RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4475
(849 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 99.2 bits (246), Expect = 2e-21
Identities = 95/651 (14%), Positives = 212/651 (32%), Gaps = 129/651 (19%)
Query: 60 RDKIPSMKQKSLSDKLAIENIVAPLESLLNKKAQGELLVEHMQTTGEVVLASTSPD-GQT 118
+D + + + + +++ +S+L+K+ +++ +G + L T +
Sbjct: 19 KDILSVFEDAFVDN-FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 119 AVKNEMK-ALNMKMHWIDLLNKLEHEKNRLGAAIQAGEAATACISRPSSPLESAHPPVPD 177
V+ ++ L + + L++ ++ E+ T L + +
Sbjct: 78 MVQKFVEEVLRINYKF--LMSPIKTEQR-------QPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 178 REIAIRLRLEDQIEQVESKLSQLNEAEA----GLEGEEK--LKAEVLAWIDDQKSLITDW 231
++ RL+ ++ L +L A+ G+ G K + +V K
Sbjct: 129 YNVS---RLQ-PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL---SYKVQ---- 177
Query: 232 EKKPCKI------KAESAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKD 285
K KI S + + +Q L + T D + + I+ +
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS--RSDHSSNIKLRIHSIQAELR 235
Query: 286 SQQKVIESYK------ADVNELDKQ-LDAISLIEGTINQAIGKKDSQQKV-IESYKADVN 337
K + Y+ +V + + +A + K+ + + V
Sbjct: 236 RLLK-SKPYENCLLVLLNVQ--NAKAWNAF--------------NLSCKILLTTRFKQVT 278
Query: 338 DLDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALL 397
D L A + S++H L P + +L L L + L +
Sbjct: 279 D---FLSAATTTHISLDHHSMTLTPDEVKSL------LLKYLDCRPQDLPREVLTTNPRR 329
Query: 398 SNLDAQFVDEQKLLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLLLL 457
++ A+ + + L + WK+ D+ + S+ L+ R L +
Sbjct: 330 LSIIAESIRDG--LATWDNWKHVNCDKLTTIIESSLNVLEPAEYR------KMFDRLSVF 381
Query: 458 RE--QFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIK 515
T+++ + + V N ++K KE+ I ++ E+K
Sbjct: 382 PPSAHIPTILLSL--IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI---PSIYLELK 436
Query: 516 PKADQESD---QLIE-DQIERINDQWNTLVGDLDT-------RREKLTELAEQWEQLEKL 564
K + E +++ I + D + + LD K E E+ +
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 565 ---MSSSERTLKGVETSVEQCDGVVHSLAVL-------TQNKSELESLLGTVESEKPKVS 614
E+ ++ T+ ++++L L N + E L+
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA--------- 547
Query: 615 QISTLAAPIVKFLKKDGLDL----QKRITALELLSEELNSKLEEKGKEVQK 661
I+ FL K +L + + L++E+ + EE K+VQ+
Sbjct: 548 --------ILDFLPKIEENLICSKYTDLLRIALMAED-EAIFEEAHKQVQR 589
Score = 86.8 bits (214), Expect = 2e-17
Identities = 91/624 (14%), Positives = 200/624 (32%), Gaps = 136/624 (21%)
Query: 297 DVNELD-KQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVEH 355
+ E + D +S+ E A + K ++ + +++D I D+V
Sbjct: 10 ETGEHQYQYKDILSVFE----DAF-VDNFDCKDVQDMPKSILS-KEEIDHIIMSKDAVSG 63
Query: 356 GQ---GVLCPVKANTLKDISNTLENS----LQTPL-EQLQDKAGQVKALLSNLDAQFVDE 407
L + ++ + L +P+ + + + + + D
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD------ 117
Query: 408 QKLLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLLL-LR-EQFTTLI 465
L+ ++Q + V R++ KL+ LL LR + +
Sbjct: 118 -------RLYNDNQV----------FAKYN--VSRLQ--PYLKLRQALLELRPAKNVLID 156
Query: 466 -MQIVGFITETTARVGEVDGNSATVQEKID--------KYDKENQSEIDMLNDVWKEIKP 516
+ G T +V S VQ K+D K ++ ++ML + +I P
Sbjct: 157 GVLGSG----KTWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 517 KADQESDQL--IEDQIERINDQWNTLVGDLDTRREKLTELAEQW--EQLEK-------LM 565
SD I+ +I I + L+ L L + L+
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-LLVLLNVQNAKAWNAFNLSCKILL 270
Query: 566 SSSERT----LKGVETSVEQCDGVVHSLAVLTQNKSE--LESLLGTVESEKPK-VSQIST 618
++ + L T+ + H LT ++ + L L + P+ V +
Sbjct: 271 TTRFKQVTDFLSAATTTHIS---LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 619 LAAPIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQKAKAMRAAYLTDVEKIGT 678
I+ +DGL + ++L + + E V + R + +++
Sbjct: 328 RRLSIIAESIRDGLATWDNW--KHVNCDKLTTII-ESSLNVLEPAEYRKMF----DRLSV 380
Query: 679 WLQDAEAKIQDRTLPPQTL-IQFIQQLEGELIDMKDKLAQMT---RTGNE--ISQH---- 728
+ A I P L + + ++ +++ + +KL + + + E IS
Sbjct: 381 FPPS--AHI-----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 729 ---TESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVM---- 781
+ E AL +S + + I + D + + H + +
Sbjct: 434 ELKVKLENEYALHRSIVDHY-----NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 782 ------------KWVSEK-RTFLSEPYDSNNLSDLRVKLNSYTE-LTSFVNKHTRKVKDL 827
+++ +K R + S ++ + +L Y + K+ R V +
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Query: 828 SK---NTQEAYVSSQGVVPADLVQ 848
+E + S+ DL++
Sbjct: 549 LDFLPKIEENLICSKY---TDLLR 569
Score = 50.6 bits (120), Expect = 2e-06
Identities = 82/558 (14%), Positives = 155/558 (27%), Gaps = 210/558 (37%)
Query: 1 MLASGQQSQAA------------------------TQAKQILDQFDTLLGKVKSLLADRE 36
+L SG+ A + +L+ LL ++ R
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 37 DQYKDHRVYKEACDELLTWLTRARDKIPSMKQKSLSDKLAIENIVAPLESLLNKKA---- 92
D + K + L R +K K + L + L ++ N KA
Sbjct: 218 DHSSN---IKLRIHSIQAELRRL------LKSKPYENCLLV------LLNVQNAKAWNAF 262
Query: 93 --QGELLVEHMQTTGEV-VLASTSPDGQTAV----------KNEMKALNMKMHWIDLLNK 139
++L+ TT V S T + +E+K+L LL
Sbjct: 263 NLSCKILL----TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL--------LLKY 310
Query: 140 LEHEKNRLGAAIQAGEAATACISRPSSPL------ESAHPPVPDREIAIRLRLEDQIEQV 193
L+ L + +P ES + D++ +
Sbjct: 311 LDCRPQDLPREVLTT-----------NPRRLSIIAESIRDG-LATWDNWKHVNCDKLTTI 358
Query: 194 -ESKLSQLNEAE--------AGLEGEEKLKAEVLA--WIDDQKSLITDWEKKPCKIKAES 242
ES L+ L AE + + +L+ W D K
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK----------------- 401
Query: 243 AQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKADVNELD 302
D + + L ++ +K ++ I
Sbjct: 402 ------------------------SDVMVVVNKLHKYSLVEKQPKESTISIP-------S 430
Query: 303 KQLDAISLIEGTINQAIGKKDSQQKVIESYKA----DVNDLDKQLDAISKKLDS------ 352
L+ +E + + +++ Y D +DL LD
Sbjct: 431 IYLELKVKLE-------NEYALHRSIVDHYNIPKTFDSDDLIPP------YLDQYFYSHI 477
Query: 353 VEHGQGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLD 412
H LK+I + ++ + + LD +F+ EQK+
Sbjct: 478 GHH------------LKNIEHP-------------ERMTLFRMVF--LDFRFL-EQKIRH 509
Query: 413 EINLWKNSQSDEDL--------AHLADSIKPLDEVVERIENNAVPKLKSLLLLREQFTTL 464
+ W S S + ++ D+ + +V I + +PK++ L+ ++T L
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF-LPKIEE-NLICSKYTDL 567
Query: 465 I----MQIVGFITETTAR 478
+ M I E +
Sbjct: 568 LRIALMAEDEAIFEEAHK 585
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.5 bits (159), Expect = 8e-11
Identities = 92/558 (16%), Positives = 180/558 (32%), Gaps = 169/558 (30%)
Query: 343 LDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTP------LEQLQDKAGQVKAL 396
+DA S + ++ HG +LE+ L P QLQ+ Q +
Sbjct: 1 MDAYSTRPLTLSHG-----------------SLEHVLLVPTASFFIASQLQE---QFNKI 40
Query: 397 LSNLDAQFVDEQKLLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLL- 455
L F + + L + L +++ +E + V + +L
Sbjct: 41 LPEPTEGFAADDEPTTPAELVG-----KFLGYVSS----------LVEPSKVGQFDQVLN 85
Query: 456 -LLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDK-----YDKENQSEIDMLND 509
L E F ++ G + A ++ + T K + ++
Sbjct: 86 LCLTE-FENCYLE--G--NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK------ 134
Query: 510 VWKEIKPKADQESDQLIEDQIERINDQWNTLV------GDLDTRREKLTELAEQWE---- 559
+P + + L + + LV G+ D EL + ++
Sbjct: 135 -----RPFDKKSNSALFRA----VGEGNAQLVAIFGGQGNTDDY---FEELRDLYQTYHV 182
Query: 560 QLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVSQISTL 619
+ L+ S TL + + + V + + + L + P + +
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAE-KVFTQGL------NILEWLENPSN-TPDKDYLLS- 233
Query: 620 AAPI-VKFLKKDGLDLQK---RITA--LELLSEELNSKLE---EKGKEVQKAKAMRAA-- 668
PI + G+ +Q +TA L EL S L+ + + A A+
Sbjct: 234 -IPISCPLI---GV-IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 669 ---YLTDVEKIGTWL-------QDAEAKIQDRTLPPQTLIQFIQQLEGELIDM---KD-K 714
+ V K T L +A + +LPP L ++ EG M +
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEA---YPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 715 LAQMTRTGNEISQHTESNE--ERALI---QSTILS--------FTEQMQ---------QI 752
Q+ N+ + H + + E +L+ ++ ++S ++ Q
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 753 EMKLNERKKEVTGCDDAWKHFLSL----HAEVMKWVSE-------KRTF------LSEP- 794
+ +ERK + + FL + H+ ++ S+ K + P
Sbjct: 406 RIPFSERKLKFSNR------FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 795 YDSNNLSDLRVKLNSYTE 812
YD+ + SDLRV S +E
Sbjct: 460 YDTFDGSDLRVLSGSISE 477
Score = 58.1 bits (140), Expect = 1e-08
Identities = 62/421 (14%), Positives = 122/421 (28%), Gaps = 146/421 (34%)
Query: 507 LNDVWKEIKPKADQE--SDQLIEDQIERINDQWNTLVGD----LDTRREKLTELAEQWEQ 560
L + + +I P+ + +D E LVG + + E +++ + +
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAE--------LVGKFLGYVSSLVEP-SKVGQFDQV 83
Query: 561 LEKLMSSSERT-LKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVSQI--S 617
L ++ E L+G + +H+LA LL ++ K ++ +
Sbjct: 84 LNLCLTEFENCYLEGND---------IHALAA---------KLLQENDTTLVKTKELIKN 125
Query: 618 TLAA------PIVK-----FLK--KDGLDLQKRITAL------------EL--------- 643
+ A P K + +G ++ A+ EL
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEG---NAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 644 ----LSEELNSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQT--- 696
L + L E + A+ + L ++ + WL++ P +
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGL-NILE---WLENPSNT------PDKDYLL 232
Query: 697 -------LIQFIQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQM 749
LI IQ LA T + E R+ ++ T
Sbjct: 233 SIPISCPLIGVIQ------------LAHYVVTAKLLGFTPG--ELRSYLKGA----TGHS 274
Query: 750 QQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMKW-----VSEKRTFLSEPYDSNNLSD-- 802
Q + + D+W+ F + + V + + + L D
Sbjct: 275 QGLVTAV------AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 803 ----------LRVKLNSYTELTSFV---NKHTRKVKDLS---KNTQEAYVSSQGVVPADL 846
L + + ++ +V N H K + N + V S G P L
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS-G-PPQSL 386
Query: 847 V 847
Sbjct: 387 Y 387
Score = 47.7 bits (113), Expect = 2e-05
Identities = 81/510 (15%), Positives = 144/510 (28%), Gaps = 164/510 (32%)
Query: 5 GQQSQAATQAKQILDQFDT--LLGK-----VKSLLADRE-DQYKDHRV---YKEACDELL 53
+ Q L +F+ L G LL + + K + Y A
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA----- 129
Query: 54 TWLTRARDKIPSMKQKSLSDKLAIENIVAPLESLLNKKA--------QG-------EL-- 96
R K P K+ + S A ++ A QG EL
Sbjct: 130 ----RIMAKRPFDKKSN-S---------ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 97 -------LVEHMQTTGEVVLASTSPDGQTAVKNEMKALNMKMHWIDLLNKLEHEKNRLGA 149
LV + L+ A K + LN+ + W LE+
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI-LEW------LENPS----- 223
Query: 150 AIQAGEAATACISRPSSP-LESAHPPV--PDREIAIRLRLEDQIEQ--VESKLSQLNEAE 204
+ P L S P+ P I + Q+ V +KL E
Sbjct: 224 ------------NTPDKDYLLSI--PISCP----LIGVI---QLAHYVVTAKLLGFTPGE 262
Query: 205 -----AGLEGEEK--LKAEVLAWIDDQKSLITD---------WEKKPCKIKAESAQAEIA 248
G G + + A +A D +S + I +A
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF------IGVRCYEA--Y 314
Query: 249 KMQDLKGVVLQKQTE-------------GLLEDQLAELITLINQ--------AIGKKDS- 286
L +L+ E L ++Q+ + + N I +
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 287 QQKVIESYKADVNELDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAI 346
+ V+ + L+ L ++Q+ S++K+ S + +
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAK-APSGLDQS-RIPFSERKLKFSN---------RFLPV 423
Query: 347 SKKLDSVEHGQGVLCPVKANTLKDI-SNTLE---NSLQTPLEQLQDKAGQ-VKALLSNLD 401
+ S H +L P KD+ N + +Q P+ D G ++ L ++
Sbjct: 424 A----SPFHSH-LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD--GSDLRVLSGSIS 476
Query: 402 AQFVDEQKLLDEINLWKNSQSDEDLAHLAD 431
+ VD + + W+ + H+ D
Sbjct: 477 ERIVD-CIIRLPVK-WETTTQF-KATHILD 503
Score = 35.0 bits (80), Expect = 0.14
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 30/90 (33%)
Query: 64 PSMKQKSLSDKLAIENIVAPLESLLNKKAQGELLVEHMQTTGEVV---LASTSPDGQTAV 120
P S S + A++ +V + K G L+ E+V + Q
Sbjct: 1814 PGRVAASFSQE-ALQYVVERVG-----KRTGWLV--------EIVNYN----VENQQYVA 1855
Query: 121 KNEMKALN--------MKMHWIDLLNKLEH 142
+++AL+ +K+ ID++ +L+
Sbjct: 1856 AGDLRALDTVTNVLNFIKLQKIDII-ELQK 1884
Score = 31.9 bits (72), Expect = 1.2
Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 40/133 (30%)
Query: 750 QQIEMKLNERK-----KEVTGCDDAWKHF-----LSLHAEVMKWVSEKRTF--------- 790
Q+ M ++ K ++V + A HF S+ +++ T
Sbjct: 1627 QEQGMGMDLYKTSKAAQDV--WNRADNHFKDTYGFSI-LDIVINNPVNLTIHFGGEKGKR 1683
Query: 791 LSEPYDS---NNLSDLRVK----LNSYTE-LTSFVNKHTRKVKDLSKNTQEA--YVS--- 837
+ E Y + + D ++K E TS+ + + + ++ TQ A +
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 838 -----SQGVVPAD 845
S+G++PAD
Sbjct: 1744 FEDLKSKGLIPAD 1756
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 64.2 bits (155), Expect = 1e-10
Identities = 55/375 (14%), Positives = 118/375 (31%), Gaps = 32/375 (8%)
Query: 490 QEKIDKYDKENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRRE 549
+ +E N + +++ + IN+ W L E
Sbjct: 297 RLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEE 356
Query: 550 KLTELAEQWEQLEKLMSSSER-------TLKGVETSVEQCDGVVHSLAVLTQNKSELESL 602
L + E+L+ L + G E ++Q D +L+ + + E+
Sbjct: 357 WLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAF 416
Query: 603 LGTVESEKPKVSQISTLAAPIVKFLKKDGLDLQKR-------ITALELLSEELNSKLEEK 655
+ + + +V QI+ +A + + D + R L L+++ LE
Sbjct: 417 ESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERT 476
Query: 656 GKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPP-----QTLIQFIQQLEGELID 710
K ++ + Y W++ A +QD + Q L +Q + L D
Sbjct: 477 EKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPD 536
Query: 711 MKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQ------------MQQIEMKLNE 758
+ + NE+S+ ++ + + T Q + + + L E
Sbjct: 537 ADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALME 596
Query: 759 RKKEVTGCDDAWKHFLSLHAEVMKWVSEKRTFLSEPYDSNNLSDLRVKLNSYTELTSFVN 818
+ K F + + W+ K + L +LN + +
Sbjct: 597 EHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRI-SIEMHGTLEDQLNHLRQYEKSIV 655
Query: 819 KHTRKVKDLSKNTQE 833
+ K+ L + Q+
Sbjct: 656 NYKPKIDQLEGDHQQ 670
Score = 47.6 bits (112), Expect = 2e-05
Identities = 48/483 (9%), Positives = 138/483 (28%), Gaps = 38/483 (7%)
Query: 130 KMHWIDLLNKLEHEKNRLGAAIQAGEAATACISRPSSPLESAHPPVPDREIAIRLRLEDQ 189
K + +LE N L ++ P E + + E
Sbjct: 300 KPPKVQEKCQLEINFNTLQTKLRLSN------RPAFMPSEGKMVSDINNAWGGLEQAEKG 353
Query: 190 IEQ-VESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCKIKAESAQAEIA 248
E+ + +++ +L + E + + +W D +++++ + + + +A +
Sbjct: 354 YEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYETATL--SEIKALLK 411
Query: 249 KMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKADVNELDKQLDA- 307
K + + + +D++ ++ + + + + + + L A
Sbjct: 412 KHEAFESDLAA------HQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGAL 465
Query: 308 ISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVEHGQGVLCPVKANT 367
+ + ++ ++ Y + ++ + L T
Sbjct: 466 TQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVH---------T 516
Query: 368 LKDISNTLE--NSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLDEINLWKNSQSDED 425
+++I + L + + + + + + N + E
Sbjct: 517 IEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEI 576
Query: 426 LAHLADSIKPLDEVVERIENNAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGN 485
+ + + + + + LR+QF I +I +G +
Sbjct: 577 NGKWEHVRQLVPRRDQALME-EHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIE 635
Query: 486 SATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQESDQLIED------QIERINDQWNT 539
E + ++ + I +++ Q + LI D +E I W
Sbjct: 636 MHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQ 695
Query: 540 LVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSEL 599
L+ + ++ E S+ + S D + ++ L
Sbjct: 696 LLTTIARTINEV----ENQILTRDAKGISQEQMNEFRASFNHFDRKKTGMMDCEDFRACL 751
Query: 600 ESL 602
S+
Sbjct: 752 ISM 754
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 61.8 bits (150), Expect = 2e-10
Identities = 45/300 (15%), Positives = 115/300 (38%), Gaps = 17/300 (5%)
Query: 473 TETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQ------ESDQLI 526
E + + A+V + K+ + +++I D K++ +AD +
Sbjct: 22 VEALLASEDYGKDLASVNNLLKKH-QLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQV 80
Query: 527 EDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVV 586
+D+ E IN ++ + RR KL + + Q + M E +K + V D
Sbjct: 81 KDKRETINGRFQRIKSMAAARRAKL-NESHRLHQFFRDMDDEESWIKEKKLLVSSED-YG 138
Query: 587 HSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSE 646
L + + + + L + + +P + + + ++Q+R+ +
Sbjct: 139 RDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWK 198
Query: 647 ELNSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLP-----PQTLIQFI 701
EL +G+ ++++ + ++ +VE+ W+ + + Q L++
Sbjct: 199 ELKQLAAARGQRLEESLEYQ-QFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKH 257
Query: 702 QQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKK 761
+ E + KD++ + G ++ + ++N I + + ++ +E +RK
Sbjct: 258 EAFETDFTVHKDRVNDVCANGEDLIK--KNNHHVENITAKMKGLKGKVSDLEKAAAQRKA 315
Score = 30.6 bits (69), Expect = 2.3
Identities = 20/141 (14%), Positives = 57/141 (40%), Gaps = 6/141 (4%)
Query: 13 QAKQILDQFDTLLGKVKSLLADREDQYKDHRVYKEACDELLTWLTRARDKIPSMKQKSLS 72
+ + I +F + + A + ++ H+ +++ D+ +W+ + + S +
Sbjct: 83 KRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDM-DDEESWIKEKKLLVSS--EDYGR 139
Query: 73 DKLAIENIVAPLESLLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAVKNEMKALNMKMH 132
D ++N+ + L + A E ++ + TG+ L+ + G+ ++ +
Sbjct: 140 DLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKK-LSDDNTIGKEEIQQRLAQFVDH-- 196
Query: 133 WIDLLNKLEHEKNRLGAAIQA 153
W +L RL +++
Sbjct: 197 WKELKQLAAARGQRLEESLEY 217
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 59.9 bits (144), Expect = 2e-09
Identities = 63/471 (13%), Positives = 162/471 (34%), Gaps = 45/471 (9%)
Query: 326 QKVIESYKADVNDLDKQLDAISKKLDSVEHGQGVLCPVKANTLKDISNTLENSLQTPLEQ 385
++++E Y+ ++L + + L++ T++ + LE+ +
Sbjct: 10 ERLMEEYERLASELLEWIRRTIPWLENRTPE---------KTMQAMQKKLEDFRDYRRKH 60
Query: 386 LQDKAGQVKALLSNLDAQFVDEQKLLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIEN 445
K + L N + + + + D+A ++ ++ E
Sbjct: 61 KPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLL 120
Query: 446 NAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATV---------QEKIDKY 496
N + +L+ L L E+F + + + D SA++ E +
Sbjct: 121 NEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESD 180
Query: 497 DKENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAE 556
+Q ++ + + +E+ ++ + D+ ++I DQW+ L RRE L + +
Sbjct: 181 LAAHQDRVEQIAAIAQELNELDYHDAVN-VNDRCQKICDQWDRLGTLTQKRREALERMEK 239
Query: 557 QWEQLEKLMSSSERTLKGVETSVEQCDG------VVHSLAVLTQNKSELESLLGTVESEK 610
E +++L + +E +VHS+ + + E T+
Sbjct: 240 LLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEAD 299
Query: 611 PKVSQISTLAAPIVKFLKKDGL--------------DLQKRITALELLSEELNSKLEEKG 656
+ I + + K ++ + +L+ + ++ L + L+E+
Sbjct: 300 GERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEEL 359
Query: 657 KEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQT----LIQFIQQLEGELIDMK 712
+ +R + IG W+Q+ +I ++ + ++Q E +I+ K
Sbjct: 360 ARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYK 419
Query: 713 DKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEV 763
+ + ++ I + + T+ + + + EV
Sbjct: 420 NNIDKLEGDHQLIQEA--LVFDNKHTNYTMEHIRVGWELLLTTIARTINEV 468
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 56.9 bits (137), Expect = 1e-08
Identities = 31/286 (10%), Positives = 98/286 (34%), Gaps = 9/286 (3%)
Query: 553 ELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEK-P 611
+ + QL + + E+ + E + + +T + +
Sbjct: 3 HMRHRLFQLNREVDDLEQWIAEREVVAGSHE-LGQDYEHVTMLQERFREFARDTGNIGQE 61
Query: 612 KVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQKAKAMRAAYLT 671
+V ++ LA ++ D + + L +L ++ + + + + + +
Sbjct: 62 RVDTVNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHK-FYH 120
Query: 672 DVEKIGTWLQDAEAKIQDRTLP----PQTLIQFIQQLEGELIDMKDKLAQMTRTGNEISQ 727
D ++I +QD K+ + +TL + E ++ + ++ Q+ +
Sbjct: 121 DAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQA 180
Query: 728 HTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMKWVSEK 787
++ IQ E + + R+ + D + F S+ ++M W+ +
Sbjct: 181 AYA-GDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKF-RFFSMVRDLMLWMEDV 238
Query: 788 RTFLSEPYDSNNLSDLRVKLNSYTELTSFVNKHTRKVKDLSKNTQE 833
+ ++S + + +N++ + + ++ + +
Sbjct: 239 IRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKS 284
Score = 38.0 bits (88), Expect = 0.009
Identities = 29/287 (10%), Positives = 101/287 (35%), Gaps = 11/287 (3%)
Query: 383 LEQLQDKAGQVKALLSNLDAQFVDEQKLLDEINLWKNSQSDEDLAHLADSIKPLDEVVER 442
E + + + + + ++ + + D A +A+ L+E
Sbjct: 38 YEHVTMLQERFREFARDTGNIGQERVDTVNHLADELINSGHSDAATIAEWKDGLNEAWAD 97
Query: 443 IENNAVPKLKSL--LLLREQFTTLIMQIVGFITETTARVGEVDGNS-ATVQEKIDKYD-- 497
+ + + L +F +I G I + ++ E G TV+ +
Sbjct: 98 LLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTF 157
Query: 498 ----KENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTE 553
+ +++ L + ++ + I+ + + + W +L+ ++RR +L +
Sbjct: 158 EHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVD 217
Query: 554 LAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKV 613
+ ++ ++ V +E + ++ + + + + +++
Sbjct: 218 -TGDKFRFFSMVRDLMLWMEDVIRQIEAQE-KPRDVSSVELLMNNHQGIKAEIDARNDSF 275
Query: 614 SQISTLAAPIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQ 660
+ L ++ ++++++ L +E+ K E++ + ++
Sbjct: 276 TTCIELGKSLLARKHYASEEIKEKLLQLTEKRKEMIDKWEDRWEWLR 322
Score = 31.5 bits (71), Expect = 1.1
Identities = 18/150 (12%), Positives = 41/150 (27%), Gaps = 8/150 (5%)
Query: 6 QQSQAATQAKQILDQFDTLLGKVKSLLADREDQYKD---HRVYKEACDELLTWLTRARDK 62
A + D + + L+ R + E+ + K
Sbjct: 76 SGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKHKK 135
Query: 63 IPSMKQKSLSDKLAIENIVAPLESLLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAVKN 122
+P + + +E + + + V +Q + A+ + D ++
Sbjct: 136 LPEELGRDQN---TVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQK 192
Query: 123 EMKALNMKMHWIDLLNKLEHEKNRLGAAIQ 152
+ W LL+ E + RL
Sbjct: 193 RENEVLEA--WKSLLDACESRRVRLVDTGD 220
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 53.7 bits (129), Expect = 3e-07
Identities = 33/315 (10%), Positives = 112/315 (35%), Gaps = 13/315 (4%)
Query: 458 REQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIKPK 517
+ + + + A + E++ + E+ + ++ Q+E ++ + +
Sbjct: 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRL 918
Query: 518 ADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVET 577
A ++ Q +E+ + + + + + ++ +Q LE+ + E + ++
Sbjct: 919 AAKK--QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ- 975
Query: 578 SVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKKDGLDLQKR 637
+ + + + +E + E+ + + + + ++ +L K
Sbjct: 976 --LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL 1033
Query: 638 ITALELLSEELNSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTL 697
E + EL +L+++ K Q+ + ++ + + + + +A+I +
Sbjct: 1034 KNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093
Query: 698 IQFIQQLEGELIDMKDKLAQMTRTGNEISQHTESNEE--------RALIQSTILSFTEQM 749
+ +Q L D + + E+ H +E R + +E++
Sbjct: 1094 EEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEEL 1153
Query: 750 QQIEMKLNERKKEVT 764
+ ++ +L +
Sbjct: 1154 EALKTELEDTLDTTA 1168
Score = 52.1 bits (125), Expect = 7e-07
Identities = 45/309 (14%), Positives = 125/309 (40%), Gaps = 32/309 (10%)
Query: 377 NSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLDEINLWKNSQSDEDLAHLADSIKPL 436
N LQ L+ + + + + L A+ + +++L E+ + + +E L K +
Sbjct: 895 NLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEM-EARIEEEEERSQQLQAEKKKM 953
Query: 437 DEVVERIENNAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKY 496
+ + +E + + L+ + T ++ +++ + ++++ +K
Sbjct: 954 QQQMLDLEEQLEEEEAARQKLQLEKVTAD-----------GKIKKMEDDILIMEDQNNKL 1002
Query: 497 DKENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAE 556
KE +L + ++ +E ++ + ++ ++ +++ +L+ +L + +
Sbjct: 1003 TKER----KLLEERVSDLTTNLAEEEEKA--KNLTKLKNKHESMISELE---VRLKKEEK 1053
Query: 557 QWEQLEKLMSSSERTLKGVETSVEQCDGVVHSL-AVLTQNKSELESLLGTVESEKPKVS- 614
++LEK+ E + + + + L A L + + EL++ L +E E + +
Sbjct: 1054 SRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNN 1113
Query: 615 ---QISTLAAPI------VKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQKAKAM 665
+I L + I ++ K +K+ L E L ++LE+ + +
Sbjct: 1114 ALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQEL 1173
Query: 666 RAAYLTDVE 674
R + D +
Sbjct: 1174 RGSDYKDDD 1182
Score = 50.2 bits (120), Expect = 3e-06
Identities = 48/315 (15%), Positives = 120/315 (38%), Gaps = 30/315 (9%)
Query: 530 IERINDQWNTLVGDLDTR------REKLTELAEQWEQLEKLMSSSERTLKGVETS----V 579
+ + W L + E++ E+ ++ ++ +E LK +E
Sbjct: 832 MNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLC 891
Query: 580 EQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKKDGLDLQKRIT 639
E+ + + L T+ +E E + + ++K ++ +I ++ ++ LQ
Sbjct: 892 EEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKK 951
Query: 640 ALELLSEELNSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTLIQ 699
++ +L +LEE+ QK + + ++K+ + E + T + L +
Sbjct: 952 KMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEE 1011
Query: 700 FIQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNER 759
+ L L + ++K +T+ N+ E R ++ ++ +L +
Sbjct: 1012 RVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRL----------KKEEKSRQELEKI 1061
Query: 760 KKEVTG-CDDAWKHFLSLHAEVMKWVSEKRTFLSEPYDSNNLSDLRVKLNSYTELTSFVN 818
K+++ G D + L A++ + ++ E L +L + TS N
Sbjct: 1062 KRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE------LQAALARLE---DETSQKN 1112
Query: 819 KHTRKVKDLSKNTQE 833
+K+++L + +
Sbjct: 1113 NALKKIRELESHISD 1127
Score = 41.4 bits (97), Expect = 0.001
Identities = 36/224 (16%), Positives = 82/224 (36%), Gaps = 20/224 (8%)
Query: 117 QTAVKNEMKALNMKM-HWIDLLNKLEHEKNRLGAAIQAGEAATACISRPSSPLESAHPPV 175
+ ++K + + D NKL E+ L + A + L
Sbjct: 978 KVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLK--- 1034
Query: 176 PDREIAIRLRLEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKP 235
++ ++ LE ++++ E +L + + LEGE E I + ++ I + + +
Sbjct: 1035 -NKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ---IAELQAQIAELKAQL 1090
Query: 236 CKIKAESAQAEIAKMQDLKGVVLQKQTE-GLLEDQLAELITLINQAIGKKDSQQKVIESY 294
K + E A A+++D + LE +++L + ++ +K
Sbjct: 1091 AKKEEELQAAL-ARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDL 1149
Query: 295 KADVNELDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVND 338
++ L +L+ + +QQ++ S D +D
Sbjct: 1150 SEELEALKTELED----------TLDTTATQQELRGSDYKDDDD 1183
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 52.3 bits (125), Expect = 3e-07
Identities = 28/301 (9%), Positives = 95/301 (31%), Gaps = 16/301 (5%)
Query: 473 TETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQ------ESDQLI 526
E E+ + + ++ Q ++ K++ +A + I
Sbjct: 23 QELYVISDEIPKDEEGAIVMLKRH-LRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQI 81
Query: 527 EDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVV 586
+++ + L + R+ KL E QL++ E+ + E + +
Sbjct: 82 IRLQGQVDKHYAGLKDVAEERKRKL-ENMYHLFQLKRETDDLEQWISEKELVASSPE-MG 139
Query: 587 HSLAVLTQNKSELESLLGTVES-EKPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLS 645
+T + + + + +V ++ ++ + + + L +
Sbjct: 140 QDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMW 199
Query: 646 EELNSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPP----QTLIQFI 701
+L ++ + + + + + Y +I + + ++ + ++ +
Sbjct: 200 ADLLELIDTRMQLLAASYDLH-RYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVH 258
Query: 702 QQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKK 761
E ++ + ++ Q + + E+ IQ+ + Q + R+
Sbjct: 259 TAFERDVHLLGVQVQQFQDVATRLQT-AYAGEKAEAIQNKEQEVSAAWQALLDACAGRRT 317
Query: 762 E 762
+
Sbjct: 318 Q 318
Score = 49.2 bits (117), Expect = 3e-06
Identities = 33/285 (11%), Positives = 86/285 (30%), Gaps = 12/285 (4%)
Query: 555 AEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVS 614
A + +Q +E + E V + + VE +
Sbjct: 3 ANEAQQYYLDADEAEAWIGEQELYVISDE-IPKDEEGAIVMLKRHLRQQRAVEDYGRNIK 61
Query: 615 QISTLAAPIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQKAKAMRAAYLTDVE 674
Q+++ A ++ +G + + ++ L EE+ ++++ + + +
Sbjct: 62 QLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQ-LKRETD 120
Query: 675 KIGTWLQDAEAKIQDRTLPP-----QTLIQFIQQLEGELIDM-KDKLAQMTRTGNEISQH 728
+ W+ + E + L + E + ++++ + +
Sbjct: 121 DLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLID- 179
Query: 729 TESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMKWVSEKR 788
+ E A I E + ++ R + + D + + AE++ + EK
Sbjct: 180 -AGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHR-YFYTGAEILGLIDEKH 237
Query: 789 TFLSEPYDSNNLSDLRVKLNSYTELTSFVNKHTRKVKDLSKNTQE 833
L E + S +T V+ +V+
Sbjct: 238 RELPEDV-GLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATR 281
Score = 29.9 bits (67), Expect = 3.6
Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 7/109 (6%)
Query: 456 LLREQFTTLIMQIVGFITETTARVGEVDGNSA-TVQEKIDKYD------KENQSEIDMLN 508
++ +I+G I E + E G A T + + ++
Sbjct: 217 YDLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQ 276
Query: 509 DVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQ 557
DV ++ E + I+++ + ++ W L+ RR +L + A++
Sbjct: 277 DVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADK 325
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil,
contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1
a.7.1.1
Length = 250
Score = 46.6 bits (110), Expect = 1e-05
Identities = 35/233 (15%), Positives = 87/233 (37%), Gaps = 20/233 (8%)
Query: 547 RREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTV 606
R E+L LAE++ Q E G E + Q D SL + + E+ +
Sbjct: 8 RLERLEHLAEKFRQKASTH---ETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDL 64
Query: 607 ESEKPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQKAKA-- 664
+ + +V QI+ +A + + D +++ R + + L + +++ + +++ +
Sbjct: 65 AAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLL 124
Query: 665 -----MRAAYLTDVEKIGTWLQDAEAKIQDRTLPP-----QTLIQFIQQLEGELIDMKDK 714
+ + W++ A +QD + Q+LI +Q + L + +
Sbjct: 125 ETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGE 184
Query: 715 LAQMTRTGNEISQ-----HTESNEERALIQSTILSFTEQMQQIEMKLNERKKE 762
+ NE+ + + + T+ + +++ + R +
Sbjct: 185 RQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQS 237
Score = 38.9 bits (90), Expect = 0.004
Identities = 37/242 (15%), Positives = 88/242 (36%), Gaps = 23/242 (9%)
Query: 450 KLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNS---ATVQEKIDKYD------KEN 500
+L+ L L E+F + + + D S V+ + K++ +
Sbjct: 8 RLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAH 67
Query: 501 QSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQ 560
Q ++ + + +E+ + D + D+ ++I DQW+ L RRE L + + E
Sbjct: 68 QDRVEQIAAIAQELN-ELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLET 126
Query: 561 LEKLMSSSERTLKGVETSVE------QCDGVVHSLAVLTQNKSELESLLGTVESEKPKVS 614
+++L + +E Q +VHS+ + + E T+ +
Sbjct: 127 IDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQ 186
Query: 615 QISTLAAPIVKFLKKDGLD-------LQKRITALELLSEELNSKLEEKGKEVQKAKAMRA 667
I + + K ++ + + L +++ + + + +Q+ A +
Sbjct: 187 SIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQH 246
Query: 668 AY 669
A
Sbjct: 247 AN 248
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of
spectrin, alpha helical linker region, 3- helix
coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP:
a.7.1.1 a.7.1.1
Length = 214
Score = 45.6 bits (108), Expect = 2e-05
Identities = 22/171 (12%), Positives = 61/171 (35%), Gaps = 7/171 (4%)
Query: 668 AYLTDVEKIGTWLQDAEAKIQDRTLPP-----QTLIQFIQQLEGELIDMKDKLAQMTRTG 722
A+L D++ WL + + +P + L+Q ++ E+ +D ++ +G
Sbjct: 4 AFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESG 63
Query: 723 NEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMK 782
++ Q +++ E L+ + + R + C ++ F +
Sbjct: 64 EKVIQG-QTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLG-FQEFQKDAKQAEA 121
Query: 783 WVSEKRTFLSEPYDSNNLSDLRVKLNSYTELTSFVNKHTRKVKDLSKNTQE 833
+S + L+ ++L + + + + + KV + +
Sbjct: 122 ILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNK 172
Score = 45.3 bits (107), Expect = 2e-05
Identities = 25/196 (12%), Positives = 72/196 (36%), Gaps = 8/196 (4%)
Query: 473 TETTARVGEVDGNSATVQEKIDKYD------KENQSEIDMLNDVWKEIKPKADQESDQLI 526
T+ ++ + ++ + ++ +Q + + +++ L+
Sbjct: 19 TQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLL 78
Query: 527 EDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVV 586
++E ++ W+ L ++R L +++ +K +E L E ++ +
Sbjct: 79 GQRLEGLDTGWDALGRMWESRSHTL-AQCLGFQEFQKDAKQAEAILSNQEYTLAHLE-PP 136
Query: 587 HSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSE 646
SL + E LG++E+ + KV +V +++++ +E
Sbjct: 137 DSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHR 196
Query: 647 ELNSKLEEKGKEVQKA 662
+ N K +E ++
Sbjct: 197 KNNEKAQEASVLLRDN 212
Score = 29.9 bits (67), Expect = 3.0
Identities = 13/109 (11%), Positives = 38/109 (34%), Gaps = 4/109 (3%)
Query: 45 YKEACDELLTWLTRARDKIPSMKQKSLSDKLAIENIVAPLESLLNKKAQGELLVEHMQTT 104
+ + D+ WL+ + + S + E ++ + ++ + + ++ +
Sbjct: 5 FLQDLDDFQAWLSITQKAVAS--EDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 105 GEVVLASTSPDGQTAVKNEMKALNMKMHWIDLLNKLEHEKNRLGAAIQA 153
GE V+ + + ++ L+ W L E + L +
Sbjct: 63 GEKVIQGQTDPEYLLLGQRLEGLDTG--WDALGRMWESRSHTLAQCLGF 109
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 46.3 bits (110), Expect = 5e-05
Identities = 28/180 (15%), Positives = 71/180 (39%), Gaps = 8/180 (4%)
Query: 487 ATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDT 546
A V + + E+ L + ++ + + L E++I ++ + + + +
Sbjct: 889 AIVYLQCCYRRMMAKRELKKLKIEARSVE-RYKKLHIGL-ENKIMQLQRKIDEQNKEYKS 946
Query: 547 RREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTV 606
EK+ L + + + S L+ E E+ + + L + E+ L +
Sbjct: 947 LLEKMNNLEITYSTETEKLRSDVERLRMSE---EEAKNATNRVLSLQE---EIAKLRKEL 1000
Query: 607 ESEKPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQKAKAMR 666
+ + I A ++ +L+++ T L+ EELN ++ ++ KE+ + +
Sbjct: 1001 HQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKK 1060
Score = 39.3 bits (92), Expect = 0.006
Identities = 26/237 (10%), Positives = 92/237 (38%), Gaps = 23/237 (9%)
Query: 178 REIAIRLRLEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCK 237
IA++ L + + + ++ ++ + + + K+++ C
Sbjct: 841 ATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQ----CC 896
Query: 238 IKAESAQAEIAKMQDL-KGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKA 296
+ A+ E+ K++ + V K+ LE+++ +L I++ + S + + + +
Sbjct: 897 YRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEI 956
Query: 297 DVNELDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVNDLDKQLDAISKKLDSVEHG 356
+ ++L + + + + + + S + ++ L K+L + +
Sbjct: 957 TYSTETEKLRS---DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT---- 1009
Query: 357 QGVLCPVKANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLDE 413
+++ ++ ++ + + +L+++ +K L+ + D+ K + E
Sbjct: 1010 -----------IEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITE 1055
Score = 38.6 bits (90), Expect = 0.010
Identities = 22/146 (15%), Positives = 62/146 (42%), Gaps = 2/146 (1%)
Query: 619 LAAPIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQKAKAMRAAYLTDVEKIGT 678
+ A V+ KK + L+ +I L+ +E N + + +++ + + +
Sbjct: 911 IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970
Query: 679 WLQDAEAKIQDRTLPPQTLIQFIQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALI 738
L+ +E + ++ T +L + I +L EL + + + ++ TE +
Sbjct: 971 RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE--L 1028
Query: 739 QSTILSFTEQMQQIEMKLNERKKEVT 764
+ + +++ +++++ KE+T
Sbjct: 1029 KEQNTLLKTEKEELNRRIHDQAKEIT 1054
Score = 36.6 bits (85), Expect = 0.043
Identities = 24/188 (12%), Positives = 67/188 (35%), Gaps = 23/188 (12%)
Query: 364 KANTLKDISNTLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLDEINLWKNSQSD 423
K + LEN + ++ ++ + K+LL + L +
Sbjct: 915 SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKM-------NNLEITYSTETE---- 963
Query: 424 EDLAHLADSIKPLDEVVERIENNAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVD 483
++ E + E A +L L+E+ L + + +T ++
Sbjct: 964 --------KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE----LHQTQTEKKTIE 1011
Query: 484 GNSATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGD 543
+ + + ++ E + + +L +E+ + ++ ++ E +++ ++ L D
Sbjct: 1012 EWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELD 1071
Query: 544 LDTRREKL 551
L+ R +
Sbjct: 1072 LNDERLRY 1079
Score = 34.7 bits (80), Expect = 0.14
Identities = 36/246 (14%), Positives = 80/246 (32%), Gaps = 31/246 (12%)
Query: 523 DQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQC 582
L E + I + + R + Q + + LK SVE+
Sbjct: 860 MMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERY 919
Query: 583 DGVVHSL----AVLTQNKSELESLLGTVESEKPKV-SQISTLAAPIVKFLKKDGLDLQKR 637
+ L L + E ++ + + ST + L+ D L+
Sbjct: 920 KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTE----TEKLRSDVERLRM- 974
Query: 638 ITALELLSEELNSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTL 697
SEE + +Q+ A L + +++ K +
Sbjct: 975 -------SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK------HET 1021
Query: 698 IQFIQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLN 757
Q + +L+ + +K + ++ R ++ ++ E+ L+ E+ +Q+E+ LN
Sbjct: 1022 EQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV--------EETKQLELDLN 1073
Query: 758 ERKKEV 763
+ +
Sbjct: 1074 DERLRY 1079
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of
spectrin, alpha-helical linker region, 3-helix coiled
coil, structural protein; 2.00A {Gallus gallus} SCOP:
a.7.1.1 a.7.1.1
Length = 216
Score = 43.8 bits (103), Expect = 8e-05
Identities = 23/170 (13%), Positives = 66/170 (38%), Gaps = 8/170 (4%)
Query: 669 YLTDVEKIGTWLQDAEAKIQDRTLPP-----QTLIQFIQQLEGELIDMKDKLAQMTRTGN 723
+ T ++ WL + EA + L++ Q LE ++ +D+L + +
Sbjct: 8 FNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQAD 67
Query: 724 EISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMKW 783
+ S + + ++ + + Q+I+ R+ ++ + F + + W
Sbjct: 68 SLMT--SSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMD-DEESW 124
Query: 784 VSEKRTFLSEPYDSNNLSDLRVKLNSYTELTSFVNKHTRKVKDLSKNTQE 833
+ EK+ +S +L+ ++ + L + + H ++ + ++
Sbjct: 125 IKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKK 174
Score = 41.8 bits (98), Expect = 4e-04
Identities = 31/196 (15%), Positives = 75/196 (38%), Gaps = 9/196 (4%)
Query: 473 TETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQ------ESDQLI 526
E + + A+V + K+ + +++I D K++ +AD +
Sbjct: 22 VEALLASEDYGKDLASVNNLLKKH-QLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQV 80
Query: 527 EDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVV 586
+D+ E IN ++ + RR KL + + Q + M E +K + V D
Sbjct: 81 KDKRETINGRFQRIKSMAAARRAKL-NESHRLHQFFRDMDDEESWIKEKKLLVSSED-YG 138
Query: 587 HSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSE 646
L + + + + L + + +P + + + ++Q+R+ +
Sbjct: 139 RDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWK 198
Query: 647 ELNSKLEEKGKEVQKA 662
EL +G+ ++++
Sbjct: 199 ELKQLAAARGQRLEES 214
Score = 29.1 bits (65), Expect = 4.4
Identities = 20/140 (14%), Positives = 57/140 (40%), Gaps = 6/140 (4%)
Query: 13 QAKQILDQFDTLLGKVKSLLADREDQYKDHRVYKEACDELLTWLTRARDKIPSMKQKSLS 72
+ + I +F + + A + ++ H+ +++ D+ +W+ + + S +
Sbjct: 83 KRETINGRFQRIKSMAAARRAKLNESHRLHQFFRD-MDDEESWIKEKKLLVSS--EDYGR 139
Query: 73 DKLAIENIVAPLESLLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAVKNEMKALNMKMH 132
D ++N+ + L + A E ++ + TG+ L+ + G+ ++ +
Sbjct: 140 DLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKK-LSDDNTIGKEEIQQRLAQFVDH-- 196
Query: 133 WIDLLNKLEHEKNRLGAAIQ 152
W +L RL +++
Sbjct: 197 WKELKQLAAARGQRLEESLE 216
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical
linker region, 2 tandem 3-helix coiled- coils,
structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1
a.7.1.1 PDB: 1aj3_A
Length = 213
Score = 42.6 bits (100), Expect = 2e-04
Identities = 27/170 (15%), Positives = 71/170 (41%), Gaps = 8/170 (4%)
Query: 669 YLTDVEKIGTWLQDAEAKIQDRTLPP-----QTLIQFIQQLEGELIDMKDKLAQMTRTGN 723
+ D++ +W+++ + + Q L + ++LE EL + + + TG
Sbjct: 5 FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGK 64
Query: 724 EISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMKW 783
++S +E IQ + F + ++++ R + + + + ++ E W
Sbjct: 65 KLSDDNTIGKEE--IQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANV-EEEEAW 121
Query: 784 VSEKRTFLSEPYDSNNLSDLRVKLNSYTELTSFVNKHTRKVKDLSKNTQE 833
++EK T ++ + L+ ++ L + + H +V D+ N ++
Sbjct: 122 INEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGED 171
Score = 41.4 bits (97), Expect = 4e-04
Identities = 31/216 (14%), Positives = 76/216 (35%), Gaps = 11/216 (5%)
Query: 457 LREQFTTLIMQIVGFITETTARV--GEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEI 514
+ QF + +I E V + + VQ K+ K ++E+ + +
Sbjct: 1 MVHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKH-KRLEAELAAHEPAIQSV 59
Query: 515 KPKADQ------ESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSS 568
+ + I+ ++ + D W L R ++L E + +++Q +
Sbjct: 60 LDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL-EESLEYQQFVANVEEE 118
Query: 569 ERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLK 628
E + T V D +LA + + E+ K +V+ + ++K
Sbjct: 119 EAWINEKMTLVASED-YGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNN 177
Query: 629 KDGLDLQKRITALELLSEELNSKLEEKGKEVQKAKA 664
++ ++ L+ +L ++ ++ + A
Sbjct: 178 HHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENSA 213
Score = 30.3 bits (68), Expect = 2.2
Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 10/146 (6%)
Query: 6 QQSQAATQAKQILDQFDTLLGKVKSLLADRE---DQYKDHRVYKEACDELLTWLTRARDK 62
+ + +Q L QF ++K L A R ++ +++ + +E W+ +K
Sbjct: 69 DNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWI---NEK 125
Query: 63 IPSMKQKSLSDKLA-IENIVAPLESLLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAVK 121
+ + + D LA I+ ++ E+ + V + GE ++ + + +
Sbjct: 126 MTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVE-NIT 184
Query: 122 NEMKALNMKMHWIDLLNKLEHEKNRL 147
+MK L K DL K +L
Sbjct: 185 AKMKGLKGK--VSDLEKAAAQRKAKL 208
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 40.7 bits (95), Expect = 9e-04
Identities = 27/205 (13%), Positives = 77/205 (37%), Gaps = 11/205 (5%)
Query: 459 EQFTTLIMQIVGFITETTARV--GEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIKP 516
++F + ++ +I V E+ + + ++++ +E+++EID ++ +
Sbjct: 16 QRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERH-QEHRTEIDARAGTFQAFEQ 74
Query: 517 KADQ------ESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSER 570
Q + I+ +++ ++ + L RR L + + + + +E
Sbjct: 75 FGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMML-DQCLELQLFHRDCEQAEN 133
Query: 571 TLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKKD 630
+ E + D SL + + E + ++ K++ + A ++
Sbjct: 134 WMAAREAFLNTED-KGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYA 192
Query: 631 GLDLQKRITALELLSEELNSKLEEK 655
D+ R + L +++ EK
Sbjct: 193 KGDISSRRNEVLDRWRRLKAQMIEK 217
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome;
2.95A {Homo sapiens}
Length = 450
Score = 39.3 bits (91), Expect = 0.005
Identities = 33/270 (12%), Positives = 98/270 (36%), Gaps = 18/270 (6%)
Query: 501 QSEIDMLNDVWKEIKPKADQ----ESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAE 556
+ I+ + I Q ++D + I ++ +++ L+ R + L +L
Sbjct: 38 EQHINSHRGIHNSIGDYRWQLDKIKADLREKSAIYQLEEEYENLLKASFERMDHLRQLQN 97
Query: 557 QWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVSQI 616
+ + + + E D + Q + + +E ++ +++++
Sbjct: 98 IIQATSREIMW----INDCEEEELLYD-WSDKNTNIAQKQEAFSIRMSQLEVKEKELNKL 152
Query: 617 STLAAPIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQKAKAMRAAYLTDVEKI 676
+ +V ++ + L+ + + +++ A + + +
Sbjct: 153 KQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYF-QFFEEAQST 211
Query: 677 GTWLQDAEAKIQ-----DRTLPPQTLIQFIQQLEGELIDM---KDKLAQMTRTGNEISQH 728
+L+ + I+ D+ +P Q L++ I++LE E + K ++ + +I Q
Sbjct: 212 EAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQL 271
Query: 729 TESNEERALIQSTILSFTEQMQQIEMKLNE 758
N + + IL +Q + +++
Sbjct: 272 KPRNPDYRSNKPIILRALCDYKQDQKIVHK 301
Score = 30.4 bits (68), Expect = 2.9
Identities = 22/210 (10%), Positives = 68/210 (32%), Gaps = 14/210 (6%)
Query: 6 QQSQAATQAKQILDQFDTLLGKVKSLLADREDQYKDHRVYKEACDELLTWLTRARDKIPS 65
+ +A + K + Q + + +R D + + +A + W+ ++
Sbjct: 59 DKIKADLREKSAIYQLEEEYENLLKASFERMDHLRQLQNIIQATSREIMWINDCEEEELL 118
Query: 66 MKQKSLSDKLAIENIVAPLESLLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAVKNEMK 125
I +++ E + ++ + ++ + P + K E
Sbjct: 119 YDWS--DKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPA---SDKIEAY 173
Query: 126 ALNMKMHWIDLLNKLEHEKNRLGAAIQA------GEAATACISRPSSPLESAHPPVPDRE 179
++ W +L + L ++ A + + +P +
Sbjct: 174 MDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKKYPCDKNMP 233
Query: 180 IAIRLRLEDQIEQVESKLSQLNEAEAGLEG 209
+ L +QI+++E + ++ E + ++
Sbjct: 234 LQ---HLLEQIKELEKEREKILEYKRQVQN 260
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 38.5 bits (89), Expect = 0.007
Identities = 25/179 (13%), Positives = 59/179 (32%), Gaps = 11/179 (6%)
Query: 669 YLTDVEKIGTWLQDAEAKIQ-----DRTLPPQTLIQFIQQLEGELIDMKDKLAQMTRTGN 723
++ K WL + E + DR + L EL + K+ ++ G+
Sbjct: 13 FVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGD 72
Query: 724 EISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMKW 783
+ + E + R ++S + Q + + + ++ F + E
Sbjct: 73 RLLR--EDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFSDV-REAEGQ 129
Query: 784 VSEKRTFLSEPY---DSNNLSDLRVKLNSYTELTSFVNKHTRKVKDLSKNTQEAYVSSQ 839
+ + + L Y S ++ L L + +N++ + L+K +
Sbjct: 130 LQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAVVQLKP 188
Score = 32.3 bits (73), Expect = 0.59
Identities = 16/134 (11%), Positives = 48/134 (35%), Gaps = 9/134 (6%)
Query: 501 QSEIDMLNDVWKEIKPKADQ------ESDQLIEDQIERINDQWNTLVGDLDTRREKLTEL 554
E+++ KE++ D+ + +E + QW+ ++ L +
Sbjct: 54 MRELELKEKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHL-KE 112
Query: 555 AEQWEQLEKLMSSSERTLKGVETSVEQC--DGVVHSLAVLTQNKSELESLLGTVESEKPK 612
+ Q + +E L+ ++ ++ + ++ L + + + K
Sbjct: 113 NAAYFQFFSDVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGH 172
Query: 613 VSQISTLAAPIVKF 626
+S ++ A +V+
Sbjct: 173 LSGLAKRAKAVVQL 186
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin,
ankyrin-binding domain, actin capping, AC binding,
cytoskeleton, disease mutation; 2.10A {Homo sapiens}
PDB: 3f57_A
Length = 218
Score = 36.1 bits (83), Expect = 0.026
Identities = 20/197 (10%), Positives = 57/197 (28%), Gaps = 10/197 (5%)
Query: 473 TETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQ------ESDQLI 526
E A E+ + V DK+ + + + + ++ I
Sbjct: 20 KELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATI 79
Query: 527 EDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVV 586
+ + +N+ W L+ +DTR + L + + + + + + V
Sbjct: 80 AEWKDGLNEMWADLLELIDTRMQLL-AASYDLHRYFYTGAEILGLIDEKHREL--PEDVG 136
Query: 587 HSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKKDGLD-LQKRITALELLS 645
+ + + +V Q +A + + + +Q + +
Sbjct: 137 LDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAW 196
Query: 646 EELNSKLEEKGKEVQKA 662
+ L + ++
Sbjct: 197 QALLDACAGRRTQLVDT 213
Score = 36.1 bits (83), Expect = 0.031
Identities = 18/169 (10%), Positives = 47/169 (27%), Gaps = 6/169 (3%)
Query: 669 YLTDVEKIGTWLQDAEAKIQDRTLP--PQTLIQFIQQLEGELIDMKDKLAQMTRTGNEIS 726
+ + + W+ + E + + + + + N
Sbjct: 6 LKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFI 65
Query: 727 QH--TESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLSLHAEVMKWV 784
+ + E A I E + ++ R + + D ++F + E++ +
Sbjct: 66 ERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGA-EILGLI 124
Query: 785 SEKRTFLSEPYDSNNLSDLRVKLNSYTELTSFVNKHTRKVKDLSKNTQE 833
EK L E + S +T ++ +V+
Sbjct: 125 DEKHRELPEDV-GLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATR 172
Score = 31.5 bits (71), Expect = 0.78
Identities = 18/151 (11%), Positives = 45/151 (29%), Gaps = 8/151 (5%)
Query: 6 QQSQAATQAKQILDQFDTLLGKVKSLLADREDQYKD---HRVYKEACDELLTWLTRARDK 62
A + D + + + L+ R Y E+L + +
Sbjct: 71 AGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRE 130
Query: 63 IPSMKQKSLSDKLAIENIVAPLESLLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAVKN 122
+P S E+ + + + V+ Q + + + + A++N
Sbjct: 131 LPEDVGLDAST---AESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQN 187
Query: 123 EMKALNMKMHWIDLLNKLEHEKNRLGAAIQA 153
+ + ++ W LL+ + +L
Sbjct: 188 KEQEVSAA--WQALLDACAGRRTQLVDTADK 216
Score = 29.2 bits (65), Expect = 4.5
Identities = 10/60 (16%), Positives = 27/60 (45%)
Query: 499 ENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQW 558
++ DV ++ E + I+++ + ++ W L+ RR +L + A+++
Sbjct: 158 LLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADKF 217
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin
repeat structural protein, crosslinking; 2.22A {Homo
sapiens}
Length = 210
Score = 35.3 bits (81), Expect = 0.041
Identities = 20/178 (11%), Positives = 64/178 (35%), Gaps = 14/178 (7%)
Query: 661 KAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPP-----QTLIQFIQQLEGELIDMKDKL 715
+ + L ++ + W+++ + ++ + + + L + + + K+
Sbjct: 2 SHMELEDSTLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKI 61
Query: 716 AQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFLS 775
+ ++S R + + Q ++ R + + ++ F++
Sbjct: 62 ERARSDEGQLSP-----ATRGAYRDCLGRLDLQYAKLLNSSKARLRSL----ESLHSFVA 112
Query: 776 LHAEVMKWVSEKRTFLSEPYDSNNLSDLRVKLNSYTELTSFVNKHTRKVKDLSKNTQE 833
+ + W++EK S+ +++ K SY+ L + +K+K+L
Sbjct: 113 AATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDR 170
Score = 30.7 bits (69), Expect = 1.3
Identities = 24/209 (11%), Positives = 66/209 (31%), Gaps = 11/209 (5%)
Query: 457 LREQFTTLIMQIVGFITETTARV--GEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEI 514
L + + ++ ++ E RV E + +V+ ++ + + I+ +
Sbjct: 6 LEDSTLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSH-RGLHQSIEEFRAKIERA 64
Query: 515 K---PKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERT 571
+ + + D + R++ Q+ L+ R L E +
Sbjct: 65 RSDEGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSL----ESLHSFVAAATKELMW 120
Query: 572 LKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKKDG 631
L E D +T K +L+ +E ++ K+ ++ +++
Sbjct: 121 LNEKEEEEVGFD-WSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPAR 179
Query: 632 LDLQKRITALELLSEELNSKLEEKGKEVQ 660
++ AL+ + ++
Sbjct: 180 PTVESFQAALQTQWSWMLQLCCCIEAHLK 208
Score = 29.2 bits (65), Expect = 4.7
Identities = 21/142 (14%), Positives = 43/142 (30%), Gaps = 7/142 (4%)
Query: 7 QSQAATQAKQILDQFDTLLGKVKSLLADREDQYKDHRVYKEACDELLTWLTRARDKIPSM 66
+ L + D K+ + R + + A + L WL +K
Sbjct: 72 SPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHSFVAAATKELMWL---NEKEEEE 128
Query: 67 KQKSLSDKLA-IENIVAPLESLLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAVKNEMK 125
SD+ + +L+ + E ++ +Q G+ +L P E
Sbjct: 129 VGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPA---RPTVESF 185
Query: 126 ALNMKMHWIDLLNKLEHEKNRL 147
++ W +L + L
Sbjct: 186 QAALQTQWSWMLQLCCCIEAHL 207
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix
bundle, alpha helix repeat, helical linker, actin
capping; 2.80A {Homo sapiens} PDB: 1owa_A
Length = 161
Score = 33.0 bits (75), Expect = 0.21
Identities = 21/164 (12%), Positives = 59/164 (35%), Gaps = 8/164 (4%)
Query: 499 ENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQW 558
E + ++ ++ A++ I+++ + + ++ + + R +KL E +
Sbjct: 5 EQFPKETVVESSGPKVLETAEE-----IQERRQEVLTRYQSFKERVAERGQKL-EDSYHL 58
Query: 559 EQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVSQIST 618
+ ++ + + E D + + +SL V+++ +S++
Sbjct: 59 QVFKRDADDLGKWIM--EKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEK 116
Query: 619 LAAPIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQKA 662
+ + I L L + L EKG ++ +A
Sbjct: 117 TREERFTMGHSAHEETKAHIEELRHLWDLLLELTLEKGDQLLRA 160
Score = 29.9 bits (67), Expect = 1.9
Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 7/138 (5%)
Query: 13 QAKQILDQFDTLLGKVKSLLADREDQYKDHRVYKEACDELLTWLTRARDKIPSMKQKSLS 72
+ +++L ++ + +V ED Y +K D+L W+ +K+ + KS
Sbjct: 30 RRQEVLTRYQSFKERVAERGQKLEDSYHLQV-FKRDADDLGKWI---MEKVNILTDKSYE 85
Query: 73 DKLAIENIVAPLESLLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAVKNEMKALNMKMH 132
D I+ +SL + L+ ++ T E + K ++ L
Sbjct: 86 DPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTRE-ERFTMGHSAHEETKAHIEELR--HL 142
Query: 133 WIDLLNKLEHEKNRLGAA 150
W LL + ++L A
Sbjct: 143 WDLLLELTLEKGDQLLRA 160
Score = 28.0 bits (62), Expect = 7.7
Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
Query: 715 LAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTGCDDAWKHFL 774
+ Q + S + E IQ + Q + ++ ER +++ + F
Sbjct: 4 MEQFPKETVVESSGPKVLETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYH-LQVFK 62
Query: 775 SLHAEVMKWVSEKRTFLSEPYDSNNLSDLRVKLNSYTELTSFVNKHTRKVKDLSKNTQE 833
++ KW+ EK L++ + ++++ K + L + V +R + +L K +E
Sbjct: 63 RDADDLGKWIMEKVNILTDK-SYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREE 120
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple
helical bundle, actin cappin binding, alternative
splicing, calcium; 2.30A {Homo sapiens}
Length = 149
Score = 32.2 bits (73), Expect = 0.29
Identities = 19/140 (13%), Positives = 57/140 (40%), Gaps = 3/140 (2%)
Query: 521 ESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVE 580
E+ + I+++ +++ D+++ RR+KL E + +++ ++ E+ ++
Sbjct: 12 ETAEDIQERRQQVLDRYHRFKELSTLRRQKL-EDSYRFQFFQRDAEELEKWIQEKLQIAS 70
Query: 581 QCDGVVHSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKKDGLDLQKRITA 640
+ L + ++ V++ + ++ ++ ++ R+
Sbjct: 71 DENY--KDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLME 128
Query: 641 LELLSEELNSKLEEKGKEVQ 660
L E L K+ EKG ++
Sbjct: 129 LHRQWELLLEKMREKGIKLL 148
Score = 28.3 bits (63), Expect = 6.6
Identities = 19/140 (13%), Positives = 50/140 (35%), Gaps = 9/140 (6%)
Query: 11 ATQAKQILDQFDTLLGKVKSLLADRE---DQYKDHRVYKEACDELLTWLTRARDKIPSMK 67
A ++ Q + K L R + + ++ +EL W+ ++K+
Sbjct: 14 AEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWI---QEKLQIAS 70
Query: 68 QKSLSDKLAIENIVAPLESLLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAVKNEMKAL 127
++ D ++ + ++ + + + TG ++ S ++ + L
Sbjct: 71 DENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGN-LMISEGHFASETIRTRLMEL 129
Query: 128 NMKMHWIDLLNKLEHEKNRL 147
+ W LL K+ + +L
Sbjct: 130 H--RQWELLLEKMREKGIKL 147
Score = 27.9 bits (62), Expect = 7.4
Identities = 13/110 (11%), Positives = 40/110 (36%), Gaps = 7/110 (6%)
Query: 450 KLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLND 509
KL+ + F ++ +I E + + T + + + ++E+ +
Sbjct: 41 KLEDSYRFQ-FFQRDAEELEKWIQEKLQIASDENYKDPTNLQGKLQKHQAFEAEVQANSG 99
Query: 510 VWKEIKPKADQ------ESDQLIEDQIERINDQWNTLVGDLDTRREKLTE 553
++ + + + I ++ ++ QW L+ + + KL +
Sbjct: 100 AIVKLDETGNLMISEGHFASETIRTRLMELHRQWELLLEKMREKGIKLLQ 149
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.31
Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 17/70 (24%)
Query: 181 AIRLRLEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPC---- 236
+IR E+Q ++++ +A + ++ E W + K + +W ++
Sbjct: 86 SIRKWREEQRKRLQEL-----DAA-----SKVMEQE---WREKAKKDLEEWNQRQSEQVE 132
Query: 237 KIKAESAQAE 246
K K + A+
Sbjct: 133 KNKINNRIAD 142
Score = 29.4 bits (65), Expect = 4.0
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 646 EELNSKLEEKGKEVQKAKA-MRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTLI---QFI 701
EE +L+E + + R D+E+ W Q +++ + I F
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEE---WNQRQSEQVEKNKI--NNRIADKAFY 146
Query: 702 QQLEGELI 709
QQ + ++I
Sbjct: 147 QQPDADII 154
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 33.0 bits (74), Expect = 0.44
Identities = 42/369 (11%), Positives = 105/369 (28%), Gaps = 41/369 (11%)
Query: 466 MQIVGFITETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQESDQL 525
M V A ++ + + LN D +
Sbjct: 364 MVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSI 423
Query: 526 IED-QIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDG 584
+ + T+ + E L E ++ +L+ E T + ++
Sbjct: 424 LTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQ 483
Query: 585 VVHSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPI---VKFLKKDGLDLQKRI--- 638
S + ++E + ++ Q+ + L K +L I
Sbjct: 484 RTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSA 543
Query: 639 -TALELLSEELNSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTL 697
A + E+ + L+ + + K R D++ + + +
Sbjct: 544 NPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEE 603
Query: 698 IQFIQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLN 757
+ +L+ + K+ + + + ++ + + + +M+Q + N
Sbjct: 604 ALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQE----------FSKMKQSNNEAN 653
Query: 758 ERKKEVTGCDDAWKHFLSLHAEVMKWVSEKRTFLSEPYDSNNLSDLRVKLNSYTELTSFV 817
R++ + A+ +F+ L ++L+ Y ELT +
Sbjct: 654 LREEVLKNLATAYDNFVELV-----------------------ANLKEGTKFYNELTEIL 690
Query: 818 NKHTRKVKD 826
+ K D
Sbjct: 691 VRFQNKCSD 699
Score = 29.9 bits (66), Expect = 4.1
Identities = 25/179 (13%), Positives = 63/179 (35%), Gaps = 6/179 (3%)
Query: 161 ISRPSSPLESAHPPVPDREIAIRLRLEDQIEQVESKLSQLNEAEAGLEG-EEKLKAEVLA 219
I P + +P A ++ + + ++S LS L+E + EG E LK+
Sbjct: 526 IVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNF- 584
Query: 220 WIDDQKSLITDWEKKPCKIKAESAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQ 279
D +T + + + E+ ++ +Q+ + ++ L + I + +Q
Sbjct: 585 --DMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLK--KQEGLLKNIQVSHQ 640
Query: 280 AIGKKDSQQKVIESYKADVNELDKQLDAISLIEGTINQAIGKKDSQQKVIESYKADVND 338
K + + L D + + + + +++ ++ +D
Sbjct: 641 EFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSD 699
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle,
spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Length = 224
Score = 31.9 bits (72), Expect = 0.70
Identities = 30/216 (13%), Positives = 72/216 (33%), Gaps = 11/216 (5%)
Query: 450 KLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNS--ATVQEKIDKYDKENQSEIDML 507
L L E + ++ ++ E ++ + S +V+ ++ + K I+
Sbjct: 14 LLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLENH-KNVHRAIEEF 72
Query: 508 NDVWKEIKPKADQ---ESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKL 564
KE K Q D++ R+ Q+ L+ + L L +
Sbjct: 73 ESSLKEAKISEIQMTAPLKLSYTDKLHRLESQYAKLLNTSRNQERHLDTLHNFVTRATNE 132
Query: 565 MSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIV 624
+ L E S D + + + KS L+ +E ++ + + +A ++
Sbjct: 133 LIW----LNEKEESEVAYD-WSERNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQLL 187
Query: 625 KFLKKDGLDLQKRITALELLSEELNSKLEEKGKEVQ 660
L ++ A++ + + + +Q
Sbjct: 188 LENHPARLTIEAYRAAMQTQWSWILQLCQCVEQHIQ 223
Score = 30.0 bits (67), Expect = 2.4
Identities = 17/188 (9%), Positives = 65/188 (34%), Gaps = 14/188 (7%)
Query: 651 KLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPP-----QTLIQFIQQLE 705
K K + + + V+ + W+ + + ++ ++ ++ + +
Sbjct: 7 KPLLKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLENHKNVH 66
Query: 706 GELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKKEVTG 765
+ + + L + + +++ + + Q ++ +++ +
Sbjct: 67 RAIEEFESSLKEAKISEIQMTA-----PLKLSYTDKLHRLESQYAKLLNTSRNQERHL-- 119
Query: 766 CDDAWKHFLSLHAEVMKWVSEKRTFLSEPYDSNNLSDLRVKLNSYTELTSFVNKHTRKVK 825
D +F++ + W++EK S S + K + + EL + + +K
Sbjct: 120 --DTLHNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKEESIK 177
Query: 826 DLSKNTQE 833
+ + ++
Sbjct: 178 AVQEIAEQ 185
Score = 29.2 bits (65), Expect = 4.3
Identities = 20/142 (14%), Positives = 47/142 (33%), Gaps = 7/142 (4%)
Query: 7 QSQAATQAKQILDQFDTLLGKVKSLLADREDQYKDHRVYKEACDELLTWLTRARDKIPSM 66
+ L + ++ K+ + ++E + L WL +K S
Sbjct: 87 TAPLKLSYTDKLHRLESQYAKLLNTSRNQERHLDTLHNFVTRATNELIWL---NEKEESE 143
Query: 67 KQKSLSDKL-AIENIVAPLESLLNKKAQGELLVEHMQTTGEVVLASTSPDGQTAVKNEMK 125
S++ ++ + L+ + Q E ++ +Q E +L P + E
Sbjct: 144 VAYDWSERNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQLLLENHPA---RLTIEAY 200
Query: 126 ALNMKMHWIDLLNKLEHEKNRL 147
M+ W +L + + +
Sbjct: 201 RAAMQTQWSWILQLCQCVEQHI 222
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 31.0 bits (70), Expect = 2.3
Identities = 37/345 (10%), Positives = 98/345 (28%), Gaps = 38/345 (11%)
Query: 374 TLENSLQTPLEQLQDKAGQVKALLSNLDAQFVDEQKLLDEINLWKNSQSDEDLAHLADSI 433
LE S + DK + L + +L
Sbjct: 707 DLERSTIDAITLFGDKNTKNVVLEKSYTEYMEGFTDAATGEAKRGFMTVVSELEQRFPDP 766
Query: 434 KPLDEVVERIEN----NAVPKLKSLLLLREQFTTLIMQIVGFITETTARVGEVDGNSATV 489
++ E+ + + +++L ++F TL +++ A +
Sbjct: 767 TSIESEKEKKDFVKLFGEYLRAENILQNYDEFATLKALQQIDLSDPVAVEKFKAEHYVDD 826
Query: 490 QEKIDKYDKENQSEIDM---------LNDVWKEIKPKADQESDQLIEDQIERINDQWNTL 540
++ + ++ + + D + K +E D + D +
Sbjct: 827 EKFAELQTIRLPADRKIQDYRSAYNDIRDWQRREKEAEKKEKSTTDWDDVVFEVDLLKSQ 886
Query: 541 VGDLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELE 600
+LD + E Q + +++ E + + +S+ N+++
Sbjct: 887 EINLDYILGLIFEHNRQNKGKGEMI---EEVKRLIRSSLG--------------NRAKEG 929
Query: 601 SLLGTVESEK-PKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEELNSKLEEKGKEV 659
++ ++ + +++ F ++ ++ E L +E N E+ K
Sbjct: 930 LVVDFIQQTNLDDLPDKASIIDAFFTFAQR------EQQREAEALIKEENLN-EDAAKRY 982
Query: 660 QKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPPQTLIQFIQQL 704
+ R + ++ L Q + Q I
Sbjct: 983 IRTSLKREYATENGTELNETLPKLSPLNPQYKTKKQAVFQKIVSF 1027
Score = 30.7 bits (69), Expect = 2.9
Identities = 24/176 (13%), Positives = 62/176 (35%), Gaps = 7/176 (3%)
Query: 177 DREIAIRLRLEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPC 236
I L +E+ +++ +E A L+ + + I DW+++
Sbjct: 802 KALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRKIQDYRSAYNDIRDWQRREK 861
Query: 237 KIKAESAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKA 296
+ + + + +L+ Q E L ++ LI + + + ++IE K
Sbjct: 862 EAEKKEKSTTDWDDVVFEVDLLKSQ-----EINLDYILGLIFEHNRQNKGKGEMIEEVKR 916
Query: 297 DVNELDKQLDAISLIEGTINQA-IGKKDSQQKVIESYKADVND-LDKQLDAISKKL 350
+ L+ I Q + + +I+++ ++ +A+ K+
Sbjct: 917 LIRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQREAEALIKEE 972
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 30.1 bits (67), Expect = 2.8
Identities = 27/169 (15%), Positives = 63/169 (37%), Gaps = 4/169 (2%)
Query: 633 DLQKRITALELLSEELNSKLEEKGKEVQKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTL 692
L K I +LE L E L++ + + + + + E +QD
Sbjct: 15 HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDT-- 72
Query: 693 PPQTLIQFIQQLEGELIDMKDKLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQI 752
I IQ+ E+ ++ + + ++N E +Q+ I +E+ + +
Sbjct: 73 --NAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDL 130
Query: 753 EMKLNERKKEVTGCDDAWKHFLSLHAEVMKWVSEKRTFLSEPYDSNNLS 801
+ ++ E +K + ++ + E + + +K+ L E + S
Sbjct: 131 KKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYS 179
Score = 28.5 bits (63), Expect = 8.9
Identities = 22/151 (14%), Positives = 54/151 (35%), Gaps = 6/151 (3%)
Query: 182 IRLRLEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCKIKAE 241
R L+ + E+K + E + ++ + D + I +K K+
Sbjct: 30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQK---KMSEI 86
Query: 242 SAQAEIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKADVNEL 301
++ E+ + + K+ ++ L I + K++ +K + + EL
Sbjct: 87 KSERELRSLN--IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALEL 144
Query: 302 DKQLDA-ISLIEGTINQAIGKKDSQQKVIES 331
+ ++ + I+ T KK+ + E
Sbjct: 145 ESLVENEVKNIKETQQIIFKKKEDLVEKTEP 175
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel
inter domain, chaperone; 3.94A {Mycobacterium
tuberculosis} PDB: 3m9d_A
Length = 251
Score = 29.8 bits (66), Expect = 3.6
Identities = 13/76 (17%), Positives = 33/76 (43%)
Query: 486 SATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLD 545
S+ ++++ +E + L + P +E +I+ + + + L+ L
Sbjct: 19 SSGDAAELEQLRREAAVLREQLENAVGSHAPTRSARDIHQLEARIDSLAARNSKLMETLK 78
Query: 546 TRREKLTELAEQWEQL 561
R++L L E+ ++L
Sbjct: 79 EARQQLLALREEVDRL 94
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 29.7 bits (67), Expect = 4.2
Identities = 20/201 (9%), Positives = 52/201 (25%), Gaps = 30/201 (14%)
Query: 485 NSATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQE------------SDQLIEDQIER 532
E D YD E + + + K K ++ + I+ +
Sbjct: 68 RGVLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKIDGKTVS 127
Query: 533 INDQWNTLVGDLDTRREKLT-----ELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVH 587
D L + + K ++ + Q +S + G ++ + +
Sbjct: 128 YKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKE 187
Query: 588 SLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVK-------------FLKKDGLDL 634
+ L+++ +E + E + + L
Sbjct: 188 KIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQL 247
Query: 635 QKRITALELLSEELNSKLEEK 655
+ + ++ K +E
Sbjct: 248 KAEEKKILNQFLKIKKKRKEL 268
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES;
1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A
2l3t_A 3gxw_A 3gxx_A
Length = 197
Score = 29.1 bits (65), Expect = 4.2
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 13/96 (13%)
Query: 422 SDEDLAHLADSIKPLD------EVVERIENNAVPKLKSLLLLREQFTTLIMQIVGFITET 475
S HLA + K ++ E + N + K L++ +++ L IV ++
Sbjct: 36 SSRGDDHLAITWKLDKDLFQHVDIQELEKENPLALGKVLVVEGQRYHDLDQIIVEYLQNK 95
Query: 476 TARVGEV-------DGNSATVQEKIDKYDKENQSEI 504
+ E+ G V + I+ Y K N +
Sbjct: 96 IRLLNELTSNEKFKAGTKKEVVKFIEDYSKVNPKKS 131
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin,
synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1,
coiled coil; 1.60A {Saccharomyces cerevisiae}
Length = 64
Score = 27.1 bits (60), Expect = 4.7
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 299 NELDKQLDAISLIEGTINQ---AIGKK-DSQQKVIESYKADVNDLDKQLDAISKKLDSV 353
E+D+ LD I + + + GK+ DSQQK + + + +DLD L + +L +
Sbjct: 6 LEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAGI 64
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 29.5 bits (66), Expect = 4.9
Identities = 19/149 (12%), Positives = 42/149 (28%), Gaps = 25/149 (16%)
Query: 345 AISKKLDSVEHGQGVLCP-----------------VKANTLKDISNTLENSLQTPLEQLQ 387
A ++ G CP +L+DI + +EN + ++
Sbjct: 3 ATRDNCCILDERFGSYCPTTCGIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIK 62
Query: 388 DKAGQVKALLSNLDAQFVDEQKLLDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNA 447
S+ ++ E++ SI D + ++
Sbjct: 63 AIQLTYNPDESSKPNMIDAATLKSRKM--------LEEIMKYEASILTHDSSIRYLQEIY 114
Query: 448 VPKLKSLLLLREQFTTLIMQIVGFITETT 476
+ ++ L+E+ L Q +T
Sbjct: 115 NSNNQKIVNLKEKVAQLEAQCQEPCKDTV 143
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering,
endoplasmic reticulum, ER-golgi transport, membrane,
phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Length = 706
Score = 29.9 bits (66), Expect = 5.0
Identities = 14/110 (12%), Positives = 43/110 (39%), Gaps = 2/110 (1%)
Query: 543 DLDTRREKLTELAEQWEQLEKLMSSSERTLKGVETSVEQCDGVVHSLAVLTQNKSELESL 602
DL +++ ++ + +L + + +++L +T V + + + + + LE L
Sbjct: 11 DLLNINDRIKQVQNERNELASKLQNLKQSLASNDTEVALSEVIAQDIIEVGASVEGLEQL 70
Query: 603 LGTVESEKPKVSQISTLAAPIVKFLKKDGLDLQKRITALELLSEELNSKL 652
+ ++++ +A + L L+ L+E+ +
Sbjct: 71 RAK-YGDLQILNKLEKVAVQQTQMQAGVD-KLDSFERQLDELAEQPPDQF 118
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable
chaperon unknown function; 3.10A {Leptospira interrogans
serovar copenhaorganism_taxid}
Length = 325
Score = 29.1 bits (65), Expect = 6.3
Identities = 15/122 (12%), Positives = 52/122 (42%)
Query: 186 LEDQIEQVESKLSQLNEAEAGLEGEEKLKAEVLAWIDDQKSLITDWEKKPCKIKAESAQA 245
E ++ K ++L + + + + ++ ++ D+ + E++ ++ + +
Sbjct: 26 SELDLDDATEKYNRLQKHLKHEDYRKSFRTRIIDFLIDRAIVDVVAEEESIQVNEQRVDS 85
Query: 246 EIAKMQDLKGVVLQKQTEGLLEDQLAELITLINQAIGKKDSQQKVIESYKADVNELDKQL 305
EI K ++ G+ +KQ E +E L + + + ++++ A ++++
Sbjct: 86 EIEKRMEVMGITNRKQFEKTMETSSGMPFELWVTELPYQIKKGQLLQLKIAVPPPNEQEI 145
Query: 306 DA 307
+
Sbjct: 146 RS 147
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 7.9
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 22/42 (52%)
Query: 549 EKLTELAEQWEQLEKLMSSSERTLK----------GVETSVE 580
EK + L+KL +S LK ++ ++E
Sbjct: 18 EK--------QALKKLQAS----LKLYADDSAPALAIKATME 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.127 0.339
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,869,958
Number of extensions: 718648
Number of successful extensions: 1836
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1724
Number of HSP's successfully gapped: 216
Length of query: 849
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 747
Effective length of database: 3,853,851
Effective search space: 2878826697
Effective search space used: 2878826697
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.0 bits)