L++R+ L+ +EL +L + + +Q + A ++E+
Sbjct: 579 RLLRTRKEELEE----LRERLKELKKKLKELEERLSQLEELLQSLELSEAEN--ELEEAE 632
Query: 678 TWLQDAEAKIQDRTLPPQTLIQFIQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERAL 737
L+ K+ + + L +++LE ++ +++ ++ + + Q E EE
Sbjct: 633 EELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQ 692
Query: 738 IQSTILSFTEQMQQIEMKLNERKKEV 763
++ + E+++++ KL E ++ +
Sbjct: 693 LEEELEQLREELEELLKKLGEIEQLI 718
Score = 35.5 bits (82), Expect = 0.15
Identities = 55/301 (18%), Positives = 134/301 (44%), Gaps = 18/301 (5%)
Query: 455 LLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEI 514
L E++ L + I E A++ E++G + + E I+ + + E+ L + +EI
Sbjct: 163 LFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKL-EEI 221
Query: 515 KPKADQESDQLIEDQIERINDQWNTLVGDLDTRREK-------LTELAEQWEQLEKLMSS 567
+ +++ ++ +E +IE + ++ L + + E + E + E+ +
Sbjct: 222 Q---EEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRE 278
Query: 568 SERTLKGVETSVEQCDGVVHSLAVLTQN-------KSELESLLGTVESEKPKVSQISTLA 620
ER L+ +E +E+ + + + L + ELE LL ++S + ++ ++
Sbjct: 279 LERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKL 338
Query: 621 APIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWL 680
+ L++ + + LE +EL +LEE KE++KA ++++ L
Sbjct: 339 EKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEEL 398
Query: 681 QDAEAKIQDRTLPPQTLIQFIQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQS 740
+ A +++ + L + +++LE EL ++++++ ++ N++ E A
Sbjct: 399 AELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGE 458
Query: 741 T 741
Sbjct: 459 K 459
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 44.2 bits (105), Expect = 3e-04
Identities = 85/419 (20%), Positives = 154/419 (36%), Gaps = 63/419 (15%)
Query: 326 QKVIESYKADVNDLDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQ 385
+ IE K ++ L+++++ + +++ K L+ N + L +
Sbjct: 94 EAQIEELKKELKKLEEKIEQLEAEIEK-----------KEEELEKAKNKFLDKAWKKLAK 142
Query: 386 LQDKAGQVKALLSNLDAQFVDEQKLLDEI-NLWKNSQSDEDLAHLADSIKPLDEVVERIE 444
D N F + KLL E+ ++ N+ S L L IK L + E
Sbjct: 143 KYDSNLSEALKGLNYKKNFKE--KLLKELKSVILNASSLLSLEELKAKIKTLFSS-NKPE 199
Query: 445 NNAVPKLKSLLLLREQFTTLIMQIVG----FITETTARVGEVDGNSATVQEKIDKYDKEN 500
+ EQ L I+G I+E +G NS V+E + +Y +E
Sbjct: 200 LALLTLSVIDFDEIEQAEILEKSIIGSSDVPISELINNLG----NSDWVKEGL-EYHEEG 254
Query: 501 ------QSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTEL 554
Q I + E++ D+E +LIE Q+E + D ++ EK E
Sbjct: 255 DTCPFCQQTIT--EERKAELEAHFDEEYQELIE-QLEELID-------KYESHIEKALEE 304
Query: 555 AEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVS 614
E EK S + ++ ++ +E + ++ + K + S +ES +
Sbjct: 305 LESILDTEKENSEFKLDVEELKALLEALEEILEKNLQKLEEKLKDPSTSIELESITDLIE 364
Query: 615 QISTLAAPIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQKAKA-----MRAAY 669
I I A+ L E N K++ KE KAK + A
Sbjct: 365 SI------------------NDIIDAINELIREHNEKIDNLKKEKNKAKKKLWLHLVAEL 406
Query: 670 LTDVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQLEGELIDMKDKLAQMTRTGNEISQH 728
D++ + E I + L I+ LE E+ +++ +L + T +EI++
Sbjct: 407 KEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQLTNIEPTADEINKL 465
Score = 42.3 bits (100), Expect = 0.001
Identities = 75/400 (18%), Positives = 153/400 (38%), Gaps = 50/400 (12%)
Query: 187 EDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCKIKAESAQAE 246
E QIE+++ +L +L E LE E + K E L +K + A +
Sbjct: 94 EAQIEELKKELKKLEEKIEQLEAEIEKKEEEL--------------EKAKNKFLDKAWKK 139
Query: 247 IAKMQDLKGVVLQKQTEGLLEDQ--LAELITLINQAIGKKD---SQQKVIESYKADVNEL 301
+AK D L + +GL + +L+ + I S +++ K +
Sbjct: 140 LAKKYDS---NLSEALKGLNYKKNFKEKLLKELKSVILNASSLLSLEELKAKIKTLFSSN 196
Query: 302 DKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVEHGQGVL- 360
+L ++L ++ + ++ +I S +++L L D V+ G
Sbjct: 197 KPELALLTLSVIDFDEIEQAEILEKSIIGSSDVPISELINNLGN----SDWVKEGLEYHE 252
Query: 361 ----CPVKANTL-KDISNTLEN----SLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLL 411
CP T+ ++ LE Q +EQL++ + ++ + + E L
Sbjct: 253 EGDTCPFCQQTITEERKAELEAHFDEEYQELIEQLEELIDKYESHIEKALEEL--ESILD 310
Query: 412 DEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLLLLREQFTTLIMQIVGF 471
E +NS+ D+ L ++ L+E++E+ KLK E + I
Sbjct: 311 TEK---ENSEFKLDVEELKALLEALEEILEKNLQKLEEKLKDPSTSIE-----LESITDL 362
Query: 472 ITETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQESDQLIEDQIE 531
I + ++ EKID KE +W + + ++ D + + +
Sbjct: 363 IESINDIIDAINELIREHNEKIDNLKKEKNKAKK---KLWLHLVAELKEDIDA-YQKEKK 418
Query: 532 RINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERT 571
+ N+L ++ ++ L ++ ++LEK +++ E T
Sbjct: 419 GLEKAINSLEKEIKQLEAEIKALEKEIKELEKQLTNIEPT 458
Score = 36.5 bits (85), Expect = 0.058
Identities = 58/348 (16%), Positives = 137/348 (39%), Gaps = 55/348 (15%)
Query: 498 KENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQ 557
E +++I+ L K+++ + ++ + IE + E + N LD +KL + +
Sbjct: 91 IEIEAQIEELKKELKKLE-EKIEQLEAEIEKKEEELEKAKNKF---LDKAWKKLAKKYD- 145
Query: 558 WEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTV-ESEKPKVSQI 616
L + + E +++ V+ + + L + EL++ + T+ S KP+++ +
Sbjct: 146 -SNLSEALKGLNYKKNFKEKLLKELKSVILNASSLL-SLEELKAKIKTLFSSNKPELALL 203
Query: 617 STLAAPIVKFLKKDGLDLQKRIT-----ALELLSEEL-NSKLEEKGKEVQKAKAMRAAY- 669
TL+ +++ + L+K I + L L NS ++G E + +
Sbjct: 204 -TLSVIDFDEIEQAEI-LEKSIIGSSDVPISELINNLGNSDWVKEGLEYHEEGD-TCPFC 260
Query: 670 --LTDVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQLEGELIDMKDK-LAQMTRTGNEIS 726
E+ L EA + Q LI+ +++L + +K L ++ +
Sbjct: 261 QQTITEERK-AEL---EAHFDEEY---QELIEQLEELIDKYESHIEKALEELESILDTEK 313
Query: 727 QHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMKWVSE 786
+++E + +++ + + E +++ KL E+ K+ S
Sbjct: 314 ENSEFKLDVEELKALLEALEEILEKNLQKLEEKLKDP---------------------ST 352
Query: 787 KRTFLSEPYDSNNLSDLRVKLNSYTELTSFVNKHTRKVKDLSKNTQEA 834
S +++D+ +N + +H K+ +L K +A
Sbjct: 353 SIELESITDLIESINDIIDAINEL------IREHNEKIDNLKKEKNKA 394
Score = 35.0 bits (81), Expect = 0.19
Identities = 35/202 (17%), Positives = 73/202 (36%), Gaps = 41/202 (20%)
Query: 191 EQVESKLSQLNEAEAGLEGE-EKLKAEVLAWIDDQKSLITDWEKKPCKIKAESAQAEIAK 249
E+ + + QL E E EK E+ + +D +K E +A +
Sbjct: 278 EEYQELIEQLEELIDKYESHIEKALEELESILDTEKENSEFKLDV------EELKALLEA 331
Query: 250 MQD----LKGVVLQKQTE----------GLLEDQLAELITLINQAIGK--------KDSQ 287
+++ + +K + L + + ++I IN+ I + K +
Sbjct: 332 LEEILEKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKIDNLKKEK 391
Query: 288 QKVIE----SYKAD-VNELDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQ 342
K + A+ ++D +E IN + + I++ + ++ +L+KQ
Sbjct: 392 NKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQ 451
Query: 343 L-------DAISKKLDSVEHGQ 357
L D I+K L + G
Sbjct: 452 LTNIEPTADEINKLLKAYGFGN 473
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 38.9 bits (91), Expect = 0.014
Identities = 80/441 (18%), Positives = 179/441 (40%), Gaps = 63/441 (14%)
Query: 185 RLEDQIEQVESK---------LSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKP 235
+L+ QIE+ E K S+L E + +E E+ + + D+ ++ + E++
Sbjct: 191 QLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERR 250
Query: 236 CKIKAESAQAEIAKMQDLKGVVLQKQTE-----GLLEDQLAELITLINQAIGKKDSQQKV 290
++ E+ +AEI +++ +++ E L ++L EL + + +
Sbjct: 251 EEL--ETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDAD 308
Query: 291 IESYKADVNELDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKL 350
E+ +A EL+ + + + A + + ES + D +DL+++ + + ++
Sbjct: 309 AEAVEARREELEDRDEELRDRLEECRVAAQAHNEE---AESLREDADDLEERAEELREEA 365
Query: 351 DSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKL 410
+E + L++ +E+ + +E+L+++ +++ + + +
Sbjct: 366 AELE-----------SELEEAREAVEDR-REEIEELEEEIEELRERFGDAPVDLGNAEDF 413
Query: 411 LDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLLLLREQFTTLIMQ--- 467
L+E+ + + E A L +++ E VE E LL Q
Sbjct: 414 LEEL-REERDELREREAELEATLRTARERVEEAEA----------LLEAGKCPECGQPVE 462
Query: 468 ---IVGFITETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQESD- 523
V I E RV E++ ++E++++ ++ + D L + I+ ++ D
Sbjct: 463 GSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAED-LVEAEDRIERLEERREDL 521
Query: 524 -QLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQC 582
+LI ++ E I + +RE+ EL E+ +LE E E+
Sbjct: 522 EELIAERRETIEE-----------KRERAEELRERAAELEAEAEEKREAAAEAEEEAEEA 570
Query: 583 DGVVHSL-AVLTQNKSELESL 602
V L + L + K +ESL
Sbjct: 571 REEVAELNSKLAELKERIESL 591
Score = 34.6 bits (80), Expect = 0.25
Identities = 46/259 (17%), Positives = 97/259 (37%), Gaps = 30/259 (11%)
Query: 497 DKENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAE 556
+KE + + LN + E+ ++++IER +Q D E L E E
Sbjct: 198 EKEEKDLHERLNGLESELAE---------LDEEIERYEEQREQARETRDEADEVLEEHEE 248
Query: 557 QWEQLEKL---MSSSERTLKGVETSVEQCDGVVHSL-AVLTQNKSELESLLGTVESEKPK 612
+ E+LE L + T+ E E+ V L L + + E + LL +
Sbjct: 249 RREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDAD 308
Query: 613 VS----QISTLAA-------------PIVKFLKKDGLDLQKRITALELLSEELNSKLEEK 655
+ L + ++ L++ LE +EEL + E
Sbjct: 309 AEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAEL 368
Query: 656 GKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQLEGELIDMKDKL 715
E+++A+ ++E++ +++ + D + F+++L E +++++
Sbjct: 369 ESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRERE 428
Query: 716 AQMTRTGNEISQHTESNEE 734
A++ T + E E
Sbjct: 429 AELEATLRTARERVEEAEA 447
Score = 30.4 bits (69), Expect = 5.6
Identities = 66/430 (15%), Positives = 159/430 (36%), Gaps = 50/430 (11%)
Query: 266 LEDQLAELITLIN-------QAIGKKDSQQKVIESYKADVNELDKQLDAISLIEGTINQA 318
LE +LAEL I QA +D +V+E ++ EL+ I + TI +
Sbjct: 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAET 270
Query: 319 IGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENS 378
+++ + + + + +L+ + L A ++ LE+
Sbjct: 271 EREREELAEEVRDLRERLEELE---EERDDLLAEAGLDDA-----DAEAVEARREELEDR 322
Query: 379 LQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLDEINLWKNSQSDEDLAHLADSIKPLDE 438
+ ++L++ +A ++ ++ L+E ++ E + L ++ + +++
Sbjct: 323 DEELRDRLEECRVAAQAHNEEAES-LREDADDLEERAEELREEAAELESELEEAREAVED 381
Query: 439 VVERIE-------------NNAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGN 485
E IE +A L + E+ ++ E A +
Sbjct: 382 RREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARER 441
Query: 486 SATVQEKIDK-------YDKENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWN 538
+ ++ E ++ + + D+E + +E ++E + ++
Sbjct: 442 VEEAEALLEAGKCPECGQPVEGSPHVETIEE---------DRERVEELEAELEDLEEE-- 490
Query: 539 TLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSE 598
V +++ R E+ +L E +++E+L E + + E + L + +E
Sbjct: 491 --VEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAE 548
Query: 599 LESLLGTVESEKPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKE 658
LE+ + + + A V L +L++RI +LE + L + + + E
Sbjct: 549 LEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLL-AAIADAEDE 607
Query: 659 VQKAKAMRAA 668
+++ + R A
Sbjct: 608 IERLREKREA 617
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 38.9 bits (91), Expect = 0.014
Identities = 52/277 (18%), Positives = 120/277 (43%), Gaps = 41/277 (14%)
Query: 491 EKIDKYDKENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREK 550
E I++ KE + E++ + EI + + ++L +++E+ V +L+ +E+
Sbjct: 189 ENIEELIKEKEKELEEVLREINEISSELPELREEL--EKLEK-------EVKELEELKEE 239
Query: 551 LTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEK 610
+ EL ++ E LE E ++ +E +E+ L + ELE + ++ K
Sbjct: 240 IEELEKELESLEGSKRKLEEKIRELEERIEE----------LKKEIEELEEKVKELKELK 289
Query: 611 PKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEELN---SKLEEKGKEVQKAKAMRA 667
K + L+ ++L + +++KR++ LE + +LEEK + +++ K
Sbjct: 290 EKAEEYIKLSEFYEEYLDELR-EIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLK 348
Query: 668 AYLTDVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQLEGELIDMKDKLAQMTRTGNEISQ 727
+E++ + L + + + EL +K +L T ++ +
Sbjct: 349 ELEKRLEELEERHE---------------LYEEAKAKKEELERLKKRLTG--LTPEKLEK 391
Query: 728 HTESNEERAL-IQSTILSFTEQMQQIEMKLNERKKEV 763
E E+ I+ I T ++ +++ ++ E KK +
Sbjct: 392 ELEELEKAKEEIEEEISKITARIGELKKEIKELKKAI 428
Score = 32.7 bits (75), Expect = 1.1
Identities = 49/236 (20%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 177 DREIAIRLRLEDQIEQVESKLSQLN--EAEAGLEGEEKLKAEVLAWIDDQKSLITDWEK- 233
+ E+ L +Q++++E KL + N E E E EKLK +++ + KSL + EK
Sbjct: 492 ESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKL 551
Query: 234 KPCKIKAESAQAEIAKMQDLKGVVLQK------QTEGLLEDQLAELITLINQAIGKKDSQ 287
+ K K + ++ ++++ +L++ ++ LE++L EL N+ + KD++
Sbjct: 552 EELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAE 611
Query: 288 QKVIESYKADVNELDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAIS 347
+ EL+++ + +E +++A + + + + +L K+L+ +
Sbjct: 612 K-----------ELEREEKELKKLEEELDKAF-------EELAETEKRLEELRKELEELE 653
Query: 348 KKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQ 403
KK E+ + ++S L L+ LE+L+ + ++K L L +
Sbjct: 654 KKYSEEEYEE------LREEYLELSRELA-GLRAELEELEKRREEIKKTLEKLKEE 702
Score = 31.6 bits (72), Expect = 2.1
Identities = 84/509 (16%), Positives = 220/509 (43%), Gaps = 62/509 (12%)
Query: 181 AIRLRLEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCKIKA 240
+ ++ +IE++E + + E ++ +EK EVL I++ S + + ++
Sbjct: 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREE-----L 223
Query: 241 ESAQAEIAKMQDLKGVVLQKQTEGLLEDQ----LAELITLINQAIGKKDSQQKVIESYKA 296
E + E+ ++++LK + + + E + L E I + + I + + + +E
Sbjct: 224 EKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVK 283
Query: 297 DVNELDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVEHG 356
++ EL ++ + + + + + +K + + ++N +++++ + +K + +E
Sbjct: 284 ELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEEL 343
Query: 357 QGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDE--QKLLDEI 414
+ K L+ LE +L ++A K L L + +KL E+
Sbjct: 344 KK-----KLKELEKRLEELE-----ERHELYEEAKAKKEELERLKKRLTGLTPEKLEKEL 393
Query: 415 NLWKNSQSD--EDLAHLADSIKPLDEVVERIENNAVPKLKSL--------LLLREQFTTL 464
+ ++ + E+++ + I L + ++ + A+ +LK L E+
Sbjct: 394 EELEKAKEEIEEEISKITARIGELKKEIKEL-KKAIEELKKAKGKCPVCGRELTEEHRKE 452
Query: 465 IMQIVGFITETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQESDQ 524
+++ E TA + ++ ++EK K KE L ++ K +K +++ +
Sbjct: 453 LLE------EYTAELKRIEKELKEIEEKERKLRKE-------LRELEKVLKKESELIKLK 499
Query: 525 LIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDG 584
+ +Q++ + ++ E+L + AE++E+L++ + + +K ++ +E+ +
Sbjct: 500 ELAEQLKELEEKLKKY------NLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE 553
Query: 585 VVHSLAVLTQNKSELESLLGTV---------ESEKPKVSQISTLAAPIVKFLKKDGLDLQ 635
+ LA L + ELE L + ES + ++ L ++L+ D +
Sbjct: 554 LKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLEL--KDAE 611
Query: 636 KRITALELLSEELNSKLEEKGKEVQKAKA 664
K + E ++L +L++ +E+ + +
Sbjct: 612 KELEREEKELKKLEEELDKAFEELAETEK 640
Score = 30.0 bits (68), Expect = 6.7
Identities = 87/425 (20%), Positives = 184/425 (43%), Gaps = 56/425 (13%)
Query: 178 REIAIRL-RLEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPC 236
REI RL RLE++I +E ++ +L E E LE +K E+ + + + +
Sbjct: 310 REIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELE----KRLEELEERHELYE 365
Query: 237 KIKAESAQAEIAKMQDLKGVVLQKQTEGL--LEDQLAELITLINQAIGKKDSQQKVIESY 294
+ KA+ + E K + L G+ +K + L LE E+ I++ + +K I+
Sbjct: 366 EAKAKKEELERLK-KRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKEL 424
Query: 295 KADVNELDKQ-----LDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKK 349
K + EL K + L E + + + ++ K IE ++ + +++L ++
Sbjct: 425 KKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRE 484
Query: 350 LDSVEHGQGVLCPVK--ANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDE 407
L+ V + L +K A LK++ L+ LE+ ++ ++K L L +
Sbjct: 485 LEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSL 544
Query: 408 QKLLDEINLWKNS---------QSDEDLAHLADSIKPL-----DEVVERIEN-------- 445
+K L+++ K + +E+LA L ++ L +E+ ER++
Sbjct: 545 KKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEY 604
Query: 446 ----NAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKENQ 501
+A +L+ ++ + + + ET R+ E+ ++E KY +E
Sbjct: 605 LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEEL---RKELEELEKKYSEEE- 660
Query: 502 SEIDMLNDVWKEIKPKADQESDQL--IEDQIERINDQWNTLVGDLDTRREKLTELAEQWE 559
++E++ + + S +L + ++E + + + L+ +E+L E + +
Sbjct: 661 ---------YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKK 711
Query: 560 QLEKL 564
+LEKL
Sbjct: 712 ELEKL 716
>gnl|CDD|224428 COG1511, COG1511, Predicted membrane protein [Function unknown].
Length = 780
Score = 36.3 bits (84), Expect = 0.069
Identities = 48/333 (14%), Positives = 106/333 (31%), Gaps = 50/333 (15%)
Query: 186 LEDQIEQVESKLS-QLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCKIKAESAQ 244
E +++ +++S +L E K I D + A
Sbjct: 145 TEKAADKLLNEISKELTET--------YTKVVAFPTIYDLGGGVKG---------AADGA 187
Query: 245 AEIAKMQDLKGVVLQKQTEGL--LEDQLAELITLINQAIGK----KDSQQKVIESYKADV 298
++ D +K ++ L L + A +N D ++
Sbjct: 188 EKLKDGTDEASNGNKKLSDLLNTLNNSSATFSDGLNALTSGLTTLTDGLNQLDSGLGTLA 247
Query: 299 NELDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVEHGQG 358
+ + + +N+ IG+ + + V DL + +++ + ++ G
Sbjct: 248 AGIGE----LKQGAEQLNEGIGE---FSSGLSELNSGVQDLAAGVPQLNQGISALAAG-- 298
Query: 359 VLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLDEINLWK 418
+L D +SLQ L Q+ Q + S+L+A L + L K
Sbjct: 299 -------LSLPDSLGDQFSSLQEALTQIAQGLKQKTS--SSLEAAQGSLSSLQSMLALSK 349
Query: 419 NS-----QSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLLLLREQFTTL---IMQIVG 470
+ + D D ++ LDE + + + + + E L Q+
Sbjct: 350 SLDLTAEGATVDALGAPDGVQWLDESQKTLATLSELLSTGIDGVSEGLDALEQASAQLAK 409
Query: 471 FITETTARVGEVDGNSATVQEKIDKYDKENQSE 503
+ + V ++ + A + + K +S+
Sbjct: 410 SLAKLKTAVAQIAASIAQLLPGASEVLKTLKSK 442
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 35.7 bits (83), Expect = 0.10
Identities = 43/248 (17%), Positives = 87/248 (35%), Gaps = 38/248 (15%)
Query: 339 LDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALLS 398
L D + + L H GV+ ++D+ L N L L K + L
Sbjct: 14 LKSYKDEVLEAL----HELGVV------HIEDLKEELSNERLRKLRSLLTKLSEALDKLR 63
Query: 399 ------NLDAQFVDEQKLLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIEN------- 445
N + + + L K +E+L + IK L+E + +EN
Sbjct: 64 SYLPKLNPLREEKKKVSVKSLEELIK--DVEEELEKIEKEIKELEEEISELENEIKELEQ 121
Query: 446 --NAVPKLKSL--LLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKEN- 500
+ + L + VG + E +++ + V+
Sbjct: 122 EIERLEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYV 181
Query: 501 --QSEIDMLNDVWKEIKPKADQESDQLIE-----DQIERINDQWNTLVGDLDTRREKLTE 553
++ ++V +E+K K E +L E + I I ++ + + ++ E+L E
Sbjct: 182 VVVVLKELSDEVEEELK-KLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKE 240
Query: 554 LAEQWEQL 561
LA+++ +
Sbjct: 241 LAKKYLEE 248
Score = 31.8 bits (73), Expect = 1.8
Identities = 31/169 (18%), Positives = 66/169 (39%), Gaps = 23/169 (13%)
Query: 186 LEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCKIKAESAQA 245
+E +I+++E ++S+L LE E + W + L K + +
Sbjct: 98 IEKEIKELEEEISELENEIKELEQE---IERLEPWGNFDLDLSLLLGFKYVSVFVGTVPE 154
Query: 246 EIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKADVNELDKQL 305
+ + +LK + E + D+ + ++ V++ +V E K+L
Sbjct: 155 DKLE--ELKLESDVENVEYISTDKGYVYVVVV------------VLKELSDEVEEELKKL 200
Query: 306 DAISLI---EGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLD 351
L EGT ++ I + + + IE + L ++L ++KK
Sbjct: 201 GFERLELEEEGTPSELIREIKEELEEIEKER---ESLLEELKELAKKYL 246
>gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein;
Provisional.
Length = 1109
Score = 35.8 bits (83), Expect = 0.10
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 9/136 (6%)
Query: 285 DSQQKVIESYKADVNELDKQLDAISLIEGTINQAIGKKDSQ------QKVIESYKADVND 338
D +Q E +A + Q + + ++ +N +K S Q+VI+++ +
Sbjct: 24 DEKQITQELEQAKAAKTPAQAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAE 83
Query: 339 LDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALLS 398
L +QL+ + SV ++ L+ S LE S Q +Q QD+A ++ LS
Sbjct: 84 LRQQLNNERDEPRSVPPNMST-DALEQEILQVSSQLLEKSRQ--AQQEQDRAREISDSLS 140
Query: 399 NLDAQFVDEQKLLDEI 414
L Q + ++ L+EI
Sbjct: 141 QLPQQQTEARRQLNEI 156
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 35.8 bits (83), Expect = 0.10
Identities = 41/228 (17%), Positives = 88/228 (38%), Gaps = 24/228 (10%)
Query: 266 LEDQLAELITLINQAIGKKDSQQKVIESYKADVNE--------LDKQLDAISLIEGTINQ 317
L Q+ L I+ + + K IE + E D+ ++ I+ I +
Sbjct: 179 LNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEE 238
Query: 318 AIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVE-----HGQGVLCPVKANTLKDIS 372
+ + IE A +N L+ I K++ + + +G +CP + +
Sbjct: 239 LTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGP 298
Query: 373 NTLEN------SLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLDEINLWKNSQSDEDL 426
+ + LQ LE+L +++ ++ +F ++ K L E+ K S + + L
Sbjct: 299 DRITKIKDKLKELQHSLEKLDTAIDELEEIMD----EFNEQSKKLLELKN-KISTNKQSL 353
Query: 427 AHLADSIKPLDEVVERIENNAVPKLKSLLLLREQFTTLIMQIVGFITE 474
L D K + +E ++ V + L L+++ ++ + E
Sbjct: 354 ITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401
Score = 29.6 bits (67), Expect = 9.4
Identities = 40/231 (17%), Positives = 100/231 (43%), Gaps = 33/231 (14%)
Query: 396 LLSNLDAQFVDEQKLLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLL 455
+ ++ Q K ++E ++ E++A + DE+VE + +K+ +
Sbjct: 189 KIDHIQQQIKTYNKNIEEQR----KKNGENIARKQNKY---DELVEEAKT-----IKAEI 236
Query: 456 LLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKENQ------------SE 503
E+ T ++ +V I + +A + +++ +A ++ KI+++ K + +
Sbjct: 237 ---EELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQ 293
Query: 504 IDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEK 563
I D +IK K + L ++++ D+ ++ + + + +KL EL + ++
Sbjct: 294 ISEGPDRITKIKDKLKELQHSL--EKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQ 351
Query: 564 LMSSSERTLKGVETSVE--QCDGVVHS--LAVLTQNKSELESLLGTVESEK 610
+ + K V+ ++E Q + V ++ LA L ++ + EK
Sbjct: 352 SLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK 402
>gnl|CDD|197544 smart00150, SPEC, Spectrin repeats.
Length = 101
Score = 33.1 bits (76), Expect = 0.10
Identities = 16/98 (16%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 669 YLTDVEKIGTWLQDAEAKIQDRTLPP-----QTLIQFIQQLEGELIDMKDKLAQMTRTGN 723
+L D +++ WL++ E + L + L++ + E EL ++++ + G
Sbjct: 3 FLRDADELEAWLEEKEQLLASEDLGKDLESVEALLKKHEAFEAELEAHEERVEALNELGE 62
Query: 724 EISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKK 761
++ + E + + I+ + E+ ++++ ER++
Sbjct: 63 QLIE--EGHPDAEEIEERLEELNERWEELKELAEERRQ 98
Score = 28.1 bits (63), Expect = 5.9
Identities = 15/85 (17%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 473 TETTARVGEVDGNSATVQEKIDKYD------KENQSEIDMLNDVWKEIKPKADQESDQLI 526
E ++ + +V+ + K++ + ++ ++ LN++ +++ + ++++ I
Sbjct: 17 KEQLLASEDLGKDLESVEALLKKHEAFEAELEAHEERVEALNELGEQLIEEGHPDAEE-I 75
Query: 527 EDQIERINDQWNTLVGDLDTRREKL 551
E+++E +N++W L + RR+KL
Sbjct: 76 EERLEELNERWEELKELAEERRQKL 100
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 34.9 bits (80), Expect = 0.21
Identities = 96/542 (17%), Positives = 213/542 (39%), Gaps = 86/542 (15%)
Query: 122 NEMKALNMKMHWIDLLNKLEHEKNRLGAAIQAGEAATACISRPSSPLESAHPPVPDREIA 181
N M N ++ L+ LE KNR + I+ E+ + ++ +
Sbjct: 229 NAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKE----------- 277
Query: 182 IRLRLEDQIEQVESKLSQLNEAEA----GLEGEEKLKAEVLAWIDDQKSLITDWEKKPCK 237
LE++ ++ + N + + + K ++L+ ID + + KK
Sbjct: 278 ----LEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSV 333
Query: 238 IKAESAQAEIAK--MQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYK 295
++ + K DL +L N + +S +K IE Y
Sbjct: 334 LQKDYNDYIKKKSRYDDLNN----------QILELEGYEMDYNSYLKSIESLKKKIEEYS 383
Query: 296 ADVNELDKQLDAISLIEGTINQAIGKKDSQQKV-IESYKADVNDLDKQLDAISKKLDSVE 354
++ + + I I+ AI K+ ++ V ++ + V+ L++++ A+ + LD +
Sbjct: 384 KNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELS 443
Query: 355 ------HGQGVLCPVKANTL-KDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDE 407
+GQ V CPV TL ++ SN + N +L++K +++ + ++D + VD
Sbjct: 444 RNMEMLNGQSV-CPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDL 502
Query: 408 QKLLDEI------------NLWKNSQSD-----EDLAHLADSIKPLDEVVERIEN----- 445
+K + + N +++++D + L D +E+ R ++
Sbjct: 503 KKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLED 562
Query: 446 -----------NAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKID 494
AV L + R + + Q + + +R+ E++ + ID
Sbjct: 563 LDSKRTSWLNALAVISLIDIETNRSRSNEIKKQ----LNDLESRLQEIEIGFPDDKSYID 618
Query: 495 KYDKENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTEL 554
K +E ++E + LN+ + EI QE+ LIE +I++ + + ++D+ L E+
Sbjct: 619 KSIREIENEANNLNNKYNEI-----QENKILIEKLRGKIDN-YKKQIAEIDSIIPDLKEI 672
Query: 555 AEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVS 614
+ +E + S + L + + + + + +L +EL + + +
Sbjct: 673 TSRINDIEDNLKKSRKALDDAKANRARLESTIE---ILRTRINELSDRINDINETLESMK 729
Query: 615 QI 616
+I
Sbjct: 730 KI 731
Score = 29.9 bits (67), Expect = 6.6
Identities = 29/172 (16%), Positives = 69/172 (40%), Gaps = 12/172 (6%)
Query: 181 AIRLRLEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCKIKA 240
R R + +Q+ S+L E E G ++ + + I+++ + + + K
Sbjct: 584 TNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNN--------KY 635
Query: 241 ESAQAEIAKMQDLKGVV--LQKQTEGL--LEDQLAELITLINQAIGKKDSQQKVIESYKA 296
Q ++ L+G + +KQ + + L E+ + IN +K ++ KA
Sbjct: 636 NEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKA 695
Query: 297 DVNELDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISK 348
+ L+ ++ + ++ I + + ++ K + DL + +A K
Sbjct: 696 NRARLESTIEILRTRINELSDRINDINETLESMKKIKKAIGDLKRLREAFDK 747
>gnl|CDD|220368 pfam09730, BicD, Microtubule-associated protein Bicaudal-D. BicD
proteins consist of three coiled-coiled domains and are
involved in dynein-mediated minus end-directed transport
from the Golgi apparatus to the endoplasmic reticulum
(ER). For full functioning they bind with GSK-3beta
pfam05350 to maintain the anchoring of microtubules to
the centromere. It appears that amino-acid residues
437-617 of BicD and the kinase activity of GSK-3 are
necessary for the formation of a complex between BicD
and GSK-3beta in intact cells.
Length = 711
Score = 34.0 bits (78), Expect = 0.39
Identities = 40/203 (19%), Positives = 88/203 (43%), Gaps = 17/203 (8%)
Query: 554 LAEQWEQLEKLMSSSERTLKGVETSVEQCDGVV----HSLAVLTQNKSELESLLGTVESE 609
L +Q EQ+E+ +S L+ ++T +EQ +G + + LT++ + L +L + E +
Sbjct: 264 LKQQLEQVEREKASLLANLQELQTQLEQSEGALSEQHEKVNRLTEHLNALRNLQASKEQQ 323
Query: 610 KPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQKAKAMRAAY 669
S+ + +DG + I E+L + + E G+ + KA++A Y
Sbjct: 324 DGLDSEKDRGSH-------EDGDYYEVDINGPEILECKYRVAVSEVGELKAELKALKARY 376
Query: 670 LTDVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQLEGELIDMKDKLAQMTRTGNEISQHT 729
E+ +IQ+ +L + + + D++ +L ++T E
Sbjct: 377 NELQERYEDEKDRLRNEIQNLAEKLLSLEKSSHEDQERSGDLEKELRKLTHVAGESQGSL 436
Query: 730 ESNEERALIQSTILSFTEQMQQI 752
+ Q +++F+E++ Q+
Sbjct: 437 NA------AQDELVTFSEELAQL 453
>gnl|CDD|181971 PRK09586, murP, PTS system N-acetylmuramic acid transporter
subunits EIIBC; Reviewed.
Length = 476
Score = 33.1 bits (76), Expect = 0.62
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 341 KQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVK 394
K ++ + + S + Q VL P KA N L P++ L + A Q K
Sbjct: 48 KTIEGVKGVILSDDQVQVVLGPGKAQRAAKAMNELLGEAAAPVQDLAEIAAQNK 101
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 33.1 bits (76), Expect = 0.67
Identities = 36/215 (16%), Positives = 85/215 (39%), Gaps = 29/215 (13%)
Query: 165 SSPLESAHPPVPDREIAIRLR------------LEDQIEQVESKLSQLNEAEAGLEGEEK 212
P VP + + L +E+ +E +E ++++L E L+ E+
Sbjct: 53 PLKDTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKS 112
Query: 213 LKAEVLAWIDDQKSLITDWEK----KPCKI----------KAESAQAEIAKMQDLKGVVL 258
E L + + +L D++ + K+ K E+ + E+ + +G +
Sbjct: 113 FLDENLEELSELSNLDIDFKYLRGAEGLKLGFVAGVINREKLEAFERELWRA--CRGYIR 170
Query: 259 QKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKADVNELDKQLDAISLIEGTINQA 318
Q + E LED + + D +K+++S+ ++ ++ + S + +N+
Sbjct: 171 QAEIEEPLEDPKKTVFIIFFVGKEDLDKVKKILDSFGFELYDVPETEGERSELISKVNKR 230
Query: 319 IGKKDSQQKVIESYKADVND-LDKQLDAISKKLDS 352
I + + ES+ V + +L A +++
Sbjct: 231 IEELQRVLEQTESHLEKVLVKIADELLAWDEQVSK 265
>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated.
Length = 343
Score = 33.0 bits (76), Expect = 0.69
Identities = 24/114 (21%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 241 ESAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKADVNE 300
+ ++IA++ DL L++Q L+D +A L ++ A ++ Q ++
Sbjct: 56 DRLNSQIAELADLLS--LERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAA 113
Query: 301 LDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVE 354
+ + G + Q + DS+++V A V L++Q+ A+ ++L ++E
Sbjct: 114 AEGR-------AGELAQEL---DSEKQVSARALAQVELLNQQIAALRRQLAALE 157
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This
model describes the DndB protein encoded by an operon
associated with a sulfur-containing modification to DNA.
The operon is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndD is described
as a putative ATPase. The small number of examples known
so far include species from among the Firmicutes,
Actinomycetes, Proteobacteria, and Cyanobacteria [DNA
metabolism, Restriction/modification].
Length = 650
Score = 32.3 bits (74), Expect = 1.1
Identities = 74/372 (19%), Positives = 139/372 (37%), Gaps = 64/372 (17%)
Query: 412 DEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLLLLREQFTTLIMQIVGF 471
+++ ++K+ + D+ L + D E I +L L F
Sbjct: 117 EKLTVYKDDEEDDSLNDIWD---------EFINELLPLELADLFF--------------F 153
Query: 472 ITETTARVGEVDGNSATVQEKIDKY---DKENQSEIDMLNDVWKEIKPKADQESDQLIED 528
E + D ++ ++E I+ D ++ D+ N + + K + I
Sbjct: 154 DGEKIEALANPDRLASLLKEAIEVLLGLDLIDRLAGDLTNVLRRRKKSELPSS----ILS 209
Query: 529 QIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHS 588
+IE L +L + EK +LA++ L + ++R+L+ +E G
Sbjct: 210 EIE-------ALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGD--- 259
Query: 589 LAVLTQNKSELESLLGTVESEKPKVS-QISTLAAPIVKFL--------KKDGLDLQKRIT 639
L + + +LE L +E+ + Q+ LAA + L K L +++
Sbjct: 260 ---LFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQ 316
Query: 640 ALELLSEELNSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQ--DAEAKIQ---DRTLPP 694
+L EEL EE+ KE+ ++ A V++I L D A L
Sbjct: 317 QNQLTQEEL----EERDKELLESLPKLALPAEHVKEIAAELAEIDKPATTDSEIPHRLSG 372
Query: 695 QTLIQF---IQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQ 751
L Q IQQ++ EL D K +L + R E + + I E++ +
Sbjct: 373 SELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGE 432
Query: 752 IEMKLNERKKEV 763
+ +L + E+
Sbjct: 433 AQNELFRSEAEI 444
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 32.2 bits (74), Expect = 1.3
Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 11/122 (9%)
Query: 639 TALELLS--EELNSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQT 696
L LL + + E+ +++ +A A ++E L+D + TL +
Sbjct: 67 QTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEA----LKDDNDEETRETLSTLS 122
Query: 697 LIQFIQQLEGELIDMKDKLAQMTRTGNE-ISQHTESNEERALIQSTILSFTEQMQQIEMK 755
L Q +L L +++ + ++ +S T+ ERA Q+ + + ++++QQI
Sbjct: 123 LRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQP--ERA--QAALYANSQRLQQIRNL 178
Query: 756 LN 757
L
Sbjct: 179 LK 180
Score = 31.8 bits (73), Expect = 1.9
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Query: 299 NELDKQLDAISLIE-GTINQAIGKKDSQQ-----KVIESYKADVNDLDKQLDAISKKLDS 352
++ QLDA++ + + ++D +Q I+ K + L +QL KL
Sbjct: 39 ADVQAQLDALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQ 98
Query: 353 VEHGQGVLCPVKANTLKDISNTLEN----SLQTPLEQLQDKAGQVKALLSNLDAQFVDEQ 408
+ L +K + ++ TL L++ L Q D+ + L+ ++Q V Q
Sbjct: 99 AQAE---LEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQ 155
>gnl|CDD|113356 pfam04582, Reo_sigmaC, Reovirus sigma C capsid protein.
Length = 326
Score = 31.8 bits (72), Expect = 1.4
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 538 NTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKS 597
GDL E+LT L L + +S+ L + ++ + SL K+
Sbjct: 24 TINPGDLTPIYERLTNLESATASLSESVSTISSRLSDLSADLQ---DMTTSLD---DAKA 77
Query: 598 ELESLLGTVESEKPKVSQIST 618
L L+ TV++ + V +S+
Sbjct: 78 TLNGLITTVQALQTSVDSLSS 98
>gnl|CDD|234541 TIGR04320, Surf_Exclu_PgrA, SEC10/PgrA surface exclusion domain.
This model describes a conserved domain found in surface
proteins of a number of Firmutes. Many members have
LPXTG C-terminal anchoring motifs and a substantial
number have the KxYKxGKxW putative sorting signal at the
N-terminus. The tetracycline resistance plasmid pCF10 in
Enterococcus faecalis promotes conjugal plasmid transfer
in response to sex pheromones, but PgrA/Sec10 encoded by
that plasmid, a member of this family, specifically
inhibits the ability of cells to receive homologous
plasmids. The phenomenon is called surface exclusion.
Length = 356
Score = 32.0 bits (73), Expect = 1.5
Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 23/135 (17%)
Query: 292 ESYKADVNELDKQL-----DAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAI 346
+SY AD N+ DK +++ ++ + A + Q + + +A + A
Sbjct: 235 DSYIADGNKFDKTPIPNTPNSLKALQAALATAQADLAAAQTALNTAQAALTTAQTAYAAA 294
Query: 347 SKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVD 406
L + + L N+ L+ Q+ +A L+N +A+
Sbjct: 295 QAALATAQ------------------KELANAQAQALQTAQNNLATAQAALANAEARLAK 336
Query: 407 EQKLLDEINLWKNSQ 421
++ L +N +
Sbjct: 337 AKEALANLNADLAKK 351
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 31.9 bits (72), Expect = 1.7
Identities = 55/355 (15%), Positives = 125/355 (35%), Gaps = 32/355 (9%)
Query: 444 ENNAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYD---KEN 500
E+N P + L L E+F +I + + + E + + +KI +
Sbjct: 248 EDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRAL 307
Query: 501 QSEIDMLNDVWKEIKPKADQESDQL--IEDQIERINDQWNTLVGDLDTRREKLTELAEQW 558
+S+ + + +K K+ + +L ++ +IE ++ L ++D ++L +
Sbjct: 308 KSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGIST 367
Query: 559 EQLEKLMSSSE---RTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVSQ 615
EQ E + E R L + ++ V S + Q +SL T+ +
Sbjct: 368 EQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGI--FKSLEKTLRQYDSLIQN 425
Query: 616 ISTLAAPIVKFLK------------KDGLDLQKRITALELLSEELNSKLEEKGKEVQKAK 663
I+ + I + G + + I ELN +++E+ K +
Sbjct: 426 ITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSI---LELNDEIQERIKTEENKS 482
Query: 664 AMRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQLEGELIDMKDKLAQMTRTGN 723
+ +++ L K++ + + ++ + + ++ +
Sbjct: 483 ITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQR--IEIEKLEK 540
Query: 724 EISQ-----HTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHF 773
E++ T + L+QST + E + K + K+V D F
Sbjct: 541 ELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIHVIDITSKF 595
>gnl|CDD|187705 cd09767, Csx17_I-U, CRISPR/Cas system-associated protein Csx17.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins; Predicted subunit of the Cascade
complex;.
Length = 652
Score = 32.0 bits (73), Expect = 1.8
Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 19/135 (14%)
Query: 50 DELLTWLTRARDKIPSMKQKSLSDKLAIENIVAPLESLLNKKAQG------ELLVEHMQT 103
+EL WL R R ++ + ++ S A+ I E++ G +LLV Q
Sbjct: 366 NELDRWLDRLRFRLRAPRKPPPSALSALRPI---EEAIFEFCQHGSPTKFQDLLVALGQL 422
Query: 104 TGEVVLASTSPDGQTAVKNEMKALNMKMHWIDLLNKLEHEKNRLGAAIQAGEAATACISR 163
E LA ++ V + L+ WI+ + L E R+ AA+ A+
Sbjct: 423 --ERQLALSAAKSGRRVTRPLPGLS--PDWIEAADDLSPE-FRIAAAL-----ASIRDGG 472
Query: 164 PSSPLESAHPPVPDR 178
S P +R
Sbjct: 473 KKGDRTSLGPAPINR 487
>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1). The
homeobox gene Prox1 is expressed in a subpopulation of
endothelial cells that, after budding from veins, gives
rise to the mammalian lymphatic system. Prox1 has been
found to be an early specific marker for the developing
liver and pancreas in the mammalian foregut endoderm.
This family contains an atypical homeobox domain.
Length = 908
Score = 32.0 bits (72), Expect = 1.8
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 519 DQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSE 569
Q DQL+ + E+ ++ L L +++L +L +++ Q+ S
Sbjct: 283 QQSFDQLVSPRKEQKREERRQLKQQLRDMQKQLRQLQQKYVQIYDSTDDST 333
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids.
Length = 338
Score = 31.4 bits (72), Expect = 1.9
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 118 TAVKNEMKALNMKMHWIDLLNKLEHEKNRLGAAIQAGEAATACISR 163
T +K+ + N K++WI E KNR G ++ CISR
Sbjct: 158 TKIKDRLLEANDKVNWIP-----EWVKNRFGNWLE--NRRDWCISR 196
>gnl|CDD|224380 COG1463, Ttg2C, ABC-type transport system involved in resistance to
organic solvents, periplasmic component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 359
Score = 31.3 bits (71), Expect = 2.0
Identities = 24/155 (15%), Positives = 52/155 (33%), Gaps = 12/155 (7%)
Query: 258 LQKQTEGLLEDQLAELITLINQAI-GKKDSQQKVIESYKADVNELDKQLDAISLIEGTIN 316
L GL D+L ++ A+ G ++++ + L+ + I + +N
Sbjct: 148 LLLLLGGLDPDRLNAILNEAAAALAGTGPQLNALLDNLAQFTDALNARDGDIGALIANLN 207
Query: 317 QAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLE 376
Q + + ++ ++ L L A LD L ++ T+
Sbjct: 208 QLLDSLAAASDQLDRLLDNLATLTAALAARRDALDDA-----------LAALSALAATVN 256
Query: 377 NSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLL 411
+ L L ++ L + L ++LL
Sbjct: 257 DLLAENRPNLNQALANLRPLATLLVDYLPGLEQLL 291
>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5
subunit [Transcription].
Length = 548
Score = 31.6 bits (71), Expect = 2.2
Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 27/148 (18%)
Query: 385 QLQDKAGQVKALLSNLDAQFVDEQKLLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIE 444
Q D + + L S+L + QK D+I W + + +D L + + ++ +ER +
Sbjct: 22 QSTDNSSHREKLESDLKREIKKLQKHRDQIKTWLSKEDVKDKQVLMTNRRLIENGMERFK 81
Query: 445 NNAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKENQSEI 504
+V KL M+ F E + T + ID + + + ++
Sbjct: 82 --SVEKL--------------MKTKQFSKE-----------ALTNPDIIDPKELKKRDQV 114
Query: 505 DMLNDVWKEIKPKADQESDQLIEDQIER 532
++D E++ + +Q Q E+Q ER
Sbjct: 115 LFIHDCLDELQKQLEQYEAQENEEQTER 142
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 1480
Score = 31.8 bits (72), Expect = 2.2
Identities = 24/108 (22%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 287 QQKVIESYKADVNELDKQLDAISLIEGTINQAIGKKDSQQKVIE----SYKADVNDLDKQ 342
QQ+ IE Y+AD+ EL +L+ + + N+ + +++ + E K+ + D +
Sbjct: 346 QQEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQA 405
Query: 343 LDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKA 390
LD ++ ++++ Q + +A L + + +S + LE Q K
Sbjct: 406 LDV--QQTRAIQYQQAIAALERAKELCHLPDLTADSAEEWLETFQAKE 451
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 31.4 bits (72), Expect = 2.4
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 632 LDLQKRITALELLSEELNSKLEEKGKEVQKAKA----MRAAYLTDVEKIGTWLQDAEAKI 687
L+L + L EEL ++ E KE+ +A + +V+++ L++ EA +
Sbjct: 32 LELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAAL 91
Query: 688 QDRTLPPQTLIQFIQQLEGELI 709
+ TL+ I + E +
Sbjct: 92 DELEAELDTLLLTIPNIPHESV 113
>gnl|CDD|215918 pfam00435, Spectrin, Spectrin repeat. Spectrin repeat-domains are
found in several proteins involved in cytoskeletal
structure. These include spectrin, alpha-actinin and
dystrophin. The sequence repeat used in this family is
taken from the structural repeat in reference. The
spectrin domain- repeat forms a three helix bundle. The
second helix is interrupted by proline in some
sequences. The repeats are defined by a characteristic
tryptophan (W) residue at position 17 in helix A and a
leucine (L) at 2 residues from the carboxyl end of helix
C. Although the domain occurs in ultiple repeats along
sequences, the domains are actually stable on their own
- ie they act, biophysically, like domains rather than
repeats that along function when aggregated.
Length = 105
Score = 29.2 bits (66), Expect = 2.6
Identities = 19/99 (19%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 669 YLTDVEKIGTWLQDAEAKIQDRTLPP-----QTLIQFIQQLEGELIDMKDKLAQMTRTGN 723
+ D + + +W+++ EA + Q L++ + LE EL +D++ +
Sbjct: 6 FFRDADDLESWIEEKEALLSSEDYGKDLESVQALLKKHKALEAELAAHQDRVEALNELAE 65
Query: 724 EISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKE 762
++ E + IQ + E+ +Q+ ERK++
Sbjct: 66 KLIA--EGHYASEEIQERLEELNERWEQLLELAAERKQK 102
>gnl|CDD|234953 PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.
Length = 476
Score = 31.2 bits (72), Expect = 2.8
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 402 AQFVDEQKLLDEINLWKNSQ--SDEDLAHLADSIKPLDEVVERIENNAVPKLKSLL-LLR 458
A+F D +KL W N + D LA+ + P E ++ P L+ ++ LL+
Sbjct: 310 ARF-DIKKLD-----WLNGHYIRELDPEELAELLLPWHLEQEGLDTEDGPYLEKVVPLLK 363
Query: 459 EQFTTL 464
E+ TL
Sbjct: 364 ERAKTL 369
>gnl|CDD|234000 TIGR02760, TraI_TIGR, conjugative transfer relaxase protein TraI.
This protein is a component of the relaxosome complex.
In the process of conjugative plasmid transfer the
realaxosome binds to the plasmid at the oriT (origin of
transfer) site. The relaxase protein TraI mediates the
single-strand nicking and ATP-dependent unwinding
(relaxation, helicase activity) of the plasmid molecule.
These two activities reside in separate domains of the
protein.
Length = 1960
Score = 31.0 bits (70), Expect = 3.1
Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 10/131 (7%)
Query: 638 ITALELLSEELNSKLEEKGKEVQKAKAMRAAYLTDVEKI----GTWLQDAEAKIQDRTLP 693
+TA ++++ ++EKG KA+ + AA T +K T ++ + + +D
Sbjct: 243 LTAFSKRRQQIDELVDEKGWSSAKARDI-AALDTRKDKTYIDDETLMEKWQQECKDMGFD 301
Query: 694 PQTLIQFIQQLEG-----ELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQ 748
P L+ + E D + +SQ++ E LI+ FT
Sbjct: 302 PHALVASSYKPENIVARFYGPSQIDAQHAVEVAIAHLSQYSTQFEYEKLIEEAAKYFTAG 361
Query: 749 MQQIEMKLNER 759
+ I+ ++
Sbjct: 362 NKIIDEIDIKK 372
>gnl|CDD|236270 PRK08471, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 613
Score = 30.8 bits (70), Expect = 3.3
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 322 KDSQQKVIESYKA---DVNDLDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENS 378
Q+KV E K ++N L KQ+ I+K++ VE G+ + AN L+D + LE +
Sbjct: 156 DTLQKKVNEELKVTVDEINSLGKQIAEINKQIKEVEAGKTL---KHANELRDKRDELELT 212
Query: 379 LQT 381
L
Sbjct: 213 LSK 215
>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA;
Provisional.
Length = 569
Score = 31.0 bits (71), Expect = 3.6
Identities = 74/429 (17%), Positives = 161/429 (37%), Gaps = 79/429 (18%)
Query: 185 RLEDQIEQVESKLSQLNEAEAGL-EGEEKLKAEVLAWIDDQKSLITDWEKKPCKIKAESA 243
+E ++ +E + Q+ E L E EEK + EV K
Sbjct: 109 EIESLLDLIEEDIEQILEELQELLESEEKNREEVEQ----------------LKDLYREL 152
Query: 244 QAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDS-----QQKVIESYKADV 298
+ + + G L + LE QL L +Q + +S +++++ + ++
Sbjct: 153 RKSLLANRFSFGPALDE-----LEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEEL 207
Query: 299 NELDKQLDAISLIEGTINQAIGK-----KDSQQKVIES-YKADVNDLDKQLDAISKKLDS 352
L++ ++ I + + + K ++++E Y D D++K++ + +++D
Sbjct: 208 AALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDE 267
Query: 353 VEHGQGVLCPVKANT-LKDIS---NTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQ 408
L +A ++I + L + L+ ++ + L L+ +
Sbjct: 268 NLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNK 327
Query: 409 KLLDEINLWKNSQ--SDEDLAH-------LADSIKPLDEVVERIENNAVP------KLKS 453
+L +EI+ K S ++ +L L K DE+ ERI + +L+
Sbjct: 328 ELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEE 387
Query: 454 LLLLREQFTTLIMQIVGFITETTA-RVGEVDGNSATVQEKIDKYDKE------------- 499
+L +Q + + R E +EK+++Y +
Sbjct: 388 IL---KQLEEIEKEQEKLSEMLQGLRKDE-----LEAREKLERYRNKLHEIKRYLEKSNL 439
Query: 500 ---NQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAE 556
+ ++M +V EI+ A++ ++ I +E +N D++T E+ EL E
Sbjct: 440 PGLPEDYLEMFFEVSDEIEALAEELEEKPIN--MEAVNRLLEEATEDVETLEEETEELVE 497
Query: 557 QWEQLEKLM 565
E+L+
Sbjct: 498 NATLTEQLI 506
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 30.8 bits (69), Expect = 3.8
Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 5/163 (3%)
Query: 189 QIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCKIKAESAQAEIA 248
Q++ + +L L E G EK AE + E++ + + +A+ +A
Sbjct: 75 QLDDIRPQLRALRT-ELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLA 133
Query: 249 K-MQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKADVNELDKQLDA 307
K Q+L + Q Q L+ +L L Q + S Q + +A +L Q+
Sbjct: 134 KAQQELARLTKQAQD---LQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLD 190
Query: 308 ISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKL 350
+ L I Q ++ ++ ++ ++ +
Sbjct: 191 LKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAI 233
>gnl|CDD|168831 PRK07122, PRK07122, RNA polymerase sigma factor SigF; Reviewed.
Length = 264
Score = 30.1 bits (68), Expect = 3.8
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 420 SQSDEDLAHLADSIKPLDEVVERIENN-AVPKLKSLLLLREQFTTLIMQIVGFITET--T 476
D+D +AD++ +D +++IEN A+ L + L RE+ T L+++ +T+T
Sbjct: 180 GSGDDDARAIADTLGDVDAGLDQIENREALRPLLAALPERER-TVLVLRFFESMTQTQIA 238
Query: 477 ARVG 480
RVG
Sbjct: 239 ERVG 242
>gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional.
Length = 473
Score = 30.7 bits (70), Expect = 3.9
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 637 RITALELLSEELNSKLEEKGKEVQKAKAMRAAYLTDVEKIG-TWLQDA 683
RI AL LL L +Q +AA V K+G T LQDA
Sbjct: 150 RIAALNLLE-----GLLAAMGALQDVFEEKAAEFDHVIKMGRTQLQDA 192
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 30.6 bits (70), Expect = 4.3
Identities = 46/230 (20%), Positives = 100/230 (43%), Gaps = 29/230 (12%)
Query: 102 QTTGEVVLASTSPDGQTAVKNEMKALNMK--MHWIDLLNKLEHEKNRLGAAIQAG---EA 156
+T+ E+ + S + K + L+++ ID+LN + ++ Q E
Sbjct: 296 KTSPELEILDESTENDELFKELSEKLDIERLYRMIDILNDAQ---QQIKWTNQPRIYLEV 352
Query: 157 ATACISRPSSPLESAHPPVPDREIAIRLRLEDQIEQVESKLSQLNEAEAGLEGEEKLKAE 216
A + ++ P D E+ + L ++EQ+E +L QL G+ E+K K +
Sbjct: 353 ALVKLCEQAAA-----SPEYDTELEV---LLQRVEQLEQELKQLKAQPVGVAPEQKEKKK 404
Query: 217 VLAWIDDQKSLITDWEKKPCKIKAESAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITL 276
+K + K K+ E+ + ++ ++++ G +L+ L+ Q L L
Sbjct: 405 EKKKNKKKKYKVP--RGKIYKVLKEATRQDLELLKNVWGEILES-----LKAQRKSLRAL 457
Query: 277 INQAIGKKDSQQKVIESYKADVN----ELDKQLDAISLIEGTINQAIGKK 322
+ + S+ V+ +++ +++ LDK+L IE +++ +GK
Sbjct: 458 LVNSEPVAASEDTVVLAFEYEIHFEKAMLDKEL--NDTIENILSKLLGKS 505
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 29.6 bits (67), Expect = 4.5
Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 516 PKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGV 575
P+ QE +L ++++ + +Q L + +++L+ L + E+L+K ++ ++
Sbjct: 69 PELQQELAEL-QEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANA 127
Query: 576 ETSVEQCDGVVHSLAVLTQNKSELES 601
E+ + LA L Q LE+
Sbjct: 128 IELDEENRELREELAELKQENEALEA 153
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 30.4 bits (69), Expect = 4.5
Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 16/118 (13%)
Query: 183 RLRLEDQIEQVESKLSQLNEAEAGLEGE-----------EKLKAEVLAWIDDQKSLITDW 231
+LE+++E+ E +L +L +A L + E+ V I
Sbjct: 295 LKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEEGLKSVRLADFYGNEEIKI- 353
Query: 232 EKKPCKIKAESAQAEIAKMQDLKG--VVLQKQTEGLLE--DQLAELITLINQAIGKKD 285
E K +E+AQ K + LKG V L +Q L E T + +A GKK
Sbjct: 354 ELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKA 411
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 30.6 bits (69), Expect = 4.6
Identities = 37/225 (16%), Positives = 82/225 (36%), Gaps = 19/225 (8%)
Query: 489 VQEKIDKYDKENQSEIDMLNDVWK-----EIKPKADQESDQLIEDQIERINDQWNTLVGD 543
++EKI+ N + + +E+ Q I D N + +
Sbjct: 388 LKEKIETLLDSEYFISKYTNIISLSEHTLKAAEDVLKENSQKIADYALYSNLEIIEIKKK 447
Query: 544 LDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLL 603
D EK+ EL + QL+ L+S + + + + D + + + +++ LL
Sbjct: 448 YD---EKINELKKSINQLKTLISIMKSFYDLIISEKDSMDSKEKKESSDSNYQEKVDELL 504
Query: 604 GTVESEKPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEELN---SKLEEKGKEVQ 660
+ S K K + ++ I + I L+ E L + + +
Sbjct: 505 QIINSIKEKNNIVNNNFKNIEDYYIT--------IEGLKNEIEGLIELIKYYLQSIETLI 556
Query: 661 KAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQLE 705
K + ++ + D++ ++++ I+D + IQQ+E
Sbjct: 557 KDEKLKRSMKNDIKNKIKYIEENVDHIKDIISLNDEIDNIIQQIE 601
Score = 29.8 bits (67), Expect = 9.4
Identities = 47/261 (18%), Positives = 101/261 (38%), Gaps = 15/261 (5%)
Query: 366 NTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLDEINLWKNSQSD-- 423
N KD + L N + + + ++K +K S L + + L N K+ S+
Sbjct: 2345 NYGKDKNIELNNENNSYIIKTKEKINNLKEEFSKL-LKNIKRNNTLCNNNNIKDFISNIG 2403
Query: 424 ---EDLAHLADSIKPLDEVVERIEN--NAVPKLKSLLLLREQFTTLIMQIVGFITETTAR 478
E + S P E + +IE N + + + +I+ I +
Sbjct: 2404 KSVETIKQRFSSNLPEKEKLHQIEENLNEIKNIMNETKRISNVDAFTNKILQDIDNEKNK 2463
Query: 479 VGEVDGNSA--TVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQ 536
+ E + ++++ +SE+ ++ND + +K K E ++L E N+
Sbjct: 2464 ENNNMNAEKIDDLIENVTSHNEKIKSELLIINDALRRVKEKK-DEMNKLFNSLTENNNNN 2522
Query: 537 WNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNK 596
N+ +D + EL +L +L+S + +K +E + + A + +++
Sbjct: 2523 NNSAKNIVDNSTYIINELESHVSKLNELLSYIDNEIKELENEKLK----LLEKAKIEESR 2578
Query: 597 SELESLLGTVESEKPKVSQIS 617
E E + + + QI+
Sbjct: 2579 KERERIESETQEDNTDEEQIN 2599
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 30.3 bits (68), Expect = 5.2
Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 9/174 (5%)
Query: 185 RLEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCKIKAESAQ 244
+ VE + N + LE +++ A AW DQ L T+ K +
Sbjct: 311 SVATIKSGVEDYFPEANLTKIALERLDEI-ACTEAW-KDQTDLDTENLKNIIETLRSKRL 368
Query: 245 AEIAKMQDLKGVVLQKQTEGLLEDQ---LAELITLINQAIGKKDSQQKVIESYKADVNEL 301
A AKM D + + +D+ + +LI N + + + K E K E
Sbjct: 369 ANQAKMLDKSKEMSRNFKLDSTKDEIDAIKDLIKKANAQVVNHNERIKNFEKQKKSSKE- 427
Query: 302 DKQLDAISLIEGTIN-QAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVE 354
QL+ + E + Q K +K I + + ++ + +++ +S ++ +E
Sbjct: 428 --QLEKFLVNEFKSDVQEYNKYCGLEKKINNLEKEIKNNQEEVKKLSNEIKEIE 479
>gnl|CDD|165311 PHA03011, PHA03011, hypothetical protein; Provisional.
Length = 120
Score = 28.8 bits (64), Expect = 5.3
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 362 PVKANTLKDISNTLENSLQTPLEQLQD-KAGQVKALLSNLDAQFVDEQKLLDEINLWKNS 420
P ++N L + +L EQ+ D K G + A++ LD +LLDE NL +N
Sbjct: 27 PYESNILNKFDDEYLANLIFEPEQIFDFKEGDINAIIEILDELIAQYNELLDEYNLIENE 86
Query: 421 QSD------EDLAHLADSIKPLDEVVERIENNAV 448
D ++ + +D++ E I N ++
Sbjct: 87 IKDLEIIIQDNDDEIHFLRAEIDKLKENIANLSI 120
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 30.0 bits (68), Expect = 5.4
Identities = 16/126 (12%), Positives = 44/126 (34%), Gaps = 18/126 (14%)
Query: 295 KADVNELDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVE 354
++ L+ + + + + + + + +E D +LD+ + + K L +
Sbjct: 164 MKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDC--DPTELDRAKEKLKKLLQEIM 221
Query: 355 HGQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLDEI 414
I L+ L++L+ K + S L+ + + +K L++
Sbjct: 222 ----------------IKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQC 265
Query: 415 NLWKNS 420
+
Sbjct: 266 RGFTFK 271
>gnl|CDD|235903 PRK06991, PRK06991, ferredoxin; Provisional.
Length = 270
Score = 29.8 bits (67), Expect = 5.5
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 143 EKNRLGAAIQAGEAATACISRPSSPLESAHPPVPDREIAIRLRLEDQIEQVESKLSQLNE 202
AA A AA A + +A P D E R + +E+ K +L
Sbjct: 172 AAEARAAARAAASAAAA----AAEASAAAAPAADDAEAKKRAIIAAALERARKKKEELAA 227
Query: 203 AEAGLEGEEKLKAEVLAWID 222
AG + E + A V A ID
Sbjct: 228 QGAGPKNTEGVSAAVQAQID 247
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 29.7 bits (67), Expect = 8.3
Identities = 22/185 (11%), Positives = 57/185 (30%), Gaps = 9/185 (4%)
Query: 588 SLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEE 647
S A + +++ + +E + + +K L+ + L+ ++ ++
Sbjct: 32 SAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKK 91
Query: 648 LNSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQ-------DAEAKIQDRTLPPQTLIQF 700
L ++ + + + + + LQ A + L +
Sbjct: 92 LRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIY 151
Query: 701 IQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERK 760
L + D L + + E+A + + + Q ++ L ERK
Sbjct: 152 YGALNPARAERIDALKATLKQLAAVRAEIA--AEQAELTTLLSEQRAQQAKLAQLLEERK 209
Query: 761 KEVTG 765
K +
Sbjct: 210 KTLAQ 214
>gnl|CDD|133398 cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy
Metal Resistance transcription regulators.
Helix-turn-helix (HTH) heavy metal resistance
transcription regulators (HMRTR): MerR1 (mercury), CueR
(copper), CadR (cadmium), PbrR (lead), ZntR (zinc),
and other related proteins. These transcription
regulators mediate responses to heavy metal stress in
eubacteria. They belong to the MerR superfamily of
transcription regulators that promote transcription of
various stress regulons by reconfiguring the operator
sequence located between the -35 and -10 promoter
elements. A typical MerR regulator is comprised of two
distinct domains that harbor the regulatory
(effector-binding) site and the active (DNA-binding)
site. Their N-terminal domains are homologous and
contain a DNA-binding winged HTH motif, while the
C-terminal domains are often dissimilar and bind
specific coactivator molecules such as metal ions,
drugs, and organic substrates.
Length = 123
Score = 28.3 bits (64), Expect = 8.5
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 169 ESAHPPVPDREIAIRLRLEDQIEQVESKLSQLNEAEAGLEG 209
+ P + +R LE+++ +VE+K+++L A L G
Sbjct: 71 DDGAAPCAE----VRALLEEKLAEVEAKIAELQALRAELAG 107
>gnl|CDD|238566 cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These
proteins have been shown to function as initial
receptors in ABC transport of Fe3+-siderophores in many
eubacterial species. They belong to the TroA-like
superfamily of helical backbone metal receptor proteins
that share a distinct fold and ligand binding mechanism.
A typical TroA-like protein is comprised of two
globular subdomains connected by a long alpha helix and
binds its specific ligands in the cleft between these
domains.
Length = 256
Score = 29.2 bits (66), Expect = 9.2
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 272 ELITLINQAIGKKDSQQKVIESYKADVNELDKQLDAIS 309
E + LI +A+GK++ +K++ Y + EL ++L
Sbjct: 103 ENLRLIAKALGKEEEAEKLLAEYDQRLAELRQKLPDKG 140
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.127 0.339
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,370,042
Number of extensions: 4117715
Number of successful extensions: 5577
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5078
Number of HSP's successfully gapped: 452
Length of query: 849
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 744
Effective length of database: 6,280,432
Effective search space: 4672641408
Effective search space used: 4672641408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (27.9 bits)