RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4475
(849 letters)
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 32.8 bits (74), Expect = 0.067
Identities = 17/146 (11%), Positives = 52/146 (35%), Gaps = 4/146 (2%)
Query: 512 KEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQLEKLMSSSERT 571
+ PK + +++ I+++ + + ++ + + R +KL + + + ++ +
Sbjct: 11 ESSGPKVLETAEE-IQERRQEVLTRYQSFKERVAERGQKLED-SYHLQVFKRDADDLGKW 68
Query: 572 LKGVETSVEQCDGVVHSLAVLTQNKSELESLLGTVESEKPKVSQISTLAAPIVKFLKKDG 631
+ + + + +SL V+++ +S++
Sbjct: 69 IMEKVNILTDKS--YEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAH 126
Query: 632 LDLQKRITALELLSEELNSKLEEKGK 657
+ + I L L + L EKG
Sbjct: 127 EETKAHIEELRHLWDLLLELTLEKGD 152
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 31.3 bits (69), Expect = 0.42
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 501 QSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAEQWEQ 560
+S+ + N W E + A + + E + R+ D + +L+ L+ L E
Sbjct: 1 KSKTEYYN-AWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPH 59
Query: 561 LEKL 564
LE L
Sbjct: 60 LESL 63
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 104
Score = 28.0 bits (62), Expect = 1.8
Identities = 14/98 (14%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 669 YLTDVEKIGTWLQDAEAKIQDRTLPP-----QTLIQFIQQLEGELIDMKDKLAQMTRTGN 723
++ +VE+ W+ + + Q L++ + E + KD++ + G
Sbjct: 2 FVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGE 61
Query: 724 EISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKK 761
++ + ++N I + + ++ +E +RK
Sbjct: 62 DLIK--KNNHHVENITAKMKGLKGKVSDLEKAAAQRKA 97
Score = 26.1 bits (57), Expect = 6.6
Identities = 11/87 (12%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Query: 473 TETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQ------ESDQLI 526
T + A +Q + K+ + +++ + D ++ + + I
Sbjct: 16 KMTLVASEDYGDTLAAIQGLLKKH-EAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENI 74
Query: 527 EDQIERINDQWNTLVGDLDTRREKLTE 553
+++ + + + L R+ KL E
Sbjct: 75 TAKMKGLKGKVSDLEKAAAQRKAKLDE 101
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 101
Score = 27.7 bits (61), Expect = 2.3
Identities = 15/98 (15%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 669 YLTDVEKIGTWLQDAEAKIQDRTLPP-----QTLIQFIQQLEGELIDMKDKLAQMTRTGN 723
+ D++ +W+++ + + Q L + ++LE EL + + + TG
Sbjct: 3 FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGK 62
Query: 724 EISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKK 761
++S ++ + IQ + F + ++++ R +
Sbjct: 63 KLSD--DNTIGKEEIQQRLAQFVDHWKELKQLAAARGQ 98
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 114
Score = 27.7 bits (61), Expect = 2.6
Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 457 LREQFTTLIMQIVGFITETTARVG-EVDGNSATVQEKIDKYDK------ENQSEIDMLND 509
LR QF I +I + + +++++++ + ++ ID L
Sbjct: 6 LRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEG 65
Query: 510 VWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKL 551
+ I +A ++ +E I W L+ + ++
Sbjct: 66 DHQLI-QEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEV 106
Score = 26.2 bits (57), Expect = 7.3
Identities = 7/63 (11%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 771 KHFLSLHAEVMKWVSEKRTFLSEPYDSNNLSDLRVKLNSYTELTSFVNKHTRKVKDLSKN 830
+ F + + W+ K ++ L ++N + + + + L +
Sbjct: 8 RQFAAQANAIGPWIQNKMEEIARS-SIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGD 66
Query: 831 TQE 833
Q
Sbjct: 67 HQL 69
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 110
Score = 27.7 bits (61), Expect = 2.7
Identities = 15/98 (15%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 669 YLTDVEKIGTWLQDAEAKIQDRTLPP-----QTLIQFIQQLEGELIDMKDKLAQMTRTGN 723
+ T ++ WL + EA + L++ Q LE ++ +D+L + +
Sbjct: 7 FNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQAD 66
Query: 724 EISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKK 761
+ S + + ++ + + Q+I+ R+
Sbjct: 67 SLMTS--SAFDTSQVKDKRETINGRFQRIKSMAAARRA 102
Score = 26.1 bits (57), Expect = 8.7
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 473 TETTARVGEVDGNSATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQ------ESDQLI 526
E + + A+V + K+ + +++I D K++ +AD +
Sbjct: 21 VEALLASEDYGKDLASVNNLLKKH-QLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQV 79
Query: 527 EDQIERINDQWNTLVGDLDTRREKLTE 553
+D+ E IN ++ + RR KL E
Sbjct: 80 KDKRETINGRFQRIKSMAAARRAKLNE 106
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 27.6 bits (61), Expect = 2.9
Identities = 20/116 (17%), Positives = 47/116 (40%), Gaps = 10/116 (8%)
Query: 450 KLKSLLLLREQFTTLIMQIVGFITETTARVGEVD---GNSATVQEKIDKYD------KEN 500
+L+ L L E+F + + + D + V+ + K++ +
Sbjct: 8 RLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAH 67
Query: 501 QSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRREKLTELAE 556
Q ++ + + +E+ ++ + D+ ++I DQW+ L RRE L + +
Sbjct: 68 QDRVEQIAAIAQELNELDYHDAVN-VNDRCQKICDQWDRLGTLTQKRREALERMEK 122
Score = 27.2 bits (60), Expect = 4.6
Identities = 11/108 (10%), Positives = 38/108 (35%), Gaps = 8/108 (7%)
Query: 660 QKAKAMRAAYLTDVEKIGTWLQDAEAKIQDRTLPP------QTLIQFIQQLEGELIDMKD 713
++ + + + TW E + + + L++ + E +L +D
Sbjct: 10 ERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQD 69
Query: 714 KLAQMTRTGNEISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKK 761
++ Q+ E+++ + + +Q ++ +R++
Sbjct: 70 RVEQIAAIAQELNE--LDYHDAVNVNDRCQKICDQWDRLGTLTQKRRE 115
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 106
Score = 27.4 bits (60), Expect = 3.1
Identities = 13/103 (12%), Positives = 37/103 (35%), Gaps = 4/103 (3%)
Query: 45 YKEACDELLTWLTRARDKIPSMKQKSLSDKLAIENIVAPLESLLNKKAQGELLVEHMQTT 104
+ + D+ WL+ + + S + E ++ + ++ + + ++ +
Sbjct: 4 FLQDLDDFQAWLSITQKAVAS--EDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 61
Query: 105 GEVVLASTSPDGQTAVKNEMKALNMKMHWIDLLNKLEHEKNRL 147
GE V+ + + ++ L+ W L E + L
Sbjct: 62 GEKVIQGQTDPEYLLLGQRLEGLDTG--WDALGRMWESRSHTL 102
Score = 26.2 bits (57), Expect = 6.7
Identities = 14/98 (14%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 669 YLTDVEKIGTWLQDAEAKIQDRTLP-----PQTLIQFIQQLEGELIDMKDKLAQMTRTGN 723
+L D++ WL + + +P + L+Q ++ E+ +D ++ +G
Sbjct: 4 FLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGE 63
Query: 724 EISQHTESNEERALIQSTILSFTEQMQQIEMKLNERKK 761
++ Q +++ E L+ + + R
Sbjct: 64 KVIQG-QTDPEYLLLGQRLEGLDTGWDALGRMWESRSH 100
Score = 25.9 bits (56), Expect = 9.0
Identities = 8/64 (12%), Positives = 23/64 (35%)
Query: 490 QEKIDKYDKENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVGDLDTRRE 549
I +Q + + +++ L+ ++E ++ W+ L ++R
Sbjct: 41 HAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSH 100
Query: 550 KLTE 553
L +
Sbjct: 101 TLAQ 104
>d1ci4a_ a.60.5.1 (A:) Barrier-to-autointegration factor, BAF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 27.0 bits (60), Expect = 3.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 635 QKRITALELLSEELNSKLEEKGKEVQKAKAMRAAYLT---DVEKIGTWLQD 682
+K + +L + E L KLEE+G + KA + +L D + WL+D
Sbjct: 17 EKPVGSLAGIGEVLGKKLEERGFD--KAYVVLGQFLVLKKDEDLFREWLKD 65
>d1mhyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit
{Methylosinus trichosporium [TaxId: 426]}
Length = 383
Score = 28.3 bits (63), Expect = 4.9
Identities = 6/61 (9%), Positives = 21/61 (34%)
Query: 483 DGNSATVQEKIDKYDKENQSEIDMLNDVWKEIKPKADQESDQLIEDQIERINDQWNTLVG 542
N + + Y + + + ++ +++ A + + ++R+ W
Sbjct: 304 AHNRTFLNAWTEHYLASSVAALKDFVGLYAKVEKVAGATDSAGVSEALQRVFGDWKIDYA 363
Query: 543 D 543
D
Sbjct: 364 D 364
>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 247
Score = 27.5 bits (59), Expect = 6.5
Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 124 MKALNMKMHWIDLLNKLEHEKNRLGAAIQAGEAATACISRPSSPLESAHPPVPDREIAIR 183
+ + D + + + + + AG AT I++ P+P ++
Sbjct: 172 HCCDLLGVQPGDCVMVGDTLETDIQGGLNAGLKATVWINKSGRVPL-TSSPMPHYMVSSV 230
Query: 184 LRLEDQIEQVESKLS 198
L L ++ ++ K+S
Sbjct: 231 LELPALLQSIDCKVS 245
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 27.2 bits (58), Expect = 9.6
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 411 LDEINLWKNSQSDEDLAHLADSIKPLDEVVERIENNAVPKLKSLLLLREQFTTLIMQIVG 470
L E++L N D + L +S++ L+ L+L ++ + +
Sbjct: 399 LRELDLSNNCLGDAGILQLVESVR-----------QPGCLLEQLVLYDIYWSEEMEDRLQ 447
Query: 471 FITE 474
+ +
Sbjct: 448 ALEK 451
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.127 0.339
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,785,090
Number of extensions: 127937
Number of successful extensions: 401
Number of sequences better than 10.0: 1
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 65
Length of query: 849
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 756
Effective length of database: 1,130,706
Effective search space: 854813736
Effective search space used: 854813736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.1 bits)