Query psy4476
Match_columns 266
No_of_seqs 237 out of 1620
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 18:06:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 99.9 8.2E-28 2.8E-32 239.2 15.3 170 8-195 74-245 (646)
2 2gk6_A Regulator of nonsense t 99.9 4.1E-26 1.4E-30 226.5 15.2 172 11-195 62-236 (624)
3 2wjy_A Regulator of nonsense t 99.9 3.4E-25 1.1E-29 225.6 15.6 172 11-195 238-412 (800)
4 2xzl_A ATP-dependent helicase 99.9 1.4E-24 4.6E-29 221.2 14.3 171 12-195 242-416 (802)
5 3e1s_A Exodeoxyribonuclease V, 99.7 4.2E-18 1.4E-22 167.7 3.2 137 89-245 148-294 (574)
6 1w36_D RECD, exodeoxyribonucle 99.6 5.4E-17 1.8E-21 160.7 1.1 143 89-245 108-277 (608)
7 3upu_A ATP-dependent DNA helic 99.2 2.5E-12 8.6E-17 122.7 2.7 104 131-243 23-141 (459)
8 3lfu_A DNA helicase II; SF1 he 98.8 2.8E-10 9.7E-15 111.8 -2.8 85 132-223 8-102 (647)
9 1pjr_A PCRA; DNA repair, DNA r 98.1 2.5E-07 8.4E-12 93.1 -0.5 83 132-221 10-102 (724)
10 1uaa_A REP helicase, protein ( 98.1 2.8E-07 9.7E-12 91.5 -1.4 82 133-221 2-94 (673)
11 3b6e_A Interferon-induced heli 97.8 5.4E-06 1.8E-10 69.2 2.0 58 132-194 32-93 (216)
12 1vec_A ATP-dependent RNA helic 97.8 1.5E-05 5.2E-10 66.4 4.4 59 132-194 24-82 (206)
13 2gxq_A Heat resistant RNA depe 97.8 1.4E-05 4.9E-10 66.5 4.2 58 132-194 22-83 (207)
14 1qde_A EIF4A, translation init 97.8 1.4E-05 4.7E-10 67.6 4.0 59 132-194 35-93 (224)
15 1hv8_A Putative ATP-dependent 97.7 2.1E-05 7.1E-10 70.4 3.8 58 132-194 27-85 (367)
16 3vkw_A Replicase large subunit 97.7 6.4E-06 2.2E-10 78.6 0.1 75 149-244 162-248 (446)
17 2pl3_A Probable ATP-dependent 97.7 3E-05 1E-09 66.3 4.2 59 131-194 45-108 (236)
18 1t6n_A Probable ATP-dependent 97.6 3.1E-05 1.1E-09 65.3 4.1 58 132-194 35-93 (220)
19 2fz4_A DNA repair protein RAD2 97.6 3.2E-05 1.1E-09 67.1 3.8 54 131-194 91-144 (237)
20 3bor_A Human initiation factor 97.6 1.8E-05 6.3E-10 68.0 2.0 59 132-194 51-109 (237)
21 1rif_A DAR protein, DNA helica 97.6 2.1E-05 7.3E-10 69.3 2.4 57 132-194 112-168 (282)
22 1q0u_A Bstdead; DEAD protein, 97.5 3.2E-05 1.1E-09 65.4 2.7 59 132-194 25-83 (219)
23 3ber_A Probable ATP-dependent 97.5 5.7E-05 1.9E-09 65.7 4.1 59 132-194 64-122 (249)
24 3u4q_A ATP-dependent helicase/ 97.5 1.2E-05 4.2E-10 85.2 -0.4 62 131-195 8-69 (1232)
25 1s2m_A Putative ATP-dependent 97.5 5.8E-05 2E-09 68.8 4.2 59 132-194 42-100 (400)
26 3pey_A ATP-dependent RNA helic 97.5 5.7E-05 1.9E-09 68.2 3.9 59 132-194 26-86 (395)
27 2oxc_A Probable ATP-dependent 97.5 7.6E-05 2.6E-09 63.7 4.0 59 132-194 45-103 (230)
28 3iuy_A Probable ATP-dependent 97.4 9.6E-05 3.3E-09 62.7 4.2 58 132-194 41-105 (228)
29 3dkp_A Probable ATP-dependent 97.4 8.4E-05 2.9E-09 63.8 3.8 58 132-194 50-109 (245)
30 2z0m_A 337AA long hypothetical 97.4 0.00011 3.7E-09 65.0 4.5 53 132-194 15-67 (337)
31 1wrb_A DJVLGB; RNA helicase, D 97.4 0.00018 6.3E-09 62.0 5.7 60 130-194 42-111 (253)
32 3ly5_A ATP-dependent RNA helic 97.4 8.3E-05 2.8E-09 65.1 3.4 58 132-194 75-137 (262)
33 3fht_A ATP-dependent RNA helic 97.3 0.00011 3.9E-09 66.8 4.0 59 131-194 45-106 (412)
34 3eiq_A Eukaryotic initiation f 97.3 0.00011 3.7E-09 67.1 3.8 59 132-194 61-119 (414)
35 2j0s_A ATP-dependent RNA helic 97.3 0.00012 4.1E-09 67.1 4.1 58 132-194 58-116 (410)
36 1xti_A Probable ATP-dependent 97.3 0.0001 3.5E-09 66.8 3.4 58 132-194 29-87 (391)
37 3ec2_A DNA replication protein 97.3 0.0001 3.5E-09 60.4 3.0 35 135-173 16-59 (180)
38 1fuu_A Yeast initiation factor 97.3 7.7E-05 2.6E-09 67.6 2.1 59 132-194 42-100 (394)
39 3fe2_A Probable ATP-dependent 97.2 0.00022 7.6E-09 61.2 4.4 59 131-194 49-113 (242)
40 2oca_A DAR protein, ATP-depend 97.2 0.00011 3.8E-09 69.7 2.6 57 132-194 112-168 (510)
41 3h1t_A Type I site-specific re 97.2 0.00015 5.2E-09 70.4 3.2 58 132-194 177-246 (590)
42 2zpa_A Uncharacterized protein 97.1 8.6E-05 2.9E-09 74.1 0.5 90 133-246 175-271 (671)
43 3fmo_B ATP-dependent RNA helic 97.0 0.00031 1E-08 63.0 3.4 60 131-194 112-173 (300)
44 2i4i_A ATP-dependent RNA helic 97.0 0.00041 1.4E-08 63.5 4.2 33 132-164 36-68 (417)
45 1wp9_A ATP-dependent RNA helic 97.0 0.00033 1.1E-08 64.2 3.2 56 132-194 8-63 (494)
46 2w58_A DNAI, primosome compone 97.0 0.0003 1E-08 58.5 2.3 35 135-173 31-75 (202)
47 3tbk_A RIG-I helicase domain; 96.9 0.0005 1.7E-08 65.0 4.0 57 133-194 4-63 (555)
48 3fmp_B ATP-dependent RNA helic 96.9 0.00037 1.3E-08 65.7 3.1 59 131-194 112-173 (479)
49 2fwr_A DNA repair protein RAD2 96.9 0.0006 2E-08 64.0 4.4 53 132-194 92-144 (472)
50 3oiy_A Reverse gyrase helicase 96.9 0.0003 1E-08 64.9 2.1 55 133-194 21-75 (414)
51 2va8_A SSO2462, SKI2-type heli 96.9 0.00033 1.1E-08 69.7 2.5 58 131-194 28-86 (715)
52 4a2p_A RIG-I, retinoic acid in 96.9 0.00054 1.8E-08 65.0 3.8 58 132-194 6-66 (556)
53 3llm_A ATP-dependent RNA helic 96.9 0.0003 1E-08 60.4 1.9 57 134-194 62-120 (235)
54 3te6_A Regulatory protein SIR3 96.9 0.00019 6.4E-09 65.6 0.5 33 137-173 27-66 (318)
55 3fho_A ATP-dependent RNA helic 96.8 0.00017 5.7E-09 69.2 -0.5 58 132-194 140-200 (508)
56 1jbk_A CLPB protein; beta barr 96.7 0.00045 1.5E-08 55.4 1.8 29 136-164 28-59 (195)
57 3co5_A Putative two-component 96.7 0.00047 1.6E-08 54.8 1.7 16 149-164 28-43 (143)
58 3n70_A Transport activator; si 96.7 0.00058 2E-08 54.3 2.2 16 149-164 25-40 (145)
59 3bos_A Putative DNA replicatio 96.7 0.00079 2.7E-08 56.5 3.1 36 134-173 35-73 (242)
60 2chg_A Replication factor C sm 96.6 0.0007 2.4E-08 55.6 2.3 30 135-164 22-54 (226)
61 4b4t_K 26S protease regulatory 96.6 0.00038 1.3E-08 66.1 0.3 29 136-164 178-222 (428)
62 2db3_A ATP-dependent RNA helic 96.6 0.0014 4.8E-08 61.3 4.3 59 132-194 77-140 (434)
63 1ofh_A ATP-dependent HSL prote 96.6 0.00065 2.2E-08 59.6 1.7 16 149-164 51-66 (310)
64 2p65_A Hypothetical protein PF 96.5 0.00055 1.9E-08 55.0 0.9 29 136-164 28-59 (187)
65 3h4m_A Proteasome-activating n 96.5 0.00058 2E-08 59.7 1.1 30 135-164 22-67 (285)
66 3i5x_A ATP-dependent RNA helic 96.5 0.0012 4E-08 63.5 3.3 59 131-194 92-157 (563)
67 3b9p_A CG5977-PA, isoform A; A 96.5 0.00063 2.2E-08 59.9 1.1 30 135-164 26-70 (297)
68 3sqw_A ATP-dependent RNA helic 96.5 0.0012 4.1E-08 64.0 3.2 58 132-194 42-106 (579)
69 2ykg_A Probable ATP-dependent 96.4 0.0021 7.3E-08 63.2 4.6 59 131-194 11-72 (696)
70 1njg_A DNA polymerase III subu 96.4 0.00094 3.2E-08 55.3 1.7 30 135-164 28-61 (250)
71 4gl2_A Interferon-induced heli 96.4 0.00073 2.5E-08 66.5 1.1 58 132-194 6-67 (699)
72 3hws_A ATP-dependent CLP prote 96.4 0.001 3.5E-08 60.7 2.0 16 149-164 52-67 (363)
73 2zj8_A DNA helicase, putative 96.4 0.00065 2.2E-08 67.7 0.5 57 132-194 22-79 (720)
74 1l8q_A Chromosomal replication 96.3 0.0013 4.3E-08 58.9 2.2 21 149-173 38-58 (324)
75 2p6r_A Afuhel308 helicase; pro 96.3 0.00045 1.5E-08 68.7 -1.0 56 132-194 24-79 (702)
76 4a2q_A RIG-I, retinoic acid in 96.3 0.0022 7.6E-08 64.7 4.0 59 131-194 246-307 (797)
77 1tue_A Replication protein E1; 96.3 0.00071 2.4E-08 58.3 0.3 20 150-173 60-79 (212)
78 4a4z_A Antiviral helicase SKI2 96.3 0.003 1E-07 65.7 4.9 56 132-194 38-93 (997)
79 2r62_A Cell division protease 96.3 0.00046 1.6E-08 59.9 -1.0 15 150-164 46-60 (268)
80 1in4_A RUVB, holliday junction 96.3 0.0012 4.1E-08 59.8 1.7 29 136-164 31-67 (334)
81 3t15_A Ribulose bisphosphate c 96.3 0.00064 2.2E-08 60.6 -0.2 15 150-164 38-52 (293)
82 3syl_A Protein CBBX; photosynt 96.2 0.00082 2.8E-08 59.3 0.3 15 150-164 69-83 (309)
83 3eie_A Vacuolar protein sortin 96.2 0.0011 3.9E-08 59.6 1.2 30 135-164 23-67 (322)
84 1sxj_C Activator 1 40 kDa subu 96.2 0.0016 5.5E-08 58.8 2.2 30 135-164 30-62 (340)
85 2kjq_A DNAA-related protein; s 96.2 0.001 3.5E-08 53.6 0.8 36 133-173 22-57 (149)
86 2xgj_A ATP-dependent RNA helic 96.2 0.0024 8.2E-08 66.6 3.4 55 133-194 86-140 (1010)
87 1fnn_A CDC6P, cell division co 96.1 0.0013 4.6E-08 59.4 1.2 35 135-173 22-65 (389)
88 3pfi_A Holliday junction ATP-d 96.1 0.0017 5.8E-08 58.2 1.8 30 135-164 34-71 (338)
89 1gm5_A RECG; helicase, replica 96.1 0.0023 7.9E-08 64.9 2.9 55 133-194 368-428 (780)
90 4b4t_M 26S protease regulatory 96.1 0.00088 3E-08 63.6 -0.2 30 135-164 186-231 (434)
91 1sxj_A Activator 1 95 kDa subu 96.1 0.0017 5.9E-08 62.4 1.9 31 134-164 43-93 (516)
92 3cf0_A Transitional endoplasmi 96.1 0.0018 6.2E-08 57.7 1.8 15 150-164 51-65 (301)
93 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.00093 3.2E-08 57.3 -0.1 14 151-164 42-55 (262)
94 3l9o_A ATP-dependent RNA helic 96.1 0.0036 1.2E-07 65.8 4.3 56 132-194 183-238 (1108)
95 1hqc_A RUVB; extended AAA-ATPa 96.0 0.0021 7.1E-08 57.0 2.0 29 136-164 18-54 (324)
96 4fcw_A Chaperone protein CLPB; 96.0 0.0014 4.8E-08 57.7 0.9 15 150-164 49-63 (311)
97 2v1x_A ATP-dependent DNA helic 96.0 0.0046 1.6E-07 60.7 4.5 53 132-194 43-95 (591)
98 3dmq_A RNA polymerase-associat 96.0 0.0031 1E-07 65.4 3.2 58 132-194 152-211 (968)
99 1iqp_A RFCS; clamp loader, ext 96.0 0.0018 6.3E-08 57.0 1.4 30 135-164 30-62 (327)
100 4a2w_A RIG-I, retinoic acid in 96.0 0.0042 1.4E-07 64.1 4.1 59 131-194 246-307 (936)
101 2r2a_A Uncharacterized protein 96.0 0.0015 5.2E-08 55.4 0.6 16 150-165 7-22 (199)
102 2qby_B CDC6 homolog 3, cell di 95.9 0.0018 6.2E-08 58.6 1.1 34 136-173 26-66 (384)
103 2v1u_A Cell division control p 95.9 0.0014 4.7E-08 59.0 0.3 35 135-173 24-65 (387)
104 4b4t_L 26S protease subunit RP 95.9 0.0012 4.1E-08 62.8 -0.2 29 136-164 187-231 (437)
105 3uk6_A RUVB-like 2; hexameric 95.9 0.0024 8.2E-08 57.7 1.7 15 150-164 72-86 (368)
106 4b4t_J 26S protease regulatory 95.9 0.0012 4.2E-08 62.1 -0.2 31 133-164 152-198 (405)
107 1g8p_A Magnesium-chelatase 38 95.9 0.0026 8.9E-08 56.9 1.9 27 138-164 32-61 (350)
108 1um8_A ATP-dependent CLP prote 95.9 0.0028 9.5E-08 58.0 2.0 16 149-164 73-88 (376)
109 2r44_A Uncharacterized protein 95.9 0.0021 7.1E-08 57.6 1.1 29 136-164 33-62 (331)
110 2qby_A CDC6 homolog 1, cell di 95.8 0.0018 6.3E-08 58.1 0.7 29 136-164 26-61 (386)
111 2qgz_A Helicase loader, putati 95.8 0.0035 1.2E-07 56.4 2.5 36 149-191 153-190 (308)
112 1sxj_D Activator 1 41 kDa subu 95.8 0.0016 5.4E-08 58.3 0.0 34 136-173 43-79 (353)
113 1d2n_A N-ethylmaleimide-sensit 95.8 0.0015 5E-08 57.0 -0.2 15 150-164 66-80 (272)
114 2bjv_A PSP operon transcriptio 95.8 0.0024 8.2E-08 55.3 1.2 16 149-164 30-45 (265)
115 1lv7_A FTSH; alpha/beta domain 95.7 0.0017 5.7E-08 56.1 -0.1 14 151-164 48-61 (257)
116 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.0016 5.6E-08 58.8 -0.2 15 150-164 47-61 (322)
117 2orw_A Thymidine kinase; TMTK, 95.7 0.0021 7.1E-08 53.6 0.4 44 148-198 3-46 (184)
118 2l8b_A Protein TRAI, DNA helic 95.7 0.0052 1.8E-07 51.9 2.8 69 136-213 37-109 (189)
119 3d8b_A Fidgetin-like protein 1 95.7 0.003 1E-07 57.8 1.4 30 135-164 89-133 (357)
120 3u61_B DNA polymerase accessor 95.6 0.0031 1.1E-07 56.2 1.4 31 134-164 30-64 (324)
121 3vfd_A Spastin; ATPase, microt 95.6 0.0029 9.9E-08 58.4 1.2 30 135-164 120-164 (389)
122 2chq_A Replication factor C sm 95.6 0.0024 8.1E-08 56.1 0.6 30 135-164 22-54 (319)
123 4b4t_I 26S protease regulatory 95.6 0.0018 6.2E-08 61.5 -0.4 29 136-164 188-232 (437)
124 2z4s_A Chromosomal replication 95.6 0.0061 2.1E-07 57.5 3.2 20 150-173 132-151 (440)
125 2x8a_A Nuclear valosin-contain 95.5 0.0022 7.4E-08 56.8 -0.2 14 151-164 47-60 (274)
126 2zan_A Vacuolar protein sortin 95.5 0.004 1.4E-07 58.8 1.6 30 135-164 139-183 (444)
127 1sxj_B Activator 1 37 kDa subu 95.5 0.0044 1.5E-07 54.4 1.8 30 135-164 26-58 (323)
128 1u0j_A DNA replication protein 95.5 0.0062 2.1E-07 54.2 2.7 38 132-173 82-125 (267)
129 1jr3_A DNA polymerase III subu 95.5 0.0044 1.5E-07 55.8 1.7 30 135-164 21-54 (373)
130 2b8t_A Thymidine kinase; deoxy 95.5 0.0042 1.4E-07 53.7 1.5 41 149-196 13-53 (223)
131 2xau_A PRE-mRNA-splicing facto 95.4 0.0046 1.6E-07 62.6 2.0 55 136-194 96-151 (773)
132 1sxj_E Activator 1 40 kDa subu 95.4 0.0031 1.1E-07 56.7 0.6 30 135-164 19-52 (354)
133 4b4t_H 26S protease regulatory 95.4 0.0018 6.3E-08 61.9 -1.0 29 136-164 215-259 (467)
134 4ddu_A Reverse gyrase; topoiso 95.4 0.006 2.1E-07 64.1 2.8 55 133-194 78-132 (1104)
135 1ixz_A ATP-dependent metallopr 95.4 0.0025 8.5E-08 54.9 -0.2 14 151-164 52-65 (254)
136 2eyq_A TRCF, transcription-rep 95.4 0.0097 3.3E-07 62.8 4.2 55 133-194 603-663 (1151)
137 3nbx_X ATPase RAVA; AAA+ ATPas 95.3 0.0047 1.6E-07 59.6 1.5 27 138-164 30-57 (500)
138 2qp9_X Vacuolar protein sortin 95.3 0.0027 9.4E-08 58.1 -0.2 15 150-164 86-100 (355)
139 3u4q_B ATP-dependent helicase/ 95.3 0.0014 4.8E-08 69.0 -2.5 70 150-224 3-81 (1166)
140 1gku_B Reverse gyrase, TOP-RG; 95.2 0.0087 3E-07 62.6 3.0 53 134-194 58-110 (1054)
141 1oyw_A RECQ helicase, ATP-depe 95.1 0.0067 2.3E-07 58.4 1.7 53 132-194 24-76 (523)
142 3pvs_A Replication-associated 95.0 0.0037 1.3E-07 59.3 -0.2 25 140-164 39-66 (447)
143 1iy2_A ATP-dependent metallopr 95.0 0.0038 1.3E-07 54.6 -0.2 14 151-164 76-89 (278)
144 1z63_A Helicase of the SNF2/RA 95.0 0.019 6.6E-07 54.0 4.6 58 132-194 36-97 (500)
145 2zts_A Putative uncharacterize 95.0 0.0048 1.6E-07 52.1 0.4 41 148-194 30-70 (251)
146 2c9o_A RUVB-like 1; hexameric 94.9 0.0042 1.4E-07 58.7 -0.1 15 150-164 65-79 (456)
147 3pxg_A Negative regulator of g 94.9 0.0091 3.1E-07 56.7 2.2 29 136-164 186-217 (468)
148 1a5t_A Delta prime, HOLB; zinc 94.9 0.0074 2.5E-07 54.5 1.4 29 136-164 5-40 (334)
149 3hu3_A Transitional endoplasmi 94.8 0.0051 1.7E-07 59.1 0.1 30 135-164 209-254 (489)
150 2dr3_A UPF0273 protein PH0284; 94.8 0.0063 2.2E-07 51.3 0.6 37 148-191 23-59 (247)
151 1ojl_A Transcriptional regulat 94.8 0.0093 3.2E-07 53.4 1.8 16 149-164 26-41 (304)
152 3k1j_A LON protease, ATP-depen 94.7 0.014 4.7E-07 57.2 2.9 29 136-164 47-76 (604)
153 2r8r_A Sensor protein; KDPD, P 94.7 0.0071 2.4E-07 52.6 0.8 30 151-187 9-38 (228)
154 3lw7_A Adenylate kinase relate 94.5 0.0086 2.9E-07 47.3 0.8 16 149-164 2-17 (179)
155 3dm5_A SRP54, signal recogniti 94.5 0.01 3.4E-07 56.5 1.4 38 150-194 102-140 (443)
156 2fna_A Conserved hypothetical 94.5 0.0084 2.9E-07 53.1 0.7 28 136-164 19-46 (357)
157 2wv9_A Flavivirin protease NS2 94.4 0.0044 1.5E-07 61.8 -1.4 55 134-194 216-281 (673)
158 4f92_B U5 small nuclear ribonu 94.4 0.029 9.8E-07 61.6 4.8 60 130-194 923-983 (1724)
159 2w0m_A SSO2452; RECA, SSPF, un 94.4 0.0089 3E-07 49.7 0.5 35 149-190 24-58 (235)
160 3kb2_A SPBC2 prophage-derived 94.3 0.0079 2.7E-07 47.9 0.2 15 150-164 3-17 (173)
161 3kl4_A SRP54, signal recogniti 94.3 0.0088 3E-07 56.7 0.5 38 150-194 99-137 (433)
162 2w00_A HSDR, R.ECOR124I; ATP-b 94.3 0.017 5.9E-07 60.3 2.7 56 133-194 271-341 (1038)
163 1qhx_A CPT, protein (chloramph 94.3 0.0084 2.9E-07 48.3 0.3 16 149-164 4-19 (178)
164 2v6i_A RNA helicase; membrane, 94.3 0.013 4.5E-07 54.8 1.5 40 149-194 3-42 (431)
165 1w5s_A Origin recognition comp 94.2 0.0062 2.1E-07 55.4 -0.7 29 136-164 28-68 (412)
166 1p9r_A General secretion pathw 94.2 0.02 6.8E-07 53.9 2.7 37 133-173 150-188 (418)
167 2px0_A Flagellar biosynthesis 94.2 0.01 3.5E-07 53.2 0.6 36 149-190 106-141 (296)
168 1xx6_A Thymidine kinase; NESG, 94.2 0.01 3.5E-07 50.0 0.5 45 149-200 9-53 (191)
169 2ce7_A Cell division protein F 94.2 0.0083 2.8E-07 57.5 -0.1 14 151-164 52-65 (476)
170 3crv_A XPD/RAD3 related DNA he 94.1 0.026 8.8E-07 54.5 3.3 51 134-194 4-58 (551)
171 3pxi_A Negative regulator of g 94.0 0.019 6.7E-07 57.5 2.3 29 136-164 186-217 (758)
172 2jlq_A Serine protease subunit 94.0 0.013 4.4E-07 55.2 0.9 48 141-194 11-59 (451)
173 1ly1_A Polynucleotide kinase; 94.0 0.012 4.1E-07 47.1 0.6 15 150-164 4-18 (181)
174 1g41_A Heat shock protein HSLU 94.0 0.019 6.5E-07 54.6 2.0 15 150-164 52-66 (444)
175 2qen_A Walker-type ATPase; unk 94.0 0.021 7.3E-07 50.4 2.2 30 136-165 18-48 (350)
176 1yks_A Genome polyprotein [con 93.9 0.011 3.6E-07 55.7 0.0 42 147-194 7-48 (440)
177 3f9v_A Minichromosome maintena 93.9 0.0096 3.3E-07 58.5 -0.3 15 150-164 329-343 (595)
178 1zp6_A Hypothetical protein AT 93.8 0.0092 3.1E-07 48.6 -0.4 16 149-164 10-25 (191)
179 2gno_A DNA polymerase III, gam 93.8 0.01 3.5E-07 53.4 -0.2 26 139-164 6-34 (305)
180 1vma_A Cell division protein F 93.8 0.014 4.7E-07 52.7 0.6 34 150-190 106-139 (306)
181 3cf2_A TER ATPase, transitiona 93.8 0.01 3.5E-07 60.5 -0.3 14 151-164 241-254 (806)
182 4a15_A XPD helicase, ATP-depen 93.7 0.025 8.7E-07 55.7 2.4 54 135-194 5-62 (620)
183 2z83_A Helicase/nucleoside tri 93.7 0.0088 3E-07 56.5 -0.9 42 147-194 20-61 (459)
184 1kag_A SKI, shikimate kinase I 93.6 0.019 6.5E-07 45.9 1.2 16 149-164 5-20 (173)
185 2dhr_A FTSH; AAA+ protein, hex 93.6 0.012 4E-07 56.8 -0.2 14 151-164 67-80 (499)
186 3iij_A Coilin-interacting nucl 93.5 0.019 6.6E-07 46.4 1.0 16 149-164 12-27 (180)
187 2vl7_A XPD; helicase, unknown 93.5 0.029 9.9E-07 54.1 2.4 52 133-194 7-62 (540)
188 3trf_A Shikimate kinase, SK; a 93.5 0.014 5E-07 47.2 0.2 17 149-165 6-22 (185)
189 2whx_A Serine protease/ntpase/ 93.5 0.0052 1.8E-07 60.7 -3.0 48 141-194 179-226 (618)
190 1kht_A Adenylate kinase; phosp 93.4 0.018 6E-07 46.6 0.6 16 149-164 4-19 (192)
191 1nks_A Adenylate kinase; therm 93.4 0.017 6E-07 46.6 0.5 15 150-164 3-17 (194)
192 3b85_A Phosphate starvation-in 93.4 0.045 1.5E-06 46.4 3.1 32 133-164 7-38 (208)
193 3m6a_A ATP-dependent protease 93.4 0.013 4.4E-07 56.9 -0.3 16 149-164 109-124 (543)
194 2iyv_A Shikimate kinase, SK; t 93.3 0.019 6.4E-07 46.6 0.6 16 149-164 3-18 (184)
195 2z0h_A DTMP kinase, thymidylat 93.3 0.023 7.7E-07 46.3 1.1 15 150-164 2-16 (197)
196 1cr0_A DNA primase/helicase; R 93.3 0.021 7E-07 50.3 0.8 37 148-190 35-71 (296)
197 1y63_A LMAJ004144AAA protein; 93.2 0.017 5.7E-07 47.4 0.2 16 149-164 11-26 (184)
198 1r6b_X CLPA protein; AAA+, N-t 93.2 0.028 9.7E-07 56.1 1.9 29 136-164 192-223 (758)
199 1gvn_B Zeta; postsegregational 93.2 0.016 5.5E-07 51.5 -0.0 15 150-164 35-49 (287)
200 1via_A Shikimate kinase; struc 93.1 0.022 7.4E-07 46.0 0.7 15 150-164 6-20 (175)
201 2v3c_C SRP54, signal recogniti 93.1 0.035 1.2E-06 52.5 2.2 36 150-192 101-137 (432)
202 3pxi_A Negative regulator of g 93.1 0.023 7.9E-07 57.0 0.9 14 151-164 524-537 (758)
203 3dl0_A Adenylate kinase; phosp 93.0 0.021 7.3E-07 47.6 0.6 14 151-164 3-16 (216)
204 2bdt_A BH3686; alpha-beta prot 93.0 0.015 5.3E-07 47.4 -0.4 15 150-164 4-18 (189)
205 1zu4_A FTSY; GTPase, signal re 92.9 0.023 7.7E-07 51.6 0.5 33 150-189 107-139 (320)
206 3vaa_A Shikimate kinase, SK; s 92.9 0.018 6.1E-07 47.7 -0.2 16 149-164 26-41 (199)
207 1n0w_A DNA repair protein RAD5 92.8 0.017 5.9E-07 48.6 -0.3 17 148-164 24-40 (243)
208 2rhm_A Putative kinase; P-loop 92.8 0.023 7.9E-07 46.1 0.4 15 150-164 7-21 (193)
209 2vhj_A Ntpase P4, P4; non- hyd 92.8 0.024 8.2E-07 51.9 0.5 16 149-164 124-139 (331)
210 3fb4_A Adenylate kinase; psych 92.8 0.025 8.5E-07 47.1 0.6 14 151-164 3-16 (216)
211 2zr9_A Protein RECA, recombina 92.8 0.026 8.8E-07 51.8 0.7 16 149-164 62-77 (349)
212 3tau_A Guanylate kinase, GMP k 92.7 0.018 6.3E-07 48.2 -0.2 16 149-164 9-24 (208)
213 2oap_1 GSPE-2, type II secreti 92.7 0.078 2.7E-06 51.1 4.1 36 134-173 245-281 (511)
214 2cvh_A DNA repair and recombin 92.7 0.018 6.2E-07 47.7 -0.4 16 149-164 21-36 (220)
215 3p32_A Probable GTPase RV1496/ 92.6 0.039 1.4E-06 50.3 1.8 34 150-190 81-114 (355)
216 2vli_A Antibiotic resistance p 92.6 0.03 1E-06 45.1 0.9 16 149-164 6-21 (183)
217 4eun_A Thermoresistant glucoki 92.6 0.021 7E-07 47.4 -0.2 17 148-164 29-45 (200)
218 1e6c_A Shikimate kinase; phosp 92.5 0.034 1.2E-06 44.3 1.1 16 149-164 3-18 (173)
219 2plr_A DTMP kinase, probable t 92.5 0.028 9.5E-07 46.2 0.6 15 150-164 6-20 (213)
220 3hr8_A Protein RECA; alpha and 92.5 0.03 1E-06 51.6 0.9 16 149-164 62-77 (356)
221 3bh0_A DNAB-like replicative h 92.5 0.028 9.7E-07 50.4 0.6 38 148-192 68-105 (315)
222 3cf2_A TER ATPase, transitiona 92.5 0.02 6.8E-07 58.3 -0.4 30 136-165 483-528 (806)
223 1qvr_A CLPB protein; coiled co 92.5 0.042 1.4E-06 56.0 1.9 29 136-164 176-207 (854)
224 1u94_A RECA protein, recombina 92.4 0.031 1E-06 51.5 0.8 17 148-164 63-79 (356)
225 1tev_A UMP-CMP kinase; ploop, 92.4 0.029 9.9E-07 45.3 0.6 15 150-164 5-19 (196)
226 3cm0_A Adenylate kinase; ATP-b 92.4 0.03 1E-06 45.3 0.6 15 150-164 6-20 (186)
227 1zuh_A Shikimate kinase; alpha 92.4 0.026 8.8E-07 45.1 0.2 15 150-164 9-23 (168)
228 1knq_A Gluconate kinase; ALFA/ 92.3 0.026 8.8E-07 45.4 0.1 16 149-164 9-24 (175)
229 3t61_A Gluconokinase; PSI-biol 92.3 0.037 1.3E-06 45.7 1.0 16 149-164 19-34 (202)
230 1r6b_X CLPA protein; AAA+, N-t 92.3 0.028 9.5E-07 56.2 0.3 14 151-164 491-504 (758)
231 1xjc_A MOBB protein homolog; s 92.2 0.036 1.2E-06 45.8 0.9 37 149-192 5-43 (169)
232 2cdn_A Adenylate kinase; phosp 92.2 0.032 1.1E-06 46.0 0.6 15 150-164 22-36 (201)
233 2qor_A Guanylate kinase; phosp 92.2 0.027 9.4E-07 46.8 0.1 16 149-164 13-28 (204)
234 2ehv_A Hypothetical protein PH 92.2 0.024 8.1E-07 47.9 -0.3 17 148-164 30-46 (251)
235 2bwj_A Adenylate kinase 5; pho 92.1 0.044 1.5E-06 44.6 1.3 17 148-164 12-28 (199)
236 2c95_A Adenylate kinase 1; tra 92.1 0.034 1.2E-06 45.1 0.6 16 149-164 10-25 (196)
237 1ye8_A Protein THEP1, hypothet 92.1 0.025 8.7E-07 46.6 -0.2 14 151-164 3-16 (178)
238 1j8m_F SRP54, signal recogniti 92.1 0.039 1.3E-06 49.4 1.0 37 150-193 100-137 (297)
239 1jjv_A Dephospho-COA kinase; P 92.1 0.029 9.8E-07 46.4 0.1 15 150-164 4-18 (206)
240 3umf_A Adenylate kinase; rossm 92.0 0.032 1.1E-06 47.8 0.3 16 149-164 30-45 (217)
241 3cpe_A Terminase, DNA packagin 92.0 0.08 2.7E-06 51.7 3.2 57 133-194 163-219 (592)
242 3tr0_A Guanylate kinase, GMP k 92.0 0.026 9.1E-07 46.3 -0.2 16 149-164 8-23 (205)
243 1qf9_A UMP/CMP kinase, protein 91.9 0.034 1.2E-06 44.8 0.4 15 150-164 8-22 (194)
244 2pbr_A DTMP kinase, thymidylat 91.9 0.036 1.2E-06 44.8 0.6 15 150-164 2-16 (195)
245 2j41_A Guanylate kinase; GMP, 91.9 0.027 9.1E-07 46.2 -0.3 16 149-164 7-22 (207)
246 2xxa_A Signal recognition part 91.9 0.037 1.2E-06 52.3 0.6 38 150-193 102-140 (433)
247 2r6a_A DNAB helicase, replicat 91.9 0.04 1.4E-06 51.9 0.9 40 148-193 203-242 (454)
248 3mwy_W Chromo domain-containin 91.8 0.14 4.9E-06 51.6 4.9 58 132-194 235-297 (800)
249 2ze6_A Isopentenyl transferase 91.8 0.038 1.3E-06 48.0 0.6 15 150-164 3-17 (253)
250 3sr0_A Adenylate kinase; phosp 91.8 0.038 1.3E-06 46.8 0.6 14 151-164 3-16 (206)
251 1xp8_A RECA protein, recombina 91.8 0.037 1.3E-06 51.1 0.5 38 149-193 75-112 (366)
252 1yrb_A ATP(GTP)binding protein 91.8 0.04 1.4E-06 47.0 0.7 34 149-190 15-48 (262)
253 2wwf_A Thymidilate kinase, put 91.6 0.041 1.4E-06 45.3 0.6 16 149-164 11-26 (212)
254 2yvu_A Probable adenylyl-sulfa 91.5 0.046 1.6E-06 44.5 0.8 16 149-164 14-29 (186)
255 2j9r_A Thymidine kinase; TK1, 91.5 0.048 1.6E-06 46.9 0.8 45 149-200 29-73 (214)
256 1q57_A DNA primase/helicase; d 91.4 0.029 1E-06 53.5 -0.6 41 148-194 242-282 (503)
257 1nn5_A Similar to deoxythymidy 91.4 0.042 1.4E-06 45.3 0.4 16 149-164 10-25 (215)
258 2p5t_B PEZT; postsegregational 91.4 0.031 1.1E-06 48.3 -0.4 15 150-164 34-48 (253)
259 2jaq_A Deoxyguanosine kinase; 91.4 0.046 1.6E-06 44.5 0.6 15 150-164 2-16 (205)
260 2q6t_A DNAB replication FORK h 91.4 0.05 1.7E-06 51.1 0.9 40 148-193 200-239 (444)
261 1qvr_A CLPB protein; coiled co 91.4 0.041 1.4E-06 56.0 0.4 15 150-164 590-604 (854)
262 3tlx_A Adenylate kinase 2; str 91.4 0.046 1.6E-06 47.0 0.6 15 150-164 31-45 (243)
263 1aky_A Adenylate kinase; ATP:A 91.4 0.046 1.6E-06 45.8 0.6 15 150-164 6-20 (220)
264 1zak_A Adenylate kinase; ATP:A 91.3 0.053 1.8E-06 45.4 1.0 16 149-164 6-21 (222)
265 2bbw_A Adenylate kinase 4, AK4 91.3 0.034 1.2E-06 47.6 -0.3 16 149-164 28-43 (246)
266 1ukz_A Uridylate kinase; trans 91.2 0.047 1.6E-06 44.9 0.5 15 150-164 17-31 (203)
267 1zd8_A GTP:AMP phosphotransfer 91.2 0.049 1.7E-06 45.9 0.6 16 149-164 8-23 (227)
268 4a74_A DNA repair and recombin 91.2 0.031 1.1E-06 46.5 -0.6 16 149-164 26-41 (231)
269 2pt5_A Shikimate kinase, SK; a 91.2 0.051 1.7E-06 43.1 0.7 14 151-164 3-16 (168)
270 2j37_W Signal recognition part 91.2 0.044 1.5E-06 52.8 0.4 35 150-191 103-137 (504)
271 1e4v_A Adenylate kinase; trans 91.2 0.047 1.6E-06 45.6 0.5 14 151-164 3-16 (214)
272 2xb4_A Adenylate kinase; ATP-b 91.1 0.05 1.7E-06 46.0 0.6 14 151-164 3-16 (223)
273 1svm_A Large T antigen; AAA+ f 91.1 0.038 1.3E-06 51.4 -0.2 16 149-164 170-185 (377)
274 1nlf_A Regulatory protein REPA 91.1 0.034 1.2E-06 48.5 -0.5 17 148-164 30-46 (279)
275 1kgd_A CASK, peripheral plasma 91.1 0.037 1.3E-06 45.2 -0.3 17 148-164 5-21 (180)
276 2v54_A DTMP kinase, thymidylat 91.0 0.054 1.8E-06 44.3 0.7 16 149-164 5-20 (204)
277 3bgw_A DNAB-like replicative h 91.0 0.054 1.8E-06 51.2 0.7 39 148-193 197-235 (444)
278 3jvv_A Twitching mobility prot 90.9 0.053 1.8E-06 49.9 0.6 29 141-173 114-144 (356)
279 1ak2_A Adenylate kinase isoenz 90.8 0.055 1.9E-06 45.9 0.6 15 150-164 18-32 (233)
280 1ypw_A Transitional endoplasmi 90.8 0.036 1.2E-06 56.3 -0.7 15 150-164 240-254 (806)
281 2z43_A DNA repair and recombin 90.8 0.055 1.9E-06 48.6 0.6 17 148-164 107-123 (324)
282 3lnc_A Guanylate kinase, GMP k 90.7 0.05 1.7E-06 46.0 0.2 16 149-164 28-43 (231)
283 3a00_A Guanylate kinase, GMP k 90.7 0.048 1.7E-06 44.6 0.1 16 149-164 2-17 (186)
284 3a4m_A L-seryl-tRNA(SEC) kinas 90.6 0.058 2E-06 46.8 0.6 15 150-164 6-20 (260)
285 3b9q_A Chloroplast SRP recepto 90.6 0.063 2.2E-06 48.1 0.8 34 150-190 102-135 (302)
286 1rj9_A FTSY, signal recognitio 90.6 0.066 2.3E-06 48.1 0.9 35 149-190 103-137 (304)
287 3be4_A Adenylate kinase; malar 90.6 0.059 2E-06 45.2 0.5 15 150-164 7-21 (217)
288 3e70_C DPA, signal recognition 90.5 0.058 2E-06 49.0 0.5 38 149-193 130-168 (328)
289 4f92_B U5 small nuclear ribonu 90.4 0.18 6.2E-06 55.3 4.2 60 130-194 76-145 (1724)
290 3uie_A Adenylyl-sulfate kinase 90.2 0.046 1.6E-06 45.2 -0.4 16 149-164 26-41 (200)
291 3ug7_A Arsenical pump-driving 90.1 0.071 2.4E-06 48.6 0.7 35 149-190 27-61 (349)
292 1f2t_A RAD50 ABC-ATPase; DNA d 90.1 0.045 1.5E-06 43.7 -0.6 22 148-173 23-44 (149)
293 1np6_A Molybdopterin-guanine d 90.0 0.082 2.8E-06 43.6 1.0 21 149-173 7-27 (174)
294 3rc3_A ATP-dependent RNA helic 90.0 0.044 1.5E-06 54.7 -0.9 41 143-194 150-190 (677)
295 4gp7_A Metallophosphoesterase; 89.9 0.075 2.6E-06 43.0 0.6 16 149-164 10-25 (171)
296 4a1f_A DNAB helicase, replicat 89.9 0.072 2.5E-06 48.8 0.6 39 148-193 46-84 (338)
297 2if2_A Dephospho-COA kinase; a 89.9 0.073 2.5E-06 43.7 0.5 15 150-164 3-17 (204)
298 3io5_A Recombination and repai 89.8 0.07 2.4E-06 48.8 0.4 17 149-165 29-45 (333)
299 1cke_A CK, MSSA, protein (cyti 89.7 0.077 2.6E-06 44.2 0.6 16 149-164 6-21 (227)
300 4ag6_A VIRB4 ATPase, type IV s 89.6 0.11 3.8E-06 47.6 1.6 41 147-194 34-74 (392)
301 2pez_A Bifunctional 3'-phospho 89.5 0.069 2.3E-06 43.1 0.1 15 150-164 7-21 (179)
302 2og2_A Putative signal recogni 89.5 0.088 3E-06 48.5 0.8 34 150-190 159-192 (359)
303 1ltq_A Polynucleotide kinase; 89.5 0.082 2.8E-06 46.3 0.6 16 150-165 4-19 (301)
304 3kta_A Chromosome segregation 89.5 0.062 2.1E-06 43.4 -0.2 22 148-173 26-47 (182)
305 3ake_A Cytidylate kinase; CMP 89.4 0.075 2.6E-06 43.5 0.3 15 150-164 4-18 (208)
306 2ewv_A Twitching motility prot 89.4 0.08 2.7E-06 48.8 0.5 22 148-173 136-157 (372)
307 1ypw_A Transitional endoplasmi 89.4 0.037 1.2E-06 56.2 -2.0 16 150-165 513-528 (806)
308 3nwj_A ATSK2; P loop, shikimat 89.3 0.1 3.5E-06 45.5 1.1 17 148-164 48-64 (250)
309 1g5t_A COB(I)alamin adenosyltr 89.2 0.11 3.8E-06 44.0 1.2 35 148-189 28-62 (196)
310 1rz3_A Hypothetical protein rb 89.2 0.12 4E-06 42.9 1.3 15 150-164 24-38 (201)
311 4edh_A DTMP kinase, thymidylat 89.2 0.1 3.4E-06 44.4 0.9 40 148-194 6-46 (213)
312 3cmu_A Protein RECA, recombina 89.2 0.11 3.8E-06 57.6 1.5 46 142-194 1415-1466(2050)
313 2i1q_A DNA repair and recombin 89.1 0.085 2.9E-06 47.0 0.4 17 149-165 99-115 (322)
314 3qks_A DNA double-strand break 89.1 0.056 1.9E-06 45.3 -0.7 22 148-173 23-44 (203)
315 2o0j_A Terminase, DNA packagin 89.1 0.21 7.3E-06 46.4 3.1 57 133-194 163-219 (385)
316 1ex7_A Guanylate kinase; subst 89.0 0.082 2.8E-06 44.2 0.2 16 149-164 2-17 (186)
317 2qt1_A Nicotinamide riboside k 88.9 0.092 3.1E-06 43.4 0.4 15 150-164 23-37 (207)
318 3zq6_A Putative arsenical pump 88.9 0.097 3.3E-06 47.0 0.6 36 149-191 15-50 (324)
319 4eaq_A DTMP kinase, thymidylat 88.8 0.13 4.3E-06 44.0 1.3 16 149-164 27-42 (229)
320 3c8u_A Fructokinase; YP_612366 88.7 0.081 2.8E-06 44.0 -0.0 16 149-164 23-38 (208)
321 1ihu_A Arsenical pump-driving 88.7 0.11 3.8E-06 50.4 0.9 33 149-188 9-41 (589)
322 3lv8_A DTMP kinase, thymidylat 88.6 0.14 4.6E-06 44.4 1.3 40 148-194 27-68 (236)
323 1lvg_A Guanylate kinase, GMP k 88.5 0.089 3E-06 43.7 0.1 16 149-164 5-20 (198)
324 1m7g_A Adenylylsulfate kinase; 88.5 0.11 3.6E-06 43.4 0.5 16 149-164 26-41 (211)
325 1uj2_A Uridine-cytidine kinase 88.4 0.091 3.1E-06 45.1 0.1 15 150-164 24-38 (252)
326 2i3b_A HCR-ntpase, human cance 88.3 0.094 3.2E-06 43.7 0.1 16 149-164 2-17 (189)
327 1uf9_A TT1252 protein; P-loop, 88.3 0.092 3.1E-06 42.8 0.1 15 150-164 10-24 (203)
328 2yhs_A FTSY, cell division pro 88.3 0.12 4E-06 49.9 0.8 37 150-193 295-332 (503)
329 1v5w_A DMC1, meiotic recombina 88.3 0.11 3.9E-06 47.0 0.7 16 149-164 123-138 (343)
330 2eyu_A Twitching motility prot 88.3 0.11 3.8E-06 45.4 0.6 22 148-173 25-46 (261)
331 1ls1_A Signal recognition part 88.3 0.11 3.9E-06 46.2 0.6 34 149-189 99-132 (295)
332 2wsm_A Hydrogenase expression/ 88.2 0.095 3.3E-06 43.4 0.1 33 137-173 16-51 (221)
333 1pzn_A RAD51, DNA repair and r 88.1 0.11 3.7E-06 47.4 0.4 16 149-164 132-147 (349)
334 1z6t_A APAF-1, apoptotic prote 88.1 0.19 6.6E-06 48.1 2.2 29 136-164 130-163 (591)
335 2qmh_A HPR kinase/phosphorylas 87.9 0.1 3.4E-06 44.6 0.1 17 149-165 35-51 (205)
336 1z3i_X Similar to RAD54-like; 87.7 0.2 6.7E-06 49.4 2.0 57 133-194 55-125 (644)
337 2qm8_A GTPase/ATPase; G protei 87.5 0.13 4.4E-06 46.7 0.5 35 149-190 56-90 (337)
338 2f6r_A COA synthase, bifunctio 87.3 0.12 4E-06 45.6 0.1 15 150-164 77-91 (281)
339 2ffh_A Protein (FFH); SRP54, s 87.2 0.14 4.8E-06 48.3 0.6 37 150-193 100-137 (425)
340 2www_A Methylmalonic aciduria 86.9 0.15 5.1E-06 46.5 0.6 21 149-173 75-95 (349)
341 3ney_A 55 kDa erythrocyte memb 86.9 0.11 3.7E-06 43.9 -0.3 17 148-164 19-35 (197)
342 2pt7_A CAG-ALFA; ATPase, prote 86.9 0.4 1.4E-05 43.3 3.4 31 139-173 161-192 (330)
343 2grj_A Dephospho-COA kinase; T 86.9 0.13 4.4E-06 43.0 0.1 15 150-164 14-28 (192)
344 1vht_A Dephospho-COA kinase; s 86.9 0.16 5.3E-06 42.3 0.6 15 150-164 6-20 (218)
345 3v9p_A DTMP kinase, thymidylat 86.8 0.2 6.7E-06 43.1 1.2 40 149-194 26-69 (227)
346 1e9r_A Conjugal transfer prote 86.7 0.16 5.4E-06 47.1 0.7 40 148-194 53-92 (437)
347 3iqw_A Tail-anchored protein t 86.7 0.18 6.1E-06 45.8 1.0 37 149-192 17-53 (334)
348 3lda_A DNA repair protein RAD5 86.5 0.16 5.5E-06 47.4 0.5 18 148-165 178-195 (400)
349 1tf7_A KAIC; homohexamer, hexa 86.4 0.2 6.7E-06 48.1 1.1 39 149-194 282-320 (525)
350 4akg_A Glutathione S-transfera 86.3 0.17 5.8E-06 57.7 0.7 26 140-165 1258-1284(2695)
351 3asz_A Uridine kinase; cytidin 86.2 0.12 4E-06 42.7 -0.5 15 150-164 8-22 (211)
352 1gtv_A TMK, thymidylate kinase 86.1 0.074 2.5E-06 43.8 -1.8 15 150-164 2-16 (214)
353 3zvl_A Bifunctional polynucleo 86.1 0.14 4.6E-06 47.8 -0.2 17 149-165 259-275 (416)
354 2p67_A LAO/AO transport system 86.0 0.18 6E-06 45.7 0.5 21 149-173 57-77 (341)
355 1z6g_A Guanylate kinase; struc 86.0 0.15 5.1E-06 43.0 0.0 17 148-164 23-39 (218)
356 2hf9_A Probable hydrogenase ni 85.9 0.15 5E-06 42.3 -0.0 30 135-164 22-54 (226)
357 3r20_A Cytidylate kinase; stru 85.9 0.16 5.3E-06 44.0 0.1 15 150-164 11-25 (233)
358 1nij_A Hypothetical protein YJ 85.8 0.21 7E-06 44.8 0.9 16 149-164 5-20 (318)
359 2woo_A ATPase GET3; tail-ancho 85.7 0.21 7.2E-06 45.0 0.9 35 148-189 19-53 (329)
360 2rcn_A Probable GTPase ENGC; Y 85.7 0.23 7.9E-06 45.8 1.2 25 140-164 207-231 (358)
361 3e2i_A Thymidine kinase; Zn-bi 85.7 0.2 6.7E-06 43.2 0.6 45 149-200 29-73 (219)
362 3bfv_A CAPA1, CAPB2, membrane 85.6 0.21 7.2E-06 43.7 0.9 34 149-189 83-117 (271)
363 2gza_A Type IV secretion syste 85.6 0.27 9.1E-06 45.0 1.5 28 142-173 168-196 (361)
364 2h92_A Cytidylate kinase; ross 85.4 0.19 6.7E-06 41.6 0.5 15 150-164 5-19 (219)
365 3gmt_A Adenylate kinase; ssgci 85.1 0.2 6.9E-06 43.4 0.4 13 152-164 12-24 (230)
366 1w4r_A Thymidine kinase; type 85.0 0.21 7.1E-06 42.3 0.5 44 149-199 21-64 (195)
367 3o8b_A HCV NS3 protease/helica 85.0 0.053 1.8E-06 54.1 -3.7 38 147-194 231-268 (666)
368 3l0o_A Transcription terminati 85.0 0.2 6.8E-06 47.2 0.4 16 150-165 177-192 (427)
369 2woj_A ATPase GET3; tail-ancho 84.9 0.23 7.9E-06 45.3 0.8 36 149-190 19-55 (354)
370 1znw_A Guanylate kinase, GMP k 84.9 0.16 5.4E-06 42.2 -0.3 17 148-164 20-36 (207)
371 1s96_A Guanylate kinase, GMP k 84.8 0.16 5.6E-06 43.2 -0.2 16 149-164 17-32 (219)
372 1c4o_A DNA nucleotide excision 84.8 0.47 1.6E-05 47.0 3.0 52 133-194 8-64 (664)
373 3io3_A DEHA2D07832P; chaperone 84.7 0.24 8.4E-06 45.2 0.8 37 149-191 19-56 (348)
374 3crm_A TRNA delta(2)-isopenten 84.7 0.23 7.8E-06 45.2 0.6 16 150-165 7-22 (323)
375 1u0l_A Probable GTPase ENGC; p 84.6 0.26 8.8E-06 43.8 0.9 26 139-164 160-185 (301)
376 1byi_A Dethiobiotin synthase; 84.5 0.27 9.4E-06 40.7 1.0 35 150-191 4-38 (224)
377 3cio_A ETK, tyrosine-protein k 84.4 0.25 8.5E-06 43.9 0.8 34 149-189 105-139 (299)
378 3tqc_A Pantothenate kinase; bi 84.1 0.31 1.1E-05 44.1 1.3 15 150-164 94-108 (321)
379 2yv5_A YJEQ protein; hydrolase 84.1 0.25 8.7E-06 43.9 0.6 26 139-164 156-181 (302)
380 1tq4_A IIGP1, interferon-induc 83.7 0.27 9.2E-06 46.1 0.7 30 135-164 55-85 (413)
381 2v9p_A Replication protein E1; 83.6 0.19 6.3E-06 45.3 -0.5 16 149-164 127-142 (305)
382 2oze_A ORF delta'; para, walke 83.5 0.63 2.1E-05 40.5 3.0 50 137-193 21-77 (298)
383 1q3t_A Cytidylate kinase; nucl 83.4 0.24 8.3E-06 41.9 0.2 15 150-164 18-32 (236)
384 3kjh_A CO dehydrogenase/acetyl 83.3 0.17 5.7E-06 42.4 -0.9 32 150-189 3-34 (254)
385 3qkt_A DNA double-strand break 83.1 0.19 6.5E-06 45.3 -0.6 22 148-173 23-44 (339)
386 2ga8_A Hypothetical 39.9 kDa p 83.0 0.22 7.6E-06 46.0 -0.2 14 151-164 27-40 (359)
387 1a7j_A Phosphoribulokinase; tr 82.8 0.31 1.1E-05 43.1 0.7 16 149-164 6-21 (290)
388 3ice_A Transcription terminati 82.8 0.29 1E-05 46.0 0.5 30 136-165 159-191 (422)
389 2jeo_A Uridine-cytidine kinase 82.7 0.21 7.3E-06 42.6 -0.4 15 150-164 27-41 (245)
390 1p5z_B DCK, deoxycytidine kina 82.6 0.27 9.1E-06 42.4 0.1 16 149-164 25-40 (263)
391 4e22_A Cytidylate kinase; P-lo 82.5 0.28 9.6E-06 42.2 0.3 16 149-164 28-43 (252)
392 4tmk_A Protein (thymidylate ki 82.5 0.43 1.5E-05 40.4 1.4 39 149-194 4-44 (213)
393 1c9k_A COBU, adenosylcobinamid 82.3 0.36 1.2E-05 40.2 0.9 15 150-164 1-15 (180)
394 1hyq_A MIND, cell division inh 82.1 0.35 1.2E-05 41.2 0.8 34 150-190 5-38 (263)
395 4akg_A Glutathione S-transfera 82.0 0.6 2.1E-05 53.3 2.7 31 134-164 630-661 (2695)
396 1nrj_B SR-beta, signal recogni 81.2 0.26 8.8E-06 40.5 -0.4 15 150-164 14-28 (218)
397 1tf5_A Preprotein translocase 81.2 0.94 3.2E-05 46.2 3.6 53 133-194 83-135 (844)
398 3cmw_A Protein RECA, recombina 81.1 0.4 1.4E-05 52.5 0.9 17 149-165 733-749 (1706)
399 1pui_A ENGB, probable GTP-bind 81.1 0.34 1.2E-05 39.4 0.3 15 150-164 28-42 (210)
400 3ea0_A ATPase, para family; al 81.0 0.42 1.4E-05 40.0 0.8 34 150-189 7-40 (245)
401 1sq5_A Pantothenate kinase; P- 80.9 0.27 9.2E-06 43.7 -0.5 15 150-164 82-96 (308)
402 2ph1_A Nucleotide-binding prot 80.7 0.34 1.2E-05 41.6 0.2 38 149-193 20-59 (262)
403 3end_A Light-independent proto 80.7 0.38 1.3E-05 42.2 0.5 32 150-189 44-75 (307)
404 1cp2_A CP2, nitrogenase iron p 80.7 0.38 1.3E-05 41.1 0.5 35 151-193 5-41 (269)
405 3qf7_A RAD50; ABC-ATPase, ATPa 80.6 0.29 9.9E-06 44.8 -0.4 22 148-173 23-44 (365)
406 2orv_A Thymidine kinase; TP4A 80.6 0.41 1.4E-05 41.6 0.6 43 149-198 20-62 (234)
407 2dyk_A GTP-binding protein; GT 80.3 0.29 1E-05 37.6 -0.4 14 151-164 4-17 (161)
408 3cmw_A Protein RECA, recombina 80.1 0.44 1.5E-05 52.2 0.8 18 148-165 383-400 (1706)
409 1tf7_A KAIC; homohexamer, hexa 79.9 0.42 1.4E-05 45.7 0.5 16 149-164 40-55 (525)
410 1g3q_A MIND ATPase, cell divis 79.8 0.38 1.3E-05 40.2 0.1 33 150-189 5-37 (237)
411 3a8t_A Adenylate isopentenyltr 79.8 0.27 9.2E-06 45.0 -0.9 17 149-165 41-57 (339)
412 3aez_A Pantothenate kinase; tr 79.5 0.33 1.1E-05 43.6 -0.3 16 149-164 91-106 (312)
413 1nkt_A Preprotein translocase 79.5 0.93 3.2E-05 46.6 2.9 53 133-194 111-163 (922)
414 1sky_E F1-ATPase, F1-ATP synth 79.3 0.5 1.7E-05 45.2 0.8 17 149-165 152-168 (473)
415 2f9l_A RAB11B, member RAS onco 79.2 0.35 1.2E-05 39.3 -0.2 14 151-164 8-21 (199)
416 1htw_A HI0065; nucleotide-bind 79.2 0.32 1.1E-05 39.2 -0.5 16 149-164 34-49 (158)
417 3tqf_A HPR(Ser) kinase; transf 79.2 0.31 1.1E-05 40.7 -0.6 15 151-165 19-33 (181)
418 1sgw_A Putative ABC transporte 79.1 0.42 1.4E-05 40.5 0.2 16 149-164 36-51 (214)
419 1odf_A YGR205W, hypothetical 3 78.9 0.34 1.2E-05 43.0 -0.4 15 150-164 33-47 (290)
420 2afh_E Nitrogenase iron protei 78.8 0.47 1.6E-05 41.2 0.4 31 150-188 5-35 (289)
421 2pcj_A ABC transporter, lipopr 78.8 0.37 1.3E-05 40.9 -0.2 16 149-164 31-46 (224)
422 2obl_A ESCN; ATPase, hydrolase 78.7 0.34 1.2E-05 44.2 -0.5 27 139-165 59-88 (347)
423 2fu5_C RAS-related protein RAB 78.7 0.69 2.4E-05 36.5 1.4 15 151-165 11-25 (183)
424 2ocp_A DGK, deoxyguanosine kin 78.7 0.49 1.7E-05 40.0 0.5 15 150-164 4-18 (241)
425 1z2a_A RAS-related protein RAB 78.6 0.35 1.2E-05 37.4 -0.4 14 151-164 8-21 (168)
426 3cmu_A Protein RECA, recombina 78.3 0.56 1.9E-05 52.2 0.9 17 149-165 384-400 (2050)
427 1kao_A RAP2A; GTP-binding prot 78.3 0.37 1.3E-05 37.0 -0.4 14 151-164 6-19 (167)
428 2wji_A Ferrous iron transport 78.3 0.39 1.3E-05 37.7 -0.2 14 151-164 6-19 (165)
429 3q9l_A Septum site-determining 78.2 0.45 1.5E-05 40.2 0.1 35 150-191 5-41 (260)
430 2fsf_A Preprotein translocase 78.2 0.89 3E-05 46.4 2.3 53 133-194 74-126 (853)
431 1oix_A RAS-related protein RAB 78.2 0.39 1.3E-05 38.9 -0.3 14 151-164 32-45 (191)
432 2ged_A SR-beta, signal recogni 78.1 0.38 1.3E-05 38.5 -0.4 14 151-164 51-64 (193)
433 2ce2_X GTPase HRAS; signaling 78.0 0.36 1.2E-05 36.9 -0.5 14 151-164 6-19 (166)
434 3d3q_A TRNA delta(2)-isopenten 77.9 0.38 1.3E-05 44.1 -0.5 16 149-164 8-23 (340)
435 4dzz_A Plasmid partitioning pr 77.9 0.38 1.3E-05 39.1 -0.4 33 151-190 5-37 (206)
436 3auy_A DNA double-strand break 77.6 0.39 1.3E-05 43.8 -0.5 21 149-173 26-46 (371)
437 1wms_A RAB-9, RAB9, RAS-relate 77.5 0.4 1.4E-05 37.5 -0.4 14 151-164 10-23 (177)
438 3exa_A TRNA delta(2)-isopenten 77.5 0.53 1.8E-05 42.8 0.4 19 148-166 3-21 (322)
439 2cbz_A Multidrug resistance-as 77.4 0.43 1.5E-05 40.9 -0.2 16 149-164 32-47 (237)
440 1g16_A RAS-related protein SEC 77.2 0.39 1.3E-05 37.2 -0.5 14 151-164 6-19 (170)
441 1ek0_A Protein (GTP-binding pr 76.9 0.42 1.4E-05 36.9 -0.4 14 151-164 6-19 (170)
442 2onk_A Molybdate/tungstate ABC 76.9 0.44 1.5E-05 41.1 -0.3 16 149-164 25-40 (240)
443 3vkg_A Dynein heavy chain, cyt 76.9 0.67 2.3E-05 53.6 1.0 27 139-165 1294-1321(3245)
444 1ky3_A GTP-binding protein YPT 76.9 0.43 1.5E-05 37.4 -0.4 14 151-164 11-24 (182)
445 4i1u_A Dephospho-COA kinase; s 76.8 0.5 1.7E-05 40.2 -0.0 13 152-164 13-25 (210)
446 2erx_A GTP-binding protein DI- 76.6 0.44 1.5E-05 36.8 -0.4 14 151-164 6-19 (172)
447 1e69_A Chromosome segregation 76.4 0.62 2.1E-05 41.5 0.5 17 148-164 24-40 (322)
448 3fdi_A Uncharacterized protein 76.4 0.58 2E-05 39.0 0.3 18 147-164 5-22 (201)
449 1mv5_A LMRA, multidrug resista 76.3 0.63 2.1E-05 39.9 0.5 16 149-164 29-44 (243)
450 2nzj_A GTP-binding protein REM 76.2 0.46 1.6E-05 37.0 -0.4 14 151-164 7-20 (175)
451 1z0j_A RAB-22, RAS-related pro 76.2 0.46 1.6E-05 36.7 -0.4 14 151-164 9-22 (170)
452 3ez9_A Para; DNA binding, wing 76.2 0.57 2E-05 43.0 0.2 51 133-189 86-152 (403)
453 3tw8_B RAS-related protein RAB 76.0 0.49 1.7E-05 37.0 -0.3 14 151-164 12-25 (181)
454 3igf_A ALL4481 protein; two-do 76.0 0.32 1.1E-05 45.0 -1.6 33 150-189 4-36 (374)
455 2zej_A Dardarin, leucine-rich 75.9 0.49 1.7E-05 37.9 -0.3 14 151-164 5-18 (184)
456 1g6h_A High-affinity branched- 75.9 0.5 1.7E-05 41.0 -0.2 16 149-164 34-49 (257)
457 3bs4_A Uncharacterized protein 75.8 0.47 1.6E-05 41.7 -0.5 37 149-192 22-58 (260)
458 3cwq_A Para family chromosome 75.8 0.68 2.3E-05 38.5 0.6 37 150-194 3-41 (209)
459 1u8z_A RAS-related protein RAL 75.8 0.46 1.6E-05 36.4 -0.4 14 151-164 7-20 (168)
460 3foz_A TRNA delta(2)-isopenten 75.6 0.62 2.1E-05 42.2 0.3 17 149-165 11-27 (316)
461 2ipc_A Preprotein translocase 75.6 1 3.5E-05 46.5 1.9 53 133-194 79-131 (997)
462 1ji0_A ABC transporter; ATP bi 75.6 0.52 1.8E-05 40.4 -0.2 16 149-164 33-48 (240)
463 1svi_A GTP-binding protein YSX 75.5 0.43 1.5E-05 38.2 -0.7 14 151-164 26-39 (195)
464 1b0u_A Histidine permease; ABC 75.5 0.53 1.8E-05 41.0 -0.2 16 149-164 33-48 (262)
465 3ez2_A Plasmid partition prote 75.4 0.5 1.7E-05 43.3 -0.4 49 134-188 84-148 (398)
466 2pze_A Cystic fibrosis transme 75.4 0.54 1.8E-05 40.0 -0.2 16 149-164 35-50 (229)
467 1z08_A RAS-related protein RAB 75.4 0.51 1.7E-05 36.6 -0.3 14 151-164 9-22 (170)
468 3q72_A GTP-binding protein RAD 75.2 0.49 1.7E-05 36.6 -0.5 14 151-164 5-18 (166)
469 2y8e_A RAB-protein 6, GH09086P 75.2 0.48 1.6E-05 37.0 -0.5 14 151-164 17-30 (179)
470 2qi9_C Vitamin B12 import ATP- 75.2 0.55 1.9E-05 40.7 -0.2 16 149-164 27-42 (249)
471 1r2q_A RAS-related protein RAB 75.2 0.49 1.7E-05 36.5 -0.4 14 151-164 9-22 (170)
472 3eph_A TRNA isopentenyltransfe 75.1 0.45 1.5E-05 44.7 -0.8 17 149-165 3-19 (409)
473 2axn_A 6-phosphofructo-2-kinas 75.1 0.61 2.1E-05 44.8 0.1 15 150-164 37-51 (520)
474 1moz_A ARL1, ADP-ribosylation 74.9 0.45 1.5E-05 37.5 -0.8 14 151-164 21-34 (183)
475 2lkc_A Translation initiation 74.8 0.53 1.8E-05 36.8 -0.3 14 151-164 11-24 (178)
476 2d2e_A SUFC protein; ABC-ATPas 74.7 0.54 1.9E-05 40.6 -0.3 16 149-164 30-45 (250)
477 1vpl_A ABC transporter, ATP-bi 74.7 0.58 2E-05 40.8 -0.2 16 149-164 42-57 (256)
478 1c1y_A RAS-related protein RAP 74.7 0.52 1.8E-05 36.3 -0.4 14 151-164 6-19 (167)
479 3k53_A Ferrous iron transport 74.6 0.51 1.7E-05 40.8 -0.5 14 151-164 6-19 (271)
480 3clv_A RAB5 protein, putative; 74.5 0.54 1.8E-05 37.3 -0.4 14 151-164 10-23 (208)
481 2olj_A Amino acid ABC transpor 74.5 0.59 2E-05 40.9 -0.2 16 149-164 51-66 (263)
482 2xtp_A GTPase IMAP family memb 74.5 0.54 1.8E-05 40.1 -0.4 19 151-173 25-43 (260)
483 2ff7_A Alpha-hemolysin translo 74.4 0.58 2E-05 40.4 -0.2 16 149-164 36-51 (247)
484 3tif_A Uncharacterized ABC tra 74.2 0.59 2E-05 40.0 -0.2 16 149-164 32-47 (235)
485 3tmk_A Thymidylate kinase; pho 74.2 0.75 2.6E-05 39.1 0.4 16 149-164 6-21 (216)
486 3q85_A GTP-binding protein REM 74.2 0.81 2.8E-05 35.4 0.6 14 151-164 5-18 (169)
487 3bc1_A RAS-related protein RAB 74.0 0.55 1.9E-05 37.1 -0.4 14 151-164 14-27 (195)
488 3lxx_A GTPase IMAP family memb 73.9 0.57 2E-05 39.4 -0.4 19 151-173 32-50 (239)
489 2wjg_A FEOB, ferrous iron tran 73.8 0.56 1.9E-05 37.2 -0.4 14 151-164 10-23 (188)
490 3gfo_A Cobalt import ATP-bindi 73.7 0.62 2.1E-05 41.1 -0.2 16 149-164 35-50 (275)
491 2ihy_A ABC transporter, ATP-bi 73.7 0.63 2.2E-05 41.0 -0.2 16 149-164 48-63 (279)
492 2nq2_C Hypothetical ABC transp 73.7 0.62 2.1E-05 40.4 -0.2 16 149-164 32-47 (253)
493 4dsu_A GTPase KRAS, isoform 2B 73.7 0.58 2E-05 36.9 -0.4 14 151-164 7-20 (189)
494 2ghi_A Transport protein; mult 73.5 0.63 2.2E-05 40.5 -0.2 16 149-164 47-62 (260)
495 3pqc_A Probable GTP-binding pr 73.5 0.52 1.8E-05 37.4 -0.7 15 150-164 25-39 (195)
496 2pjz_A Hypothetical protein ST 73.5 0.63 2.2E-05 40.7 -0.2 16 149-164 31-46 (263)
497 2zu0_C Probable ATP-dependent 73.4 0.62 2.1E-05 40.7 -0.3 16 149-164 47-62 (267)
498 2d7d_A Uvrabc system protein B 73.4 2.2 7.4E-05 42.2 3.6 53 132-194 11-68 (661)
499 3ld9_A DTMP kinase, thymidylat 73.3 0.87 3E-05 38.9 0.6 40 149-194 22-63 (223)
500 2yc2_C IFT27, small RAB-relate 73.2 0.74 2.5E-05 37.0 0.1 14 151-164 23-36 (208)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=99.95 E-value=8.2e-28 Score=239.22 Aligned_cols=170 Identities=15% Similarity=0.128 Sum_probs=125.9
Q ss_pred ccccCCCCCCCCeEEEEecCCCCCCCCCCCCceeeEEEEEeeCceEEEEcCCCCCCC-CCcCCCceeecccccchHHHHH
Q psy4476 8 TCVELHALDAGDELKLAATSYDASTPGSGPRSRGLRFRIILPVTEVGLELKSSAGAP-TESYHGLFCGPSFWKSTSFDRM 86 (266)
Q Consensus 8 ~cl~~~~l~~GD~V~l~~~~~~~~~~~~~~~~~~~G~V~kv~~~~V~v~l~~~~~~p-~~~~~~~~~v~~~~n~~t~~R~ 86 (266)
.++|.|.|.+||+|.++..... ..+.+.|+|+++..++|+|.++...... .....+.|++++.+|+++|+||
T Consensus 74 ~~l~~~~~~~Gd~v~~~~~~~~-------~~~~~~g~v~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 146 (646)
T 4b3f_X 74 AALPSNSFTSGDIVGLYDAANE-------GSQLATGILTRVTQKSVTVAFDESHDFQLSLDRENSYRLLKLANDVTYRRL 146 (646)
T ss_dssp CCCCCCCCCTTCEEEEEETTTT-------SCCCEEEEEEEEETTEEEEECC-------CCCSSCCEEEEEECCHHHHHHH
T ss_pred CCCccCCCCCCCEEEEEecCCC-------CCceEEEEEEEEeCCEEEEEECCccccccccCCCCcEEEEEeccchHHHHH
Confidence 3688999999999999865542 2345789999999999999998543211 1112235999999999999999
Q ss_pred HHHHHHhHHhccchHHHHHHHHcCCCCchhhhhccCCCCCCCCCCCCCCHHHHHHHHHHHh-CCCeEEEcCCCCCcceEe
Q psy4476 87 QLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQ-RPLSLIQGMNQRSNGLHH 165 (266)
Q Consensus 87 ~~aL~~l~~~e~~~~~~L~~~l~g~~~~~~~~~~~~~~~~~~~~~~~LN~sQ~~AV~~aL~-~~~tLIqGPPGTGKTtTi 165 (266)
+.||..+..........+++.++|...+..... ..+..+ ....||++|++||..||. ++++|||||||||||+|
T Consensus 147 ~~al~~l~~~~~~~~~~l~~~l~~~~~p~~~~~-~~~~~~---~~~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~t- 221 (646)
T 4b3f_X 147 KKALIALKKYHSGPASSLIEVLFGRSAPSPASE-IHPLTF---FNTCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTT- 221 (646)
T ss_dssp HHHHHHHHTCCSSTTHHHHHHHTTSSCCCCCCC-CCCCCC---SSTTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHH-
T ss_pred HHHHHHhhhcccCchHHHHHHHcCCCCCCCccc-cCcccc---cCCCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHH-
Confidence 999999987666667788999998743321111 111111 235799999999999997 57999999999999999
Q ss_pred CccccccccchhhhhccCCceEecCCCCcc
Q psy4476 166 QPGGAGIGNSANTNRLRNKSNLNHRPSGAN 195 (266)
Q Consensus 166 v~~i~~Ii~~~~~~~~~~~kiLvcAPSN~a 195 (266)
+++++ ..+.+ .+.+||||||||.|
T Consensus 222 ---i~~~I--~~l~~-~~~~ILv~a~TN~A 245 (646)
T 4b3f_X 222 ---VVEII--LQAVK-QGLKVLCCAPSNIA 245 (646)
T ss_dssp ---HHHHH--HHHHH-TTCCEEEEESSHHH
T ss_pred ---HHHHH--HHHHh-CCCeEEEEcCchHH
Confidence 45555 23333 57899999999996
No 2
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=99.93 E-value=4.1e-26 Score=226.47 Aligned_cols=172 Identities=48% Similarity=0.702 Sum_probs=132.9
Q ss_pred cCCCCCCCCeEEEEecCCCCCCCCCCCCceeeEEEEEeeC---ceEEEEcCCCCCCCCCcCCCceeecccccchHHHHHH
Q psy4476 11 ELHALDAGDELKLAATSYDASTPGSGPRSRGLRFRIILPV---TEVGLELKSSAGAPTESYHGLFCGPSFWKSTSFDRMQ 87 (266)
Q Consensus 11 ~~~~l~~GD~V~l~~~~~~~~~~~~~~~~~~~G~V~kv~~---~~V~v~l~~~~~~p~~~~~~~~~v~~~~n~~t~~R~~ 87 (266)
..++|..||+|.++..+.. ...|.+.|+|+++.. ++|.+++......|.+.... |.++++|++++|+||.
T Consensus 62 ~~~~~~~Gd~v~l~~~~~~------~~~~~~~g~v~~~~~~~~~~v~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~ 134 (624)
T 2gk6_A 62 SDMRLMQGDEICLRYKGDL------APLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN-FQVDFVWKSTSFDRMQ 134 (624)
T ss_dssp ----CCTTCEEEEEECSSS------SCCCEEEEEEEECSCSSCSEEEEEESCCTTCCCSCCSS-EEEEECCCCHHHHHHH
T ss_pred cCCcCCCCCEEEEEECCCC------CCCcEEEEEEEEecCCCCCEEEEEEccCCCCccccccc-eEEEEEeCCchHHHHH
Confidence 3468999999999976542 356788999999975 78999997544445443333 9999999999999999
Q ss_pred HHHHHhHHhccchHHHHHHHHcCCCCchhhhhccCCCCCCCCCCCCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCc
Q psy4476 88 LALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQP 167 (266)
Q Consensus 88 ~aL~~l~~~e~~~~~~L~~~l~g~~~~~~~~~~~~~~~~~~~~~~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~ 167 (266)
.||++++.++...+.++++.+++...+...+...+|..|..+....||++|++||..++.+++++|+||||||||+|
T Consensus 135 ~al~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~--- 211 (624)
T 2gk6_A 135 SALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT--- 211 (624)
T ss_dssp HHHHHHHHCTTSBCSHHHHHHTTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHH---
T ss_pred HHHHHHHhccccchHHHHHHhcCCCCccccccccCcccccccccCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHH---
Confidence 99999998877777888999998754433344445555555556789999999999999999999999999999999
Q ss_pred cccccccchhhhhccCCceEecCCCCcc
Q psy4476 168 GGAGIGNSANTNRLRNKSNLNHRPSGAN 195 (266)
Q Consensus 168 ~i~~Ii~~~~~~~~~~~kiLvcAPSN~a 195 (266)
++.++ ..+.+..+.+||+|||||.|
T Consensus 212 -~~~~i--~~l~~~~~~~ilv~a~tn~A 236 (624)
T 2gk6_A 212 -SATIV--YHLARQGNGPVLVCAPSNIA 236 (624)
T ss_dssp -HHHHH--HHHHTSSSCCEEEEESSHHH
T ss_pred -HHHHH--HHHHHcCCCeEEEEeCcHHH
Confidence 55555 23333356899999999985
No 3
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=99.92 E-value=3.4e-25 Score=225.58 Aligned_cols=172 Identities=48% Similarity=0.702 Sum_probs=135.2
Q ss_pred cCCCCCCCCeEEEEecCCCCCCCCCCCCceeeEEEEEeeC---ceEEEEcCCCCCCCCCcCCCceeecccccchHHHHHH
Q psy4476 11 ELHALDAGDELKLAATSYDASTPGSGPRSRGLRFRIILPV---TEVGLELKSSAGAPTESYHGLFCGPSFWKSTSFDRMQ 87 (266)
Q Consensus 11 ~~~~l~~GD~V~l~~~~~~~~~~~~~~~~~~~G~V~kv~~---~~V~v~l~~~~~~p~~~~~~~~~v~~~~n~~t~~R~~ 87 (266)
+..+|.+||+|.+++.+.. ...|...|+|+++.. ++|.+++......|.....+ |.++++|++++|+||+
T Consensus 238 ~~~~l~~GD~v~l~~~~~~------~~~~~~~g~V~~v~~~~~~~v~l~~~~~~~~p~~~~~~-~~v~~~~~~~~~~r~~ 310 (800)
T 2wjy_A 238 SDMRLMQGDEICLRYKGDL------APLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN-FQVDFVWKSTSFDRMQ 310 (800)
T ss_dssp C--CCCTTCEEEEEECSSS------SCCEEEEEEEEECSBTTBSCEEEEESCCTTCCTTCCSC-EEEEECCCCHHHHHHH
T ss_pred CCCCCCCCCEEEEEECCCC------CCCceeEEEEEEEcCCCCCEEEEEEccCCCCccccCCC-ceEEEeecCChHHHHH
Confidence 3467999999999976542 255788999999976 78999987544445443344 9999999999999999
Q ss_pred HHHHHhHHhccchHHHHHHHHcCCCCchhhhhccCCCCCCCCCCCCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCc
Q psy4476 88 LALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQP 167 (266)
Q Consensus 88 ~aL~~l~~~e~~~~~~L~~~l~g~~~~~~~~~~~~~~~~~~~~~~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~ 167 (266)
.||++++.++..++.+|++.+++...+...+...+++.|..+....||++|++||..++.+++++|+||||||||+|
T Consensus 311 ~aL~~~~~~e~~~~~~l~~~ll~~~~~~~~~~~~l~~~~~~~~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t--- 387 (800)
T 2wjy_A 311 SALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT--- 387 (800)
T ss_dssp HHHHHHHHCTTSBCHHHHHHHTTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH---
T ss_pred HHHHHHHHhhcchhHHHHHHhcCCCCCchhhcccCccccccccccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH---
Confidence 99999999988888999998888754443444445555554556789999999999999999999999999999999
Q ss_pred cccccccchhhhhccCCceEecCCCCcc
Q psy4476 168 GGAGIGNSANTNRLRNKSNLNHRPSGAN 195 (266)
Q Consensus 168 ~i~~Ii~~~~~~~~~~~kiLvcAPSN~a 195 (266)
+..++ ..+.+..+.+||+|||||.|
T Consensus 388 -i~~~i--~~l~~~~~~~ilv~a~tn~A 412 (800)
T 2wjy_A 388 -SATIV--YHLARQGNGPVLVCAPSNIA 412 (800)
T ss_dssp -HHHHH--HHHHTTCSSCEEEEESSHHH
T ss_pred -HHHHH--HHHHHcCCCcEEEEcCcHHH
Confidence 55565 23333356899999999985
No 4
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.4e-24 Score=221.22 Aligned_cols=171 Identities=40% Similarity=0.599 Sum_probs=132.5
Q ss_pred CCCCCCCCeEEEEecCCCCCCCCCCCCceeeEEEEEeeC---ceEEEEcCCCCC-CCCCcCCCceeecccccchHHHHHH
Q psy4476 12 LHALDAGDELKLAATSYDASTPGSGPRSRGLRFRIILPV---TEVGLELKSSAG-APTESYHGLFCGPSFWKSTSFDRMQ 87 (266)
Q Consensus 12 ~~~l~~GD~V~l~~~~~~~~~~~~~~~~~~~G~V~kv~~---~~V~v~l~~~~~-~p~~~~~~~~~v~~~~n~~t~~R~~ 87 (266)
.++|.+||+|.++..+.. ...|...|+|+++.. ++|++++..... .|.+...+ |.++++|++++|+||+
T Consensus 242 ~~~~~~GD~v~l~~~~~~------~~~~~~~g~V~~v~~~~~~~v~v~~~~~~~~~p~~~~~~-~~v~~~~~~~~~~r~~ 314 (802)
T 2xzl_A 242 ELKVAIGDEMILWYSGMQ------HPDWEGRGYIVRLPNSFQDTFTLELKPSKTPPPTHLTTG-FTAEFIWKGTSYDRMQ 314 (802)
T ss_dssp --CCCTTCEEEEEECSSS------SSCEEEEEEEEECCC---CCEEEEECCCSSCCCTTCCSS-EEEEECCCCHHHHHHH
T ss_pred CCCCCCCCEEEEEECCCC------CCceeEEEEEEEECCCCCCEEEEEEeCCCCCCccccCCC-eEEEEEecCchHHHHH
Confidence 467999999999975542 346778999999975 689999974332 34333344 9999999999999999
Q ss_pred HHHHHhHHhccchHHHHHHHHcCCCCchhhhhccCCCCCCCCCCCCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCc
Q psy4476 88 LALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQP 167 (266)
Q Consensus 88 ~aL~~l~~~e~~~~~~L~~~l~g~~~~~~~~~~~~~~~~~~~~~~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~ 167 (266)
.||++++.++..++.+|++.+++...+...+...+|..+..+....||++|++||..++.+++++|+||||||||+|
T Consensus 315 ~AL~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~lp~~~~~~~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~--- 391 (802)
T 2xzl_A 315 DALKKFAIDKKSISGYLYYKILGHQVVDISFDVPLPKEFSIPNFAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVT--- 391 (802)
T ss_dssp HHHHHHHHCTTSBCHHHHHHHHTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHH---
T ss_pred HHHHHHHhccccchhHHHHHhcCCccccccccccCcccccccccccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHH---
Confidence 99999988877778889999888754443444445555555556789999999999999999999999999999999
Q ss_pred cccccccchhhhhccCCceEecCCCCcc
Q psy4476 168 GGAGIGNSANTNRLRNKSNLNHRPSGAN 195 (266)
Q Consensus 168 ~i~~Ii~~~~~~~~~~~kiLvcAPSN~a 195 (266)
+..++. .+.+..+.+||+|||||.|
T Consensus 392 -i~~~i~--~l~~~~~~~ILv~a~tn~A 416 (802)
T 2xzl_A 392 -SATIVY--HLSKIHKDRILVCAPSNVA 416 (802)
T ss_dssp -HHHHHH--HHHHHHCCCEEEEESSHHH
T ss_pred -HHHHHH--HHHhCCCCeEEEEcCcHHH
Confidence 455552 3333257899999999985
No 5
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.69 E-value=4.2e-18 Score=167.70 Aligned_cols=137 Identities=12% Similarity=0.128 Sum_probs=101.7
Q ss_pred HHHHhHHhccchHHHHHHHHcCCCC---chhhhhccCCCCCCCCCCCCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEe
Q psy4476 89 ALRKFAVDDQSVSAYIYHRLLGHNV---DEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHH 165 (266)
Q Consensus 89 aL~~l~~~e~~~~~~L~~~l~g~~~---~~~~~~~~~~~~~~~~~~~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTi 165 (266)
+|.+++..|..++..|.+++.+... ...+... +.+. ...||++|++|+..++.+++.+|+|||||||||+
T Consensus 148 yl~~~~~~E~~ia~~l~~~~~~~~~~~~~~~~~~~-l~~~-----~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~- 220 (574)
T 3e1s_A 148 YLPHVLRAEKKLASLIRTLLATPPADGAGNDDWAV-PKKA-----RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT- 220 (574)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHSCCCC-CCCCCCCC-CTTT-----TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-
T ss_pred EcHHHHHHHHHHHHHHHHHhccCCccCCChhhHHH-HHhh-----cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-
Confidence 4555566666777777766544321 1111111 2211 3579999999999999999999999999999999
Q ss_pred CccccccccchhhhhccCCceEecCCCCc--ccccccccccCcccccccc-cccccccCCCCcccCC-CCCCcceeee--
Q psy4476 166 QPGGAGIGNSANTNRLRNKSNLNHRPSGA--NKLSQGHLSQGNNSQEITQ-PYSQVMSQGGGFSLSQ-ADLSQDSLMM-- 239 (266)
Q Consensus 166 v~~i~~Ii~~~~~~~~~~~kiLvcAPSN~--arl~~g~~~~g~~~~~i~~-~~~~~~~~~g~~~~~~-~~~~~d~~~~-- 239 (266)
+.+|+ ..+.. .+.+|++|||||. ++|.+ .+|..+.|||+ +++. + .+|..+. +++..|++|+
T Consensus 221 ---i~~l~--~~l~~-~g~~Vl~~ApT~~Aa~~L~e---~~~~~a~Tih~ll~~~--~--~~~~~~~~~~~~~dvlIIDE 287 (574)
T 3e1s_A 221 ---TKAVA--DLAES-LGLEVGLCAPTGKAARRLGE---VTGRTASTVHRLLGYG--P--QGFRHNHLEPAPYDLLIVDE 287 (574)
T ss_dssp ---HHHHH--HHHHH-TTCCEEEEESSHHHHHHHHH---HHTSCEEEHHHHTTEE--T--TEESCSSSSCCSCSEEEECC
T ss_pred ---HHHHH--HHHHh-cCCeEEEecCcHHHHHHhHh---hhcccHHHHHHHHcCC--c--chhhhhhcccccCCEEEEcC
Confidence 66666 23333 5789999999998 48888 88999999999 8775 4 2677776 8999999998
Q ss_pred -eecccc
Q psy4476 240 -SQLDGM 245 (266)
Q Consensus 240 -s~~d~~ 245 (266)
||+|..
T Consensus 288 asml~~~ 294 (574)
T 3e1s_A 288 VSMMGDA 294 (574)
T ss_dssp GGGCCHH
T ss_pred ccCCCHH
Confidence 888764
No 6
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.61 E-value=5.4e-17 Score=160.67 Aligned_cols=143 Identities=20% Similarity=0.190 Sum_probs=89.9
Q ss_pred HHHHhHHhccchHHHHHHHHcCCCCchhhhhccCCCCCCCCCCCCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCcc
Q psy4476 89 ALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPG 168 (266)
Q Consensus 89 aL~~l~~~e~~~~~~L~~~l~g~~~~~~~~~~~~~~~~~~~~~~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~ 168 (266)
+|.+++..|..++.+|.+.....+++.......+.+.|.. ...+++|+.|+..++.+++.+|+||||||||||
T Consensus 108 yl~~~~~~E~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~---- 180 (608)
T 1w36_D 108 YLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPV---SDEINWQKVAAAVALTRRISVISGGPGTGKTTT---- 180 (608)
T ss_dssp EEHHHHHHHHHHHHHHTSCCBCCCCCHHHHHHHHHTTCCC---TTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHH----
T ss_pred EeHHHHHHHHHHHHHHHHhCcCCCCCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHH----
Confidence 5667777777777776553221222322233333333321 122688999999999999999999999999999
Q ss_pred ccccccchhhhh---ccCCceEecCCCCcc--cccccccccC-----------------cccccccc-cccccccCCCCc
Q psy4476 169 GAGIGNSANTNR---LRNKSNLNHRPSGAN--KLSQGHLSQG-----------------NNSQEITQ-PYSQVMSQGGGF 225 (266)
Q Consensus 169 i~~Ii~~~~~~~---~~~~kiLvcAPSN~a--rl~~g~~~~g-----------------~~~~~i~~-~~~~~~~~~g~~ 225 (266)
++.++. .+.+ ..+.+|++|||||.| +|.+ ..| ..++|||+ ++.. +...+|
T Consensus 181 l~~ll~--~l~~~~~~~~~~vll~APTg~AA~~L~e---~~~~~~~~l~l~~~~~~~~~~~~~Tih~ll~~~--~~~~~~ 253 (608)
T 1w36_D 181 VAKLLA--ALIQMADGERCRIRLAAPTGKAAARLTE---SLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQ--PGSQRL 253 (608)
T ss_dssp HHHHHH--HHHHTCSSCCCCEEEEBSSHHHHHHHHH---HHTHHHHHSSCCSCCCCSCSCCCBTTTSCC-----------
T ss_pred HHHHHH--HHHHhhhcCCCeEEEEeCChhHHHHHHH---HHHHHHhcCCCCHHHHhccchhhhhhHhhhccC--CCchHH
Confidence 555552 3322 235699999999984 6665 322 25789999 7653 333347
Q ss_pred ccCC-CCCCcceeee---eecccc
Q psy4476 226 SLSQ-ADLSQDSLMM---SQLDGM 245 (266)
Q Consensus 226 ~~~~-~~~~~d~~~~---s~~d~~ 245 (266)
.... +++..|+||+ ||+|..
T Consensus 254 ~~~~~~~l~~d~lIIDEAsml~~~ 277 (608)
T 1w36_D 254 RHHAGNPLHLDVLVVDEASMIDLP 277 (608)
T ss_dssp --CTTSCCSCSEEEECSGGGCBHH
T ss_pred HhccCCCCCCCEEEEechhhCCHH
Confidence 6665 8889999998 888853
No 7
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.22 E-value=2.5e-12 Score=122.73 Aligned_cols=104 Identities=16% Similarity=0.086 Sum_probs=71.4
Q ss_pred CCCCCHHHHHHHHHHHh-----CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCcc--cccccccc
Q psy4476 131 LPDLNRSQVYAVKHAIQ-----RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGAN--KLSQGHLS 203 (266)
Q Consensus 131 ~~~LN~sQ~~AV~~aL~-----~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~a--rl~~g~~~ 203 (266)
+..||+.|++||..++. .+..+|+||||||||++ +..++. .+...+..+|++|||||.| .|.+ .
T Consensus 23 ~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l----l~~~~~--~l~~~~~~~il~~a~T~~Aa~~l~~---~ 93 (459)
T 3upu_A 23 FDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL----TKFIIE--ALISTGETGIILAAPTHAAKKILSK---L 93 (459)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH----HHHHHH--HHHHTTCCCEEEEESSHHHHHHHHH---H
T ss_pred cccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH----HHHHHH--HHHhcCCceEEEecCcHHHHHHHHh---h
Confidence 45799999999998864 35899999999999999 555552 3333333589999999984 5666 5
Q ss_pred cCcccccccc-cccccc--cCCCCcccCC--CCCCcceeee---eecc
Q psy4476 204 QGNNSQEITQ-PYSQVM--SQGGGFSLSQ--ADLSQDSLMM---SQLD 243 (266)
Q Consensus 204 ~g~~~~~i~~-~~~~~~--~~~g~~~~~~--~~~~~d~~~~---s~~d 243 (266)
.|..+.|+|+ ++.... ...+.|.... .....|++|+ +|++
T Consensus 94 ~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~ 141 (459)
T 3upu_A 94 SGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYD 141 (459)
T ss_dssp HSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCC
T ss_pred hccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCC
Confidence 5888899998 653200 1112243332 3335777777 5655
No 8
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.78 E-value=2.8e-10 Score=111.81 Aligned_cols=85 Identities=14% Similarity=-0.004 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhh--ccCCceEecCCCCcc------cccc--cc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNR--LRNKSNLNHRPSGAN------KLSQ--GH 201 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~--~~~~kiLvcAPSN~a------rl~~--g~ 201 (266)
..||+.|++||.. .....+|+||||||||+|++. .|. +.+.. ....+||++++||.| |+.+ |.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~---ri~--~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVH---RIA--WLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHH---HHH--HHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHH---HHH--HHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 4799999999983 256789999999999999633 233 22221 134689999999984 4443 22
Q ss_pred cccCcccccccccccccccCCC
Q psy4476 202 LSQGNNSQEITQPYSQVMSQGG 223 (266)
Q Consensus 202 ~~~g~~~~~i~~~~~~~~~~~g 223 (266)
...+....|+|++...+++..+
T Consensus 81 ~~~~~~v~Tfhs~~~~il~~~~ 102 (647)
T 3lfu_A 81 SQGGMWVGTFHGLAHRLLRAHH 102 (647)
T ss_dssp CCTTCEEEEHHHHHHHHHHHTT
T ss_pred ccCCcEEEcHHHHHHHHHHHHH
Confidence 2245567799986555565443
No 9
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=98.14 E-value=2.5e-07 Score=93.06 Aligned_cols=83 Identities=12% Similarity=0.040 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhh--ccCCceEecCCCCcc------cccc--cc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNR--LRNKSNLNHRPSGAN------KLSQ--GH 201 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~--~~~~kiLvcAPSN~a------rl~~--g~ 201 (266)
..||+.|++||.. .....+|.|+||||||+|++. .|. +.+.. ....+||+++.||.| |+.+ |.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~---ri~--~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~ 82 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTH---RIA--YLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGG 82 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHH---HHH--HHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHH---HHH--HHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcc
Confidence 4699999999986 356789999999999999633 233 22221 234689999999984 4433 22
Q ss_pred cccCcccccccccccccccC
Q psy4476 202 LSQGNNSQEITQPYSQVMSQ 221 (266)
Q Consensus 202 ~~~g~~~~~i~~~~~~~~~~ 221 (266)
-..+..-.|+|.+...+++.
T Consensus 83 ~~~~~~v~Tfhs~~~~ilr~ 102 (724)
T 1pjr_A 83 AAEDVWISTFHSMCVRILRR 102 (724)
T ss_dssp GGTTSEEEEHHHHHHHHHHH
T ss_pred cccCcEEeeHHHHHHHHHHH
Confidence 22345567999855444543
No 10
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=98.08 E-value=2.8e-07 Score=91.51 Aligned_cols=82 Identities=12% Similarity=0.040 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhh--ccCCceEecCCCCcc------cccc--c-c
Q psy4476 133 DLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNR--LRNKSNLNHRPSGAN------KLSQ--G-H 201 (266)
Q Consensus 133 ~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~--~~~~kiLvcAPSN~a------rl~~--g-~ 201 (266)
.||+.|++||.. .....+|.|+||||||+|+++ .|. +.+.. ....+||+++.||.| |+.+ | .
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~---ri~--~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~ 74 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITN---KIA--HLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRK 74 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHH---HHH--HHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTT
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHH---HHH--HHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcc
Confidence 599999999985 256789999999999999633 233 22222 234789999999985 4433 1 1
Q ss_pred cccCcccccccccccccccC
Q psy4476 202 LSQGNNSQEITQPYSQVMSQ 221 (266)
Q Consensus 202 ~~~g~~~~~i~~~~~~~~~~ 221 (266)
...+..-.|+|.+...++++
T Consensus 75 ~~~~~~v~Tfhs~~~~il~~ 94 (673)
T 1uaa_A 75 EARGLMISTFHTLGLDIIKR 94 (673)
T ss_dssp TTTTSEEEEHHHHHHHHHHH
T ss_pred cccCCEEEeHHHHHHHHHHH
Confidence 12345566999855545553
No 11
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.82 E-value=5.4e-06 Score=69.18 Aligned_cols=58 Identities=9% Similarity=-0.076 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhh----ccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNR----LRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~----~~~~kiLvcAPSN~ 194 (266)
..|++.|++|+..++...-.+|++|+|+|||.+. ..++. ..+.+ ....++|+.+|+..
T Consensus 32 ~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~----~~~~~-~~~~~~~~~~~~~~~lil~p~~~ 93 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVA----VYIAK-DHLDKKKKASEPGKVIVLVNKVL 93 (216)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHH----HHHHH-HHHHHHHHTTCCCCEEEEESSHH
T ss_pred CCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHH----HHHHH-HHHhhcccccCCCcEEEEECHHH
Confidence 4789999999999998888999999999999983 22221 11111 12578999999976
No 12
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.80 E-value=1.5e-05 Score=66.36 Aligned_cols=59 Identities=10% Similarity=-0.076 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..+++.|++|+..++...-.+|++|+|+|||.+. ...++. .......+.++++.+|+..
T Consensus 24 ~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~---~~~~~~-~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 24 EKPSPIQEESIPIALSGRDILARAKNGTGKSGAY---LIPLLE-RLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHH---HHHHHH-HCCTTSCSCCEEEECSCHH
T ss_pred CCCCHHHHHHHHHHccCCCEEEECCCCCchHHHH---HHHHHH-HhcccCCCeeEEEEeCcHH
Confidence 4688999999999998888999999999999873 112221 1111123468999999976
No 13
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.80 E-value=1.4e-05 Score=66.46 Aligned_cols=58 Identities=17% Similarity=0.081 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhh----hccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTN----RLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~----~~~~~kiLvcAPSN~ 194 (266)
..+++.|++|+..++...-.+|++|+|+|||.+. +..++. .+. ...+.++|+.+|+..
T Consensus 22 ~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~---~~~~~~--~l~~~~~~~~~~~~lil~P~~~ 83 (207)
T 2gxq_A 22 TTPTPIQAAALPLALEGKDLIGQARTGTGKTLAF---ALPIAE--RLAPSQERGRKPRALVLTPTRE 83 (207)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH---HHHHHH--HCCCCCCTTCCCSEEEECSSHH
T ss_pred CCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHH---HHHHHH--HHhhccccCCCCcEEEEECCHH
Confidence 4688999999999999888999999999999883 112221 111 124568999999965
No 14
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.79 E-value=1.4e-05 Score=67.63 Aligned_cols=59 Identities=12% Similarity=0.016 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..+++.|++|+..++...-.+|++|+|+|||.+. ...++. .......+.++|+.+|+..
T Consensus 35 ~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~---~~~~l~-~l~~~~~~~~~lil~Pt~~ 93 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF---SIAALQ-RIDTSVKAPQALMLAPTRE 93 (224)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH---HHHHHH-HCCTTCCSCCEEEECSSHH
T ss_pred CCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHH---HHHHHH-HHhccCCCceEEEEECCHH
Confidence 4688999999999998878999999999999872 112221 1111224568999999976
No 15
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.68 E-value=2.1e-05 Score=70.43 Aligned_cols=58 Identities=7% Similarity=-0.046 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHhC-CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQR-PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~-~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..+++.|++|+..++.. .-.+|++|+|+|||.+. +..++ ..+....+.++|+.+|+..
T Consensus 27 ~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~---~~~~~--~~~~~~~~~~~lil~P~~~ 85 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASF---AIPLI--ELVNENNGIEAIILTPTRE 85 (367)
T ss_dssp CSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHH---HHHHH--HHSCSSSSCCEEEECSCHH
T ss_pred CCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHH---HHHHH--HHhcccCCCcEEEEcCCHH
Confidence 46889999999999987 68899999999999983 11222 1222224678999999976
No 16
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.66 E-value=6.4e-06 Score=78.60 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=47.8
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCcc------cccc-cc-cccCcccccccc-cccccc
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGAN------KLSQ-GH-LSQGNNSQEITQ-PYSQVM 219 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~a------rl~~-g~-~~~g~~~~~i~~-~~~~~~ 219 (266)
++++|.||||+|||+.| ..++ . ..++++++|++.+ ++.. |. ..+.....|++. | +
T Consensus 162 ~v~~I~G~aGsGKTt~I----~~~~------~--~~~~lVlTpT~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL----~ 225 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEI----LSRV------N--FEEDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFL----M 225 (446)
T ss_dssp EEEEEEECTTSCHHHHH----HHHC------C--TTTCEEEESCHHHHHHHHHHHTTTSCCCCCTTTEEEHHHHH----H
T ss_pred cEEEEEcCCCCCHHHHH----HHHh------c--cCCeEEEeCCHHHHHHHHHHhhhcCccccccceEEEeHHhh----c
Confidence 57899999999999993 2222 1 2578999999984 2222 11 223345567775 2 1
Q ss_pred cCCCCcccCCCCCCcceeee---eeccc
Q psy4476 220 SQGGGFSLSQADLSQDSLMM---SQLDG 244 (266)
Q Consensus 220 ~~~g~~~~~~~~~~~d~~~~---s~~d~ 244 (266)
. .+ ..+++..|.+|+ ||+|.
T Consensus 226 ~-~~----~~~~~~~d~liiDE~sm~~~ 248 (446)
T 3vkw_A 226 N-YG----KGARCQFKRLFIDEGLMLHT 248 (446)
T ss_dssp T-TT----SSCCCCCSEEEEETGGGSCH
T ss_pred C-CC----CCCCCcCCEEEEeCcccCCH
Confidence 1 11 124577999998 78773
No 17
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.66 E-value=3e-05 Score=66.27 Aligned_cols=59 Identities=12% Similarity=-0.051 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhh-----hccCCceEecCCCCc
Q psy4476 131 LPDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTN-----RLRNKSNLNHRPSGA 194 (266)
Q Consensus 131 ~~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~-----~~~~~kiLvcAPSN~ 194 (266)
...+++.|++|+..++..+-.+|++|+|+|||.+. +..++. .+. ...+.++|+.+|+..
T Consensus 45 ~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~---~~~~l~--~l~~~~~~~~~~~~~lil~Pt~~ 108 (236)
T 2pl3_A 45 YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF---LVPVLE--ALYRLQWTSTDGLGVLIISPTRE 108 (236)
T ss_dssp CCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH---HHHHHH--HHHHTTCCGGGCCCEEEECSSHH
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH---HHHHHH--HHHhhcccccCCceEEEEeCCHH
Confidence 35689999999999999888999999999999973 111221 111 124678999999976
No 18
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.64 E-value=3.1e-05 Score=65.29 Aligned_cols=58 Identities=12% Similarity=-0.102 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhh-ccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNR-LRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~-~~~~kiLvcAPSN~ 194 (266)
..+++.|++|+..++...-.+|++|+|+|||.+. +..++. .+.. ....++|+.+|+..
T Consensus 35 ~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~---~~~~~~--~~~~~~~~~~~lil~Pt~~ 93 (220)
T 1t6n_A 35 EHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVF---VLATLQ--QLEPVTGQVSVLVMCHTRE 93 (220)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH---HHHHHH--HCCCCTTCCCEEEECSCHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhh---hHHHHH--hhhccCCCEEEEEEeCCHH
Confidence 4588999999999998877999999999999873 122221 1111 12358999999976
No 19
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.61 E-value=3.2e-05 Score=67.07 Aligned_cols=54 Identities=15% Similarity=-0.068 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 131 LPDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 131 ~~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
...|++.|++|+..++..+-.+|.||+|+|||.+. ..++ .. .+.++++.+|+..
T Consensus 91 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a----~~~~-----~~-~~~~~liv~P~~~ 144 (237)
T 2fz4_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVA----MAAI-----NE-LSTPTLIVVPTLA 144 (237)
T ss_dssp CCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHH----HHHH-----HH-SCSCEEEEESSHH
T ss_pred CCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHH----HHHH-----HH-cCCCEEEEeCCHH
Confidence 35799999999999888766999999999999982 2222 12 2578999999965
No 20
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.60 E-value=1.8e-05 Score=67.99 Aligned_cols=59 Identities=12% Similarity=0.030 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..+++.|++|+..++...-.+|++|+|+|||.+. +..++. .......+.++|+.+|+..
T Consensus 51 ~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~---~l~~l~-~l~~~~~~~~~lil~Pt~~ 109 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATF---AISILQ-QLEIEFKETQALVLAPTRE 109 (237)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHH---HHHHHH-HCCTTSCSCCEEEECSSHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH---HHHHHH-HHHhcCCCceEEEEECcHH
Confidence 4588999999999998877999999999999873 122221 1111113568999999976
No 21
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.59 E-value=2.1e-05 Score=69.33 Aligned_cols=57 Identities=14% Similarity=-0.034 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..|.+.|.+|+..++.+.-.+|.+|+|+|||.+ ...++. ..+ .....++|+.+|+..
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~----~~~~~~-~~~-~~~~~~~lil~Pt~~ 168 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLI----QALLAR-YYL-ENYEGKILIIVPTTA 168 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHH----HHHHHH-HHH-HHCSSEEEEECSSHH
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHH----HHHHHH-HHH-HcCCCeEEEEECCHH
Confidence 368999999999999877779999999999999 322231 112 223458999999976
No 22
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.54 E-value=3.2e-05 Score=65.42 Aligned_cols=59 Identities=8% Similarity=-0.098 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..+++.|++|+..++...-.+|++|.|+|||.+. ...++. .......+.++|+.+|+..
T Consensus 25 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~---~~~~l~-~l~~~~~~~~~lil~Pt~~ 83 (219)
T 1q0u_A 25 YKPTEIQERIIPGALRGESMVGQSQTGTGKTHAY---LLPIME-KIKPERAEVQAVITAPTRE 83 (219)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHH---HHHHHH-HCCTTSCSCCEEEECSSHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHH---HHHHHH-HHHhCcCCceEEEEcCcHH
Confidence 4688999999999999888899999999999873 112221 1111113568999999976
No 23
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.52 E-value=5.7e-05 Score=65.70 Aligned_cols=59 Identities=15% Similarity=-0.013 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..+++.|++|+..++...-.+|++|.|+|||.+. ...++. .......+.++|+.+|+..
T Consensus 64 ~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~---~~~il~-~l~~~~~~~~~lil~Ptr~ 122 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAF---ALPILN-ALLETPQRLFALVLTPTRE 122 (249)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH---HHHHHH-HHHHSCCSSCEEEECSSHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHh---HHHHHH-HHhcCCCCceEEEEeCCHH
Confidence 4688999999999999888999999999999873 122221 1111213457999999976
No 24
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.51 E-value=1.2e-05 Score=85.19 Aligned_cols=62 Identities=11% Similarity=-0.090 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCcc
Q psy4476 131 LPDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGAN 195 (266)
Q Consensus 131 ~~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~a 195 (266)
...||+.|++||..- ....+|.|+||||||+++++.++.++. .........+||+.++||+|
T Consensus 8 ~~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~-~~~~~~~~~~il~~Tft~~a 69 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKIT-AEENPIDVDRLLVVTFTNAS 69 (1232)
T ss_dssp --CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHS-CSSSCCCGGGEEEECSSHHH
T ss_pred CCCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHh-cCCCCCCccceEEEeccHHH
Confidence 357999999999864 667899999999999996433222221 00000133589999999984
No 25
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.51 E-value=5.8e-05 Score=68.85 Aligned_cols=59 Identities=15% Similarity=-0.006 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..|++.|++|+..++...-.+|++|+|+|||.+. +..++. .......+.++|+++|+..
T Consensus 42 ~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~---~~~~~~-~~~~~~~~~~~lil~P~~~ 100 (400)
T 1s2m_A 42 EKPSPIQEEAIPVAITGRDILARAKNGTGKTAAF---VIPTLE-KVKPKLNKIQALIMVPTRE 100 (400)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHH---HHHHHH-HCCTTSCSCCEEEECSSHH
T ss_pred CCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHH---HHHHHH-HHhhccCCccEEEEcCCHH
Confidence 4689999999999998877999999999999873 112221 1111113468999999975
No 26
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.50 E-value=5.7e-05 Score=68.21 Aligned_cols=59 Identities=8% Similarity=-0.015 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHhC--CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQR--PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~--~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..+++.|++|+..++.. .-.+|++|.|+|||.+. +..++. .......+.++|+.+|+..
T Consensus 26 ~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~---~~~~~~-~~~~~~~~~~~lil~P~~~ 86 (395)
T 3pey_A 26 QKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAF---SLTMLT-RVNPEDASPQAICLAPSRE 86 (395)
T ss_dssp CSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHH---HHHHHH-HCCTTCCSCCEEEECSSHH
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHH---HHHHHH-HhccCCCCccEEEECCCHH
Confidence 46899999999999986 78899999999999883 112221 1111113568999999986
No 27
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.46 E-value=7.6e-05 Score=63.70 Aligned_cols=59 Identities=8% Similarity=-0.107 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..+++.|++|+..++...-.+|++|.|+|||.+. ...++. .......+.++|+.+|+..
T Consensus 45 ~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~---~l~~l~-~l~~~~~~~~~lil~Pt~~ 103 (230)
T 2oxc_A 45 ERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF---STIALD-SLVLENLSTQILILAPTRE 103 (230)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH---HHHHHH-HCCTTSCSCCEEEECSSHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH---HHHHHH-HHHhcCCCceEEEEeCCHH
Confidence 4588999999999998877899999999999872 112221 1111223578999999975
No 28
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.42 E-value=9.6e-05 Score=62.69 Aligned_cols=58 Identities=10% Similarity=-0.118 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhh-------hccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTN-------RLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~-------~~~~~kiLvcAPSN~ 194 (266)
..+++.|++|+..++...-.+|++|.|+|||.+. +..++. .+. ...+.++|+.+|+..
T Consensus 41 ~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~---~l~~~~--~l~~~~~~~~~~~~~~~lil~Pt~~ 105 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSY---LMPGFI--HLDSQPISREQRNGPGMLVLTPTRE 105 (228)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH---HHHHHH--HHC---------CCCSEEEECSSHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHH---HHHHHH--HHHhccchhhccCCCcEEEEeCCHH
Confidence 3588999999999998878899999999999872 111121 111 114578999999986
No 29
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.42 E-value=8.4e-05 Score=63.77 Aligned_cols=58 Identities=12% Similarity=-0.006 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhh--ccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNR--LRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~--~~~~kiLvcAPSN~ 194 (266)
..+++.|++|+..++...-.++++|.|+|||.+. ...++. .+.. ..+.++++.+|+..
T Consensus 50 ~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~---~l~~l~--~l~~~~~~~~~~lil~Pt~~ 109 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAF---SIPILM--QLKQPANKGFRALIISPTRE 109 (245)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH---HHHHHH--HHCSCCSSSCCEEEECSSHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH---HHHHHH--HHhhcccCCceEEEEeCCHH
Confidence 4688999999999998877899999999999872 112221 1111 13568999999986
No 30
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=97.41 E-value=0.00011 Score=65.04 Aligned_cols=53 Identities=9% Similarity=0.032 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..|.+.|++|+..+++..-.+|++|+|+|||.+. . + ..+. .+.++|+.+|+..
T Consensus 15 ~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~----~--~--~~~~--~~~~~liv~P~~~ 67 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAY----A--I--PILE--LGMKSLVVTPTRE 67 (337)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH----H--H--HHHH--HTCCEEEECSSHH
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHH----H--H--HHHh--hcCCEEEEeCCHH
Confidence 4688999999999998888999999999999872 1 1 1122 3679999999976
No 31
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.39 E-value=0.00018 Score=62.00 Aligned_cols=60 Identities=10% Similarity=-0.071 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhh----------ccCCceEecCCCCc
Q psy4476 130 NLPDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNR----------LRNKSNLNHRPSGA 194 (266)
Q Consensus 130 ~~~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~----------~~~~kiLvcAPSN~ 194 (266)
....+.+.|.+|+..++...-.+|++|.|+|||.+. +..++. .+.. ..+.++|+.+|+..
T Consensus 42 g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~---~~~~l~--~l~~~~~~~~~~~~~~~~~~lil~Pt~~ 111 (253)
T 1wrb_A 42 SYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAF---LIPIIN--HLVCQDLNQQRYSKTAYPKCLILAPTRE 111 (253)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH---HHHHHH--HHHTTCC------CCBCCSEEEECSSHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHH---HHHHHH--HHHhhccccccccccCCceEEEEECCHH
Confidence 345789999999999999888899999999999873 112221 1111 12358999999976
No 32
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.38 E-value=8.3e-05 Score=65.14 Aligned_cols=58 Identities=9% Similarity=-0.001 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhh-----ccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNR-----LRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~-----~~~~kiLvcAPSN~ 194 (266)
..+++.|.+|+..++...-.+|++|.|+|||.+. +..++. .+.+ ..+.++++.+|+..
T Consensus 75 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~---~l~~l~--~l~~~~~~~~~~~~~lil~Pt~~ 137 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF---LIPAVE--LIVKLRFMPRNGTGVLILSPTRE 137 (262)
T ss_dssp CBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHH---HHHHHH--HHHHTTCCGGGCCCEEEECSSHH
T ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHH---HHHHHH--HHHhccccccCCceEEEEeCCHH
Confidence 4588999999999998877899999999999883 112221 1111 24678999999986
No 33
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.34 E-value=0.00011 Score=66.85 Aligned_cols=59 Identities=8% Similarity=-0.012 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHhC--CCeEEEcCCCCCcceEeCccccccccchhhh-hccCCceEecCCCCc
Q psy4476 131 LPDLNRSQVYAVKHAIQR--PLSLIQGMNQRSNGLHHQPGGAGIGNSANTN-RLRNKSNLNHRPSGA 194 (266)
Q Consensus 131 ~~~LN~sQ~~AV~~aL~~--~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~-~~~~~kiLvcAPSN~ 194 (266)
...+++.|++|+..++.. .-.+|++|.|+|||.+. +..++. .+. .....++|+.+|+..
T Consensus 45 ~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~---~~~~~~--~~~~~~~~~~~lil~P~~~ 106 (412)
T 3fht_A 45 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF---VLAMLS--QVEPANKYPQCLCLSPTYE 106 (412)
T ss_dssp CCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHH---HHHHHH--HCCTTSCSCCEEEECSSHH
T ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHH---HHHHHH--HhhhcCCCCCEEEECCCHH
Confidence 356899999999999986 78899999999999883 122231 122 123458999999986
No 34
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=97.34 E-value=0.00011 Score=67.13 Aligned_cols=59 Identities=14% Similarity=0.031 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..+.+.|++|+..++...-.+|++|.|+|||.+. ...++. .......+.++|+.+|+..
T Consensus 61 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~---~~~~~~-~~~~~~~~~~~lil~P~~~ 119 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATF---AISILQ-QIELDLKATQALVLAPTRE 119 (414)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHH---HHHHHH-HCCTTSCSCCEEEECSSHH
T ss_pred CCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHH---HHHHHH-HHhhcCCceeEEEEeChHH
Confidence 4588999999999998877899999999999883 122221 1111124578999999986
No 35
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.34 E-value=0.00012 Score=67.12 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhh-hccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTN-RLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~-~~~~~kiLvcAPSN~ 194 (266)
..+.+.|++|+..++...-.+|++|.|+|||.+. +..++. .+. ...+.++|+.+|+..
T Consensus 58 ~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~---~~~~~~--~l~~~~~~~~~lil~Pt~~ 116 (410)
T 2j0s_A 58 EKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATF---SISVLQ--CLDIQVRETQALILAPTRE 116 (410)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH---HHHHHH--TCCTTSCSCCEEEECSSHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHH---HHHHHH--HHhhccCCceEEEEcCcHH
Confidence 3578999999999998877999999999999883 222221 111 124578999999975
No 36
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=97.32 E-value=0.0001 Score=66.80 Aligned_cols=58 Identities=12% Similarity=-0.107 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhh-ccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNR-LRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~-~~~~kiLvcAPSN~ 194 (266)
..+.+.|++|+..++...-.+|.+|+|+|||.+. +..++ ..+.. ..+.++|+.+|+..
T Consensus 29 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~---~~~~~--~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 29 EHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVF---VLATL--QQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp CSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHH---HHHHH--HHCCCCTTCCCEEEECSCHH
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHH---HHHHH--HhhcccCCCeeEEEECCCHH
Confidence 4588999999999998888999999999999873 11222 11111 13468999999975
No 37
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.32 E-value=0.0001 Score=60.42 Aligned_cols=35 Identities=14% Similarity=-0.153 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHh---------CCCeEEEcCCCCCcceEeCccccccc
Q psy4476 135 NRSQVYAVKHAIQ---------RPLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 135 N~sQ~~AV~~aL~---------~~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
++.|++|+..+.. ....+|.|||||||||. +.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL----~~~i~ 59 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHL----AVATL 59 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHH----HHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHH----HHHHH
Confidence 6789999988862 25679999999999999 55555
No 38
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=97.29 E-value=7.7e-05 Score=67.58 Aligned_cols=59 Identities=12% Similarity=0.016 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..|++.|++|+..++...-.+|++|+|+|||.+. +..++. .......+.++|+.+|+..
T Consensus 42 ~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~---~~~~~~-~l~~~~~~~~~lil~P~~~ 100 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF---SIAALQ-RIDTSVKAPQALMLAPTRE 100 (394)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHH---HHHHHH-HCCTTCCSCCEEEECSSHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHH---HHHHHH-HhhccCCCCCEEEEcCCHH
Confidence 4688999999999999888899999999999873 112221 1111224568999999975
No 39
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.24 E-value=0.00022 Score=61.23 Aligned_cols=59 Identities=12% Similarity=-0.092 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhh------hccCCceEecCCCCc
Q psy4476 131 LPDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTN------RLRNKSNLNHRPSGA 194 (266)
Q Consensus 131 ~~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~------~~~~~kiLvcAPSN~ 194 (266)
+..+++.|++|+..++...-.+|++|.|+|||.+. +..++. .+. +..+.++|+.+|+..
T Consensus 49 ~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~---~l~~l~--~l~~~~~~~~~~~~~~lil~Pt~~ 113 (242)
T 3fe2_A 49 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY---LLPAIV--HINHQPFLERGDGPICLVLAPTRE 113 (242)
T ss_dssp CCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHH---HHHHHH--HHHTSCCCCTTCCCSEEEECSSHH
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHH---HHHHHH--HHHhccccccCCCCEEEEEeCcHH
Confidence 45689999999999999888999999999999883 111221 111 123567999999987
No 40
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=97.23 E-value=0.00011 Score=69.74 Aligned_cols=57 Identities=14% Similarity=-0.021 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..|.+.|.+||..++...-.||.||.|+|||.+. ..++. ..+ .....++|+.+|+..
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~----~~~~~-~~~-~~~~~~vlvl~P~~~ 168 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQ----ALLAR-YYL-ENYEGKILIIVPTTA 168 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHH----HHHHH-HHH-HHCSSEEEEEESSHH
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHH----HHHHH-HHH-hCCCCeEEEEECcHH
Confidence 3799999999999998777899999999999993 22221 112 123449999999975
No 41
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.19 E-value=0.00015 Score=70.38 Aligned_cols=58 Identities=17% Similarity=0.004 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHh-----CCCeEEEcCCCCCcceEeCccccccccchhhhhc-------cCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQ-----RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRL-------RNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~-----~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~-------~~~kiLvcAPSN~ 194 (266)
..|.+.|.+||..++. ++-.+|.+|.|+|||.+. ..++. ..+... ...++|+.+|+..
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~----~~~~~-~l~~~~~~~~~~~~~~~vlil~P~~~ 246 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA----FQISW-KLWSARWNRTGDYRKPRILFLADRNV 246 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH----HHHHH-HHHHTTCCSSCSSSCCCEEEEEC---
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH----HHHHH-HHHhcccccccccCCCeEEEEeCCHH
Confidence 4799999999999886 355799999999999993 33332 122221 4579999999876
No 42
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=97.11 E-value=8.6e-05 Score=74.09 Aligned_cols=90 Identities=13% Similarity=0.149 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHh--CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc--ccccccccccCccc
Q psy4476 133 DLNRSQVYAVKHAIQ--RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA--NKLSQGHLSQGNNS 208 (266)
Q Consensus 133 ~LN~sQ~~AV~~aL~--~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~--arl~~g~~~~g~~~ 208 (266)
.+...|.+|+...+. ..+.+|+|++|+|||+.+ -.++ ..+ ..+++|||||.. +.|.+ ..|.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~l----G~~~--a~~----~~~~~vtAP~~~a~~~l~~---~~~~-- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALA----GQLI--SRI----AGRAIVTAPAKASTDVLAQ---FAGE-- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHH----HHHH--HHS----SSCEEEECSSCCSCHHHHH---HHGG--
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHH----HHHH--HHH----HhCcEEECCCHHHHHHHHH---HhhC--
Confidence 578899999998886 567899999999999872 2122 111 236899999988 46666 2221
Q ss_pred ccccccccccccCCCCcccCCCCCCcceeee---eeccccc
Q psy4476 209 QEITQPYSQVMSQGGGFSLSQADLSQDSLMM---SQLDGML 246 (266)
Q Consensus 209 ~~i~~~~~~~~~~~g~~~~~~~~~~~d~~~~---s~~d~~l 246 (266)
+ ++| +-|+. +. .....+|+||| +||+..+
T Consensus 240 -~---i~~-~~Pd~--~~--~~~~~~dlliVDEAAaIp~pl 271 (671)
T 2zpa_A 240 -K---FRF-IAPDA--LL--ASDEQADWLVVDEAAAIPAPL 271 (671)
T ss_dssp -G---CCB-CCHHH--HH--HSCCCCSEEEEETGGGSCHHH
T ss_pred -C---eEE-eCchh--hh--hCcccCCEEEEEchhcCCHHH
Confidence 1 222 11221 10 13345999998 7777654
No 43
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=97.04 E-value=0.00031 Score=62.96 Aligned_cols=60 Identities=8% Similarity=-0.039 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHhC--CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 131 LPDLNRSQVYAVKHAIQR--PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 131 ~~~LN~sQ~~AV~~aL~~--~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
+..+++.|.+|+..++.. .-.++++|.|||||.+- +..++. .........++|+.+|+..
T Consensus 112 ~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~---~lp~l~-~l~~~~~~~~~lil~Ptre 173 (300)
T 3fmo_B 112 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF---VLAMLS-QVEPANKYPQCLCLSPTYE 173 (300)
T ss_dssp CCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH---HHHHHH-HCCTTSCSCCEEEECSSHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH---HHHHHH-hhhccCCCceEEEEcCcHH
Confidence 456889999999999986 67899999999999872 122332 1111223457999999987
No 44
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=97.03 E-value=0.00041 Score=63.46 Aligned_cols=33 Identities=6% Similarity=-0.112 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceE
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtT 164 (266)
..+++.|++|+..++...-.+|++|.|+|||.+
T Consensus 36 ~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~ 68 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA 68 (417)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred CCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHH
Confidence 468899999999999888889999999999986
No 45
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=96.98 E-value=0.00033 Score=64.18 Aligned_cols=56 Identities=13% Similarity=-0.089 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..|.+.|++|+..++.. -.+|..|+|+|||.+. ..++. ..+. ..+.++|+.+|+..
T Consensus 8 ~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~----~~~~~-~~~~-~~~~~~liv~P~~~ 63 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIA----MMIAE-YRLT-KYGGKVLMLAPTKP 63 (494)
T ss_dssp HCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHH----HHHHH-HHHH-HSCSCEEEECSSHH
T ss_pred CCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHH----HHHHH-HHHh-cCCCeEEEEECCHH
Confidence 36889999999999988 7899999999999983 22221 1122 25679999999965
No 46
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.95 E-value=0.0003 Score=58.48 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHH---h-C------CCeEEEcCCCCCcceEeCccccccc
Q psy4476 135 NRSQVYAVKHAI---Q-R------PLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 135 N~sQ~~AV~~aL---~-~------~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
++.|.+|+..+. . . ...+|+||||||||+. +.+|.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~l----a~~i~ 75 (202)
T 2w58_A 31 DDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYL----LAAIA 75 (202)
T ss_dssp SHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHH----HHHHH
T ss_pred ChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHH----HHHHH
Confidence 446666665443 2 2 4578999999999999 55555
No 47
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=96.93 E-value=0.0005 Score=64.98 Aligned_cols=57 Identities=5% Similarity=-0.142 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhcc---CCceEecCCCCc
Q psy4476 133 DLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLR---NKSNLNHRPSGA 194 (266)
Q Consensus 133 ~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~---~~kiLvcAPSN~ 194 (266)
.|.+.|.+|+..++...-.+|.+|.|+|||.+. +..++ ..+.+.. +.++|+.+|+..
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~---~~~~~--~~~~~~~~~~~~~~lil~P~~~ 63 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVS---LLICE--HHLKKFPCGQKGKVVFFANQIP 63 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH---HHHHH--HHHHTCCSSCCCCEEEECSSHH
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHH---HHHHH--HHHHhcccCCCCEEEEEeCCHH
Confidence 578999999999998888999999999999883 12222 1222212 678999999965
No 48
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.93 E-value=0.00037 Score=65.69 Aligned_cols=59 Identities=8% Similarity=-0.013 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHhC--CCeEEEcCCCCCcceEeCccccccccchhhhh-ccCCceEecCCCCc
Q psy4476 131 LPDLNRSQVYAVKHAIQR--PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNR-LRNKSNLNHRPSGA 194 (266)
Q Consensus 131 ~~~LN~sQ~~AV~~aL~~--~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~-~~~~kiLvcAPSN~ 194 (266)
+..+++.|.+|+..++.. .-.++++|.|+|||.+. +..|+. .+.. ....++|+.+|+-.
T Consensus 112 ~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~---~l~il~--~l~~~~~~~~~lil~Pt~~ 173 (479)
T 3fmp_B 112 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF---VLAMLS--QVEPANKYPQCLCLSPTYE 173 (479)
T ss_dssp CCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH---HHHHHT--TCCTTSCSCCEEEECSSHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH---HHHHHH--HHhhcCCCCcEEEEeChHH
Confidence 346778899999999986 77899999999999883 122231 1221 12348999999986
No 49
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.92 E-value=0.0006 Score=64.04 Aligned_cols=53 Identities=15% Similarity=-0.052 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..|.+.|++|+..++...-.+|.+|.|+|||.+. ..++ .. .+.++|+.+|+..
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~----l~~i-----~~-~~~~~Lvl~P~~~ 144 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVA----MAAI-----NE-LSTPTLIVVPTLA 144 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHH----HHHH-----HH-HCSCEEEEESSHH
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHH----HHHH-----HH-cCCCEEEEECCHH
Confidence 4799999999999988777999999999999982 2222 12 2579999999954
No 50
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=96.90 E-value=0.0003 Score=64.92 Aligned_cols=55 Identities=13% Similarity=-0.100 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 133 DLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 133 ~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
.+++.|++|+..++...-.+|++|.|+|||... +..++ .. . ..+.++|+.+|+-.
T Consensus 21 ~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~---l~~~~--~~-~-~~~~~~lil~Pt~~ 75 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFG---MMTAL--WL-A-RKGKKSALVFPTVT 75 (414)
T ss_dssp CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHH---HHHHH--HH-H-TTTCCEEEEESSHH
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHH---HHHHH--HH-h-cCCCEEEEEECCHH
Confidence 467999999999998888899999999999962 12222 11 1 25679999999976
No 51
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.90 E-value=0.00033 Score=69.67 Aligned_cols=58 Identities=21% Similarity=0.174 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHH-HhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 131 LPDLNRSQVYAVKHA-IQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 131 ~~~LN~sQ~~AV~~a-L~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
+..|++.|.+|+..+ +.+.-.+|+||+|+|||+.. ...++. .+.. .+.++++.+|+-+
T Consensus 28 ~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~---~l~il~--~~~~-~~~~il~i~P~r~ 86 (715)
T 2va8_A 28 IKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIA---EMGIIS--FLLK-NGGKAIYVTPLRA 86 (715)
T ss_dssp CCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHH---HHHHHH--HHHH-SCSEEEEECSCHH
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHH---HHHHHH--HHHH-CCCeEEEEeCcHH
Confidence 357999999999984 56788999999999999993 122331 2222 4679999999986
No 52
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=96.89 E-value=0.00054 Score=64.96 Aligned_cols=58 Identities=9% Similarity=-0.075 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhcc---CCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLR---NKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~---~~kiLvcAPSN~ 194 (266)
..|.+.|.+|+..++...-.+|.+|.|+|||.+. +..|+ ..+.... +.++|+.+|+..
T Consensus 6 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~---~~~~~--~~~~~~~~~~~~~~lil~P~~~ 66 (556)
T 4a2p_A 6 KKARSYQIELAQPAINGKNALICAPTGSGKTFVS---ILICE--HHFQNMPAGRKAKVVFLATKVP 66 (556)
T ss_dssp --CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH---HHHHH--HHHHTCCSSCCCCEEEECSSHH
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHH---HHHHH--HHHHhCcccCCCeEEEEeCCHH
Confidence 3688999999999998877999999999999883 12222 1222212 678999999975
No 53
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.89 E-value=0.0003 Score=60.39 Aligned_cols=57 Identities=7% Similarity=0.026 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhh--ccCCceEecCCCCc
Q psy4476 134 LNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNR--LRNKSNLNHRPSGA 194 (266)
Q Consensus 134 LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~--~~~~kiLvcAPSN~ 194 (266)
+.+.|.+|+..+......+|.||.|+|||+.+ ..++....... ....++++.+|+-.
T Consensus 62 ~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~----~~~~~~~~~~~~~~~~~~~l~~~p~~~ 120 (235)
T 3llm_A 62 VKKFESEILEAISQNSVVIIRGATGCGKTTQV----PQFILDDFIQNDRAAECNIVVTQPRRI 120 (235)
T ss_dssp GGGGHHHHHHHHHHCSEEEEECCTTSSHHHHH----HHHHHHHHHHTTCGGGCEEEEEESSHH
T ss_pred hHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhH----HHHHhcchhhcCCCCceEEEEeccchH
Confidence 55789999999999999999999999999973 22221011111 11347899999865
No 54
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.00019 Score=65.57 Aligned_cols=33 Identities=9% Similarity=-0.032 Sum_probs=22.7
Q ss_pred HHHHHHHHHH----hC---CCeEEEcCCCCCcceEeCccccccc
Q psy4476 137 SQVYAVKHAI----QR---PLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 137 sQ~~AV~~aL----~~---~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
.|...+..+| .. +..+|.||||||||++ +..++
T Consensus 27 ~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~----v~~v~ 66 (318)
T 3te6_A 27 EDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQL----VNDVM 66 (318)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHH----HHHHH
Confidence 4555555444 32 4578999999999999 55555
No 55
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=96.80 E-value=0.00017 Score=69.21 Aligned_cols=58 Identities=9% Similarity=0.028 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHhC--CCeEEEcCCCCCcceEeCccccccccchhhhh-ccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQR--PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNR-LRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~--~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~-~~~~kiLvcAPSN~ 194 (266)
..+++.|++|+..++.. .-.+|++|.|+|||.+. ...|+. .+.. ..+.++|+.+|+..
T Consensus 140 ~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~---~~~il~--~l~~~~~~~~vLvl~P~~~ 200 (508)
T 3fho_A 140 XXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAF---ALTMLS--RVDASVPKPQAICLAPSRE 200 (508)
T ss_dssp EECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHH---HHHHHH--HSCTTCCSCCEEEECSCHH
T ss_pred cCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHH---HHHHHH--HHHhCCCCceEEEEECcHH
Confidence 46889999999999986 78999999999999883 122231 2222 12458999999996
No 56
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.74 E-value=0.00045 Score=55.39 Aligned_cols=29 Identities=10% Similarity=0.098 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhC---CCeEEEcCCCCCcceE
Q psy4476 136 RSQVYAVKHAIQR---PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 136 ~sQ~~AV~~aL~~---~~tLIqGPPGTGKTtT 164 (266)
+.+.+.+...+.. ...+|+||||||||+.
T Consensus 28 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 28 DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAI 59 (195)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSCHHHH
T ss_pred hHHHHHHHHHHhcCCCCceEEECCCCCCHHHH
Confidence 4566777777753 4579999999999999
No 57
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.72 E-value=0.00047 Score=54.75 Aligned_cols=16 Identities=6% Similarity=-0.035 Sum_probs=14.3
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.-.+|+||||||||+.
T Consensus 28 ~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 28 SPVFLTGEAGSPFETV 43 (143)
T ss_dssp SCEEEEEETTCCHHHH
T ss_pred CcEEEECCCCccHHHH
Confidence 4578999999999998
No 58
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.72 E-value=0.00058 Score=54.28 Aligned_cols=16 Identities=6% Similarity=-0.124 Sum_probs=14.3
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.-.+|+||||||||+.
T Consensus 25 ~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTG 40 (145)
T ss_dssp SCEEEESSTTSSHHHH
T ss_pred CCEEEECCCCCCHHHH
Confidence 4569999999999999
No 59
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.70 E-value=0.00079 Score=56.45 Aligned_cols=36 Identities=14% Similarity=-0.060 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHhC---CCeEEEcCCCCCcceEeCccccccc
Q psy4476 134 LNRSQVYAVKHAIQR---PLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 134 LN~sQ~~AV~~aL~~---~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
.|....+++...+.. +..+|+||||||||+. +.++.
T Consensus 35 ~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l----a~~l~ 73 (242)
T 3bos_A 35 GNDELIGALKSAASGDGVQAIYLWGPVKSGRTHL----IHAAC 73 (242)
T ss_dssp CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHH----HHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHH----HHHHH
Confidence 456666666666643 5679999999999999 55554
No 60
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.64 E-value=0.0007 Score=55.58 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHhC---CCeEEEcCCCCCcceE
Q psy4476 135 NRSQVYAVKHAIQR---PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 135 N~sQ~~AV~~aL~~---~~tLIqGPPGTGKTtT 164 (266)
.+...+++...+.+ +..+|+||||||||++
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHH
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHH
Confidence 35677778777764 3589999999999999
No 61
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.00038 Score=66.05 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHh----C-------CC-----eEEEcCCCCCcceE
Q psy4476 136 RSQVYAVKHAIQ----R-------PL-----SLIQGMNQRSNGLH 164 (266)
Q Consensus 136 ~sQ~~AV~~aL~----~-------~~-----tLIqGPPGTGKTtT 164 (266)
+.|++.++.++. + .+ .|++||||||||++
T Consensus 178 ~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 178 DMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHH
Confidence 568888877653 1 11 69999999999999
No 62
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=96.59 E-value=0.0014 Score=61.30 Aligned_cols=59 Identities=7% Similarity=-0.144 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhh-----ccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNR-----LRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~-----~~~~kiLvcAPSN~ 194 (266)
..+++.|++|+..++...-.++++|.|+|||... +..++. ..... ..+.++|+.+|+-.
T Consensus 77 ~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~---~lpil~-~l~~~~~~~~~~~~~~lil~Ptre 140 (434)
T 2db3_A 77 KIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAF---LLPILS-KLLEDPHELELGRPQVVIVSPTRE 140 (434)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH---HHHHHH-HHHHSCCCCCTTCCSEEEECSSHH
T ss_pred CCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHH---HHHHHH-HHHhcccccccCCccEEEEecCHH
Confidence 4678999999999999888999999999999873 122221 11111 12468999999975
No 63
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.57 E-value=0.00065 Score=59.61 Aligned_cols=16 Identities=13% Similarity=-0.081 Sum_probs=14.4
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.-.||+||||||||++
T Consensus 51 ~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4578999999999999
No 64
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.53 E-value=0.00055 Score=54.98 Aligned_cols=29 Identities=7% Similarity=0.078 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhC---CCeEEEcCCCCCcceE
Q psy4476 136 RSQVYAVKHAIQR---PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 136 ~sQ~~AV~~aL~~---~~tLIqGPPGTGKTtT 164 (266)
+.+.+++...+.+ ...+|+||||||||++
T Consensus 28 ~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 28 DTEIRRAIQILSRRTKNNPILLGDPGVGKTAI 59 (187)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEESCGGGCHHHH
T ss_pred hHHHHHHHHHHhCCCCCceEEECCCCCCHHHH
Confidence 4456666666643 4569999999999999
No 65
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.53 E-value=0.00058 Score=59.68 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHh---------------C-CCeEEEcCCCCCcceE
Q psy4476 135 NRSQVYAVKHAIQ---------------R-PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 135 N~sQ~~AV~~aL~---------------~-~~tLIqGPPGTGKTtT 164 (266)
.+.+++++..++. . .-.||+||||||||++
T Consensus 22 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 22 LEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 4667777776652 1 2479999999999999
No 66
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=96.52 E-value=0.0012 Score=63.47 Aligned_cols=59 Identities=10% Similarity=0.029 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHH--hCCCeEEEcCCCCCcceEeCccccccccchhhhhc-----cCCceEecCCCCc
Q psy4476 131 LPDLNRSQVYAVKHAI--QRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRL-----RNKSNLNHRPSGA 194 (266)
Q Consensus 131 ~~~LN~sQ~~AV~~aL--~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~-----~~~kiLvcAPSN~ 194 (266)
+..+++.|++|+..++ ...-.++++|.|+|||.+- +..++. .+... ...++|+.+|+-.
T Consensus 92 ~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~---~lpil~--~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 92 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAF---LIPIFQ--HLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp CSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHH---HHHHHH--HHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHH---HHHHHH--HHHhccccccCCeeEEEEcCcHH
Confidence 3568999999999999 4467899999999999872 112221 12111 1348999999976
No 67
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.50 E-value=0.00063 Score=59.90 Aligned_cols=30 Identities=13% Similarity=0.043 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHh---------------CCCeEEEcCCCCCcceE
Q psy4476 135 NRSQVYAVKHAIQ---------------RPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 135 N~sQ~~AV~~aL~---------------~~~tLIqGPPGTGKTtT 164 (266)
.+.+++++..++. ..-.||+||||||||++
T Consensus 26 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 26 QDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHH
T ss_pred hHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHH
Confidence 4667777776652 23578999999999999
No 68
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=96.50 E-value=0.0012 Score=64.01 Aligned_cols=58 Identities=10% Similarity=0.016 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHH--hCCCeEEEcCCCCCcceEeCccccccccchhhhh-----ccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAI--QRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNR-----LRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL--~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~-----~~~~kiLvcAPSN~ 194 (266)
..+.+.|++|+..++ ...-.++++|.|+|||.+. +..++. .+.. ....++|+.+|+-.
T Consensus 42 ~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~---~lpil~--~l~~~~~~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAF---LIPIFQ--HLINTKFDSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHH---HHHHHH--HHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHH---HHHHHH--HHHhccccccCCCeEEEEcchHH
Confidence 468899999999999 4567899999999999872 111221 1111 11358999999976
No 69
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=96.43 E-value=0.0021 Score=63.16 Aligned_cols=59 Identities=5% Similarity=-0.146 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhcc---CCceEecCCCCc
Q psy4476 131 LPDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLR---NKSNLNHRPSGA 194 (266)
Q Consensus 131 ~~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~---~~kiLvcAPSN~ 194 (266)
...|.+.|.+|+..++...-.+|.+|.|+|||... +..++ ..+.... +.++|+.+|+-.
T Consensus 11 ~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~---~~~i~--~~l~~~~~~~~~~~lvl~Pt~~ 72 (696)
T 2ykg_A 11 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVS---LLICE--HHLKKFPQGQKGKVVFFANQIP 72 (696)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH---HHHHH--HHHHHSCTTCCCCEEEECSSHH
T ss_pred CCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHH---HHHHH--HHHHhCccCCCCeEEEEECCHH
Confidence 35789999999999998888999999999999983 11122 1222211 268999999854
No 70
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.42 E-value=0.00094 Score=55.30 Aligned_cols=30 Identities=10% Similarity=0.066 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHhC----CCeEEEcCCCCCcceE
Q psy4476 135 NRSQVYAVKHAIQR----PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 135 N~sQ~~AV~~aL~~----~~tLIqGPPGTGKTtT 164 (266)
.+...+.+..++.. ...+|+||||||||++
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSI 61 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHH
Confidence 45677778777753 3679999999999999
No 71
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=96.41 E-value=0.00073 Score=66.54 Aligned_cols=58 Identities=9% Similarity=-0.064 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccC----CceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRN----KSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~----~kiLvcAPSN~ 194 (266)
..|.+.|.+|+..++...-.||.+|.|+|||.+. ..++. ..+.+... .++||.+|+-.
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~----~~~i~-~~l~~~~~~~~~~~vlvl~P~~~ 67 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVA----VYIAK-DHLDKKKKASEPGKVIVLVNKVL 67 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHH----HHHHH-HHHHHHHHHTCCCCBCCEESCSH
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHH----HHHHH-HHHHhccccCCCCeEEEEECCHH
Confidence 3688999999999999877999999999999983 22221 12222122 78999999974
No 72
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.41 E-value=0.001 Score=60.74 Aligned_cols=16 Identities=19% Similarity=0.131 Sum_probs=14.3
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.-.||+||||||||++
T Consensus 52 ~~vll~GppGtGKT~l 67 (363)
T 3hws_A 52 SNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3579999999999999
No 73
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=96.38 E-value=0.00065 Score=67.74 Aligned_cols=57 Identities=14% Similarity=0.058 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHH-HHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKH-AIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~-aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..|++.|.+|+.. .+...-.+|.||.|+|||++. ...++. .+.. .+.++++.+|+-+
T Consensus 22 ~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~---~l~il~--~~~~-~~~~~l~i~P~ra 79 (720)
T 2zj8_A 22 ESFYPPQAEALKSGILEGKNALISIPTASGKTLIA---EIAMVH--RILT-QGGKAVYIVPLKA 79 (720)
T ss_dssp CBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHH---HHHHHH--HHHH-HCSEEEEECSSGG
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHH---HHHHHH--HHHh-CCCEEEEEcCcHH
Confidence 4799999999998 556788999999999999883 122331 2221 3679999999976
No 74
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.34 E-value=0.0013 Score=58.91 Aligned_cols=21 Identities=14% Similarity=-0.012 Sum_probs=17.2
Q ss_pred CCeEEEcCCCCCcceEeCccccccc
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
+..+|+||||||||+. +.+|.
T Consensus 38 ~~lll~G~~GtGKT~l----a~~i~ 58 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHL----LQAAG 58 (324)
T ss_dssp SSEEEECSSSSSHHHH----HHHHH
T ss_pred CeEEEECCCCCcHHHH----HHHHH
Confidence 3689999999999999 55555
No 75
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=96.32 E-value=0.00045 Score=68.67 Aligned_cols=56 Identities=16% Similarity=0.076 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..|++.|.+|+...+...-.+|.||+|+|||+.. ...++. .+. .+.++++.+|+-+
T Consensus 24 ~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~---~l~il~--~~~--~~~~~l~i~P~r~ 79 (702)
T 2p6r_A 24 EELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLA---EMAMVR--EAI--KGGKSLYVVPLRA 79 (702)
T ss_dssp -CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHH---HHHHHH--HHH--TTCCEEEEESSHH
T ss_pred CCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHH---HHHHHH--HHH--hCCcEEEEeCcHH
Confidence 4688999999999778889999999999999983 122331 222 3679999999986
No 76
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=96.30 E-value=0.0022 Score=64.68 Aligned_cols=59 Identities=8% Similarity=-0.081 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhcc---CCceEecCCCCc
Q psy4476 131 LPDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLR---NKSNLNHRPSGA 194 (266)
Q Consensus 131 ~~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~---~~kiLvcAPSN~ 194 (266)
...|.+.|.+|+..++...-.+|.+|.|+|||.+. +..|+ ..+.+.. +.++|+.+|+..
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~---~~~i~--~~l~~~~~~~~~~~Lvl~Pt~~ 307 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVS---ILICE--HHFQNMPAGRKAKVVFLATKVP 307 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH---HHHHH--HHHHTCCSSCCCCEEEECSSHH
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHH---HHHHH--HHHHhccccCCCeEEEEeCCHH
Confidence 35789999999999998878999999999999883 22222 1222212 678999999985
No 77
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.30 E-value=0.00071 Score=58.31 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=16.5
Q ss_pred CeEEEcCCCCCcceEeCccccccc
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
-.||.||||||||+. +.+|+
T Consensus 60 ~ili~GPPGtGKTt~----a~ala 79 (212)
T 1tue_A 60 CLVFCGPANTGKSYF----GMSFI 79 (212)
T ss_dssp EEEEESCGGGCHHHH----HHHHH
T ss_pred EEEEECCCCCCHHHH----HHHHH
Confidence 578999999999999 44554
No 78
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=96.29 E-value=0.003 Score=65.73 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..|++.|.+||..++...-.+|.+|.|+|||.+. ...|. ...+ .+.++++.+|+-+
T Consensus 38 f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~---~~~i~---~~~~-~g~~vlvl~Ptra 93 (997)
T 4a4z_A 38 FELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVA---EYAIA---MAHR-NMTKTIYTSPIKA 93 (997)
T ss_dssp SCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHH---HHHHH---HHHH-TTCEEEEEESCGG
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHH---HHHHH---HHHh-cCCeEEEEeCCHH
Confidence 3689999999999999888999999999999872 11222 1222 4678999999987
No 79
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.29 E-value=0.00046 Score=59.85 Aligned_cols=15 Identities=20% Similarity=0.096 Sum_probs=13.6
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
-.||+||||||||++
T Consensus 46 ~vll~G~~GtGKT~l 60 (268)
T 2r62_A 46 GVLLVGPPGTGKTLL 60 (268)
T ss_dssp CCCCBCSSCSSHHHH
T ss_pred eEEEECCCCCcHHHH
Confidence 368999999999999
No 80
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.28 E-value=0.0012 Score=59.81 Aligned_cols=29 Identities=10% Similarity=0.024 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhC--------CCeEEEcCCCCCcceE
Q psy4476 136 RSQVYAVKHAIQR--------PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 136 ~sQ~~AV~~aL~~--------~~tLIqGPPGTGKTtT 164 (266)
+...+++..++.. +..+|.|||||||||+
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTL 67 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHH
Confidence 4566666666642 5789999999999999
No 81
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.26 E-value=0.00064 Score=60.63 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=13.6
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
..|++||||||||++
T Consensus 38 ~lLl~GppGtGKT~l 52 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQ 52 (293)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 468899999999999
No 82
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.24 E-value=0.00082 Score=59.31 Aligned_cols=15 Identities=7% Similarity=-0.115 Sum_probs=13.8
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
-.||+||||||||++
T Consensus 69 ~vll~G~~GtGKT~l 83 (309)
T 3syl_A 69 HMSFTGNPGTGKTTV 83 (309)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 369999999999999
No 83
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.22 E-value=0.0011 Score=59.56 Aligned_cols=30 Identities=17% Similarity=0.063 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHh---------------CCCeEEEcCCCCCcceE
Q psy4476 135 NRSQVYAVKHAIQ---------------RPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 135 N~sQ~~AV~~aL~---------------~~~tLIqGPPGTGKTtT 164 (266)
.+.++++++.++. ..-.||+||||||||++
T Consensus 23 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 23 LEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 4667777777661 12369999999999999
No 84
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.22 E-value=0.0016 Score=58.76 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHhC-CC--eEEEcCCCCCcceE
Q psy4476 135 NRSQVYAVKHAIQR-PL--SLIQGMNQRSNGLH 164 (266)
Q Consensus 135 N~sQ~~AV~~aL~~-~~--tLIqGPPGTGKTtT 164 (266)
++...+.+..++.+ .+ .++.|||||||||+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtl 62 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTST 62 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHH
Confidence 35556666677764 45 89999999999999
No 85
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.22 E-value=0.001 Score=53.59 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccc
Q psy4476 133 DLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 133 ~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
..|.....|++.. .....+|.||||+||||. +.+|.
T Consensus 22 g~n~~~~~~l~~~-~g~~~~l~G~~G~GKTtL----~~~i~ 57 (149)
T 2kjq_A 22 TENAELVYVLRHK-HGQFIYVWGEEGAGKSHL----LQAWV 57 (149)
T ss_dssp CCTHHHHHHCCCC-CCSEEEEESSSTTTTCHH----HHHHH
T ss_pred CccHHHHHHHHhc-CCCEEEEECCCCCCHHHH----HHHHH
Confidence 5677776666655 557889999999999999 55555
No 86
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.0024 Score=66.55 Aligned_cols=55 Identities=13% Similarity=0.064 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 133 DLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 133 ~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
.|++.|++|+..++...-.+|++|.|+|||.+. ...|+ ..+ ..+.++++.+|+-+
T Consensus 86 ~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva---~lai~--~~l--~~g~rvL~l~Ptka 140 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVA---EYAIA--QSL--KNKQRVIYTSPIKA 140 (1010)
T ss_dssp CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHH---HHHHH--HHH--HTTCEEEEEESSHH
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHH---HHHHH--HHh--ccCCeEEEECChHH
Confidence 599999999999998888999999999999982 11222 112 24679999999865
No 87
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.13 E-value=0.0013 Score=59.38 Aligned_cols=35 Identities=6% Similarity=-0.004 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHhC-------C--CeEEEcCCCCCcceEeCccccccc
Q psy4476 135 NRSQVYAVKHAIQR-------P--LSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 135 N~sQ~~AV~~aL~~-------~--~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
.+.+.+.+..++.. . ..+|.||||||||++ +..+.
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl----~~~l~ 65 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVT----LRKLW 65 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHH----HHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHH----HHHHH
Confidence 35566666666642 3 689999999999999 55544
No 88
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.11 E-value=0.0017 Score=58.17 Aligned_cols=30 Identities=13% Similarity=-0.029 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHhC--------CCeEEEcCCCCCcceE
Q psy4476 135 NRSQVYAVKHAIQR--------PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 135 N~sQ~~AV~~aL~~--------~~tLIqGPPGTGKTtT 164 (266)
.+...+++..++.. +..||+||||||||++
T Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 34 QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTL 71 (338)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHH
Confidence 35566666666531 3679999999999999
No 89
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.11 E-value=0.0023 Score=64.93 Aligned_cols=55 Identities=16% Similarity=0.045 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHhC------CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 133 DLNRSQVYAVKHAIQR------PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 133 ~LN~sQ~~AV~~aL~~------~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
.|++.|++|+..++.. .-.||+||.|+|||.+. ...++ ..+. .+.++++.+|+-.
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlva---ll~il--~~l~--~g~qvlvlaPtr~ 428 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVA---QLAIL--DNYE--AGFQTAFMVPTSI 428 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHH---HHHHH--HHHH--HTSCEEEECSCHH
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHH---HHHHH--HHHH--cCCeEEEEeCcHH
Confidence 7999999999998863 35799999999999983 22222 1121 4679999999975
No 90
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.00088 Score=63.62 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHH----hC------------CCeEEEcCCCCCcceE
Q psy4476 135 NRSQVYAVKHAI----QR------------PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 135 N~sQ~~AV~~aL----~~------------~~tLIqGPPGTGKTtT 164 (266)
-+.|++.++.++ .+ +=.|++||||||||.+
T Consensus 186 l~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 186 LDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp CHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHH
Confidence 367888887663 21 1258999999999999
No 91
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.10 E-value=0.0017 Score=62.40 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHhC--------------------CCeEEEcCCCCCcceE
Q psy4476 134 LNRSQVYAVKHAIQR--------------------PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 134 LN~sQ~~AV~~aL~~--------------------~~tLIqGPPGTGKTtT 164 (266)
-++.+.+.+...+.. +..||+||||||||++
T Consensus 43 G~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtl 93 (516)
T 1sxj_A 43 GNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTA 93 (516)
T ss_dssp SCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHH
T ss_pred CCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHH
Confidence 356677777777653 4679999999999999
No 92
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.09 E-value=0.0018 Score=57.72 Aligned_cols=15 Identities=20% Similarity=0.007 Sum_probs=13.8
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
..||+||||||||++
T Consensus 51 ~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLL 65 (301)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred eEEEECCCCcCHHHH
Confidence 479999999999999
No 93
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.08 E-value=0.00093 Score=57.34 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=13.3
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.||+||||||||++
T Consensus 42 vll~G~~GtGKT~l 55 (262)
T 2qz4_A 42 ALLLGPPGCGKTLL 55 (262)
T ss_dssp EEEESCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 58999999999999
No 94
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.0036 Score=65.80 Aligned_cols=56 Identities=13% Similarity=0.041 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..|++.|++|+..++...-.||.||.|+|||.+. ...|+ ..+ ..+.++++.+|+-+
T Consensus 183 f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva---~l~i~--~~l--~~g~rvlvl~Ptra 238 (1108)
T 3l9o_A 183 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVA---EYAIA--QSL--KNKQRVIYTSPIKA 238 (1108)
T ss_dssp SCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHH---HHHHH--HHH--HTTCEEEEEESSHH
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHH---HHHHH--HHH--hcCCeEEEEcCcHH
Confidence 4699999999999888888999999999999883 12222 112 24679999999976
No 95
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.05 E-value=0.0021 Score=56.97 Aligned_cols=29 Identities=7% Similarity=-0.035 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHh------C--CCeEEEcCCCCCcceE
Q psy4476 136 RSQVYAVKHAIQ------R--PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 136 ~sQ~~AV~~aL~------~--~~tLIqGPPGTGKTtT 164 (266)
+...+++..++. . ...+|+||||||||++
T Consensus 18 ~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHH
Confidence 455566655553 1 4679999999999999
No 96
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.04 E-value=0.0014 Score=57.73 Aligned_cols=15 Identities=13% Similarity=-0.095 Sum_probs=13.9
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
..+|+||||||||++
T Consensus 49 ~~ll~G~~GtGKt~l 63 (311)
T 4fcw_A 49 SFLFLGPTGVGKTEL 63 (311)
T ss_dssp EEEEESCSSSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 479999999999999
No 97
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=96.02 E-value=0.0046 Score=60.65 Aligned_cols=53 Identities=8% Similarity=-0.074 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..+.+.|++||..++...-.+|..|.|+|||.+- ++ -.+. ...++||.+|+-.
T Consensus 43 ~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~------~l--pal~--~~g~~lVisP~~~ 95 (591)
T 2v1x_A 43 EKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCY------QL--PALC--SDGFTLVICPLIS 95 (591)
T ss_dssp CSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHH------HH--HHHT--SSSEEEEECSCHH
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHH------HH--HHHH--cCCcEEEEeCHHH
Confidence 4577889999999999877999999999999872 11 1122 3468999999875
No 98
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=95.99 E-value=0.0031 Score=65.39 Aligned_cols=58 Identities=14% Similarity=0.021 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHhC--CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQR--PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~--~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..|.+.|++|+..++.+ .-.|+.+|.|+|||.+ ...++. ......+..++|+.+|+..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~----Ai~~i~-~l~~~g~~~rvLIVvP~sL 211 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIE----AGMILH-QQLLSGAAERVLIIVPETL 211 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHH----HHHHHH-HHHHTSSCCCEEEECCTTT
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHH----HHHHHH-HHHHhCCCCeEEEEeCHHH
Confidence 47899999999999975 4679999999999998 333342 2222223468999999954
No 99
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.99 E-value=0.0018 Score=57.02 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHhC---CCeEEEcCCCCCcceE
Q psy4476 135 NRSQVYAVKHAIQR---PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 135 N~sQ~~AV~~aL~~---~~tLIqGPPGTGKTtT 164 (266)
.+...+.+..++.. +..||+||||||||++
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l 62 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTA 62 (327)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHH
Confidence 46677777777753 2489999999999999
No 100
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=95.97 E-value=0.0042 Score=64.09 Aligned_cols=59 Identities=8% Similarity=-0.081 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhcc---CCceEecCCCCc
Q psy4476 131 LPDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLR---NKSNLNHRPSGA 194 (266)
Q Consensus 131 ~~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~---~~kiLvcAPSN~ 194 (266)
...|.+.|.+|+..++...-.+|.+|.|+|||.+. +..|+ ..+.+.. +.++||.+|+-.
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~---~~~i~--~~l~~~~~~~~~~vLvl~Pt~~ 307 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVS---ILICE--HHFQNMPAGRKAKVVFLATKVP 307 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH---HHHHH--TTTTTCCSSCCCCEEEECSSHH
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHH---HHHHH--HHHHhccccCCCeEEEEeCCHH
Confidence 35688999999999998888999999999999883 12222 1222212 678999999874
No 101
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.95 E-value=0.0015 Score=55.42 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=14.7
Q ss_pred CeEEEcCCCCCcceEe
Q psy4476 150 LSLIQGMNQRSNGLHH 165 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTi 165 (266)
+.||+||||||||+..
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 6899999999999984
No 102
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.94 E-value=0.0018 Score=58.58 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHh-------CCCeEEEcCCCCCcceEeCccccccc
Q psy4476 136 RSQVYAVKHAIQ-------RPLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 136 ~sQ~~AV~~aL~-------~~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
+.+.+.+..++. .+..+|+||||||||++ +..+.
T Consensus 26 ~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l----a~~l~ 66 (384)
T 2qby_B 26 EDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFV----SKYIF 66 (384)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHH----HHHHH
Confidence 556666665553 24589999999999999 44444
No 103
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.94 E-value=0.0014 Score=59.03 Aligned_cols=35 Identities=6% Similarity=0.096 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHh-------CCCeEEEcCCCCCcceEeCccccccc
Q psy4476 135 NRSQVYAVKHAIQ-------RPLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 135 N~sQ~~AV~~aL~-------~~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
.+.+.+.+...+. ....+|+||||||||++ +..+.
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l----~~~~~ 65 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAV----ARLVL 65 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHH----HHHHH
Confidence 4667777777662 24689999999999999 55554
No 104
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.0012 Score=62.79 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHh----C------------CCeEEEcCCCCCcceE
Q psy4476 136 RSQVYAVKHAIQ----R------------PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 136 ~sQ~~AV~~aL~----~------------~~tLIqGPPGTGKTtT 164 (266)
+.|++.++.++. + +=.|++||||||||.+
T Consensus 187 ~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 187 TEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHH
Confidence 568888876652 1 1268999999999999
No 105
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.90 E-value=0.0024 Score=57.71 Aligned_cols=15 Identities=20% Similarity=0.131 Sum_probs=14.1
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
..||.||||||||++
T Consensus 72 ~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAI 86 (368)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 579999999999999
No 106
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.0012 Score=62.09 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHh----C------------CCeEEEcCCCCCcceE
Q psy4476 133 DLNRSQVYAVKHAIQ----R------------PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 133 ~LN~sQ~~AV~~aL~----~------------~~tLIqGPPGTGKTtT 164 (266)
.| +.|++.++.++. + +=.|++||||||||.+
T Consensus 152 Gl-~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 152 GL-TKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp SC-HHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHH
T ss_pred CH-HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHH
Confidence 44 568887776641 1 1268999999999999
No 107
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.88 E-value=0.0026 Score=56.87 Aligned_cols=27 Identities=11% Similarity=-0.082 Sum_probs=19.4
Q ss_pred HHHHHHHHHh---CCCeEEEcCCCCCcceE
Q psy4476 138 QVYAVKHAIQ---RPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 138 Q~~AV~~aL~---~~~tLIqGPPGTGKTtT 164 (266)
-++++..++. ..-.||+||||||||++
T Consensus 32 ~~~~l~~~~~~~~~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 32 MKLALLLTAVDPGIGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp HHHHHHHHHHCGGGCCEEEECCGGGCTTHH
T ss_pred HHHHHHHHhhCCCCceEEEECCCCccHHHH
Confidence 4445544442 34589999999999999
No 108
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.85 E-value=0.0028 Score=58.00 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=14.5
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.-.||+||||||||++
T Consensus 73 ~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 73 SNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CCEEEECCCCCCHHHH
Confidence 4579999999999999
No 109
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.85 E-value=0.0021 Score=57.57 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHh-CCCeEEEcCCCCCcceE
Q psy4476 136 RSQVYAVKHAIQ-RPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 136 ~sQ~~AV~~aL~-~~~tLIqGPPGTGKTtT 164 (266)
+...+++..++. ..-.||.||||||||++
T Consensus 33 ~~~~~~l~~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 33 KYMINRLLIGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCcHHHH
Confidence 345566665554 56789999999999999
No 110
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.84 E-value=0.0018 Score=58.06 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHh-------CCCeEEEcCCCCCcceE
Q psy4476 136 RSQVYAVKHAIQ-------RPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 136 ~sQ~~AV~~aL~-------~~~tLIqGPPGTGKTtT 164 (266)
+.+.+.+..++. ....+|.||||||||++
T Consensus 26 ~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 26 EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp HHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHH
Confidence 567777777665 25789999999999999
No 111
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.83 E-value=0.0035 Score=56.41 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=23.9
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhh-hccCCceE-ecCC
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTN-RLRNKSNL-NHRP 191 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~-~~~~~kiL-vcAP 191 (266)
.-.+|+||||||||+. +.+|.+ .+. + .+.+++ +.+|
T Consensus 153 ~~lll~G~~GtGKT~L----a~aia~--~~~~~-~g~~v~~~~~~ 190 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYL----LAAMAH--ELSEK-KGVSTTLLHFP 190 (308)
T ss_dssp CEEEEECSTTSSHHHH----HHHHHH--HHHHH-SCCCEEEEEHH
T ss_pred ceEEEECCCCCCHHHH----HHHHHH--HHHHh-cCCcEEEEEHH
Confidence 4578999999999999 556653 333 3 345554 4444
No 112
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.79 E-value=0.0016 Score=58.28 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhC---CCeEEEcCCCCCcceEeCccccccc
Q psy4476 136 RSQVYAVKHAIQR---PLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 136 ~sQ~~AV~~aL~~---~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
+...+.+..++.. +-.+|.||||||||++ +.++.
T Consensus 43 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l----a~~la 79 (353)
T 1sxj_D 43 DHAVTVLKKTLKSANLPHMLFYGPPGTGKTST----ILALT 79 (353)
T ss_dssp CTTHHHHHHHTTCTTCCCEEEECSTTSSHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHH----HHHHH
Confidence 3456677777753 3489999999999999 45544
No 113
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.79 E-value=0.0015 Score=57.00 Aligned_cols=15 Identities=13% Similarity=0.151 Sum_probs=13.8
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
-.||+||||||||++
T Consensus 66 ~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 66 SVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 468999999999999
No 114
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.78 E-value=0.0024 Score=55.33 Aligned_cols=16 Identities=25% Similarity=0.171 Sum_probs=14.6
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
...+|+||||||||++
T Consensus 30 ~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 30 KPVLIIGERGTGKELI 45 (265)
T ss_dssp SCEEEECCTTSCHHHH
T ss_pred CCEEEECCCCCcHHHH
Confidence 5678999999999998
No 115
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.73 E-value=0.0017 Score=56.10 Aligned_cols=14 Identities=21% Similarity=0.199 Sum_probs=13.3
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|.||||||||++
T Consensus 48 vll~G~~GtGKT~l 61 (257)
T 1lv7_A 48 VLMVGPPGTGKTLL 61 (257)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECcCCCCHHHH
Confidence 68999999999999
No 116
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.70 E-value=0.0016 Score=58.80 Aligned_cols=15 Identities=13% Similarity=-0.002 Sum_probs=13.7
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
-.||+||||||||++
T Consensus 47 ~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 47 GILLFGPPGTGKSYL 61 (322)
T ss_dssp EEEEESSSSSCHHHH
T ss_pred eEEEECCCCccHHHH
Confidence 368999999999999
No 117
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.69 E-value=0.0021 Score=53.56 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=26.3
Q ss_pred CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCccccc
Q psy4476 148 RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGANKLS 198 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~arl~ 198 (266)
..+.+|.||||+||||. +..++. ... ..+.++++..|.--.|..
T Consensus 3 g~i~vi~G~~gsGKTT~----ll~~~~--~~~-~~g~~v~~~~~~~d~r~~ 46 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTE----LLSFVE--IYK-LGKKKVAVFKPKIDSRYH 46 (184)
T ss_dssp CCEEEEEESTTSSHHHH----HHHHHH--HHH-HTTCEEEEEEEC-----C
T ss_pred cEEEEEECCCCCCHHHH----HHHHHH--HHH-HCCCeEEEEeeccccccC
Confidence 35789999999999999 333332 122 245688887666333443
No 118
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=95.68 E-value=0.0052 Score=51.88 Aligned_cols=69 Identities=14% Similarity=0.078 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHh--CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCcc--cccccccccCcccccc
Q psy4476 136 RSQVYAVKHAIQ--RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGAN--KLSQGHLSQGNNSQEI 211 (266)
Q Consensus 136 ~sQ~~AV~~aL~--~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~a--rl~~g~~~~g~~~~~i 211 (266)
..|..|+...+. +++.+|+|+=|++||++. +++++. ..+..+.+|.+-||+..+ -|.+ +-+....|+
T Consensus 37 ~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~---~a~L~~---~a~~~Gr~V~vLAp~~~s~~~l~~---~~~l~~~t~ 107 (189)
T 2l8b_A 37 AGYSDAVSVLAQDRPSLAIVSGQGGAAGQRER---VAELVM---MAREQGREVQIIAADRRSQMNMKQ---DERLSGELI 107 (189)
T ss_dssp HHHHHHHHHHHHHSCCEECCBCSSCSHHHHHH---HHHHHH---HHHHTTCCEEEECSTTHHHHHHSC---TTTCSSCSS
T ss_pred ccchhHHHHHhccCCceEEEecccchHHHHHH---HHHHHH---HHHhcCeEEEEEcCchHHHHHHHh---hcCcCccee
Confidence 779999999986 479999999999999996 455552 334468899999999984 4445 445566666
Q ss_pred cc
Q psy4476 212 TQ 213 (266)
Q Consensus 212 ~~ 213 (266)
.|
T Consensus 108 t~ 109 (189)
T 2l8b_A 108 TG 109 (189)
T ss_dssp ST
T ss_pred eh
Confidence 54
No 119
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.68 E-value=0.003 Score=57.78 Aligned_cols=30 Identities=13% Similarity=0.001 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHh---------------CCCeEEEcCCCCCcceE
Q psy4476 135 NRSQVYAVKHAIQ---------------RPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 135 N~sQ~~AV~~aL~---------------~~~tLIqGPPGTGKTtT 164 (266)
.+.+++++..++. ..-.||+||||||||++
T Consensus 89 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 89 VEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHH
T ss_pred hHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHH
Confidence 3567777766652 13468999999999999
No 120
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.64 E-value=0.0031 Score=56.19 Aligned_cols=31 Identities=10% Similarity=-0.051 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHhC----CCeEEEcCCCCCcceE
Q psy4476 134 LNRSQVYAVKHAIQR----PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 134 LN~sQ~~AV~~aL~~----~~tLIqGPPGTGKTtT 164 (266)
-++...+.++.++.+ .+.|+.||||||||++
T Consensus 30 g~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~l 64 (324)
T 3u61_B 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTV 64 (324)
T ss_dssp CCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHH
Confidence 456778888888863 3457788899999999
No 121
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.64 E-value=0.0029 Score=58.36 Aligned_cols=30 Identities=10% Similarity=0.014 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHh---------------CCCeEEEcCCCCCcceE
Q psy4476 135 NRSQVYAVKHAIQ---------------RPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 135 N~sQ~~AV~~aL~---------------~~~tLIqGPPGTGKTtT 164 (266)
.+.+++++..++. ..-.||+||||||||++
T Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 120 QDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHH
Confidence 4667777777651 13469999999999999
No 122
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.64 E-value=0.0024 Score=56.09 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHhC---CCeEEEcCCCCCcceE
Q psy4476 135 NRSQVYAVKHAIQR---PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 135 N~sQ~~AV~~aL~~---~~tLIqGPPGTGKTtT 164 (266)
++...+.+..++.+ +..+|+||||||||++
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTAT 54 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHH
Confidence 35566666666643 3489999999999999
No 123
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.0018 Score=61.49 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHh----C------------CCeEEEcCCCCCcceE
Q psy4476 136 RSQVYAVKHAIQ----R------------PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 136 ~sQ~~AV~~aL~----~------------~~tLIqGPPGTGKTtT 164 (266)
+.|++.++.++. + +=.|++||||||||.+
T Consensus 188 d~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 188 ESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHH
Confidence 668888877652 1 1268999999999998
No 124
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.58 E-value=0.0061 Score=57.50 Aligned_cols=20 Identities=20% Similarity=0.007 Sum_probs=16.7
Q ss_pred CeEEEcCCCCCcceEeCccccccc
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
..+|+|||||||||. +.+|.
T Consensus 132 ~lll~Gp~G~GKTtL----a~aia 151 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHL----LQSIG 151 (440)
T ss_dssp CEEEECSSSSSHHHH----HHHHH
T ss_pred eEEEECCCCCCHHHH----HHHHH
Confidence 579999999999999 55554
No 125
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.50 E-value=0.0022 Score=56.75 Aligned_cols=14 Identities=21% Similarity=0.190 Sum_probs=13.3
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|.|||||||||+
T Consensus 47 vlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 47 VLLAGPPGCGKTLL 60 (274)
T ss_dssp EEEESSTTSCHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 68999999999999
No 126
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.50 E-value=0.004 Score=58.85 Aligned_cols=30 Identities=17% Similarity=0.039 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHh-------------C--CCeEEEcCCCCCcceE
Q psy4476 135 NRSQVYAVKHAIQ-------------R--PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 135 N~sQ~~AV~~aL~-------------~--~~tLIqGPPGTGKTtT 164 (266)
.+..++++..++. . .-.||+||||||||++
T Consensus 139 ~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 139 LEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHH
T ss_pred HHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHH
Confidence 3567888877661 1 2368999999999999
No 127
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.49 E-value=0.0044 Score=54.43 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHhC---CCeEEEcCCCCCcceE
Q psy4476 135 NRSQVYAVKHAIQR---PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 135 N~sQ~~AV~~aL~~---~~tLIqGPPGTGKTtT 164 (266)
.+...+.+..++.+ +..+|+||||||||++
T Consensus 26 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~l 58 (323)
T 1sxj_B 26 NKETIDRLQQIAKDGNMPHMIISGMPGIGKTTS 58 (323)
T ss_dssp CTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHH
Confidence 34566777777764 3489999999999999
No 128
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.47 E-value=0.0062 Score=54.21 Aligned_cols=38 Identities=8% Similarity=-0.013 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHH-HhC-----CCeEEEcCCCCCcceEeCccccccc
Q psy4476 132 PDLNRSQVYAVKHA-IQR-----PLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 132 ~~LN~sQ~~AV~~a-L~~-----~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
...|+.+..+.... |.. +-.+|.||||||||.. ..+|.
T Consensus 82 qg~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~----a~ala 125 (267)
T 1u0j_A 82 NGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNI----AEAIA 125 (267)
T ss_dssp TTCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHH----HHHHH
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHH----HHHHH
Confidence 46888886665444 432 2478999999999999 44554
No 129
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.47 E-value=0.0044 Score=55.78 Aligned_cols=30 Identities=10% Similarity=0.068 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHhC-C---CeEEEcCCCCCcceE
Q psy4476 135 NRSQVYAVKHAIQR-P---LSLIQGMNQRSNGLH 164 (266)
Q Consensus 135 N~sQ~~AV~~aL~~-~---~tLIqGPPGTGKTtT 164 (266)
.+...+.+..++.. . ..||+||||||||++
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~l 54 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSI 54 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHH
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHH
Confidence 45566777777753 2 369999999999999
No 130
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.46 E-value=0.0042 Score=53.72 Aligned_cols=41 Identities=10% Similarity=-0.003 Sum_probs=28.2
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCccc
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGANK 196 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ar 196 (266)
.+.+|.||||+||||. +...+. ... ..+.+|++.-|.--.|
T Consensus 13 ~i~litG~mGsGKTT~----ll~~~~--r~~-~~g~kVli~~~~~d~r 53 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAE----LIRRLH--RLE-YADVKYLVFKPKIDTR 53 (223)
T ss_dssp EEEEEECSTTSCHHHH----HHHHHH--HHH-HTTCCEEEEEECCCGG
T ss_pred EEEEEECCCCCcHHHH----HHHHHH--HHH-hcCCEEEEEEeccCch
Confidence 5889999999999999 333332 222 2467899887665445
No 131
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.45 E-value=0.0046 Score=62.59 Aligned_cols=55 Identities=11% Similarity=0.021 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHh-CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 136 RSQVYAVKHAIQ-RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 136 ~sQ~~AV~~aL~-~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..|++++..++. +...+|.||+|+|||+. +..++.........+.++++.+|+-.
T Consensus 96 ~~q~~~i~~~l~~~~~vii~gpTGSGKTtl----lp~ll~~~~~~~~~g~~ilvl~P~r~ 151 (773)
T 2xau_A 96 HAQRDEFLKLYQNNQIMVFVGETGSGKTTQ----IPQFVLFDEMPHLENTQVACTQPRRV 151 (773)
T ss_dssp GGGHHHHHHHHHHCSEEEEECCTTSSHHHH----HHHHHHHHHCGGGGTCEEEEEESCHH
T ss_pred HHHHHHHHHHHhCCCeEEEECCCCCCHHHH----HHHHHHHhccccCCCceEEecCchHH
Confidence 579999999986 47899999999999996 44443101111112567999999865
No 132
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.43 E-value=0.0031 Score=56.66 Aligned_cols=30 Identities=23% Similarity=0.197 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHH-hC---CCeEEEcCCCCCcceE
Q psy4476 135 NRSQVYAVKHAI-QR---PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 135 N~sQ~~AV~~aL-~~---~~tLIqGPPGTGKTtT 164 (266)
++...++++.++ .. +-.+|.|||||||||+
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl 52 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTR 52 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHH
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHH
Confidence 456666676666 32 3389999999999999
No 133
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.0018 Score=61.94 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHh----C------------CCeEEEcCCCCCcceE
Q psy4476 136 RSQVYAVKHAIQ----R------------PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 136 ~sQ~~AV~~aL~----~------------~~tLIqGPPGTGKTtT 164 (266)
+.|++.++.++. + +=.|++||||||||.+
T Consensus 215 ~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 215 KDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHH
Confidence 568888876531 1 1258999999999998
No 134
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=95.42 E-value=0.006 Score=64.13 Aligned_cols=55 Identities=13% Similarity=-0.094 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 133 DLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 133 ~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
.+++.|++|+..++...-.+|++|.|+|||... +..++ ..+ ..+.++|+.+|+-.
T Consensus 78 ~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~---l~~il--~~~--~~~~~~Lil~Ptre 132 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFG---MMTAL--WLA--RKGKKSALVFPTVT 132 (1104)
T ss_dssp CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHH---HHHHH--HHH--TTTCCEEEEESSHH
T ss_pred CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHH---HHHHH--HHH--hcCCeEEEEechHH
Confidence 578999999999999888899999999999962 22222 122 25679999999986
No 135
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.39 E-value=0.0025 Score=54.87 Aligned_cols=14 Identities=14% Similarity=0.024 Sum_probs=13.3
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|.|||||||||+
T Consensus 52 ~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 52 VLLVGPPGVGKTHL 65 (254)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999999
No 136
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.37 E-value=0.0097 Score=62.81 Aligned_cols=55 Identities=11% Similarity=-0.093 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHh----CC--CeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 133 DLNRSQVYAVKHAIQ----RP--LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 133 ~LN~sQ~~AV~~aL~----~~--~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
.+++.|++|+..++. .. -.||+||.|+|||.+. +.++. ... ..++++++.+|+-.
T Consensus 603 ~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~va---l~aa~---~~~-~~g~~vlvlvPt~~ 663 (1151)
T 2eyq_A 603 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVA---MRAAF---LAV-DNHKQVAVLVPTTL 663 (1151)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHH---HHHHH---HHH-TTTCEEEEECSSHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHH---HHHHH---HHH-HhCCeEEEEechHH
Confidence 578999999999986 22 5799999999999883 11111 111 24679999999986
No 137
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.33 E-value=0.0047 Score=59.55 Aligned_cols=27 Identities=11% Similarity=0.006 Sum_probs=20.0
Q ss_pred HHHHHHHHH-hCCCeEEEcCCCCCcceE
Q psy4476 138 QVYAVKHAI-QRPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 138 Q~~AV~~aL-~~~~tLIqGPPGTGKTtT 164 (266)
-.+++..++ ...-.||.||||||||+.
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 344455554 456679999999999999
No 138
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.31 E-value=0.0027 Score=58.09 Aligned_cols=15 Identities=13% Similarity=0.018 Sum_probs=13.7
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
-.||+||||||||++
T Consensus 86 ~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 86 GILLYGPPGTGKSYL 100 (355)
T ss_dssp CEEEECSTTSCHHHH
T ss_pred eEEEECCCCCcHHHH
Confidence 368999999999999
No 139
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=95.30 E-value=0.0014 Score=68.98 Aligned_cols=70 Identities=13% Similarity=0.071 Sum_probs=45.0
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhh-ccCCceEecCCCCc-----ccccc--c-ccccCccccccccccccccc
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNR-LRNKSNLNHRPSGA-----NKLSQ--G-HLSQGNNSQEITQPYSQVMS 220 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~-~~~~kiLvcAPSN~-----arl~~--g-~~~~g~~~~~i~~~~~~~~~ 220 (266)
+.+|.|+||||||++++. .|. +.+.. ..+.+||+..|... .|+.. | .-..+..-.|+|++...+++
T Consensus 3 l~lV~agAGSGKT~~l~~---ri~--~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l~~~~~~~~~V~TFhsla~~il~ 77 (1166)
T 3u4q_B 3 AEFLVGRSGSGKTKLIIN---SIQ--DELRRAPFGKPIIFLVPDQMTFLMEYELAKTPDMGGMIRAQVFSFSRLAWRVLQ 77 (1166)
T ss_dssp EEEEEECTTSSHHHHHHH---HHH--HHHHHCTTSSCEEEECCGGGHHHHHHHHTCCSSCSEESSEEEECHHHHHHHHHH
T ss_pred EEEEEeCCCCChHHHHHH---HHH--HHHHhCCCCCcEEEEecCcccHHHHHHHHHhhhhcceeeeEEecHHHHHHHHHH
Confidence 569999999999999633 333 22222 12478999999665 35544 1 11233456699997776777
Q ss_pred CCCC
Q psy4476 221 QGGG 224 (266)
Q Consensus 221 ~~g~ 224 (266)
+.|+
T Consensus 78 ~~g~ 81 (1166)
T 3u4q_B 78 HTGG 81 (1166)
T ss_dssp HHSC
T ss_pred HcCC
Confidence 6653
No 140
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=95.16 E-value=0.0087 Score=62.58 Aligned_cols=53 Identities=9% Similarity=-0.162 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 134 LNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 134 LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
+ +.|.+|+..++...-.+|++|.|+|||... +..+. .+.. .+.++|+.+|+-.
T Consensus 58 p-~iQ~~ai~~il~g~dvlv~apTGSGKTl~~---lp~l~---~~~~-~~~~~lil~Ptre 110 (1054)
T 1gku_B 58 R-AIQKMWAKRILRKESFAATAPTGVGKTSFG---LAMSL---FLAL-KGKRCYVIFPTSL 110 (1054)
T ss_dssp C-HHHHHHHHHHHTTCCEECCCCBTSCSHHHH---HHHHH---HHHT-TSCCEEEEESCHH
T ss_pred H-HHHHHHHHHHHhCCCEEEEcCCCCCHHHHH---HHHHH---HHhh-cCCeEEEEeccHH
Confidence 6 899999999999888999999999999742 22222 2222 4679999999986
No 141
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=95.07 E-value=0.0067 Score=58.41 Aligned_cols=53 Identities=9% Similarity=-0.078 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..+.+.|++|+..++...-.+|.+|.|+|||.+- ++. .+. ...++++.+|+-+
T Consensus 24 ~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~------~lp--~l~--~~g~~lvi~P~~a 76 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCY------QIP--ALL--LNGLTVVVSPLIS 76 (523)
T ss_dssp SSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHH------HHH--HHH--SSSEEEEECSCHH
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHH------HHH--HHH--hCCCEEEECChHH
Confidence 3567889999999999888999999999999761 121 122 3467999999876
No 142
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.04 E-value=0.0037 Score=59.30 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=18.5
Q ss_pred HHHHHHHh-CC--CeEEEcCCCCCcceE
Q psy4476 140 YAVKHAIQ-RP--LSLIQGMNQRSNGLH 164 (266)
Q Consensus 140 ~AV~~aL~-~~--~tLIqGPPGTGKTtT 164 (266)
..+..++. .. ..||+||||||||++
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTL 66 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHH
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHH
Confidence 34555554 33 479999999999999
No 143
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.00 E-value=0.0038 Score=54.63 Aligned_cols=14 Identities=14% Similarity=0.024 Sum_probs=13.3
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|.|||||||||+
T Consensus 76 vll~Gp~GtGKTtl 89 (278)
T 1iy2_A 76 VLLVGPPGVGKTHL 89 (278)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCcChHHHH
Confidence 68999999999999
No 144
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=94.98 E-value=0.019 Score=54.01 Aligned_cols=58 Identities=9% Similarity=-0.055 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHH---hC-CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAI---QR-PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL---~~-~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..|-+.|++||..++ .. .=.+|.-|.|+|||.+. .+++. .........++||.+|+..
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~a----i~~i~-~~~~~~~~~~~LIv~P~~l 97 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQT----IAVFS-DAKKENELTPSLVICPLSV 97 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHH----HHHHH-HHHHTTCCSSEEEEECSTT
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHH----HHHHH-HHHhcCCCCCEEEEccHHH
Confidence 468999999998764 23 45678889999999993 33332 1222223468999999664
No 145
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.98 E-value=0.0048 Score=52.13 Aligned_cols=41 Identities=7% Similarity=-0.066 Sum_probs=26.6
Q ss_pred CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 148 RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..+++|.|+||+|||+. ...++ .......+.+++.+.-.-.
T Consensus 30 G~l~~i~G~pG~GKT~l----~l~~~--~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTF----AAQFI--YKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp TCEEEEECCTTSSHHHH----HHHHH--HHHHHHHCCCEEEEESSSC
T ss_pred CeEEEEEeCCCCCHHHH----HHHHH--HHHHHhcCCCceeecccCC
Confidence 36899999999999999 44444 1222224567777654433
No 146
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.95 E-value=0.0042 Score=58.74 Aligned_cols=15 Identities=13% Similarity=0.080 Sum_probs=13.7
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
-.|+.||||||||++
T Consensus 65 ~iLl~GppGtGKT~l 79 (456)
T 2c9o_A 65 AVLLAGPPGTGKTAL 79 (456)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCcCCHHHH
Confidence 378999999999999
No 147
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.94 E-value=0.0091 Score=56.71 Aligned_cols=29 Identities=10% Similarity=0.100 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhC---CCeEEEcCCCCCcceE
Q psy4476 136 RSQVYAVKHAIQR---PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 136 ~sQ~~AV~~aL~~---~~tLIqGPPGTGKTtT 164 (266)
+...+.+..+|.+ +-.||.||||||||++
T Consensus 186 ~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAI 217 (468)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHH
T ss_pred HHHHHHHHHHHhccCCCCeEEECCCCCCHHHH
Confidence 4455666666643 3468999999999999
No 148
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.89 E-value=0.0074 Score=54.54 Aligned_cols=29 Identities=14% Similarity=-0.058 Sum_probs=20.4
Q ss_pred HHHHHHH---HHHHhC-C---CeEEEcCCCCCcceE
Q psy4476 136 RSQVYAV---KHAIQR-P---LSLIQGMNQRSNGLH 164 (266)
Q Consensus 136 ~sQ~~AV---~~aL~~-~---~tLIqGPPGTGKTtT 164 (266)
++|.+++ ..++.+ + ..|++||||||||++
T Consensus 5 pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~ 40 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDAL 40 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHH
T ss_pred CchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHH
Confidence 4455554 444543 3 479999999999999
No 149
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.84 E-value=0.0051 Score=59.10 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHhC----------------CCeEEEcCCCCCcceE
Q psy4476 135 NRSQVYAVKHAIQR----------------PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 135 N~sQ~~AV~~aL~~----------------~~tLIqGPPGTGKTtT 164 (266)
...|.+.+...+.. .-.||+||||||||++
T Consensus 209 ~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~l 254 (489)
T 3hu3_A 209 CRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLI 254 (489)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHH
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHH
Confidence 35577777665431 2369999999999999
No 150
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.80 E-value=0.0063 Score=51.34 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=24.2
Q ss_pred CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCC
Q psy4476 148 RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRP 191 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAP 191 (266)
..+++|.||||+||||. ...++ ..... .+.+++...-
T Consensus 23 G~~~~i~G~~GsGKTtl----~~~~~--~~~~~-~~~~v~~~~~ 59 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIF----SQQFL--WNGLK-MGEPGIYVAL 59 (247)
T ss_dssp TCEEEEEECTTSSHHHH----HHHHH--HHHHH-TTCCEEEEES
T ss_pred CcEEEEECCCCCCHHHH----HHHHH--HHHHh-cCCeEEEEEc
Confidence 36899999999999999 44444 22222 3456665443
No 151
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.79 E-value=0.0093 Score=53.37 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=14.4
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.-.||+||||||||++
T Consensus 26 ~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELV 41 (304)
T ss_dssp SCEEEESCTTSCHHHH
T ss_pred CcEEEECCCCchHHHH
Confidence 4578999999999998
No 152
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.72 E-value=0.014 Score=57.23 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhC-CCeEEEcCCCCCcceE
Q psy4476 136 RSQVYAVKHAIQR-PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 136 ~sQ~~AV~~aL~~-~~tLIqGPPGTGKTtT 164 (266)
..-.+++..++.. ...+|.|||||||||+
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHH
Confidence 3445566666654 6889999999999999
No 153
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.71 E-value=0.0071 Score=52.61 Aligned_cols=30 Identities=3% Similarity=-0.073 Sum_probs=20.1
Q ss_pred eEEEcCCCCCcceEeCccccccccchhhhhccCCceE
Q psy4476 151 SLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNL 187 (266)
Q Consensus 151 tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiL 187 (266)
.++.|+||+||||+ ...+. ..+.. .+.+|+
T Consensus 9 I~~~~kgGvGKTt~----a~~la--~~l~~-~G~~V~ 38 (228)
T 2r8r_A 9 VFLGAAPGVGKTYA----MLQAA--HAQLR-QGVRVM 38 (228)
T ss_dssp EEEESSTTSSHHHH----HHHHH--HHHHH-TTCCEE
T ss_pred EEEECCCCCcHHHH----HHHHH--HHHHH-CCCCEE
Confidence 57799999999999 44444 23333 456765
No 154
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.53 E-value=0.0086 Score=47.31 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=14.1
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||||+||||.
T Consensus 2 ~~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 2 KVILITGMPGSGKSEF 17 (179)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3568899999999998
No 155
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.52 E-value=0.01 Score=56.48 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=26.7
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCce-EecCCCCc
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSN-LNHRPSGA 194 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~ki-LvcAPSN~ 194 (266)
+.+|.||||+||||| ++.+.. .+.+ .+.+| ++++.+.+
T Consensus 102 vIlivG~~G~GKTTt----~~kLA~--~l~~-~G~kVllv~~D~~R 140 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTT----VAKLAR--YFQK-RGYKVGVVCSDTWR 140 (443)
T ss_dssp EEEEECCTTSSHHHH----HHHHHH--HHHT-TTCCEEEEECCCSS
T ss_pred EEEEECcCCCCHHHH----HHHHHH--HHHH-CCCeEEEEeCCCcc
Confidence 568899999999999 566662 3343 45565 56777665
No 156
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.48 E-value=0.0084 Score=53.08 Aligned_cols=28 Identities=14% Similarity=0.420 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCCCCcceE
Q psy4476 136 RSQVYAVKHAIQRPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 136 ~sQ~~AV~~aL~~~~tLIqGPPGTGKTtT 164 (266)
+.+.+.+.. +..++.+|+||+|+|||+.
T Consensus 19 ~~el~~L~~-l~~~~v~i~G~~G~GKT~L 46 (357)
T 2fna_A 19 EKEIEKLKG-LRAPITLVLGLRRTGKSSI 46 (357)
T ss_dssp HHHHHHHHH-TCSSEEEEEESTTSSHHHH
T ss_pred HHHHHHHHH-hcCCcEEEECCCCCCHHHH
Confidence 456777777 7668899999999999999
No 157
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=94.42 E-value=0.0044 Score=61.82 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=36.7
Q ss_pred CCHHHH-----HHHHHHH------hCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 134 LNRSQV-----YAVKHAI------QRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 134 LN~sQ~-----~AV~~aL------~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
+++-|+ +||..++ ...-.||+||.|+|||... +..++. .+.. .+.++|+++|+-.
T Consensus 216 pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~---ll~il~--~l~~-~~~~~lilaPTr~ 281 (673)
T 2wv9_A 216 VSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRI---LPQIIK--DAIQ-KRLRTAVLAPTRV 281 (673)
T ss_dssp EEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTH---HHHHHH--HHHH-TTCCEEEEESSHH
T ss_pred cCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHH---HHHHHH--HHHh-CCCcEEEEccHHH
Confidence 444555 8887777 5678899999999999983 223331 2222 4579999999976
No 158
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=94.41 E-value=0.029 Score=61.56 Aligned_cols=60 Identities=10% Similarity=0.008 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHhC-CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 130 NLPDLNRSQVYAVKHAIQR-PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 130 ~~~~LN~sQ~~AV~~aL~~-~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
.+..+|+.|.+|+...+.. .=.+|..|.|+|||... -.+|+ ..+.+..+.|+++.||+=+
T Consensus 923 ~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTlia---elail--~~l~~~~~~kavyi~P~ra 983 (1724)
T 4f92_B 923 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICA---EFAIL--RMLLQSSEGRCVYITPMEA 983 (1724)
T ss_dssp TCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHH---HHHHH--HHHHHCTTCCEEEECSCHH
T ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHH---HHHHH--HHHHhCCCCEEEEEcChHH
Confidence 3567999999999999865 56899999999999972 12344 2333334678999999876
No 159
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.37 E-value=0.0089 Score=49.73 Aligned_cols=35 Identities=9% Similarity=0.001 Sum_probs=23.6
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecC
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHR 190 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcA 190 (266)
.+.+|.||||+||||. +..|. ..... .+.+|+...
T Consensus 24 ~~~~i~G~~GsGKTtl----~~~l~--~~~~~-~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIF----SLHFI--AKGLR-DGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHH----HHHHH--HHHHH-HTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHH----HHHHH--HHHHH-CCCeEEEEE
Confidence 5889999999999999 45554 22222 345666544
No 160
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.34 E-value=0.0079 Score=47.87 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=13.5
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||||+||||+
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 457899999999999
No 161
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.32 E-value=0.0088 Score=56.71 Aligned_cols=38 Identities=8% Similarity=0.053 Sum_probs=26.4
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCce-EecCCCCc
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSN-LNHRPSGA 194 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~ki-LvcAPSN~ 194 (266)
+.+|.||||+||||| ++.+. ..+.. .+.+| ++++++.+
T Consensus 99 vI~lvG~~GsGKTTt----~~kLA--~~l~~-~G~kVllv~~D~~r 137 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTT----AGKLA--YFYKK-RGYKVGLVAADVYR 137 (433)
T ss_dssp EEEECCCTTSCHHHH----HHHHH--HHHHH-TTCCEEEEEECCSC
T ss_pred EEEEECCCCCCHHHH----HHHHH--HHHHH-cCCeEEEEecCccc
Confidence 567889999999999 55555 23333 45666 46777665
No 162
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=94.32 E-value=0.017 Score=60.34 Aligned_cols=56 Identities=9% Similarity=-0.063 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHhC--------------CCeEEEcCCCCCcceEeCccccccccchhhhhc-cCCceEecCCCCc
Q psy4476 133 DLNRSQVYAVKHAIQR--------------PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRL-RNKSNLNHRPSGA 194 (266)
Q Consensus 133 ~LN~sQ~~AV~~aL~~--------------~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~-~~~kiLvcAPSN~ 194 (266)
.+-+.|..||..++.+ .-.+|+.|.|||||.+. ..++ ..+... ...++|+.+|++.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~----~~l~--~ll~~~~~~~rvLvlvpr~e 341 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS----FKAA--RLATELDFIDKVFFVVDRKD 341 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH----HHHH--HHHTTCTTCCEEEEEECGGG
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH----HHHH--HHHHhcCCCceEEEEeCcHH
Confidence 4779999999998862 45799999999999993 3333 122211 2368999999876
No 163
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.31 E-value=0.0084 Score=48.29 Aligned_cols=16 Identities=6% Similarity=0.106 Sum_probs=14.2
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||||+||||+
T Consensus 4 ~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGI 19 (178)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3568899999999999
No 164
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.26 E-value=0.013 Score=54.84 Aligned_cols=40 Identities=5% Similarity=0.014 Sum_probs=28.8
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
+..||+||.|+|||.+. +..++. .+.. .+.++++.+|+-.
T Consensus 3 ~~~lv~a~TGsGKT~~~---l~~~l~--~~~~-~g~~~lvl~Pt~~ 42 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV---LPQLVR--EAVK-KRLRTVILAPTRV 42 (431)
T ss_dssp CEEEEECCTTSCTTTTH---HHHHHH--HHHH-TTCCEEEEESSHH
T ss_pred CEEEEEcCCCCCHHHHH---HHHHHH--HHHh-CCCCEEEECcHHH
Confidence 56799999999999983 133331 2222 4679999999986
No 165
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.25 E-value=0.0062 Score=55.44 Aligned_cols=29 Identities=10% Similarity=-0.023 Sum_probs=21.7
Q ss_pred HHHHHHHHHHH-h--------C-CCeEE--EcCCCCCcceE
Q psy4476 136 RSQVYAVKHAI-Q--------R-PLSLI--QGMNQRSNGLH 164 (266)
Q Consensus 136 ~sQ~~AV~~aL-~--------~-~~tLI--qGPPGTGKTtT 164 (266)
+.+.+.+..++ . . ...+| .||||||||++
T Consensus 28 ~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 28 RGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp CHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHH
T ss_pred HHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHH
Confidence 34666666666 2 2 36788 99999999999
No 166
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.24 E-value=0.02 Score=53.93 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHhC--CCeEEEcCCCCCcceEeCccccccc
Q psy4476 133 DLNRSQVYAVKHAIQR--PLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 133 ~LN~sQ~~AV~~aL~~--~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
.+...+..+++.++.. .+.+|.||.|+||||+ +.+|+
T Consensus 150 g~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl----L~all 188 (418)
T 1p9r_A 150 GMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT----LYAGL 188 (418)
T ss_dssp CCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHH----HHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH----HHHHH
Confidence 4677888888888753 5889999999999999 56655
No 167
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.20 E-value=0.01 Score=53.19 Aligned_cols=36 Identities=11% Similarity=-0.053 Sum_probs=23.7
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecC
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHR 190 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcA 190 (266)
.+.+|.||+|+||||+ +..+. ..+....+.+|++.+
T Consensus 106 ~vi~lvG~~GsGKTTl----~~~LA--~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTT----LAKLA--AISMLEKHKKIAFIT 141 (296)
T ss_dssp SEEEEEESTTSSHHHH----HHHHH--HHHHHTTCCCEEEEE
T ss_pred cEEEEECCCCCCHHHH----HHHHH--HHHHHhcCCEEEEEe
Confidence 4678899999999999 45444 233322456766543
No 168
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.16 E-value=0.01 Score=49.96 Aligned_cols=45 Identities=11% Similarity=0.021 Sum_probs=27.3
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCccccccc
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGANKLSQG 200 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~arl~~g 200 (266)
.+.+|.||+|+||||. +..++. ... ..+.+|++..|+--.|..++
T Consensus 9 ~i~v~~G~mgsGKTT~----ll~~a~--r~~-~~g~kV~v~k~~~d~r~~~~ 53 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEE----LIRRIR--RAK-IAKQKIQVFKPEIDNRYSKE 53 (191)
T ss_dssp EEEEEECSTTSSHHHH----HHHHHH--HHH-HTTCCEEEEEEC-------C
T ss_pred EEEEEECCCCCcHHHH----HHHHHH--HHH-HCCCEEEEEEeccCccchHH
Confidence 4789999999999999 333442 222 35789999888754555443
No 169
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.15 E-value=0.0083 Score=57.53 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=13.2
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.||.||||||||++
T Consensus 52 vLL~GppGtGKT~L 65 (476)
T 2ce7_A 52 ILLVGPPGTGKTLL 65 (476)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999999
No 170
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=94.10 E-value=0.026 Score=54.55 Aligned_cols=51 Identities=10% Similarity=-0.038 Sum_probs=36.7
Q ss_pred CCHHHHHHHH---HHHh-CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 134 LNRSQVYAVK---HAIQ-RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 134 LN~sQ~~AV~---~aL~-~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
+-+.|++++. .++. ..-.+|+.|.|||||... ++. .+. .+.++++++||..
T Consensus 4 ~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~------l~p--~l~--~~~~v~i~~pt~~ 58 (551)
T 3crv_A 4 LRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFS------LLV--SLE--VKPKVLFVVRTHN 58 (551)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHH------HHH--HHH--HCSEEEEEESSGG
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHH------HHH--HHh--CCCeEEEEcCCHH
Confidence 4578998554 4554 467899999999998772 221 122 4679999999997
No 171
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.03 E-value=0.019 Score=57.49 Aligned_cols=29 Identities=10% Similarity=0.100 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhC---CCeEEEcCCCCCcceE
Q psy4476 136 RSQVYAVKHAIQR---PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 136 ~sQ~~AV~~aL~~---~~tLIqGPPGTGKTtT 164 (266)
+...+.+..+|.+ +-.||.||||||||++
T Consensus 186 ~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~l 217 (758)
T 3pxi_A 186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAI 217 (758)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHH
T ss_pred hHHHHHHHHHHhCCCCCCeEEECCCCCCHHHH
Confidence 5566667777753 3469999999999998
No 172
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=94.03 E-value=0.013 Score=55.20 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=33.4
Q ss_pred HHHHHHh-CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 141 AVKHAIQ-RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 141 AV~~aL~-~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
++..++. +++.+|++|+|+|||... +..++. .+.. .+.++++++|+-.
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~---~~~~l~--~~~~-~~~~~lvl~Ptr~ 59 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRI---LPSIVR--EALL-RRLRTLILAPTRV 59 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTH---HHHHHH--HHHH-TTCCEEEEESSHH
T ss_pred HHHHHHhcCCeEEEECCCCCCHhhHH---HHHHHH--HHHh-cCCcEEEECCCHH
Confidence 4555665 477899999999999963 223331 2222 4579999999977
No 173
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.99 E-value=0.012 Score=47.12 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=13.7
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||||+||||.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 568899999999998
No 174
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.96 E-value=0.019 Score=54.57 Aligned_cols=15 Identities=13% Similarity=-0.073 Sum_probs=13.8
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
-.|+.||||||||+.
T Consensus 52 ~iLl~GppGtGKT~l 66 (444)
T 1g41_A 52 NILMIGPTGVGKTEI 66 (444)
T ss_dssp CEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 478999999999998
No 175
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.96 E-value=0.021 Score=50.36 Aligned_cols=30 Identities=13% Similarity=0.326 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHh-CCCeEEEcCCCCCcceEe
Q psy4476 136 RSQVYAVKHAIQ-RPLSLIQGMNQRSNGLHH 165 (266)
Q Consensus 136 ~sQ~~AV~~aL~-~~~tLIqGPPGTGKTtTi 165 (266)
+.+.+.+..++. .++.+|.||+|+|||+.+
T Consensus 18 ~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 18 EEESRKLEESLENYPLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp HHHHHHHHHHHHHCSEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCcCCHHHHH
Confidence 456777777775 478999999999999993
No 176
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=93.88 E-value=0.011 Score=55.72 Aligned_cols=42 Identities=12% Similarity=0.025 Sum_probs=29.8
Q ss_pred hCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 147 QRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 147 ~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
...-.||+||+|+|||.+. +..++. .+.. .+.++++++|+-.
T Consensus 7 ~g~~vlv~a~TGSGKT~~~---l~~~l~--~~~~-~~~~~lil~Ptr~ 48 (440)
T 1yks_A 7 KGMTTVLDFHPGAGKTRRF---LPQILA--ECAR-RRLRTLVLAPTRV 48 (440)
T ss_dssp TTCEEEECCCTTSSTTTTH---HHHHHH--HHHH-TTCCEEEEESSHH
T ss_pred CCCCEEEEcCCCCCHHHHH---HHHHHH--HHHh-cCCeEEEEcchHH
Confidence 3467899999999999983 223331 2222 4579999999987
No 177
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.87 E-value=0.0096 Score=58.48 Aligned_cols=15 Identities=20% Similarity=0.076 Sum_probs=13.9
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
-.|+.||||||||+.
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 479999999999999
No 178
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.84 E-value=0.0092 Score=48.63 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=14.6
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||||+||||+
T Consensus 10 ~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTI 25 (191)
T ss_dssp EEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4678999999999999
No 179
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.83 E-value=0.01 Score=53.43 Aligned_cols=26 Identities=19% Similarity=0.150 Sum_probs=19.4
Q ss_pred HHHHHHHHhC---CCeEEEcCCCCCcceE
Q psy4476 139 VYAVKHAIQR---PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 139 ~~AV~~aL~~---~~tLIqGPPGTGKTtT 164 (266)
.+.++.++.+ +..|++||||||||++
T Consensus 6 ~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~ 34 (305)
T 2gno_A 6 LETLKRIIEKSEGISILINGEDLSYPREV 34 (305)
T ss_dssp HHHHHHHHHTCSSEEEEEECSSSSHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEECCCCCCHHHH
Confidence 3444555553 4789999999999999
No 180
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.78 E-value=0.014 Score=52.73 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=22.5
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecC
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHR 190 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcA 190 (266)
+.+|.||||+||||| +..|. ..+.. .+.+|++.+
T Consensus 106 vi~ivG~~GsGKTTl----~~~LA--~~l~~-~g~kV~lv~ 139 (306)
T 1vma_A 106 VIMVVGVNGTGKTTS----CGKLA--KMFVD-EGKSVVLAA 139 (306)
T ss_dssp EEEEECCTTSSHHHH----HHHHH--HHHHH-TTCCEEEEE
T ss_pred EEEEEcCCCChHHHH----HHHHH--HHHHh-cCCEEEEEc
Confidence 567899999999999 45444 23332 356666543
No 181
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.77 E-value=0.01 Score=60.46 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=13.2
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.|++||||||||+.
T Consensus 241 ILL~GPPGTGKT~L 254 (806)
T 3cf2_A 241 ILLYGPPGTGKTLI 254 (806)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 58999999999998
No 182
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=93.71 E-value=0.025 Score=55.71 Aligned_cols=54 Identities=11% Similarity=0.081 Sum_probs=37.1
Q ss_pred CHHHHHHHHH---HHh-CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 135 NRSQVYAVKH---AIQ-RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 135 N~sQ~~AV~~---aL~-~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
=+.|++.+.. ++. ..-.+++.|.|||||...+ +.++. .+.. .+.||++|+||..
T Consensus 5 R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l--~p~l~---~~~~-~~~kvli~t~T~~ 62 (620)
T 4a15_A 5 RQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMAL--KSALQ---YSSE-RKLKVLYLVRTNS 62 (620)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHH--HHHHH---HHHH-HTCEEEEEESSHH
T ss_pred CHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHH--HHHHH---hhhh-cCCeEEEECCCHH
Confidence 3678877764 443 5788999999999997731 22222 1112 4679999999997
No 183
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=93.67 E-value=0.0088 Score=56.52 Aligned_cols=42 Identities=7% Similarity=0.029 Sum_probs=29.9
Q ss_pred hCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 147 QRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 147 ~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
.++..+|.+|.|+|||+.. +..++. .+.. .+.++|+++|+-.
T Consensus 20 ~~~~vlv~a~TGsGKT~~~---~l~il~--~~~~-~~~~~lvl~Ptr~ 61 (459)
T 2z83_A 20 KRQMTVLDLHPGSGKTRKI---LPQIIK--DAIQ-QRLRTAVLAPTRV 61 (459)
T ss_dssp TTCEEEECCCTTSCTTTTH---HHHHHH--HHHH-TTCCEEEEECSHH
T ss_pred cCCcEEEECCCCCCHHHHH---HHHHHH--HHHh-CCCcEEEECchHH
Confidence 3578999999999999983 122331 2222 4679999999986
No 184
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.64 E-value=0.019 Score=45.92 Aligned_cols=16 Identities=6% Similarity=-0.078 Sum_probs=14.6
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||||+||||+
T Consensus 5 ~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4678999999999999
No 185
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.57 E-value=0.012 Score=56.77 Aligned_cols=14 Identities=14% Similarity=0.024 Sum_probs=13.3
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|.||||||||+.
T Consensus 67 vLL~GppGtGKTtL 80 (499)
T 2dhr_A 67 VLLVGPPGVGKTHL 80 (499)
T ss_dssp EEEECSSSSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 69999999999999
No 186
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.53 E-value=0.019 Score=46.42 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=14.7
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
++.+|.||||+||||.
T Consensus 12 ~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 12 PNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEEeCCCCCHHHH
Confidence 5678999999999999
No 187
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=93.49 E-value=0.029 Score=54.14 Aligned_cols=52 Identities=12% Similarity=0.006 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHH---HHh-CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 133 DLNRSQVYAVKH---AIQ-RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 133 ~LN~sQ~~AV~~---aL~-~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
.+-+.|++++.. ++. ..-.+|+.|.|||||.+. ++. .+. ...++++++||..
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~------l~~--~~~--~~~~~~~~~~t~~ 62 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFV------EVL--GMQ--LKKKVLIFTRTHS 62 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHH------HHH--HHH--HTCEEEEEESCHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHH------HHH--HHh--CCCcEEEEcCCHH
Confidence 455789987654 444 468899999999999761 221 111 3579999999997
No 188
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.49 E-value=0.014 Score=47.25 Aligned_cols=17 Identities=6% Similarity=-0.068 Sum_probs=14.5
Q ss_pred CCeEEEcCCCCCcceEe
Q psy4476 149 PLSLIQGMNQRSNGLHH 165 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTi 165 (266)
+..+|.||||+||||+.
T Consensus 6 ~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45688999999999993
No 189
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=93.48 E-value=0.0052 Score=60.66 Aligned_cols=48 Identities=10% Similarity=0.025 Sum_probs=34.8
Q ss_pred HHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 141 AVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 141 AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
++..++...-.++++|.|+|||+.. ...++. .+.. .+.++|+++|+..
T Consensus 179 ~i~~l~~g~dvlv~a~TGSGKT~~~---~lpil~--~l~~-~~~~vLvl~Ptre 226 (618)
T 2whx_A 179 DEDIFRKKRLTIMDLHPGAGKTKRI---LPSIVR--EALK-RRLRTLILAPTRV 226 (618)
T ss_dssp CGGGGSTTCEEEECCCTTSSTTTTH---HHHHHH--HHHH-TTCCEEEEESSHH
T ss_pred CHHHHhcCCeEEEEcCCCCCHHHHH---HHHHHH--HHHh-CCCeEEEEcChHH
Confidence 4666667788999999999999983 123332 2222 4679999999987
No 190
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.43 E-value=0.018 Score=46.58 Aligned_cols=16 Identities=6% Similarity=0.171 Sum_probs=14.3
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||||+||||.
T Consensus 4 ~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4678999999999999
No 191
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.39 E-value=0.017 Score=46.60 Aligned_cols=15 Identities=7% Similarity=0.282 Sum_probs=13.5
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||||+||||.
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 457899999999999
No 192
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.39 E-value=0.045 Score=46.42 Aligned_cols=32 Identities=9% Similarity=-0.101 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHhCCCeEEEcCCCCCcceE
Q psy4476 133 DLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 133 ~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtT 164 (266)
.-+..|+.|+...-...+..|.||.|+||||.
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 34667888888876678999999999999999
No 193
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.39 E-value=0.013 Score=56.86 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=14.7
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
+..+|.||||||||++
T Consensus 109 ~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSL 124 (543)
T ss_dssp CEEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4689999999999999
No 194
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.32 E-value=0.019 Score=46.62 Aligned_cols=16 Identities=13% Similarity=0.316 Sum_probs=14.4
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
++.+|.||||+||||+
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4678999999999999
No 195
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.31 E-value=0.023 Score=46.31 Aligned_cols=15 Identities=7% Similarity=0.295 Sum_probs=13.4
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+-+|.||||+||||.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 357899999999999
No 196
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.26 E-value=0.021 Score=50.29 Aligned_cols=37 Identities=3% Similarity=-0.192 Sum_probs=24.3
Q ss_pred CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecC
Q psy4476 148 RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHR 190 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcA 190 (266)
..+.+|.||||+||||. +..|. ..+....+.+|+...
T Consensus 35 G~~~~i~G~~G~GKTTl----~~~ia--~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTF----VRQQA--LQWGTAMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEESTTSSHHHH----HHHHH--HHHHHTSCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHH----HHHHH--HHHHHHcCCeEEEEe
Confidence 36899999999999999 44444 222222244676554
No 197
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.25 E-value=0.017 Score=47.36 Aligned_cols=16 Identities=19% Similarity=0.027 Sum_probs=14.2
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
...+|.||||+||||+
T Consensus 11 ~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 11 INILITGTPGTGKTSM 26 (184)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3568999999999999
No 198
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.22 E-value=0.028 Score=56.14 Aligned_cols=29 Identities=10% Similarity=0.073 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhC---CCeEEEcCCCCCcceE
Q psy4476 136 RSQVYAVKHAIQR---PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 136 ~sQ~~AV~~aL~~---~~tLIqGPPGTGKTtT 164 (266)
+.+.+.+..+|.+ .-.||.||||||||++
T Consensus 192 ~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~l 223 (758)
T 1r6b_X 192 EKELERAIQVLCRRRKNNPLLVGESGVGKTAI 223 (758)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSSHHHH
T ss_pred HHHHHHHHHHHhccCCCCeEEEcCCCCCHHHH
Confidence 4566667777753 4569999999999999
No 199
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.17 E-value=0.016 Score=51.49 Aligned_cols=15 Identities=13% Similarity=0.034 Sum_probs=13.8
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||||+||||+
T Consensus 35 livl~G~sGsGKSTl 49 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEECCTTSCTHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 568899999999999
No 200
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.11 E-value=0.022 Score=45.99 Aligned_cols=15 Identities=7% Similarity=-0.013 Sum_probs=13.6
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
..+|.||||+||||+
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 467899999999999
No 201
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.10 E-value=0.035 Score=52.45 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=23.6
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCceE-ecCCC
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNL-NHRPS 192 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiL-vcAPS 192 (266)
+.+|.||||+||||+ +..+.. .+.+ .+.+|+ +++..
T Consensus 101 vI~ivG~~GvGKTTl----a~~La~--~l~~-~G~kVllv~~D~ 137 (432)
T 2v3c_C 101 VILLVGIQGSGKTTT----AAKLAR--YIQK-RGLKPALIAADT 137 (432)
T ss_dssp CEEEECCSSSSTTHH----HHHHHH--HHHH-HHCCEEEECCSC
T ss_pred EEEEECCCCCCHHHH----HHHHHH--HHHH-cCCeEEEEeccc
Confidence 567899999999999 555552 3333 345655 44443
No 202
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.07 E-value=0.023 Score=56.97 Aligned_cols=14 Identities=7% Similarity=-0.081 Sum_probs=13.5
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.|+.||||||||++
T Consensus 524 ~Ll~Gp~GtGKT~l 537 (758)
T 3pxi_A 524 FIFLGPTGVGKTEL 537 (758)
T ss_dssp EEEESCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 79999999999999
No 203
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.05 E-value=0.021 Score=47.58 Aligned_cols=14 Identities=14% Similarity=0.385 Sum_probs=12.7
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|.||||+||||.
T Consensus 3 I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 46899999999999
No 204
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.96 E-value=0.015 Score=47.41 Aligned_cols=15 Identities=20% Similarity=0.219 Sum_probs=13.7
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||||+||||+
T Consensus 4 ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 4 LYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 568899999999999
No 205
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.89 E-value=0.023 Score=51.55 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=22.6
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCceEec
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNH 189 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvc 189 (266)
+.+|.||+|.||||| +..|. ..+.. .+.+|++.
T Consensus 107 vI~ivG~~G~GKTT~----~~~LA--~~l~~-~g~kVlli 139 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTS----LAKMA--NYYAE-LGYKVLIA 139 (320)
T ss_dssp EEEEESSTTSSHHHH----HHHHH--HHHHH-TTCCEEEE
T ss_pred EEEEECCCCCCHHHH----HHHHH--HHHHH-CCCeEEEE
Confidence 567889999999999 45444 23333 45677654
No 206
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.86 E-value=0.018 Score=47.72 Aligned_cols=16 Identities=6% Similarity=-0.029 Sum_probs=14.6
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||||+||||+
T Consensus 26 ~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CEEEEEcCCCCCHHHH
Confidence 4678999999999999
No 207
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.81 E-value=0.017 Score=48.56 Aligned_cols=17 Identities=6% Similarity=0.001 Sum_probs=15.6
Q ss_pred CCCeEEEcCCCCCcceE
Q psy4476 148 RPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtT 164 (266)
..+++|.||||+||||+
T Consensus 24 G~~~~i~G~~GsGKTtl 40 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQI 40 (243)
T ss_dssp TSEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 36899999999999999
No 208
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.79 E-value=0.023 Score=46.07 Aligned_cols=15 Identities=13% Similarity=0.202 Sum_probs=13.7
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||||+||||.
T Consensus 7 ~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 7 LIIVTGHPATGKTTL 21 (193)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 568899999999998
No 209
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.78 E-value=0.024 Score=51.92 Aligned_cols=16 Identities=6% Similarity=0.171 Sum_probs=14.6
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||||||||+.
T Consensus 124 sviLI~GpPGsGKTtL 139 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPL 139 (331)
T ss_dssp EEEEEECSCSSSHHHH
T ss_pred cEEEEEcCCCCCHHHH
Confidence 5679999999999999
No 210
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.76 E-value=0.025 Score=47.09 Aligned_cols=14 Identities=14% Similarity=0.392 Sum_probs=12.7
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|.||||+||||.
T Consensus 3 I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 46899999999999
No 211
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.75 E-value=0.026 Score=51.76 Aligned_cols=16 Identities=13% Similarity=0.013 Sum_probs=15.2
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+++|.||||+||||.
T Consensus 62 ~iv~I~G~pGsGKTtL 77 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTV 77 (349)
T ss_dssp SEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 6899999999999999
No 212
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.75 E-value=0.018 Score=48.18 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=14.8
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||+|+||||+
T Consensus 9 ~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred cEEEEECcCCCCHHHH
Confidence 5788999999999999
No 213
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.71 E-value=0.078 Score=51.12 Aligned_cols=36 Identities=11% Similarity=0.014 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHhC-CCeEEEcCCCCCcceEeCccccccc
Q psy4476 134 LNRSQVYAVKHAIQR-PLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 134 LN~sQ~~AV~~aL~~-~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
+++.+.+-+..++.. ...+|.||+|+||||+ +.+|+
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl----L~aL~ 281 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT----LNAIM 281 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH----HHHHG
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH----HHHHH
Confidence 667777777777765 5789999999999999 55554
No 214
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.68 E-value=0.018 Score=47.67 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=15.1
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+++|.||||+||||.
T Consensus 21 ~~~~i~G~~GsGKTtl 36 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTL 36 (220)
T ss_dssp SEEEEECSTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 5889999999999999
No 215
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.63 E-value=0.039 Score=50.27 Aligned_cols=34 Identities=12% Similarity=-0.014 Sum_probs=23.1
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecC
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHR 190 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcA 190 (266)
+..|.|+||+||||+ +..+.. .+.. .+.+|++.+
T Consensus 81 ~I~i~G~~G~GKSTl----~~~L~~--~l~~-~g~kV~vi~ 114 (355)
T 3p32_A 81 RVGITGVPGVGKSTA----IEALGM--HLIE-RGHRVAVLA 114 (355)
T ss_dssp EEEEECCTTSSHHHH----HHHHHH--HHHT-TTCCEEEEE
T ss_pred EEEEECCCCCCHHHH----HHHHHH--HHHh-CCCceEEEe
Confidence 568899999999999 555552 2322 456766554
No 216
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.62 E-value=0.03 Score=45.07 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=10.2
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.|+||+||||.
T Consensus 6 ~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 6 PIIWINGPFGVGKTHT 21 (183)
T ss_dssp CEEEEECCC----CHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3568899999999999
No 217
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.58 E-value=0.021 Score=47.39 Aligned_cols=17 Identities=6% Similarity=0.089 Sum_probs=15.2
Q ss_pred CCCeEEEcCCCCCcceE
Q psy4476 148 RPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtT 164 (266)
..+.+|.||||+||||.
T Consensus 29 g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 35788999999999999
No 218
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.54 E-value=0.034 Score=44.31 Aligned_cols=16 Identities=6% Similarity=-0.097 Sum_probs=14.2
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||||+||||.
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 3568999999999999
No 219
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.54 E-value=0.028 Score=46.18 Aligned_cols=15 Identities=13% Similarity=0.324 Sum_probs=13.8
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||||+||||.
T Consensus 6 ~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQ 20 (213)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 568899999999999
No 220
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.52 E-value=0.03 Score=51.64 Aligned_cols=16 Identities=13% Similarity=0.063 Sum_probs=15.1
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+++|.||||+||||.
T Consensus 62 ~i~~I~GppGsGKSTL 77 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTL 77 (356)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 5899999999999999
No 221
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.51 E-value=0.028 Score=50.44 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=25.4
Q ss_pred CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCC
Q psy4476 148 RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPS 192 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPS 192 (266)
..+++|.|+||+|||+. ...|+ ..... .+.+++...--
T Consensus 68 G~l~li~G~pG~GKTtl----~l~ia--~~~a~-~g~~vl~~slE 105 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAF----ALKQA--KNMSD-NDDVVNLHSLE 105 (315)
T ss_dssp TCEEEEECCTTSSHHHH----HHHHH--HHHHT-TTCEEEEEESS
T ss_pred CcEEEEEeCCCCCHHHH----HHHHH--HHHHH-cCCeEEEEECC
Confidence 36899999999999999 44444 22222 34677766543
No 222
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.50 E-value=0.02 Score=58.34 Aligned_cols=30 Identities=13% Similarity=0.016 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhC----------------CCeEEEcCCCCCcceEe
Q psy4476 136 RSQVYAVKHAIQR----------------PLSLIQGMNQRSNGLHH 165 (266)
Q Consensus 136 ~sQ~~AV~~aL~~----------------~~tLIqGPPGTGKTtTi 165 (266)
+..+++++.++.- +=.|++||||||||...
T Consensus 483 ~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 483 EDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp HHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHH
T ss_pred HHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHH
Confidence 5677777766521 12589999999999883
No 223
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.45 E-value=0.042 Score=55.97 Aligned_cols=29 Identities=10% Similarity=0.077 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhC---CCeEEEcCCCCCcceE
Q psy4476 136 RSQVYAVKHAIQR---PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 136 ~sQ~~AV~~aL~~---~~tLIqGPPGTGKTtT 164 (266)
+.....+..+|.+ +-.+|.||||||||++
T Consensus 176 ~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 176 DEEIRRVIQILLRRTKNNPVLIGEPGVGKTAI 207 (854)
T ss_dssp HHHHHHHHHHHHCSSCCCCEEEECTTSCHHHH
T ss_pred HHHHHHHHHHHhcCCCCceEEEcCCCCCHHHH
Confidence 3455555556643 3569999999999999
No 224
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.45 E-value=0.031 Score=51.48 Aligned_cols=17 Identities=12% Similarity=0.030 Sum_probs=15.7
Q ss_pred CCCeEEEcCCCCCcceE
Q psy4476 148 RPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtT 164 (266)
..+++|.||||+|||+.
T Consensus 63 G~ii~I~G~pGsGKTtL 79 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTL 79 (356)
T ss_dssp TSEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 36899999999999999
No 225
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.44 E-value=0.029 Score=45.32 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=13.6
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||||+||||.
T Consensus 5 ~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQ 19 (196)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 567899999999999
No 226
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.43 E-value=0.03 Score=45.29 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=13.5
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||||+||||.
T Consensus 6 ~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQ 20 (186)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999999
No 227
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.37 E-value=0.026 Score=45.14 Aligned_cols=15 Identities=7% Similarity=0.027 Sum_probs=13.5
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
..+|.|+||+||||+
T Consensus 9 ~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSL 23 (168)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 457899999999999
No 228
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.32 E-value=0.026 Score=45.36 Aligned_cols=16 Identities=6% Similarity=0.204 Sum_probs=14.4
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||||+||||+
T Consensus 9 ~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAV 24 (175)
T ss_dssp EEEEEECSTTSCHHHH
T ss_pred cEEEEEcCCCCCHHHH
Confidence 3678999999999999
No 229
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.29 E-value=0.037 Score=45.66 Aligned_cols=16 Identities=6% Similarity=0.081 Sum_probs=14.6
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||||+||||.
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4789999999999999
No 230
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.28 E-value=0.028 Score=56.22 Aligned_cols=14 Identities=14% Similarity=-0.021 Sum_probs=13.3
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.|++||||||||++
T Consensus 491 ~ll~G~~GtGKT~l 504 (758)
T 1r6b_X 491 FLFAGPTGVGKTEV 504 (758)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 69999999999999
No 231
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.25 E-value=0.036 Score=45.81 Aligned_cols=37 Identities=8% Similarity=0.007 Sum_probs=23.5
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCc--eEecCCC
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKS--NLNHRPS 192 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~k--iLvcAPS 192 (266)
++..|.||+|+||||+ +..++. .+.. .+.+ ++-+.|.
T Consensus 5 ~~i~i~G~sGsGKTTl----~~~L~~--~l~~-~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTL----MEKWVA--AAVR-EGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHH----HHHHHH--HHHH-TTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHH----HHHHHH--hhHh-cCCeeeEEEeCCC
Confidence 4678999999999999 555652 3332 3344 4455554
No 232
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.23 E-value=0.032 Score=46.01 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=13.6
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||||+||||.
T Consensus 22 ~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQ 36 (201)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 567899999999999
No 233
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.20 E-value=0.027 Score=46.76 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=14.8
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||||+||||.
T Consensus 13 ~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5788999999999998
No 234
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.18 E-value=0.024 Score=47.85 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=15.7
Q ss_pred CCCeEEEcCCCCCcceE
Q psy4476 148 RPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtT 164 (266)
..+..|.||||+||||+
T Consensus 30 G~~~~l~GpnGsGKSTL 46 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp TCEEEEECCTTSSHHHH
T ss_pred CcEEEEEeCCCCCHHHH
Confidence 46899999999999999
No 235
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.12 E-value=0.044 Score=44.58 Aligned_cols=17 Identities=18% Similarity=0.217 Sum_probs=15.1
Q ss_pred CCCeEEEcCCCCCcceE
Q psy4476 148 RPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtT 164 (266)
..+.+|.||||+||||.
T Consensus 12 ~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp SCEEEEEECTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 35778999999999999
No 236
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.12 E-value=0.034 Score=45.15 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=14.5
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||||+||||.
T Consensus 10 ~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4678999999999999
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.09 E-value=0.025 Score=46.63 Aligned_cols=14 Identities=14% Similarity=0.064 Sum_probs=13.0
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
..|.||||+||||.
T Consensus 3 i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 3 IIITGEPGVGKTTL 16 (178)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999999
No 238
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.09 E-value=0.039 Score=49.37 Aligned_cols=37 Identities=3% Similarity=-0.058 Sum_probs=23.1
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCceE-ecCCCC
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNL-NHRPSG 193 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiL-vcAPSN 193 (266)
+.+|.||||+||||+ +..+. ..+.. .+.+|+ +.+...
T Consensus 100 vi~i~G~~G~GKTT~----~~~la--~~~~~-~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTT----AGKLA--YFYKK-KGFKVGLVGADVY 137 (297)
T ss_dssp EEEEECSSCSSTTHH----HHHHH--HHHHH-TTCCEEEEECCCS
T ss_pred EEEEECCCCCCHHHH----HHHHH--HHHHH-CCCeEEEEecCCC
Confidence 456789999999999 44444 23333 355665 444433
No 239
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.07 E-value=0.029 Score=46.40 Aligned_cols=15 Identities=7% Similarity=-0.088 Sum_probs=13.3
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+..|.||||+||||+
T Consensus 4 ~i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 356899999999999
No 240
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.97 E-value=0.032 Score=47.83 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=14.3
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
++-+|.||||.||||.
T Consensus 30 kiI~llGpPGsGKgTq 45 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQ 45 (217)
T ss_dssp EEEEEECCTTCCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 5678899999999998
No 241
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=91.96 E-value=0.08 Score=51.66 Aligned_cols=57 Identities=12% Similarity=-0.096 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 133 DLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 133 ~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
.|++.|+..+...-..++.+|.+|.|.|||++ ++.++- +.+...++.+|+++|||-.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~----~a~~~l-~~~~~~~~~~i~~va~t~~ 219 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTV----VAIFLA-HFVCFNKDKAVGILAHKGS 219 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHH----HHHHHH-HHHHTSSSCEEEEEESSHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHH----HHHHHH-HHHHhCCCCeEEEEECCHH
Confidence 68999999887654567899999999999999 443331 2222224568999999986
No 242
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.96 E-value=0.026 Score=46.27 Aligned_cols=16 Identities=13% Similarity=0.019 Sum_probs=14.7
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||+|+||||+
T Consensus 8 ~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSL 23 (205)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred cEEEEECcCCCCHHHH
Confidence 5788999999999999
No 243
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.95 E-value=0.034 Score=44.81 Aligned_cols=15 Identities=13% Similarity=0.290 Sum_probs=13.7
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||||+||||.
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 567899999999998
No 244
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.93 E-value=0.036 Score=44.78 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=13.3
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||||+||||.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 357899999999999
No 245
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.90 E-value=0.027 Score=46.24 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=14.6
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||||+||||+
T Consensus 7 ~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CEEEEECSTTSCHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4678999999999999
No 246
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.89 E-value=0.037 Score=52.33 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=24.2
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCceE-ecCCCC
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNL-NHRPSG 193 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiL-vcAPSN 193 (266)
+.+|.|++|+||||| +..+. +.+.+..++||+ +++...
T Consensus 102 vI~ivG~~GvGKTT~----a~~LA--~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTS----VGKLG--KFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp EEEEECSTTSSHHHH----HHHHH--HHHHHTSCCCEEEEECCCS
T ss_pred EEEEECCCCCCHHHH----HHHHH--HHHHHhcCCeEEEEecCCC
Confidence 455679999999999 55555 334442266766 444443
No 247
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.86 E-value=0.04 Score=51.92 Aligned_cols=40 Identities=10% Similarity=0.008 Sum_probs=26.9
Q ss_pred CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCC
Q psy4476 148 RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSG 193 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN 193 (266)
..+.+|.||||+|||+. +..|+ .......+.+|+...--.
T Consensus 203 G~liiI~G~pG~GKTtl----~l~ia--~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAF----ALNIA--QNVATKTNENVAIFSLEM 242 (454)
T ss_dssp TCEEEEECCTTSCHHHH----HHHHH--HHHHHHSSCCEEEEESSS
T ss_pred CCEEEEECCCCCCHHHH----HHHHH--HHHHHhCCCcEEEEECCC
Confidence 36899999999999999 44444 222222356788766543
No 248
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=91.81 E-value=0.14 Score=51.58 Aligned_cols=58 Identities=9% Similarity=0.039 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHH----hCCCeEEEcCCCCCcceEeCccccccccchhh-hhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAI----QRPLSLIQGMNQRSNGLHHQPGGAGIGNSANT-NRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL----~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~-~~~~~~kiLvcAPSN~ 194 (266)
..|-+.|++||...+ ...=.+|--+.|.|||.+. .+++. ... ......++||.+|...
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~a----i~~i~-~l~~~~~~~~~~LIV~P~sl 297 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQT----VAFIS-WLIFARRQNGPHIIVVPLST 297 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHH----HHHHH-HHHHHHSCCSCEEEECCTTT
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHH----HHHHH-HHHHhcCCCCCEEEEECchH
Confidence 468899999998665 3456789999999999983 33331 121 2223567999999665
No 249
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.81 E-value=0.038 Score=47.96 Aligned_cols=15 Identities=27% Similarity=0.157 Sum_probs=13.7
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||||+||||.
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 468999999999999
No 250
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.80 E-value=0.038 Score=46.82 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=12.4
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
-+|.||||.||+|.
T Consensus 3 Iil~GpPGsGKgTq 16 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQ 16 (206)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 36789999999998
No 251
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.78 E-value=0.037 Score=51.11 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=24.3
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCC
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSG 193 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN 193 (266)
.+++|.||||+|||+. ...++ ....+ .+.+++......
T Consensus 75 ~li~I~G~pGsGKTtl----al~la--~~~~~-~g~~vlyi~~E~ 112 (366)
T 1xp8_A 75 RITEIYGPESGGKTTL----ALAIV--AQAQK-AGGTCAFIDAEH 112 (366)
T ss_dssp SEEEEEESTTSSHHHH----HHHHH--HHHHH-TTCCEEEEESSC
T ss_pred cEEEEEcCCCCChHHH----HHHHH--HHHHH-CCCeEEEEECCC
Confidence 6899999999999999 43444 22222 345666554443
No 252
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.75 E-value=0.04 Score=47.04 Aligned_cols=34 Identities=9% Similarity=0.020 Sum_probs=23.3
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecC
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHR 190 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcA 190 (266)
.+.++.|.||+||||+ +..+.. .+. .+.++++..
T Consensus 15 ~i~~~~GkgGvGKTTl----~~~La~--~l~--~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTL----TGEFGR--YLE--DNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHH----HHHHHH--HHT--TTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHH----HHHHHH--HHH--CCCeEEEEe
Confidence 4678999999999999 555552 233 356766543
No 253
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.62 E-value=0.041 Score=45.33 Aligned_cols=16 Identities=6% Similarity=0.387 Sum_probs=14.3
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||||+||||.
T Consensus 11 ~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CEEEEEESTTSSHHHH
T ss_pred CEEEEEcCCCCCHHHH
Confidence 4568999999999999
No 254
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.53 E-value=0.046 Score=44.47 Aligned_cols=16 Identities=6% Similarity=0.090 Sum_probs=14.2
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.|+||+||||.
T Consensus 14 ~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTI 29 (186)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred cEEEEEcCCCCCHHHH
Confidence 3578899999999999
No 255
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.45 E-value=0.048 Score=46.86 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=26.5
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCccccccc
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGANKLSQG 200 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~arl~~g 200 (266)
.+.+|.||.|+||||.+ ...+. .. ...+.+|++.-|.--.|..++
T Consensus 29 ~l~vitG~MgsGKTT~l----L~~a~--r~-~~~g~kVli~k~~~d~R~ge~ 73 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEEL----IRRVR--RT-QFAKQHAIVFKPCIDNRYSEE 73 (214)
T ss_dssp EEEEEECSTTSCHHHHH----HHHHH--HH-HHTTCCEEEEECC--------
T ss_pred EEEEEECCCCCcHHHHH----HHHHH--HH-HHCCCEEEEEEeccCCcchHH
Confidence 47789999999999993 33332 11 235789999888765666554
No 256
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.45 E-value=0.029 Score=53.46 Aligned_cols=41 Identities=2% Similarity=-0.223 Sum_probs=27.3
Q ss_pred CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 148 RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..+++|.||||+|||+. ...++ .......+.+|+...--..
T Consensus 242 G~l~li~G~pG~GKT~l----al~~a--~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTF----VRQQA--LQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp TCEEEEEESSCHHHHHH----HHHHH--HHHTTTSCCCEEEEESSSC
T ss_pred CeEEEEeecCCCCchHH----HHHHH--HHHHHhcCCcEEEEeccCC
Confidence 36899999999999999 44444 2233212567887665443
No 257
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.44 E-value=0.042 Score=45.31 Aligned_cols=16 Identities=13% Similarity=0.451 Sum_probs=14.3
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||||+||||.
T Consensus 10 ~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CEEEEEESTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3568899999999999
No 258
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.43 E-value=0.031 Score=48.29 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=13.6
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||||+||||+
T Consensus 34 ~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 34 AILLGGQSGAGKTTI 48 (253)
T ss_dssp EEEEESCGGGTTHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 468899999999998
No 259
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.38 E-value=0.046 Score=44.53 Aligned_cols=15 Identities=13% Similarity=-0.073 Sum_probs=13.4
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||||+||||.
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 357899999999999
No 260
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.38 E-value=0.05 Score=51.14 Aligned_cols=40 Identities=10% Similarity=-0.080 Sum_probs=26.6
Q ss_pred CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCC
Q psy4476 148 RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSG 193 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN 193 (266)
..+++|.||||+|||+. ...|+ .......+.+|+...--.
T Consensus 200 G~l~ii~G~pg~GKT~l----al~ia--~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAF----ALTIA--QNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp TCEEEEEECTTSCHHHH----HHHHH--HHHHHTTCCCEEEEESSS
T ss_pred CcEEEEEeCCCCCHHHH----HHHHH--HHHHHhCCCeEEEEECCC
Confidence 36899999999999999 44444 222222356788765544
No 261
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.37 E-value=0.041 Score=55.99 Aligned_cols=15 Identities=13% Similarity=-0.095 Sum_probs=13.7
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
..||.||||||||++
T Consensus 590 ~vLl~Gp~GtGKT~l 604 (854)
T 1qvr_A 590 SFLFLGPTGVGKTEL 604 (854)
T ss_dssp EEEEBSCSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 368999999999999
No 262
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.36 E-value=0.046 Score=47.03 Aligned_cols=15 Identities=13% Similarity=0.215 Sum_probs=13.5
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||||+||||.
T Consensus 31 ~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQ 45 (243)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 468899999999999
No 263
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.36 E-value=0.046 Score=45.76 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=13.5
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||||+||||.
T Consensus 6 ~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQ 20 (220)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999998
No 264
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.31 E-value=0.053 Score=45.45 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=14.2
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||||+||||.
T Consensus 6 ~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 6 LKVMISGAPASGKGTQ 21 (222)
T ss_dssp CCEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4678899999999998
No 265
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.30 E-value=0.034 Score=47.59 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=14.8
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||||+||||.
T Consensus 28 ~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTV 43 (246)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 5789999999999999
No 266
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.24 E-value=0.047 Score=44.92 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=13.6
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||||+||||.
T Consensus 17 ~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 567899999999999
No 267
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.23 E-value=0.049 Score=45.93 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=14.2
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||||+||||.
T Consensus 8 ~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4568899999999999
No 268
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.22 E-value=0.031 Score=46.47 Aligned_cols=16 Identities=6% Similarity=-0.014 Sum_probs=15.1
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||||+||||.
T Consensus 26 ~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 26 AITEVFGEFGSGKTQL 41 (231)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 5899999999999999
No 269
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.19 E-value=0.051 Score=43.12 Aligned_cols=14 Identities=7% Similarity=0.022 Sum_probs=12.8
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
-+|.|+||+||||.
T Consensus 3 I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 3 IYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEESCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 47899999999998
No 270
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.17 E-value=0.044 Score=52.85 Aligned_cols=35 Identities=6% Similarity=0.034 Sum_probs=23.3
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCC
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRP 191 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAP 191 (266)
+.+|.|+||+||||+ ++.++. .+.+ .+.++++.+.
T Consensus 103 vI~ivG~~GvGKTTl----~~kLA~--~l~~-~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTT----CSKLAY--YYQR-KGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHH----HHHHHH--HHHH-TTCCEEEEEE
T ss_pred EEEEECCCCCCHHHH----HHHHHH--HHHh-CCCeEEEEec
Confidence 346779999999999 666662 3333 3566665443
No 271
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.17 E-value=0.047 Score=45.58 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=12.7
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|.||||+||||.
T Consensus 3 I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 3 IILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 47899999999998
No 272
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.12 E-value=0.05 Score=45.96 Aligned_cols=14 Identities=36% Similarity=0.432 Sum_probs=12.9
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|.||||+||||.
T Consensus 3 I~l~G~~GsGKsT~ 16 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQ 16 (223)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999998
No 273
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.09 E-value=0.038 Score=51.36 Aligned_cols=16 Identities=13% Similarity=0.029 Sum_probs=15.0
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||||+||||.
T Consensus 170 ~~i~l~G~~GsGKSTl 185 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTL 185 (377)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5889999999999999
No 274
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.07 E-value=0.034 Score=48.54 Aligned_cols=17 Identities=0% Similarity=0.016 Sum_probs=15.8
Q ss_pred CCCeEEEcCCCCCcceE
Q psy4476 148 RPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtT 164 (266)
..+++|.||||+||||.
T Consensus 30 G~i~~i~G~~GsGKTtl 46 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSML 46 (279)
T ss_dssp TSEEEEEESTTSSHHHH
T ss_pred CCEEEEEcCCCCCHHHH
Confidence 46899999999999999
No 275
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.06 E-value=0.037 Score=45.16 Aligned_cols=17 Identities=12% Similarity=0.069 Sum_probs=15.2
Q ss_pred CCCeEEEcCCCCCcceE
Q psy4476 148 RPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtT 164 (266)
..+.+|.||+|.||||+
T Consensus 5 g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 35789999999999999
No 276
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.05 E-value=0.054 Score=44.32 Aligned_cols=16 Identities=13% Similarity=0.416 Sum_probs=14.1
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||||+||||.
T Consensus 5 ~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred cEEEEEcCCCCCHHHH
Confidence 3568899999999999
No 277
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.97 E-value=0.054 Score=51.21 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=27.0
Q ss_pred CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCC
Q psy4476 148 RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSG 193 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN 193 (266)
..+.+|.|+||+|||+. ...|+ ..... .+.+|+...--.
T Consensus 197 G~liiIaG~pG~GKTtl----al~ia--~~~a~-~g~~vl~fSlEm 235 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAF----ALKQA--KNMSD-NDDVVNLHSLEM 235 (444)
T ss_dssp SCEEEEEECSSSSHHHH----HHHHH--HHHHH-TTCEEEEECSSS
T ss_pred CcEEEEEeCCCCChHHH----HHHHH--HHHHH-cCCEEEEEECCC
Confidence 36899999999999999 44444 22232 356788776544
No 278
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.89 E-value=0.053 Score=49.87 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=21.9
Q ss_pred HHHHHHh--CCCeEEEcCCCCCcceEeCccccccc
Q psy4476 141 AVKHAIQ--RPLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 141 AV~~aL~--~~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
.++..+. ..+.+|.||+|+||||+ +..|+
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTl----L~~l~ 144 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTT----LAAML 144 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHH----HHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHH----HHHHH
Confidence 4444443 35899999999999999 66665
No 279
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.83 E-value=0.055 Score=45.88 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=13.6
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||||+||||.
T Consensus 18 ~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQ 32 (233)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 568899999999998
No 280
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.81 E-value=0.036 Score=56.30 Aligned_cols=15 Identities=20% Similarity=0.067 Sum_probs=13.7
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
..||.||||||||++
T Consensus 240 ~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 240 GILLYGPPGTGKTLI 254 (806)
T ss_dssp EEEECSCTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 369999999999998
No 281
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.79 E-value=0.055 Score=48.62 Aligned_cols=17 Identities=12% Similarity=0.034 Sum_probs=15.7
Q ss_pred CCCeEEEcCCCCCcceE
Q psy4476 148 RPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtT 164 (266)
..+++|.||||+|||+.
T Consensus 107 G~i~~i~G~~GsGKT~l 123 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQL 123 (324)
T ss_dssp TSEEEEEESTTSSHHHH
T ss_pred CcEEEEECCCCCCHhHH
Confidence 36899999999999999
No 282
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.69 E-value=0.05 Score=45.96 Aligned_cols=16 Identities=0% Similarity=-0.076 Sum_probs=10.7
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||+|+||||+
T Consensus 28 ~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTV 43 (231)
T ss_dssp CEEEEECSCC----CH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5778999999999999
No 283
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.67 E-value=0.048 Score=44.60 Aligned_cols=16 Identities=13% Similarity=0.071 Sum_probs=14.5
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||+|.||||+
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4678999999999999
No 284
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.64 E-value=0.058 Score=46.80 Aligned_cols=15 Identities=13% Similarity=0.302 Sum_probs=13.7
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.|+||+||||.
T Consensus 6 lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 6 LIILTGLPGVGKSTF 20 (260)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 568899999999998
No 285
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.64 E-value=0.063 Score=48.13 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=22.8
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecC
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHR 190 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcA 190 (266)
+..|-||.|.||||+ +..|. ..+.. .+.+|++.+
T Consensus 102 vi~lvG~nGsGKTTl----l~~La--g~l~~-~~g~V~l~g 135 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTS----LGKLA--HRLKN-EGTKVLMAA 135 (302)
T ss_dssp EEEEECCTTSCHHHH----HHHHH--HHHHH-TTCCEEEEC
T ss_pred EEEEEcCCCCCHHHH----HHHHH--HHHHH-cCCeEEEEe
Confidence 677999999999999 55554 22222 345666554
No 286
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.60 E-value=0.066 Score=48.08 Aligned_cols=35 Identities=17% Similarity=0.098 Sum_probs=23.0
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecC
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHR 190 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcA 190 (266)
.+..|-||.|.||||+ +..|. ..+. ..+.+|++.+
T Consensus 103 ~vi~lvG~nGsGKTTl----l~~La--gll~-~~~g~V~l~g 137 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTT----IAKLG--RYYQ-NLGKKVMFCA 137 (304)
T ss_dssp SEEEEECSTTSSHHHH----HHHHH--HHHH-TTTCCEEEEC
T ss_pred eEEEEECCCCCcHHHH----HHHHH--HHHH-hcCCEEEEEe
Confidence 4778889999999999 55444 2222 2345666544
No 287
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.56 E-value=0.059 Score=45.21 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=13.3
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||||+||||.
T Consensus 7 ~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 7 NLILIGAPGSGKGTQ 21 (217)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 457899999999998
No 288
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.53 E-value=0.058 Score=49.04 Aligned_cols=38 Identities=11% Similarity=-0.012 Sum_probs=24.2
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceE-ecCCCC
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNL-NHRPSG 193 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiL-vcAPSN 193 (266)
.+..|-||+|.||||+ +..|. ..+.. .+.+|+ ++++..
T Consensus 130 ~vi~lvG~nGaGKTTl----l~~La--g~l~~-~~g~V~l~g~D~~ 168 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTT----IAKLA--NWLKN-HGFSVVIAASDTF 168 (328)
T ss_dssp EEEEEECCTTSSHHHH----HHHHH--HHHHH-TTCCEEEEEECCS
T ss_pred eEEEEECCCCCCHHHH----HHHHH--HHHHh-cCCEEEEEeeccc
Confidence 3778999999999999 55554 22222 344555 444543
No 289
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=90.35 E-value=0.18 Score=55.35 Aligned_cols=60 Identities=12% Similarity=0.035 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHhC-CCeEEEcCCCCCcceEeCccccccccchhhhh---------ccCCceEecCCCCc
Q psy4476 130 NLPDLNRSQVYAVKHAIQR-PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNR---------LRNKSNLNHRPSGA 194 (266)
Q Consensus 130 ~~~~LN~sQ~~AV~~aL~~-~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~---------~~~~kiLvcAPSN~ 194 (266)
....||+.|.+++..|+.. .=.||.-|-|+|||.+. ..+|+. .+.+ ..+.|++..||+=+
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva---~l~il~--~l~~~~~~~~~~~~~~~k~lyiaP~kA 145 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVA---LMCMLR--EIGKHINMDGTINVDDFKIIYIAPMRS 145 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHH---HHHHHH--HHGGGCCTTSSCCTTSCEEEEECSSHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHH---HHHHHH--HHHhhccccccccCCCCEEEEECCHHH
Confidence 4568999999999999974 56899999999999872 112331 1111 13568999999876
No 290
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=90.25 E-value=0.046 Score=45.22 Aligned_cols=16 Identities=6% Similarity=0.144 Sum_probs=14.4
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||+|+||||+
T Consensus 26 ~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTL 41 (200)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4778899999999998
No 291
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=90.08 E-value=0.071 Score=48.57 Aligned_cols=35 Identities=9% Similarity=0.031 Sum_probs=25.4
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecC
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHR 190 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcA 190 (266)
.+.++.|-+|+||||+ .+++. ..+.+ .++|||++-
T Consensus 27 ~i~v~sgKGGvGKTTv----A~~LA--~~lA~-~G~rVLlvD 61 (349)
T 3ug7_A 27 KYIMFGGKGGVGKTTM----SAATG--VYLAE-KGLKVVIVS 61 (349)
T ss_dssp EEEEEECSSSTTHHHH----HHHHH--HHHHH-SSCCEEEEE
T ss_pred EEEEEeCCCCccHHHH----HHHHH--HHHHH-CCCeEEEEe
Confidence 4678889999999999 55555 34444 577888765
No 292
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.08 E-value=0.045 Score=43.74 Aligned_cols=22 Identities=23% Similarity=0.151 Sum_probs=18.7
Q ss_pred CCCeEEEcCCCCCcceEeCccccccc
Q psy4476 148 RPLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
.++++|.||.|+|||+. +.+|.
T Consensus 23 ~g~~~I~G~NGsGKSti----l~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSL----LDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHH----HHHHH
T ss_pred CCeEEEECCCCCCHHHH----HHHHH
Confidence 46899999999999999 66665
No 293
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.04 E-value=0.082 Score=43.61 Aligned_cols=21 Identities=10% Similarity=-0.035 Sum_probs=17.5
Q ss_pred CCeEEEcCCCCCcceEeCccccccc
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
++..|.||+|+||||+ +..++
T Consensus 7 ~~i~i~G~sGsGKTTl----~~~l~ 27 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL----LKKLI 27 (174)
T ss_dssp CEEEEECCTTSCHHHH----HHHHH
T ss_pred eEEEEEeCCCCCHHHH----HHHHH
Confidence 5788999999999999 55555
No 294
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=89.98 E-value=0.044 Score=54.70 Aligned_cols=41 Identities=20% Similarity=0.181 Sum_probs=28.6
Q ss_pred HHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 143 KHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 143 ~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..++.++..++.||+|+|||+.+ +. .+.. ..+.++|+|+-.
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~a-------l~--~l~~--~~~gl~l~PtR~ 190 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYHA-------IQ--KYFS--AKSGVYCGPLKL 190 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHHH-------HH--HHHH--SSSEEEEESSHH
T ss_pred HHhcCCCEEEEEcCCCCCHHHHH-------HH--HHHh--cCCeEEEeCHHH
Confidence 44556778999999999999952 21 1222 245689999876
No 295
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=89.92 E-value=0.075 Score=43.02 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=14.7
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||+|.||||.
T Consensus 10 ei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTF 25 (171)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 4778999999999999
No 296
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.91 E-value=0.072 Score=48.75 Aligned_cols=39 Identities=5% Similarity=-0.106 Sum_probs=26.4
Q ss_pred CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCC
Q psy4476 148 RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSG 193 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN 193 (266)
..+.+|-|+||+|||+. +..|+ ..... .+.+|++...--
T Consensus 46 G~LiiIaG~pG~GKTt~----al~ia--~~~a~-~g~~Vl~fSlEm 84 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSL----MMNMV--LSALN-DDRGVAVFSLEM 84 (338)
T ss_dssp TCEEEEEECTTSCHHHH----HHHHH--HHHHH-TTCEEEEEESSS
T ss_pred CcEEEEEeCCCCCHHHH----HHHHH--HHHHH-cCCeEEEEeCCC
Confidence 36899999999999999 44444 22222 456777665543
No 297
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=89.87 E-value=0.073 Score=43.75 Aligned_cols=15 Identities=7% Similarity=-0.194 Sum_probs=13.3
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
...|.||||+||||.
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 357899999999998
No 298
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=89.77 E-value=0.07 Score=48.80 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=15.1
Q ss_pred CCeEEEcCCCCCcceEe
Q psy4476 149 PLSLIQGMNQRSNGLHH 165 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTi 165 (266)
.+++|.||||+||||..
T Consensus 29 GiteI~G~pGsGKTtL~ 45 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFG 45 (333)
T ss_dssp EEEEEEESSSSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 37899999999999993
No 299
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.73 E-value=0.077 Score=44.21 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=14.0
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||||+||||.
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3567899999999999
No 300
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.64 E-value=0.11 Score=47.60 Aligned_cols=41 Identities=5% Similarity=-0.055 Sum_probs=30.5
Q ss_pred hCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 147 QRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 147 ~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
.++-++|.||+|+|||++ +..++. ... ..+.+|++.=|.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~----~~~~~~--~~~-~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFT----AKMLLL--REY-MQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHH----HHHHHH--HHH-TTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHH----HHHHHH--HHH-HCCCEEEEEeCCcC
Confidence 356789999999999999 555552 222 25678999988876
No 301
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.55 E-value=0.069 Score=43.11 Aligned_cols=15 Identities=7% Similarity=0.120 Sum_probs=13.5
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||||+||||+
T Consensus 7 ~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 7 TVWLTGLSGAGKTTV 21 (179)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 567899999999998
No 302
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.51 E-value=0.088 Score=48.53 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=22.7
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecC
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHR 190 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcA 190 (266)
+..|-||.|.||||+ +..|. ..+.. .+.+|++.+
T Consensus 159 vi~lvG~nGsGKTTl----l~~La--g~l~~-~~G~V~l~g 192 (359)
T 2og2_A 159 VIMIVGVNGGGKTTS----LGKLA--HRLKN-EGTKVLMAA 192 (359)
T ss_dssp EEEEECCTTSCHHHH----HHHHH--HHHHH-TTCCEEEEC
T ss_pred EEEEEcCCCChHHHH----HHHHH--hhccc-cCCEEEEec
Confidence 467899999999999 55554 22222 356776654
No 303
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.49 E-value=0.082 Score=46.27 Aligned_cols=16 Identities=13% Similarity=0.102 Sum_probs=14.0
Q ss_pred CeEEEcCCCCCcceEe
Q psy4476 150 LSLIQGMNQRSNGLHH 165 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTi 165 (266)
+.+|.||||+||||..
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5688999999999983
No 304
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.45 E-value=0.062 Score=43.35 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=18.2
Q ss_pred CCCeEEEcCCCCCcceEeCccccccc
Q psy4476 148 RPLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
..+.+|.||.|+||||+ +.+|.
T Consensus 26 ~g~~~i~G~NGsGKStl----l~ai~ 47 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNI----GDAIL 47 (182)
T ss_dssp SSEEEEEECTTSSHHHH----HHHHH
T ss_pred CCcEEEECCCCCCHHHH----HHHHH
Confidence 45889999999999999 55554
No 305
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.45 E-value=0.075 Score=43.50 Aligned_cols=15 Identities=13% Similarity=0.171 Sum_probs=13.7
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+..|.||||+||||+
T Consensus 4 ~i~i~G~~GsGKst~ 18 (208)
T 3ake_A 4 IVTIDGPSASGKSSV 18 (208)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 567999999999999
No 306
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.41 E-value=0.08 Score=48.77 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=18.4
Q ss_pred CCCeEEEcCCCCCcceEeCccccccc
Q psy4476 148 RPLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
..+.+|.||+|+||||+ +..|+
T Consensus 136 g~~i~ivG~~GsGKTTl----l~~l~ 157 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTT----IASMI 157 (372)
T ss_dssp SEEEEEECSSSSSHHHH----HHHHH
T ss_pred CCEEEEECCCCCCHHHH----HHHHH
Confidence 35889999999999999 56555
No 307
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.36 E-value=0.037 Score=56.24 Aligned_cols=16 Identities=19% Similarity=-0.010 Sum_probs=14.0
Q ss_pred CeEEEcCCCCCcceEe
Q psy4476 150 LSLIQGMNQRSNGLHH 165 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTi 165 (266)
..|+.||||||||+++
T Consensus 513 ~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 513 GVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCBCCTTSSHHHHH
T ss_pred eeEEECCCCCCHHHHH
Confidence 4689999999999993
No 308
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.32 E-value=0.1 Score=45.50 Aligned_cols=17 Identities=12% Similarity=0.007 Sum_probs=15.8
Q ss_pred CCCeEEEcCCCCCcceE
Q psy4476 148 RPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtT 164 (266)
.....|.||||+||||+
T Consensus 48 g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp TCCEEEECSTTSCHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 57889999999999999
No 309
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.20 E-value=0.11 Score=43.98 Aligned_cols=35 Identities=11% Similarity=-0.004 Sum_probs=25.4
Q ss_pred CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEec
Q psy4476 148 RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNH 189 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvc 189 (266)
+...+|.+|||+||||. ..++.. ... ..+.||+++
T Consensus 28 ~g~i~v~tG~GkGKTTa----A~Glal--RA~-g~G~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTA----AFGTAA--RAV-GHGKNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHH----HHHHHH--HHH-HTTCCEEEE
T ss_pred CceEEEECCCCCCHHHH----HHHHHH--HHH-HCCCeEEEE
Confidence 57899999999999999 444431 112 257899888
No 310
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.20 E-value=0.12 Score=42.88 Aligned_cols=15 Identities=13% Similarity=0.195 Sum_probs=13.9
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+..|.||+|+||||+
T Consensus 24 ~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTL 38 (201)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 678999999999999
No 311
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.17 E-value=0.1 Score=44.36 Aligned_cols=40 Identities=13% Similarity=0.244 Sum_probs=25.0
Q ss_pred CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCc-eEecCCCCc
Q psy4476 148 RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKS-NLNHRPSGA 194 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~k-iLvcAPSN~ 194 (266)
..+.+|-||||+||||. +..+.. .+.. .+.+ ++..-|.+.
T Consensus 6 g~~i~~eG~~gsGKsT~----~~~l~~--~l~~-~~~~v~~~~~p~~~ 46 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTN----RDYLAE--RLRE-RGIEVQLTREPGGT 46 (213)
T ss_dssp CEEEEEECSTTSSHHHH----HHHHHH--HHHT-TTCCEEEEESSCSS
T ss_pred ceEEEEEcCCCCCHHHH----HHHHHH--HHHH-cCCCcccccCCCCC
Confidence 35678899999999999 444442 2332 2334 445567654
No 312
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.16 E-value=0.11 Score=57.60 Aligned_cols=46 Identities=13% Similarity=0.037 Sum_probs=31.6
Q ss_pred HHHHHh------CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 142 VKHAIQ------RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 142 V~~aL~------~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
+-.+|. ....+|.||||||||+. ..+++. ...+ .+.+++.....+.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~L----A~ala~--ea~~-~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTL----TLQVIA--AAQR-EGKTCAFIDAEHA 1466 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHH----HHHHHH--HHHT-TTCCEEEECTTSC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHH----HHHHHH--HHHH-cCCcEEEEEcccc
Confidence 555555 46789999999999999 444442 2222 4677777777765
No 313
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.14 E-value=0.085 Score=47.02 Aligned_cols=17 Identities=6% Similarity=0.014 Sum_probs=15.5
Q ss_pred CCeEEEcCCCCCcceEe
Q psy4476 149 PLSLIQGMNQRSNGLHH 165 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTi 165 (266)
.+++|.||||+|||+..
T Consensus 99 ~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 58999999999999993
No 314
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=89.13 E-value=0.056 Score=45.33 Aligned_cols=22 Identities=23% Similarity=0.151 Sum_probs=18.7
Q ss_pred CCCeEEEcCCCCCcceEeCccccccc
Q psy4476 148 RPLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
.++++|.||.|+|||+. +.+|.
T Consensus 23 ~~~~~I~G~NgsGKSti----l~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSL----LDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHH----HHHHH
T ss_pred CCeEEEEcCCCCCHHHH----HHHHH
Confidence 46899999999999999 56665
No 315
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=89.11 E-value=0.21 Score=46.43 Aligned_cols=57 Identities=12% Similarity=-0.096 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 133 DLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 133 ~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
.|.+.|+..+...-.+++.+|..|-+.|||++ ++.++- +......+.+|+++||+-.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l----~a~~~l-~~a~~~~g~~v~~vA~t~~ 219 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTV----VAIFLA-HFVCFNKDKAVGILAHKGS 219 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHH----HHHHHH-HHHHSSSSCEEEEEESSHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHH----HHHHHH-HHHHhCCCCeEEEEeCCHH
Confidence 68999999887654578899999999999999 443331 2222224678999999985
No 316
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=89.00 E-value=0.082 Score=44.18 Aligned_cols=16 Identities=13% Similarity=0.071 Sum_probs=14.2
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
++-+|.||+|+||||.
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3568999999999999
No 317
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=88.89 E-value=0.092 Score=43.38 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=13.8
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+..|.||||+||||.
T Consensus 23 ~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 23 IIGISGVTNSGKTTL 37 (207)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 567999999999999
No 318
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=88.87 E-value=0.097 Score=47.02 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=25.7
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCC
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRP 191 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAP 191 (266)
.+.+..|-+|+||||+ .+.+. ..+.+ .++|||+.-.
T Consensus 15 ~i~v~sgKGGvGKTTv----A~~LA--~~lA~-~G~rVLlvD~ 50 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTI----SAATA--LWMAR-SGKKTLVIST 50 (324)
T ss_dssp EEEEEEESTTSSHHHH----HHHHH--HHHHH-TTCCEEEEEC
T ss_pred EEEEEeCCCCchHHHH----HHHHH--HHHHH-CCCcEEEEeC
Confidence 4678889999999999 55555 33444 5788876543
No 319
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.79 E-value=0.13 Score=44.00 Aligned_cols=16 Identities=6% Similarity=0.056 Sum_probs=14.3
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|-||||+||||.
T Consensus 27 ~~i~i~G~~GsGKsT~ 42 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTV 42 (229)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEEcCCCCCHHHH
Confidence 4678899999999999
No 320
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=88.74 E-value=0.081 Score=44.04 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=14.4
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||+|.||||+
T Consensus 23 ~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTL 38 (208)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3678999999999999
No 321
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=88.65 E-value=0.11 Score=50.37 Aligned_cols=33 Identities=12% Similarity=0.105 Sum_probs=24.7
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEe
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLN 188 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLv 188 (266)
.+.++.|.+|+||||+ .+.+. ..+.+ .++|||+
T Consensus 9 ~i~~~sgkGGvGKTT~----a~~lA--~~lA~-~G~rVLl 41 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSI----SCATA--IRLAE-QGKRVLL 41 (589)
T ss_dssp SEEEEECSTTSSHHHH----HHHHH--HHHHH-TTCCEEE
T ss_pred EEEEEeCCCcCHHHHH----HHHHH--HHHHH-CCCcEEE
Confidence 5778899999999999 55555 34444 5778887
No 322
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.58 E-value=0.14 Score=44.41 Aligned_cols=40 Identities=10% Similarity=0.193 Sum_probs=26.2
Q ss_pred CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCc--eEecCCCCc
Q psy4476 148 RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKS--NLNHRPSGA 194 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~k--iLvcAPSN~ 194 (266)
..+.+|-||||+||||. +..+.. .+.. .+.+ ++...|++.
T Consensus 27 ~~~i~~eG~~GsGKsT~----~~~l~~--~l~~-~~~~~~~~~rep~~t 68 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTA----IQVVVE--TLQQ-NGIDHITRTREPGGT 68 (236)
T ss_dssp CCEEEEEESTTSCHHHH----HHHHHH--HHHH-TTCCCEEEEESSCSS
T ss_pred CeEEEEECCCCCCHHHH----HHHHHH--HHHh-cCCCeeeeecCCCCC
Confidence 45778899999999999 554442 2332 2333 456678765
No 323
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.51 E-value=0.089 Score=43.68 Aligned_cols=16 Identities=6% Similarity=0.054 Sum_probs=14.8
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||+|.||||+
T Consensus 5 ~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTL 20 (198)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5788999999999999
No 324
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=88.47 E-value=0.11 Score=43.35 Aligned_cols=16 Identities=6% Similarity=0.106 Sum_probs=14.4
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||||+||||.
T Consensus 26 ~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTL 41 (211)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4678899999999998
No 325
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=88.38 E-value=0.091 Score=45.15 Aligned_cols=15 Identities=13% Similarity=0.042 Sum_probs=13.6
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+-.|.||||+||||+
T Consensus 24 iI~I~G~~GSGKST~ 38 (252)
T 1uj2_A 24 LIGVSGGTASGKSSV 38 (252)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999999
No 326
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.34 E-value=0.094 Score=43.70 Aligned_cols=16 Identities=6% Similarity=-0.035 Sum_probs=14.3
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||+|.||||+
T Consensus 2 ~~i~i~G~nG~GKTTl 17 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTL 17 (189)
T ss_dssp CCEEEESCCSSCHHHH
T ss_pred CEEEEECCCCChHHHH
Confidence 3578999999999999
No 327
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.34 E-value=0.092 Score=42.78 Aligned_cols=15 Identities=13% Similarity=-0.013 Sum_probs=13.5
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+..|.||||+||||+
T Consensus 10 ~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 10 IIGITGNIGSGKSTV 24 (203)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999999
No 328
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=88.30 E-value=0.12 Score=49.90 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=24.6
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCceEec-CCCC
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNH-RPSG 193 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvc-APSN 193 (266)
+..|-||.|.||||+ +..|. ..+. ..+.+|++. +...
T Consensus 295 VI~LVGpNGSGKTTL----l~~LA--gll~-~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 295 VILMVGVNGVGKTTT----IGKLA--RQFE-QQGKSVMLAAGDTF 332 (503)
T ss_dssp EEEEECCTTSSHHHH----HHHHH--HHHH-HTTCCEEEECCCTT
T ss_pred EEEEECCCcccHHHH----HHHHH--HHhh-hcCCeEEEecCccc
Confidence 567899999999999 55554 2222 245677775 4443
No 329
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=88.28 E-value=0.11 Score=47.04 Aligned_cols=16 Identities=6% Similarity=-0.043 Sum_probs=15.1
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+++|.||||+|||+.
T Consensus 123 ~i~~I~G~~GsGKTtl 138 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQL 138 (343)
T ss_dssp EEEEEECCTTCTHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5899999999999999
No 330
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.28 E-value=0.11 Score=45.42 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=18.1
Q ss_pred CCCeEEEcCCCCCcceEeCccccccc
Q psy4476 148 RPLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
..+.+|.||.|.||||+ +..|.
T Consensus 25 g~~v~i~Gp~GsGKSTl----l~~l~ 46 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTT----IASMI 46 (261)
T ss_dssp SEEEEEECSTTCSHHHH----HHHHH
T ss_pred CCEEEEECCCCccHHHH----HHHHH
Confidence 35889999999999999 55554
No 331
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.27 E-value=0.11 Score=46.16 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=21.7
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEec
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNH 189 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvc 189 (266)
.+..|.||+|.||||+ +..+. ..+.. .+.+|++.
T Consensus 99 ~~i~i~g~~G~GKTT~----~~~la--~~~~~-~~~~v~l~ 132 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTT----AAKLA--LYYKG-KGRRPLLV 132 (295)
T ss_dssp EEEEEECCTTTTHHHH----HHHHH--HHHHH-TTCCEEEE
T ss_pred eEEEEECCCCCCHHHH----HHHHH--HHHHH-cCCeEEEe
Confidence 3556679999999999 44444 23333 35666654
No 332
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.23 E-value=0.095 Score=43.37 Aligned_cols=33 Identities=12% Similarity=-0.077 Sum_probs=22.0
Q ss_pred HHHHHHHHHHh---CCCeEEEcCCCCCcceEeCccccccc
Q psy4476 137 SQVYAVKHAIQ---RPLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 137 sQ~~AV~~aL~---~~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
.+.+.+...+. .+..+|.|+||+||||+ +..++
T Consensus 16 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl----~~~l~ 51 (221)
T 2wsm_A 16 RLAEKNREALRESGTVAVNIMGAIGSGKTLL----IERTI 51 (221)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECTTSCHHHH----HHHHH
T ss_pred HHHHHHHHhhcccCceEEEEEcCCCCCHHHH----HHHHH
Confidence 34444444442 24678899999999999 55555
No 333
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=88.14 E-value=0.11 Score=47.42 Aligned_cols=16 Identities=6% Similarity=-0.014 Sum_probs=15.2
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.++.|.||||+||||.
T Consensus 132 ~i~~I~G~~GsGKTTL 147 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQL 147 (349)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5899999999999999
No 334
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=88.12 E-value=0.19 Score=48.13 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHh-----CCCeEEEcCCCCCcceE
Q psy4476 136 RSQVYAVKHAIQ-----RPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 136 ~sQ~~AV~~aL~-----~~~tLIqGPPGTGKTtT 164 (266)
+...+.+..+|. .++.+|+||+|.||||.
T Consensus 130 ~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtL 163 (591)
T 1z6t_A 130 KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVL 163 (591)
T ss_dssp HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHH
T ss_pred HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHH
Confidence 556777888885 35789999999999999
No 335
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.92 E-value=0.1 Score=44.60 Aligned_cols=17 Identities=18% Similarity=-0.007 Sum_probs=14.8
Q ss_pred CCeEEEcCCCCCcceEe
Q psy4476 149 PLSLIQGMNQRSNGLHH 165 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTi 165 (266)
...+|.||+|+|||++.
T Consensus 35 ~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETA 51 (205)
T ss_dssp EEEEEECCCTTTTHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45789999999999994
No 336
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=87.72 E-value=0.2 Score=49.35 Aligned_cols=57 Identities=12% Similarity=-0.052 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHh--------C-CCeEEEcCCCCCcceEeCccccccccchhhhhc-----cCCceEecCCCCc
Q psy4476 133 DLNRSQVYAVKHAIQ--------R-PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRL-----RNKSNLNHRPSGA 194 (266)
Q Consensus 133 ~LN~sQ~~AV~~aL~--------~-~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~-----~~~kiLvcAPSN~ 194 (266)
.|=+.|++||...+. + .=.++--+.|+|||.++ .+++. ..+... ...++||++|+..
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~----i~~i~-~l~~~~~~~~p~~~~~LiV~P~sl 125 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQC----ITLIW-TLLKQSPDCKPEIDKVIVVSPSSL 125 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHH----HHHHH-HHHHCCTTSSCSCSCEEEEECHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHH----HHHHH-HHHHhCccccCCCCcEEEEecHHH
Confidence 577999999998763 2 23688889999999994 33331 111111 1356999999865
No 337
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=87.55 E-value=0.13 Score=46.68 Aligned_cols=35 Identities=9% Similarity=-0.078 Sum_probs=22.9
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecC
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHR 190 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcA 190 (266)
.+..|.||||.||||+ +..|.. .+. ..+.+|.+.+
T Consensus 56 ~~v~i~G~~GaGKSTL----l~~l~g--~~~-~~~g~v~i~~ 90 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTT----IDALGS--LLT-AAGHKVAVLA 90 (337)
T ss_dssp EEEEEECCTTSCHHHH----HHHHHH--HHH-HTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHH----HHHHHH--hhh-hCCCEEEEEE
Confidence 4788999999999999 555552 221 1245565544
No 338
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=87.30 E-value=0.12 Score=45.60 Aligned_cols=15 Identities=7% Similarity=0.100 Sum_probs=13.7
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+..|.||||+||||+
T Consensus 77 iI~I~G~~GSGKSTv 91 (281)
T 2f6r_A 77 VLGLTGISGSGKSSV 91 (281)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 568899999999999
No 339
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=87.24 E-value=0.14 Score=48.25 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=23.0
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCceEe-cCCCC
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLN-HRPSG 193 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLv-cAPSN 193 (266)
+.+|.||+|+||||+ +..+. ..+.. .+.+|++ ++...
T Consensus 100 vi~i~G~~GsGKTT~----~~~LA--~~l~~-~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTT----AAKLA--LYYKG-KGRRPLLVAADTQ 137 (425)
T ss_dssp EEEEECCTTSSHHHH----HHHHH--HHHHT-TTCCEEEEECCSS
T ss_pred EEEEECCCCCCHHHH----HHHHH--HHHHH-cCCeEEEeecccc
Confidence 456779999999999 45444 23333 3556654 44433
No 340
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=86.93 E-value=0.15 Score=46.46 Aligned_cols=21 Identities=10% Similarity=-0.115 Sum_probs=17.3
Q ss_pred CCeEEEcCCCCCcceEeCccccccc
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
.+..|.||||.||||+ +..++
T Consensus 75 ~~v~lvG~pgaGKSTL----ln~L~ 95 (349)
T 2www_A 75 FRVGLSGPPGAGKSTF----IEYFG 95 (349)
T ss_dssp EEEEEECCTTSSHHHH----HHHHH
T ss_pred eEEEEEcCCCCCHHHH----HHHHH
Confidence 3568899999999999 66665
No 341
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=86.93 E-value=0.11 Score=43.89 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=15.3
Q ss_pred CCCeEEEcCCCCCcceE
Q psy4476 148 RPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtT 164 (266)
..+.+|.||+|+||||.
T Consensus 19 g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CCEEEEECcCCCCHHHH
Confidence 45788999999999999
No 342
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=86.88 E-value=0.4 Score=43.28 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=23.0
Q ss_pred HHHHHHHHh-CCCeEEEcCCCCCcceEeCccccccc
Q psy4476 139 VYAVKHAIQ-RPLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 139 ~~AV~~aL~-~~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
.+-+...+. ..+.+|.||.|+||||+ +..|.
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTl----l~~l~ 192 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTY----IKSIM 192 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHH----HHHGG
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHH----HHHHh
Confidence 344555554 57999999999999999 55555
No 343
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=86.88 E-value=0.13 Score=42.97 Aligned_cols=15 Identities=7% Similarity=-0.037 Sum_probs=13.4
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+-.|.||||+||||+
T Consensus 14 iIgltG~~GSGKSTv 28 (192)
T 2grj_A 14 VIGVTGKIGTGKSTV 28 (192)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 457899999999999
No 344
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=86.85 E-value=0.16 Score=42.30 Aligned_cols=15 Identities=7% Similarity=0.020 Sum_probs=13.7
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+..|.||||+||||.
T Consensus 6 ~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 6 IVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 567899999999998
No 345
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=86.79 E-value=0.2 Score=43.13 Aligned_cols=40 Identities=10% Similarity=0.194 Sum_probs=21.9
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhcc---CCc-eEecCCCCc
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLR---NKS-NLNHRPSGA 194 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~---~~k-iLvcAPSN~ 194 (266)
.+.+|-||||+||||. +..+.. .+.... +.+ ++...|.+.
T Consensus 26 ~~I~~eG~~GsGKsT~----~~~l~~--~l~~~~~~~g~~v~~~rep~~t 69 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTH----LQWFCD--RLQERLGPAGRHVVVTREPGGT 69 (227)
T ss_dssp CEEEEECCC---CHHH----HHHHHH--HHHHHHGGGTCCEEEEESSSSS
T ss_pred eEEEEECCCCCCHHHH----HHHHHH--HHHhhccccceeeeeecCCCCC
Confidence 4678899999999999 554442 222210 344 445667654
No 346
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=86.72 E-value=0.16 Score=47.11 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=28.8
Q ss_pred CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 148 RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
..-.+|.||+|+|||++ +..++. .+.+ .+.+++|.=|-+-
T Consensus 53 ~~h~~i~G~tGsGKs~~----~~~li~--~~~~-~g~~viv~Dpkge 92 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVL----LRELAY--TGLL-RGDRMVIVDPNGD 92 (437)
T ss_dssp GGCEEEEECTTSSHHHH----HHHHHH--HHHH-TTCEEEEEEETTH
T ss_pred cceEEEECCCCCCHHHH----HHHHHH--HHHH-CCCcEEEEeCCCc
Confidence 35689999999999999 444552 2222 4568888888775
No 347
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=86.71 E-value=0.18 Score=45.85 Aligned_cols=37 Identities=8% Similarity=0.074 Sum_probs=25.5
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCC
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPS 192 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPS 192 (266)
.+.++.|-+|+||||+ .+.+. ..+.+ .++|||+.--.
T Consensus 17 ~i~~~sgkGGvGKTt~----a~~lA--~~la~-~g~~vllid~D 53 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTT----SCSLA--IQLAK-VRRSVLLLSTD 53 (334)
T ss_dssp CEEEEECSTTSSHHHH----HHHHH--HHHTT-SSSCEEEEECC
T ss_pred EEEEEeCCCCccHHHH----HHHHH--HHHHh-CCCcEEEEECC
Confidence 5778899999999999 44444 23444 56787765433
No 348
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.47 E-value=0.16 Score=47.43 Aligned_cols=18 Identities=6% Similarity=0.016 Sum_probs=16.1
Q ss_pred CCCeEEEcCCCCCcceEe
Q psy4476 148 RPLSLIQGMNQRSNGLHH 165 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTi 165 (266)
..+++|.||||+||||..
T Consensus 178 Gei~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLC 195 (400)
T ss_dssp TSEEEEEESTTSSHHHHH
T ss_pred CcEEEEEcCCCCChHHHH
Confidence 368999999999999993
No 349
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=86.39 E-value=0.2 Score=48.06 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=25.4
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
.+++|.||||+||||. +..+. ..... .+.+++...+-+.
T Consensus 282 ~i~~i~G~~GsGKSTL----l~~l~--g~~~~-~G~~vi~~~~ee~ 320 (525)
T 1tf7_A 282 SIILATGATGTGKTLL----VSRFV--ENACA-NKERAILFAYEES 320 (525)
T ss_dssp CEEEEEECTTSSHHHH----HHHHH--HHHHT-TTCCEEEEESSSC
T ss_pred cEEEEEeCCCCCHHHH----HHHHH--HHHHh-CCCCEEEEEEeCC
Confidence 6899999999999999 44444 22222 3456655555443
No 350
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=86.34 E-value=0.17 Score=57.67 Aligned_cols=26 Identities=4% Similarity=-0.022 Sum_probs=19.3
Q ss_pred HHHHHHHh-CCCeEEEcCCCCCcceEe
Q psy4476 140 YAVKHAIQ-RPLSLIQGMNQRSNGLHH 165 (266)
Q Consensus 140 ~AV~~aL~-~~~tLIqGPPGTGKTtTi 165 (266)
.-+..++. ..-.|+.||||||||+++
T Consensus 1258 ~ll~~~l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1258 KIFYDLLNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHHHHHHHTCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHCCCeEEEECCCCCCHHHHH
Confidence 34455555 456689999999999983
No 351
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=86.21 E-value=0.12 Score=42.74 Aligned_cols=15 Identities=13% Similarity=-0.008 Sum_probs=13.8
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+..|.||+|+||||+
T Consensus 8 ~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 8 VIGIAGGTASGKTTL 22 (211)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 567999999999999
No 352
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=86.10 E-value=0.074 Score=43.82 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=13.5
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||||+||||.
T Consensus 2 ~I~i~G~~GsGKsTl 16 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTL 16 (214)
T ss_dssp EEEEEEEEEEEHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 457899999999999
No 353
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=86.06 E-value=0.14 Score=47.83 Aligned_cols=17 Identities=6% Similarity=0.071 Sum_probs=14.6
Q ss_pred CCeEEEcCCCCCcceEe
Q psy4476 149 PLSLIQGMNQRSNGLHH 165 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTi 165 (266)
.+.+|.||||+||||..
T Consensus 259 ~lIil~G~pGSGKSTla 275 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFI 275 (416)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46778999999999993
No 354
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=86.01 E-value=0.18 Score=45.69 Aligned_cols=21 Identities=10% Similarity=-0.005 Sum_probs=16.6
Q ss_pred CCeEEEcCCCCCcceEeCccccccc
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
.+..|.||||.||||+ +..+.
T Consensus 57 ~~i~i~G~~g~GKSTl----~~~l~ 77 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTF----LEAFG 77 (341)
T ss_dssp EEEEEEECTTSCHHHH----HHHHH
T ss_pred EEEEEEcCCCCCHHHH----HHHHH
Confidence 4567899999999999 55544
No 355
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=85.96 E-value=0.15 Score=43.00 Aligned_cols=17 Identities=18% Similarity=0.006 Sum_probs=15.5
Q ss_pred CCCeEEEcCCCCCcceE
Q psy4476 148 RPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtT 164 (266)
..+..|.||.|.||||+
T Consensus 23 G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTL 39 (218)
T ss_dssp CCCEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 36889999999999999
No 356
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=85.94 E-value=0.15 Score=42.34 Aligned_cols=30 Identities=10% Similarity=0.001 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHh-C--CCeEEEcCCCCCcceE
Q psy4476 135 NRSQVYAVKHAIQ-R--PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 135 N~sQ~~AV~~aL~-~--~~tLIqGPPGTGKTtT 164 (266)
|+.|.+.++..+. . +..+|.|+||+||||.
T Consensus 22 ~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl 54 (226)
T 2hf9_A 22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLL 54 (226)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHH
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHH
Confidence 3445555555543 2 3456779999999999
No 357
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=85.87 E-value=0.16 Score=44.04 Aligned_cols=15 Identities=7% Similarity=0.087 Sum_probs=13.8
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+..|.||||+||||+
T Consensus 11 ~i~i~G~~GsGKsTl 25 (233)
T 3r20_A 11 VVAVDGPAGTGKSSV 25 (233)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999998
No 358
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=85.76 E-value=0.21 Score=44.78 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=15.0
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
++++|.||.|.||||.
T Consensus 5 ~v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEEESSSSSCHHH
T ss_pred cEEEEEecCCCCHHHH
Confidence 5789999999999999
No 359
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=85.71 E-value=0.21 Score=44.98 Aligned_cols=35 Identities=9% Similarity=0.046 Sum_probs=25.2
Q ss_pred CCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEec
Q psy4476 148 RPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNH 189 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvc 189 (266)
+.+.++.|-+|+||||+ .+.+. ..+.+ .++|||+.
T Consensus 19 ~~i~v~sgkGGvGKTTv----a~~LA--~~lA~-~G~rVllv 53 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTT----SCSLA--IQMSK-VRSSVLLI 53 (329)
T ss_dssp CCEEEEECSSSSSHHHH----HHHHH--HHHHT-SSSCEEEE
T ss_pred CEEEEEeCCCCCcHHHH----HHHHH--HHHHH-CCCeEEEE
Confidence 35778899999999999 55554 34444 57888874
No 360
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=85.66 E-value=0.23 Score=45.76 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCeEEEcCCCCCcceE
Q psy4476 140 YAVKHAIQRPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 140 ~AV~~aL~~~~tLIqGPPGTGKTtT 164 (266)
+.+...+...++.|-||||.||||+
T Consensus 207 ~~L~~~~~G~~~~lvG~sG~GKSTL 231 (358)
T 2rcn_A 207 KPLEEALTGRISIFAGQSGVGKSSL 231 (358)
T ss_dssp HHHHHHHTTSEEEEECCTTSSHHHH
T ss_pred HHHHHhcCCCEEEEECCCCccHHHH
Confidence 4455556678899999999999999
No 361
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=85.65 E-value=0.2 Score=43.23 Aligned_cols=45 Identities=7% Similarity=-0.042 Sum_probs=26.3
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCccccccc
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGANKLSQG 200 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~arl~~g 200 (266)
.+.+|.||.|.||||.+ +. .+. ... ..+.++++..|.--.|..++
T Consensus 29 ~I~vitG~M~sGKTT~L---lr-~~~--r~~-~~g~kvli~kp~~D~R~~~~ 73 (219)
T 3e2i_A 29 WIECITGSMFSGKSEEL---IR-RLR--RGI-YAKQKVVVFKPAIDDRYHKE 73 (219)
T ss_dssp EEEEEEECTTSCHHHHH---HH-HHH--HHH-HTTCCEEEEEEC--------
T ss_pred eEEEEECCCCCCHHHHH---HH-HHH--HHH-HcCCceEEEEeccCCcchhh
Confidence 57899999999999873 22 221 122 24678999999777777664
No 362
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=85.63 E-value=0.21 Score=43.74 Aligned_cols=34 Identities=9% Similarity=-0.008 Sum_probs=22.4
Q ss_pred CCeEEEcC-CCCCcceEeCccccccccchhhhhccCCceEec
Q psy4476 149 PLSLIQGM-NQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNH 189 (266)
Q Consensus 149 ~~tLIqGP-PGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvc 189 (266)
++..|.|+ ||.||||+ ...+. ..+.+ .++|||+.
T Consensus 83 kvI~vts~kgG~GKTt~----a~nLA--~~lA~-~G~rVLLI 117 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTI----AANLA--VAYAQ-AGYKTLIV 117 (271)
T ss_dssp CEEEEECSSTTSSHHHH----HHHHH--HHHHH-TTCCEEEE
T ss_pred eEEEEECCCCCCcHHHH----HHHHH--HHHHh-CCCeEEEE
Confidence 45667776 99999999 44444 23444 56787753
No 363
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=85.55 E-value=0.27 Score=44.96 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=21.2
Q ss_pred HHHHHhC-CCeEEEcCCCCCcceEeCccccccc
Q psy4476 142 VKHAIQR-PLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 142 V~~aL~~-~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
+..++.. .+.+|.||.|+||||+ +..|.
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTl----l~~l~ 196 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTL----MKALM 196 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHH----HHHHH
T ss_pred HHHHHhcCCEEEEECCCCCCHHHH----HHHHH
Confidence 4445544 6899999999999999 55544
No 364
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=85.38 E-value=0.19 Score=41.59 Aligned_cols=15 Identities=7% Similarity=-0.022 Sum_probs=13.9
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+..|.||||+||||+
T Consensus 5 ~i~i~G~~gsGkst~ 19 (219)
T 2h92_A 5 NIALDGPAAAGKSTI 19 (219)
T ss_dssp CEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 568999999999999
No 365
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=85.09 E-value=0.2 Score=43.36 Aligned_cols=13 Identities=15% Similarity=0.388 Sum_probs=11.9
Q ss_pred EEEcCCCCCcceE
Q psy4476 152 LIQGMNQRSNGLH 164 (266)
Q Consensus 152 LIqGPPGTGKTtT 164 (266)
-|.||||+||||.
T Consensus 12 ~~~G~pGsGKsT~ 24 (230)
T 3gmt_A 12 ILLGAPGAGKGTQ 24 (230)
T ss_dssp EEECCTTSCHHHH
T ss_pred eeECCCCCCHHHH
Confidence 4789999999998
No 366
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=85.03 E-value=0.21 Score=42.26 Aligned_cols=44 Identities=9% Similarity=0.035 Sum_probs=29.8
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCcccccc
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGANKLSQ 199 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~arl~~ 199 (266)
.+.+|.||.|.||||.+ +..+-+ + . ..+.+|++..|.--.|+.+
T Consensus 21 ~l~fiyG~MgsGKTt~L---l~~i~n-~--~-~~~~kvl~~kp~~D~R~~~ 64 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTEL---MRRVRR-F--Q-IAQYKCLVIKYAKDTRYSS 64 (195)
T ss_dssp EEEEEEECTTSCHHHHH---HHHHHH-H--H-HTTCCEEEEEETTCCCGGG
T ss_pred EEEEEECCCCCcHHHHH---HHHHHH-H--H-HcCCeEEEEccccCccchh
Confidence 58899999999999873 333221 2 2 2468999998875445444
No 367
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=85.01 E-value=0.053 Score=54.07 Aligned_cols=38 Identities=13% Similarity=0.064 Sum_probs=27.1
Q ss_pred hCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 147 QRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 147 ~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
.++..++++|.|+|||+.. . + ..+. ++.++|+.+|+-.
T Consensus 231 ~~~~vlv~ApTGSGKT~a~----~--l--~ll~--~g~~vLVl~PTRe 268 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKV----P--A--AYAA--QGYKVLVLNPSVA 268 (666)
T ss_dssp SCEEEEEECCTTSCTTTHH----H--H--HHHH--TTCCEEEEESCHH
T ss_pred cCCeEEEEeCCchhHHHHH----H--H--HHHH--CCCeEEEEcchHH
Confidence 3457899999999999762 2 1 1122 4569999999965
No 368
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=84.97 E-value=0.2 Score=47.17 Aligned_cols=16 Identities=6% Similarity=-0.074 Sum_probs=14.3
Q ss_pred CeEEEcCCCCCcceEe
Q psy4476 150 LSLIQGMNQRSNGLHH 165 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTi 165 (266)
-.+|.||||||||+.+
T Consensus 177 R~lIfg~~g~GKT~Ll 192 (427)
T 3l0o_A 177 RGMIVAPPKAGKTTIL 192 (427)
T ss_dssp EEEEEECTTCCHHHHH
T ss_pred eEEEecCCCCChhHHH
Confidence 4699999999999994
No 369
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=84.88 E-value=0.23 Score=45.33 Aligned_cols=36 Identities=14% Similarity=0.049 Sum_probs=25.4
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhh-ccCCceEecC
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNR-LRNKSNLNHR 190 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~-~~~~kiLvcA 190 (266)
.+.+..|-+|+||||+ .+.+. ..+.+ ..++|||+.-
T Consensus 19 ~i~v~sgKGGvGKTTv----aanLA--~~lA~~~~G~rVLLvD 55 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTS----SCSIA--IQMALSQPNKQFLLIS 55 (354)
T ss_dssp CEEEEEESTTSSHHHH----HHHHH--HHHHHHCTTSCEEEEE
T ss_pred EEEEEeCCCCCcHHHH----HHHHH--HHHHHhcCCCeEEEEE
Confidence 5678889999999999 55555 34441 3578888753
No 370
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=84.87 E-value=0.16 Score=42.20 Aligned_cols=17 Identities=6% Similarity=0.098 Sum_probs=15.7
Q ss_pred CCCeEEEcCCCCCcceE
Q psy4476 148 RPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtT 164 (266)
..+..|-||.|.||||+
T Consensus 20 Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 46899999999999999
No 371
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=84.82 E-value=0.16 Score=43.15 Aligned_cols=16 Identities=6% Similarity=0.071 Sum_probs=15.0
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||.|.||||.
T Consensus 17 ~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSL 32 (219)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 5889999999999999
No 372
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=84.77 E-value=0.47 Score=46.96 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHH---hCC--CeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 133 DLNRSQVYAVKHAI---QRP--LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 133 ~LN~sQ~~AV~~aL---~~~--~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
.++..|..|++..+ ... ..++.|.+|+|||.| ++.++. . .++++||.||+..
T Consensus 8 ~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~----~a~~~~--~----~~~~~lvv~~~~~ 64 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVT----MAKVIE--A----LGRPALVLAPNKI 64 (664)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHH----HHHHHH--H----HTCCEEEEESSHH
T ss_pred CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHH----HHHHHH--H----hCCCEEEEecCHH
Confidence 67788998888654 333 457899999999999 554441 1 2457999999886
No 373
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=84.66 E-value=0.24 Score=45.24 Aligned_cols=37 Identities=8% Similarity=0.029 Sum_probs=25.5
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhh-ccCCceEecCC
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNR-LRNKSNLNHRP 191 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~-~~~~kiLvcAP 191 (266)
.+.++.|-+|+||||+ .+.+. ..+.. ..++|||+.--
T Consensus 19 ~i~~~~gkGGvGKTt~----a~~lA--~~la~~~~g~~vllid~ 56 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTT----SSSVA--VQLALAQPNEQFLLIST 56 (348)
T ss_dssp SEEEEECSTTSSHHHH----HHHHH--HHHHHHCTTSCEEEEEC
T ss_pred EEEEEeCCCCCcHHHH----HHHHH--HHHHHhcCCCeEEEEEC
Confidence 6888999999999999 45444 23441 35678776543
No 374
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=84.65 E-value=0.23 Score=45.16 Aligned_cols=16 Identities=6% Similarity=-0.037 Sum_probs=14.3
Q ss_pred CeEEEcCCCCCcceEe
Q psy4476 150 LSLIQGMNQRSNGLHH 165 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTi 165 (266)
+.+|.||||+||||..
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999984
No 375
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=84.55 E-value=0.26 Score=43.77 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCCeEEEcCCCCCcceE
Q psy4476 139 VYAVKHAIQRPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 139 ~~AV~~aL~~~~tLIqGPPGTGKTtT 164 (266)
.+.+...+...+..|-||+|.||||+
T Consensus 160 v~~lf~~l~geiv~l~G~sG~GKSTl 185 (301)
T 1u0l_A 160 IEELKEYLKGKISTMAGLSGVGKSSL 185 (301)
T ss_dssp HHHHHHHHSSSEEEEECSTTSSHHHH
T ss_pred HHHHHHHhcCCeEEEECCCCCcHHHH
Confidence 44555667788999999999999999
No 376
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=84.51 E-value=0.27 Score=40.74 Aligned_cols=35 Identities=3% Similarity=0.003 Sum_probs=23.8
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCC
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRP 191 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAP 191 (266)
+++.-+-+|+||||+ ...+. ..+.+ .+.||++.=|
T Consensus 4 I~v~s~kgGvGKTt~----a~nLa--~~la~-~G~rVll~dp 38 (224)
T 1byi_A 4 YFVTGTDTEVGKTVA----SCALL--QAAKA-AGYRTAGYKP 38 (224)
T ss_dssp EEEEESSTTSCHHHH----HHHHH--HHHHH-TTCCEEEECS
T ss_pred EEEEECCCCCCHHHH----HHHHH--HHHHH-CCCCEEEEcc
Confidence 344455699999999 44454 34444 5789998766
No 377
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=84.44 E-value=0.25 Score=43.91 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=22.7
Q ss_pred CCeEEEcC-CCCCcceEeCccccccccchhhhhccCCceEec
Q psy4476 149 PLSLIQGM-NQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNH 189 (266)
Q Consensus 149 ~~tLIqGP-PGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvc 189 (266)
++..|.|+ ||.||||+ ...+. ..+.+ .++|||+.
T Consensus 105 kvI~vts~kgG~GKTtv----a~nLA--~~lA~-~G~rVLLI 139 (299)
T 3cio_A 105 NILMITGATPDSGKTFV----SSTLA--AVIAQ-SDQKVLFI 139 (299)
T ss_dssp CEEEEEESSSSSCHHHH----HHHHH--HHHHH-TTCCEEEE
T ss_pred eEEEEECCCCCCChHHH----HHHHH--HHHHh-CCCcEEEE
Confidence 45677776 99999999 44444 23444 56787764
No 378
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=84.06 E-value=0.31 Score=44.10 Aligned_cols=15 Identities=13% Similarity=0.029 Sum_probs=14.0
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.-|.||+|.||||+
T Consensus 94 iigI~GpsGSGKSTl 108 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTT 108 (321)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 678899999999999
No 379
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=84.05 E-value=0.25 Score=43.93 Aligned_cols=26 Identities=4% Similarity=0.079 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCCeEEEcCCCCCcceE
Q psy4476 139 VYAVKHAIQRPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 139 ~~AV~~aL~~~~tLIqGPPGTGKTtT 164 (266)
.+.+...+...+..|-||+|.||||+
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTL 181 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSI 181 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHH
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHH
Confidence 45566667778999999999999999
No 380
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=83.74 E-value=0.27 Score=46.12 Aligned_cols=30 Identities=13% Similarity=0.015 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHhC-CCeEEEcCCCCCcceE
Q psy4476 135 NRSQVYAVKHAIQR-PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 135 N~sQ~~AV~~aL~~-~~tLIqGPPGTGKTtT 164 (266)
+...+++++.+... .+..|-||+|.||||+
T Consensus 55 ~~~i~~~L~~~~~~~~~valvG~nGaGKSTL 85 (413)
T 1tq4_A 55 NSAISDALKEIDSSVLNVAVTGETGSGKSSF 85 (413)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECTTSSHHHH
T ss_pred chhhhhhhhhcccCCeEEEEECCCCCcHHHH
Confidence 34456666666654 4778999999999999
No 381
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=83.62 E-value=0.19 Score=45.33 Aligned_cols=16 Identities=6% Similarity=-0.004 Sum_probs=15.1
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||+|+||||.
T Consensus 127 e~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSML 142 (305)
T ss_dssp SEEEEECSSSSSHHHH
T ss_pred CEEEEECCCCCcHHHH
Confidence 6889999999999999
No 382
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=83.52 E-value=0.63 Score=40.49 Aligned_cols=50 Identities=8% Similarity=-0.043 Sum_probs=29.9
Q ss_pred HHHHHHHHHHh--CCCeEEE---cCCCCCcceEeCccccccccchhhhhccCCceEe--cCCCC
Q psy4476 137 SQVYAVKHAIQ--RPLSLIQ---GMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLN--HRPSG 193 (266)
Q Consensus 137 sQ~~AV~~aL~--~~~tLIq---GPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLv--cAPSN 193 (266)
+|..-+...+. .++..|. +-.|+||||+ ...+. ..+.+ .+.|||+ +=|.+
T Consensus 21 ~~~~~~~r~~~~~~~~i~v~~~s~KGGvGKTT~----a~nLA--~~la~-~G~rVlliD~D~q~ 77 (298)
T 2oze_A 21 KILEELRRILSNKNEAIVILNNYFKGGVGKSKL----STMFA--YLTDK-LNLKVLMIDKDLQA 77 (298)
T ss_dssp HHHHHHHHHHHHHCSCEEEEECCSSSSSSHHHH----HHHHH--HHHHH-TTCCEEEEEECTTC
T ss_pred HHHHHHHHHhcCCCcEEEEEeccCCCCchHHHH----HHHHH--HHHHh-CCCeEEEEeCCCCC
Confidence 34444444443 3454454 5899999999 44444 33444 5788887 45544
No 383
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=83.40 E-value=0.24 Score=41.91 Aligned_cols=15 Identities=13% Similarity=0.058 Sum_probs=13.6
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+..|.||||+||||+
T Consensus 18 ~i~i~G~~gsGKst~ 32 (236)
T 1q3t_A 18 QIAIDGPASSGKSTV 32 (236)
T ss_dssp EEEEECSSCSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 567899999999998
No 384
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=83.26 E-value=0.17 Score=42.40 Aligned_cols=32 Identities=13% Similarity=0.038 Sum_probs=21.8
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCceEec
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNH 189 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvc 189 (266)
+++ .|-+|+||||+ ...+. ..+.+ .++|||+.
T Consensus 3 I~v-s~kGGvGKTt~----a~~LA--~~la~-~g~~Vlli 34 (254)
T 3kjh_A 3 LAV-AGKGGVGKTTV----AAGLI--KIMAS-DYDKIYAV 34 (254)
T ss_dssp EEE-ECSSSHHHHHH----HHHHH--HHHTT-TCSCEEEE
T ss_pred EEE-ecCCCCCHHHH----HHHHH--HHHHH-CCCeEEEE
Confidence 445 89999999999 44444 33444 46787764
No 385
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=83.11 E-value=0.19 Score=45.31 Aligned_cols=22 Identities=23% Similarity=0.151 Sum_probs=18.6
Q ss_pred CCCeEEEcCCCCCcceEeCccccccc
Q psy4476 148 RPLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
.++.+|.||.|.|||+. +.+|.
T Consensus 23 ~~~~~i~G~NGsGKS~l----leAi~ 44 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSL----LDAIL 44 (339)
T ss_dssp SEEEEEECCTTSSHHHH----HHHHH
T ss_pred CCeEEEECCCCCCHHHH----HHHHH
Confidence 36899999999999999 56654
No 386
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=83.04 E-value=0.22 Score=45.96 Aligned_cols=14 Identities=7% Similarity=0.105 Sum_probs=13.2
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|.||||+||||+
T Consensus 27 i~l~G~~G~GKTTl 40 (359)
T 2ga8_A 27 VILVGSPGSGKSTI 40 (359)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 68899999999999
No 387
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=82.84 E-value=0.31 Score=43.14 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=11.2
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+-.|.||+|+||||+
T Consensus 6 ~iIgItG~sGSGKSTv 21 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTV 21 (290)
T ss_dssp CEEEEESCC---CCTH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4567899999999999
No 388
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=82.76 E-value=0.29 Score=46.00 Aligned_cols=30 Identities=10% Similarity=-0.025 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHh---CCCeEEEcCCCCCcceEe
Q psy4476 136 RSQVYAVKHAIQ---RPLSLIQGMNQRSNGLHH 165 (266)
Q Consensus 136 ~sQ~~AV~~aL~---~~~tLIqGPPGTGKTtTi 165 (266)
..=.+||-..+. ..-.+|.||||+|||+.+
T Consensus 159 ~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred cccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 334455554442 246799999999999994
No 389
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=82.71 E-value=0.21 Score=42.57 Aligned_cols=15 Identities=13% Similarity=0.060 Sum_probs=13.9
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.-|.||.|+||||+
T Consensus 27 iigI~G~~GsGKSTl 41 (245)
T 2jeo_A 27 LIGVSGGTASGKSTV 41 (245)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 677999999999999
No 390
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=82.56 E-value=0.27 Score=42.35 Aligned_cols=16 Identities=13% Similarity=0.005 Sum_probs=14.2
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+-+|-|++|+||||.
T Consensus 25 ~~I~ieG~~GsGKST~ 40 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTF 40 (263)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4668899999999999
No 391
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=82.49 E-value=0.28 Score=42.22 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=14.5
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||+|+||||+
T Consensus 28 ~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 28 PVITVDGPSGAGKGTL 43 (252)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4678999999999999
No 392
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=82.47 E-value=0.43 Score=40.44 Aligned_cols=39 Identities=10% Similarity=0.187 Sum_probs=25.0
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCC-c-eEecCCCCc
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNK-S-NLNHRPSGA 194 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~-k-iLvcAPSN~ 194 (266)
.+.+|-||+|+||||. +..+. ..+.. .+. . ++..-|.+.
T Consensus 4 ~~i~~eG~~gsGKsT~----~~~l~--~~l~~-~~~~~v~~~rep~~t 44 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTA----RNVVV--ETLEQ-LGIRDMVFTREPGGT 44 (213)
T ss_dssp CEEEEEECTTSCHHHH----HHHHH--HHHHH-TTCCCEEEEESSCSS
T ss_pred eEEEEECCCCCCHHHH----HHHHH--HHHHH-cCCCcceeeeCCCCC
Confidence 4667899999999999 55444 23332 232 3 455667665
No 393
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=82.32 E-value=0.36 Score=40.16 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=13.7
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.+|.||+|+|||+.
T Consensus 1 ~ilV~Gg~~SGKS~~ 15 (180)
T 1c9k_A 1 MILVTGGARSGKSRH 15 (180)
T ss_dssp CEEEEECTTSSHHHH
T ss_pred CEEEECCCCCcHHHH
Confidence 468999999999998
No 394
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=82.13 E-value=0.35 Score=41.17 Aligned_cols=34 Identities=9% Similarity=0.081 Sum_probs=23.4
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecC
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHR 190 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcA 190 (266)
++++.+-+|+||||+ ...+. ..+.+ .+.|||+.-
T Consensus 5 I~v~s~kgGvGKTt~----a~~LA--~~la~-~g~~VlliD 38 (263)
T 1hyq_A 5 ITVASGKGGTGKTTI----TANLG--VALAQ-LGHDVTIVD 38 (263)
T ss_dssp EEEEESSSCSCHHHH----HHHHH--HHHHH-TTCCEEEEE
T ss_pred EEEECCCCCCCHHHH----HHHHH--HHHHh-CCCcEEEEE
Confidence 567788999999999 44444 33444 467887653
No 395
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=82.01 E-value=0.6 Score=53.31 Aligned_cols=31 Identities=6% Similarity=-0.047 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHhCC-CeEEEcCCCCCcceE
Q psy4476 134 LNRSQVYAVKHAIQRP-LSLIQGMNQRSNGLH 164 (266)
Q Consensus 134 LN~sQ~~AV~~aL~~~-~tLIqGPPGTGKTtT 164 (266)
|.+.=..++..|+... -.++.||||||||++
T Consensus 630 ltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe~ 661 (2695)
T 4akg_A 630 LLLIGFATLTDSLHQKYGGCFFGPAGTGKTET 661 (2695)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcccCCCCCCcHHH
Confidence 4444556667777654 457899999999999
No 396
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.21 E-value=0.26 Score=40.50 Aligned_cols=15 Identities=13% Similarity=0.096 Sum_probs=13.4
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
-.+|.|+||+|||+.
T Consensus 14 ~i~~~G~~g~GKTsl 28 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSL 28 (218)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 357899999999999
No 397
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=81.17 E-value=0.94 Score=46.23 Aligned_cols=53 Identities=9% Similarity=-0.136 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 133 DLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 133 ~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
...+-|..++..++... +.+-+.|+|||.+-. ++.+ ++...+..++|.+||--
T Consensus 83 ~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~--LP~~-----l~aL~g~~vlVltptre 135 (844)
T 1tf5_A 83 FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTST--LPVY-----LNALTGKGVHVVTVNEY 135 (844)
T ss_dssp CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHH--HHHH-----HHHTTSSCEEEEESSHH
T ss_pred CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHH--HHHH-----HHHHcCCCEEEEeCCHH
Confidence 45689999999999877 889999999998831 1222 22334678999999764
No 398
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=81.14 E-value=0.4 Score=52.48 Aligned_cols=17 Identities=12% Similarity=0.044 Sum_probs=15.4
Q ss_pred CCeEEEcCCCCCcceEe
Q psy4476 149 PLSLIQGMNQRSNGLHH 165 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTi 165 (266)
.+.+|.||||+|||+..
T Consensus 733 ~lVlI~G~PG~GKTtLa 749 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLT 749 (1706)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCcHHHH
Confidence 57899999999999993
No 399
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=81.10 E-value=0.34 Score=39.43 Aligned_cols=15 Identities=7% Similarity=0.012 Sum_probs=13.7
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
...|-||||.||||.
T Consensus 28 ~v~lvG~~g~GKSTL 42 (210)
T 1pui_A 28 EVAFAGRSNAGKSSA 42 (210)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 468999999999999
No 400
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=80.97 E-value=0.42 Score=40.01 Aligned_cols=34 Identities=6% Similarity=0.026 Sum_probs=22.3
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCceEec
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNH 189 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvc 189 (266)
+++..+-+|+||||+ ...+. ..+.+..++|||+.
T Consensus 7 I~v~s~kGGvGKTt~----a~~LA--~~la~~~g~~Vlli 40 (245)
T 3ea0_A 7 FGFVSAKGGDGGSCI----AANFA--FALSQEPDIHVLAV 40 (245)
T ss_dssp EEEEESSTTSSHHHH----HHHHH--HHHTTSTTCCEEEE
T ss_pred EEEECCCCCcchHHH----HHHHH--HHHHhCcCCCEEEE
Confidence 456667799999999 44444 34444227787764
No 401
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=80.89 E-value=0.27 Score=43.74 Aligned_cols=15 Identities=13% Similarity=0.080 Sum_probs=14.0
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+..|.||+|+||||+
T Consensus 82 iigI~G~~GsGKSTl 96 (308)
T 1sq5_A 82 IISIAGSVAVGKSTT 96 (308)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 678999999999999
No 402
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=80.74 E-value=0.34 Score=41.61 Aligned_cols=38 Identities=13% Similarity=0.071 Sum_probs=25.4
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEe--cCCCC
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLN--HRPSG 193 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLv--cAPSN 193 (266)
-+++..+-.|+||||+ ...+. ..+.+ .+.|||+ |-|.+
T Consensus 20 vI~v~s~kGGvGKTT~----a~nLA--~~la~-~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 20 RIAVMSGKGGVGKSTV----TALLA--VHYAR-QGKKVGILDADFLG 59 (262)
T ss_dssp EEEEECSSSCTTHHHH----HHHHH--HHHHH-TTCCEEEEECCSSC
T ss_pred EEEEEcCCCCCCHHHH----HHHHH--HHHHH-CCCeEEEEeCCCCC
Confidence 3566678889999999 44444 33444 5678887 44554
No 403
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=80.73 E-value=0.38 Score=42.23 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=21.3
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCceEec
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNH 189 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvc 189 (266)
+++. |-.|+||||+ .+.+. ..+.+ .++|||+.
T Consensus 44 I~v~-~KGGvGKTT~----a~nLA--~~La~-~G~~Vlli 75 (307)
T 3end_A 44 FAVY-GKGGIGKSTT----SSNLS--AAFSI-LGKRVLQI 75 (307)
T ss_dssp EEEE-CSTTSSHHHH----HHHHH--HHHHH-TTCCEEEE
T ss_pred EEEE-CCCCccHHHH----HHHHH--HHHHH-CCCeEEEE
Confidence 4555 9999999999 44444 33444 46787753
No 404
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=80.70 E-value=0.38 Score=41.09 Aligned_cols=35 Identities=9% Similarity=0.134 Sum_probs=23.4
Q ss_pred eEEEcCCCCCcceEeCccccccccchhhhhccCCceEe--cCCCC
Q psy4476 151 SLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLN--HRPSG 193 (266)
Q Consensus 151 tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLv--cAPSN 193 (266)
++ .|-.|+||||+ ...+. ..+.+ .+.|||+ |-|.+
T Consensus 5 ~v-s~KGGvGKTT~----a~nLA--~~la~-~G~~VlliD~D~q~ 41 (269)
T 1cp2_A 5 AI-YGKGGIGKSTT----TQNLT--SGLHA-MGKTIMVVGCDPKA 41 (269)
T ss_dssp EE-EECTTSSHHHH----HHHHH--HHHHT-TTCCEEEEEECTTS
T ss_pred EE-ecCCCCcHHHH----HHHHH--HHHHH-CCCcEEEEcCCCCC
Confidence 44 68999999999 44444 33444 5778887 55544
No 405
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=80.60 E-value=0.29 Score=44.80 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=18.1
Q ss_pred CCCeEEEcCCCCCcceEeCccccccc
Q psy4476 148 RPLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
.++.+|.||.|.||||. +.+|.
T Consensus 23 ~g~~~i~G~NGaGKTTl----l~ai~ 44 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSL----FEAIS 44 (365)
T ss_dssp SEEEEEECCTTSSHHHH----HHHHH
T ss_pred CCeEEEECCCCCCHHHH----HHHHH
Confidence 45889999999999998 55555
No 406
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=80.57 E-value=0.41 Score=41.60 Aligned_cols=43 Identities=9% Similarity=0.003 Sum_probs=29.3
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCccccc
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGANKLS 198 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~arl~ 198 (266)
.+.+|.||.|.||||.+ ...+. . ....+.++++.-|.=-.|..
T Consensus 20 ~l~v~~G~MgsGKTT~l----L~~~~--r-~~~~g~kvli~kp~~D~Ryg 62 (234)
T 2orv_A 20 QIQVILGPMFSGKSTEL----MRRVR--R-FQIAQYKCLVIKYAKDTRYS 62 (234)
T ss_dssp EEEEEECCTTSCHHHHH----HHHHH--H-HHTTTCCEEEEEETTCCCC-
T ss_pred EEEEEECCCCCcHHHHH----HHHHH--H-HHHCCCeEEEEeecCCccch
Confidence 57899999999999983 22231 1 12357899999887555544
No 407
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=80.31 E-value=0.29 Score=37.63 Aligned_cols=14 Identities=14% Similarity=0.088 Sum_probs=12.7
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 4 i~v~G~~~~GKSsl 17 (161)
T 2dyk_A 4 VVIVGRPNVGKSSL 17 (161)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 47889999999999
No 408
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=80.07 E-value=0.44 Score=52.16 Aligned_cols=18 Identities=11% Similarity=0.023 Sum_probs=16.0
Q ss_pred CCCeEEEcCCCCCcceEe
Q psy4476 148 RPLSLIQGMNQRSNGLHH 165 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTi 165 (266)
..+++|.||||+|||+..
T Consensus 383 G~lilI~G~pGsGKTtLa 400 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLT 400 (1706)
T ss_dssp TSEEEEECSTTSSHHHHH
T ss_pred CcEEEEEeCCCCCHHHHH
Confidence 368999999999999993
No 409
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=79.94 E-value=0.42 Score=45.71 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=15.3
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||||+||||.
T Consensus 40 e~~~l~G~nGsGKSTL 55 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLF 55 (525)
T ss_dssp SEEEEEESTTSSHHHH
T ss_pred eEEEEEcCCCCCHHHH
Confidence 6899999999999999
No 410
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=79.80 E-value=0.38 Score=40.15 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=21.7
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCceEec
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNH 189 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvc 189 (266)
+++.-+-+|+||||+ ...+. ..+.+ .+.|||+.
T Consensus 5 i~v~s~kgGvGKTt~----a~~LA--~~la~-~g~~Vlli 37 (237)
T 1g3q_A 5 ISIVSGKGGTGKTTV----TANLS--VALGD-RGRKVLAV 37 (237)
T ss_dssp EEEECSSTTSSHHHH----HHHHH--HHHHH-TTCCEEEE
T ss_pred EEEecCCCCCCHHHH----HHHHH--HHHHh-cCCeEEEE
Confidence 445567789999999 44444 33444 46787764
No 411
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=79.79 E-value=0.27 Score=45.04 Aligned_cols=17 Identities=12% Similarity=0.147 Sum_probs=15.2
Q ss_pred CCeEEEcCCCCCcceEe
Q psy4476 149 PLSLIQGMNQRSNGLHH 165 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTi 165 (266)
++.+|.||+|+|||+..
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47899999999999994
No 412
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=79.54 E-value=0.33 Score=43.55 Aligned_cols=16 Identities=6% Similarity=-0.070 Sum_probs=14.3
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|-||+|+||||+
T Consensus 91 ~ivgI~G~sGsGKSTL 106 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTT 106 (312)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred EEEEEECCCCchHHHH
Confidence 3678999999999999
No 413
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=79.50 E-value=0.93 Score=46.61 Aligned_cols=53 Identities=9% Similarity=-0.119 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 133 DLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 133 ~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
...+-|..++...+... +.+-+-|+|||.+.. ++.+ ++...++.++|.+||--
T Consensus 111 rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~--LP~~-----l~aL~g~~v~VvTpTre 163 (922)
T 1nkt_A 111 RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCV--LPAY-----LNALAGNGVHIVTVNDY 163 (922)
T ss_dssp CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTH--HHHH-----HHHTTTSCEEEEESSHH
T ss_pred CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHH--HHHH-----HHHHhCCCeEEEeCCHH
Confidence 45688999999888766 889999999998821 1221 22334678999999774
No 414
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=79.33 E-value=0.5 Score=45.19 Aligned_cols=17 Identities=6% Similarity=-0.234 Sum_probs=15.2
Q ss_pred CCeEEEcCCCCCcceEe
Q psy4476 149 PLSLIQGMNQRSNGLHH 165 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTi 165 (266)
...+|.||||+|||+.+
T Consensus 152 q~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp CEEEEECCSSSCHHHHH
T ss_pred CEEEEECCCCCCccHHH
Confidence 56899999999999994
No 415
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=79.25 E-value=0.35 Score=39.27 Aligned_cols=14 Identities=7% Similarity=0.000 Sum_probs=12.8
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-||+|.||||.
T Consensus 8 v~lvG~~g~GKSTL 21 (199)
T 2f9l_A 8 VVLIGDSGVGKSNL 21 (199)
T ss_dssp EEEESSTTSSHHHH
T ss_pred EEEECcCCCCHHHH
Confidence 47899999999999
No 416
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=79.22 E-value=0.32 Score=39.24 Aligned_cols=16 Identities=6% Similarity=-0.027 Sum_probs=14.8
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||.|.||||.
T Consensus 34 e~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTL 49 (158)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4788999999999999
No 417
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=79.18 E-value=0.31 Score=40.75 Aligned_cols=15 Identities=20% Similarity=0.142 Sum_probs=13.5
Q ss_pred eEEEcCCCCCcceEe
Q psy4476 151 SLIQGMNQRSNGLHH 165 (266)
Q Consensus 151 tLIqGPPGTGKTtTi 165 (266)
.||.||+|+||||+.
T Consensus 19 vli~G~SGaGKStla 33 (181)
T 3tqf_A 19 VLITGEANIGKSELS 33 (181)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 589999999999993
No 418
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=79.09 E-value=0.42 Score=40.54 Aligned_cols=16 Identities=13% Similarity=0.015 Sum_probs=15.0
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||.|.||||.
T Consensus 36 e~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTL 51 (214)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 6889999999999999
No 419
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=78.93 E-value=0.34 Score=43.01 Aligned_cols=15 Identities=7% Similarity=0.233 Sum_probs=13.7
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+..|.||+|+||||+
T Consensus 33 ii~I~G~sGsGKSTl 47 (290)
T 1odf_A 33 FIFFSGPQGSGKSFT 47 (290)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 567899999999999
No 420
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=78.81 E-value=0.47 Score=41.24 Aligned_cols=31 Identities=10% Similarity=0.026 Sum_probs=21.0
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCceEe
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLN 188 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLv 188 (266)
+++ .|-+|+||||+ ...+. ..+.+ .+.|||+
T Consensus 5 Iav-s~KGGvGKTT~----a~nLA--~~La~-~G~rVll 35 (289)
T 2afh_E 5 CAI-YGKGGIGKSTT----TQNLV--AALAE-MGKKVMI 35 (289)
T ss_dssp EEE-EECTTSSHHHH----HHHHH--HHHHH-TTCCEEE
T ss_pred EEE-eCCCcCcHHHH----HHHHH--HHHHH-CCCeEEE
Confidence 344 68999999999 44444 33444 4678876
No 421
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=78.79 E-value=0.37 Score=40.91 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=14.8
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||.|.||||.
T Consensus 31 e~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTL 46 (224)
T ss_dssp CEEEEEECTTSCHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5788999999999999
No 422
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=78.74 E-value=0.34 Score=44.23 Aligned_cols=27 Identities=11% Similarity=-0.108 Sum_probs=21.0
Q ss_pred HHHHHHHHh---CCCeEEEcCCCCCcceEe
Q psy4476 139 VYAVKHAIQ---RPLSLIQGMNQRSNGLHH 165 (266)
Q Consensus 139 ~~AV~~aL~---~~~tLIqGPPGTGKTtTi 165 (266)
..|+...+. .....|.||+|+||||++
T Consensus 59 ~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl 88 (347)
T 2obl_A 59 VRAIDGLLTCGIGQRIGIFAGSGVGKSTLL 88 (347)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHH
T ss_pred CEEEEeeeeecCCCEEEEECCCCCCHHHHH
Confidence 357766643 368899999999999993
No 423
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=78.73 E-value=0.69 Score=36.47 Aligned_cols=15 Identities=13% Similarity=-0.020 Sum_probs=7.8
Q ss_pred eEEEcCCCCCcceEe
Q psy4476 151 SLIQGMNQRSNGLHH 165 (266)
Q Consensus 151 tLIqGPPGTGKTtTi 165 (266)
.+|-|+||+|||+.+
T Consensus 11 i~v~G~~~~GKssl~ 25 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVL 25 (183)
T ss_dssp EEEECCCCC------
T ss_pred EEEECCCCCCHHHHH
Confidence 478899999999993
No 424
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=78.71 E-value=0.49 Score=40.04 Aligned_cols=15 Identities=13% Similarity=-0.022 Sum_probs=13.5
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+-+|.|++|+||||.
T Consensus 4 ~i~~~G~~g~GKtt~ 18 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTF 18 (241)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 457899999999999
No 425
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=78.60 E-value=0.35 Score=37.37 Aligned_cols=14 Identities=7% Similarity=0.069 Sum_probs=12.6
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 8 i~v~G~~~~GKssl 21 (168)
T 1z2a_A 8 MVVVGNGAVGKSSM 21 (168)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECcCCCCHHHH
Confidence 36789999999999
No 426
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=78.33 E-value=0.56 Score=52.19 Aligned_cols=17 Identities=12% Similarity=0.044 Sum_probs=15.7
Q ss_pred CCeEEEcCCCCCcceEe
Q psy4476 149 PLSLIQGMNQRSNGLHH 165 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTi 165 (266)
.+++|.||||+|||+..
T Consensus 384 ~lilI~G~pGsGKTtLa 400 (2050)
T 3cmu_A 384 RIVEIYGPESSGKTTLT 400 (2050)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred cEEEEEeCCCCCHHHHH
Confidence 68999999999999994
No 427
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=78.30 E-value=0.37 Score=37.01 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=12.6
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 6 i~v~G~~~~GKSsl 19 (167)
T 1kao_A 6 VVVLGSGGVGKSAL 19 (167)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 36899999999999
No 428
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=78.26 E-value=0.39 Score=37.74 Aligned_cols=14 Identities=7% Similarity=-0.040 Sum_probs=12.9
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+||||.
T Consensus 6 v~lvG~~gvGKStL 19 (165)
T 2wji_A 6 IALIGNPNVGKSTI 19 (165)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999999
No 429
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=78.23 E-value=0.45 Score=40.19 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=23.6
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCceEe--cCC
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLN--HRP 191 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLv--cAP 191 (266)
+++..+-.|+||||+ ...+. ..+.+ .+.|||+ |-|
T Consensus 5 i~v~s~kgGvGKTt~----a~~LA--~~la~-~g~~VlliD~D~ 41 (260)
T 3q9l_A 5 IVVTSGKGGVGKTTS----SAAIA--TGLAQ-KGKKTVVIDFAI 41 (260)
T ss_dssp EEEECSSTTSSHHHH----HHHHH--HHHHH-TTCCEEEEECCC
T ss_pred EEEECCCCCCcHHHH----HHHHH--HHHHh-CCCcEEEEECCC
Confidence 455667889999999 44444 34444 5778887 555
No 430
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=78.20 E-value=0.89 Score=46.44 Aligned_cols=53 Identities=11% Similarity=-0.083 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 133 DLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 133 ~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
...+-|..++..++... +.+-+.|||||.+-. ++.+ ++...+..++|.+||--
T Consensus 74 ~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~--LP~l-----~~~l~g~~vlVltPTre 126 (853)
T 2fsf_A 74 RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTAT--LPAY-----LNALTGKGVHVVTVNDY 126 (853)
T ss_dssp CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHH--HHHH-----HHHTTSSCCEEEESSHH
T ss_pred CCChHHHhhcccccCCe--eeeecCCchHHHHHH--HHHH-----HHHHcCCcEEEEcCCHH
Confidence 34589999999888776 889999999998821 1111 12234678999999864
No 431
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=78.18 E-value=0.39 Score=38.93 Aligned_cols=14 Identities=7% Similarity=0.000 Sum_probs=13.0
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-||+|.||||.
T Consensus 32 v~lvG~~g~GKSTL 45 (191)
T 1oix_A 32 VVLIGDSGVGKSNL 45 (191)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECcCCCCHHHH
Confidence 57899999999999
No 432
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=78.11 E-value=0.38 Score=38.51 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=13.0
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|.|++|+|||+.
T Consensus 51 i~vvG~~g~GKSsl 64 (193)
T 2ged_A 51 IIIAGPQNSGKTSL 64 (193)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999999
No 433
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=77.97 E-value=0.36 Score=36.94 Aligned_cols=14 Identities=7% Similarity=0.076 Sum_probs=12.7
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 6 i~v~G~~~~GKssl 19 (166)
T 2ce2_X 6 LVVVGAGGVGKSAL 19 (166)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 47899999999999
No 434
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=77.94 E-value=0.38 Score=44.05 Aligned_cols=16 Identities=19% Similarity=0.052 Sum_probs=14.4
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|.||+|+||||.
T Consensus 8 ~lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 8 FLIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCcCcHHHH
Confidence 3678999999999999
No 435
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=77.87 E-value=0.38 Score=39.07 Aligned_cols=33 Identities=9% Similarity=-0.020 Sum_probs=21.1
Q ss_pred eEEEcCCCCCcceEeCccccccccchhhhhccCCceEecC
Q psy4476 151 SLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHR 190 (266)
Q Consensus 151 tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcA 190 (266)
++..+-.|+||||+ ...+. ..+.+ .+.||++.=
T Consensus 5 ~v~s~kgG~GKTt~----a~~la--~~la~-~g~~vlliD 37 (206)
T 4dzz_A 5 SFLNPKGGSGKTTA----VINIA--TALSR-SGYNIAVVD 37 (206)
T ss_dssp EECCSSTTSSHHHH----HHHHH--HHHHH-TTCCEEEEE
T ss_pred EEEeCCCCccHHHH----HHHHH--HHHHH-CCCeEEEEE
Confidence 34457789999999 44444 33444 567777643
No 436
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=77.62 E-value=0.39 Score=43.77 Aligned_cols=21 Identities=14% Similarity=-0.016 Sum_probs=18.4
Q ss_pred CCeEEEcCCCCCcceEeCccccccc
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
.+.+|.||.|.|||+. +.+|.
T Consensus 26 gl~vi~G~NGaGKT~i----leAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSI----FEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHH----HHHHH
T ss_pred CeEEEECCCCCCHHHH----HHHHH
Confidence 6899999999999999 66665
No 437
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=77.52 E-value=0.4 Score=37.53 Aligned_cols=14 Identities=7% Similarity=0.041 Sum_probs=12.8
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 10 i~v~G~~~~GKSsl 23 (177)
T 1wms_A 10 VILLGDGGVGKSSL 23 (177)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 47899999999999
No 438
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=77.49 E-value=0.53 Score=42.77 Aligned_cols=19 Identities=16% Similarity=0.048 Sum_probs=15.8
Q ss_pred CCCeEEEcCCCCCcceEeC
Q psy4476 148 RPLSLIQGMNQRSNGLHHQ 166 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtTiv 166 (266)
.++.+|.||+|+|||+...
T Consensus 3 ~~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHH
Confidence 3567899999999999953
No 439
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=77.41 E-value=0.43 Score=40.91 Aligned_cols=16 Identities=13% Similarity=0.034 Sum_probs=15.0
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||.|.||||.
T Consensus 32 e~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5789999999999999
No 440
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=77.25 E-value=0.39 Score=37.16 Aligned_cols=14 Identities=14% Similarity=0.069 Sum_probs=12.6
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 6 i~v~G~~~~GKssl 19 (170)
T 1g16_A 6 ILLIGDSGVGKSCL 19 (170)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECcCCCCHHHH
Confidence 36889999999999
No 441
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=76.92 E-value=0.42 Score=36.90 Aligned_cols=14 Identities=7% Similarity=0.010 Sum_probs=12.6
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 6 i~v~G~~~~GKssl 19 (170)
T 1ek0_A 6 LVLLGEAAVGKSSI 19 (170)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 36789999999999
No 442
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=76.90 E-value=0.44 Score=41.07 Aligned_cols=16 Identities=6% Similarity=0.185 Sum_probs=14.5
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||.|.||||.
T Consensus 25 e~~~liG~nGsGKSTL 40 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVF 40 (240)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 4678999999999999
No 443
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=76.87 E-value=0.67 Score=53.65 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=19.7
Q ss_pred HHHHHHHHhC-CCeEEEcCCCCCcceEe
Q psy4476 139 VYAVKHAIQR-PLSLIQGMNQRSNGLHH 165 (266)
Q Consensus 139 ~~AV~~aL~~-~~tLIqGPPGTGKTtTi 165 (266)
..-+...+.. .-.|+.||||||||.++
T Consensus 1294 ~~ll~~ll~~~~pvLL~GptGtGKT~li 1321 (3245)
T 3vkg_A 1294 VDVLHAWLSEHRPLILCGPPGSGKTMTL 1321 (3245)
T ss_dssp HHHHHHHHHTTCCCEEESSTTSSHHHHH
T ss_pred HHHHHHHHHCCCcEEEECCCCCCHHHHH
Confidence 3445555554 56699999999999883
No 444
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=76.86 E-value=0.43 Score=37.37 Aligned_cols=14 Identities=14% Similarity=0.045 Sum_probs=12.7
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 11 i~v~G~~~~GKSsl 24 (182)
T 1ky3_A 11 VIILGDSGVGKTSL 24 (182)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 47889999999999
No 445
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=76.81 E-value=0.5 Score=40.24 Aligned_cols=13 Identities=8% Similarity=-0.143 Sum_probs=12.0
Q ss_pred EEEcCCCCCcceE
Q psy4476 152 LIQGMNQRSNGLH 164 (266)
Q Consensus 152 LIqGPPGTGKTtT 164 (266)
-|+|++|+||||+
T Consensus 13 glTGgigsGKStv 25 (210)
T 4i1u_A 13 GLTGGIGSGKTTV 25 (210)
T ss_dssp EEECCTTSCHHHH
T ss_pred EEECCCCCCHHHH
Confidence 5799999999998
No 446
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=76.59 E-value=0.44 Score=36.84 Aligned_cols=14 Identities=7% Similarity=-0.016 Sum_probs=12.6
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 6 i~v~G~~~~GKssl 19 (172)
T 2erx_A 6 VAVFGAGGVGKSSL 19 (172)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 36789999999999
No 447
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=76.39 E-value=0.62 Score=41.53 Aligned_cols=17 Identities=18% Similarity=0.132 Sum_probs=15.7
Q ss_pred CCCeEEEcCCCCCcceE
Q psy4476 148 RPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 148 ~~~tLIqGPPGTGKTtT 164 (266)
..+++|.||.|.|||+.
T Consensus 24 ~g~~~i~G~NGsGKS~l 40 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNI 40 (322)
T ss_dssp SSEEEEECCTTTCSTHH
T ss_pred CCcEEEECCCCCcHHHH
Confidence 46899999999999999
No 448
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=76.35 E-value=0.58 Score=38.99 Aligned_cols=18 Identities=11% Similarity=-0.047 Sum_probs=15.3
Q ss_pred hCCCeEEEcCCCCCcceE
Q psy4476 147 QRPLSLIQGMNQRSNGLH 164 (266)
Q Consensus 147 ~~~~tLIqGPPGTGKTtT 164 (266)
.+.+-.|.||+|+||||+
T Consensus 5 ~~~iI~i~g~~GsGk~ti 22 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLV 22 (201)
T ss_dssp -CCEEEEEECTTSSHHHH
T ss_pred CCeEEEEeCCCCCCHHHH
Confidence 456778999999999999
No 449
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=76.35 E-value=0.63 Score=39.93 Aligned_cols=16 Identities=6% Similarity=0.048 Sum_probs=14.8
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||.|.||||.
T Consensus 29 e~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTI 44 (243)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4788999999999999
No 450
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=76.24 E-value=0.46 Score=37.03 Aligned_cols=14 Identities=7% Similarity=-0.050 Sum_probs=12.7
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 7 i~i~G~~~vGKSsl 20 (175)
T 2nzj_A 7 VVLLGDPGVGKTSL 20 (175)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCccHHHH
Confidence 47899999999998
No 451
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=76.17 E-value=0.46 Score=36.74 Aligned_cols=14 Identities=7% Similarity=-0.066 Sum_probs=12.6
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 9 i~v~G~~~~GKSsl 22 (170)
T 1z0j_A 9 VCLLGDTGVGKSSI 22 (170)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECcCCCCHHHH
Confidence 36789999999999
No 452
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=76.17 E-value=0.57 Score=43.02 Aligned_cols=51 Identities=8% Similarity=-0.014 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHh--------C---CCeEEEcCCCCCcceEeCccccccccchhhhh-----ccCCceEec
Q psy4476 133 DLNRSQVYAVKHAIQ--------R---PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNR-----LRNKSNLNH 189 (266)
Q Consensus 133 ~LN~sQ~~AV~~aL~--------~---~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~-----~~~~kiLvc 189 (266)
.++..|..++..... + -++++.|=.|+||||+ .+.+. ..+.. ..+.|||++
T Consensus 86 ~~~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~----a~nLA--~~LA~~g~~~~~g~rVlli 152 (403)
T 3ez9_A 86 ALTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVS----TVTLA--HALRVHQDLLRHDLRILVI 152 (403)
T ss_dssp CBCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------C----HHHHH--HHHHSCGGGGGGCCCEEEE
T ss_pred ccCHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHH----HHHHH--HHHHhcchhhcCCCeEEEE
Confidence 356778888876521 1 2566779999999999 44444 23331 246787753
No 453
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=76.03 E-value=0.49 Score=36.97 Aligned_cols=14 Identities=21% Similarity=0.076 Sum_probs=12.8
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 12 i~v~G~~~~GKssl 25 (181)
T 3tw8_B 12 LLIIGDSGVGKSSL 25 (181)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 47899999999999
No 454
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=75.98 E-value=0.32 Score=45.01 Aligned_cols=33 Identities=9% Similarity=-0.043 Sum_probs=22.6
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCceEec
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNH 189 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvc 189 (266)
+.++.|..|+||||+ .+.+. ..+.+ .++|||+.
T Consensus 4 i~~~~gkGG~GKTt~----a~~la--~~la~-~g~~vllv 36 (374)
T 3igf_A 4 ILTFLGKSGVARTKI----AIAAA--KLLAS-QGKRVLLA 36 (374)
T ss_dssp EEEEECSBHHHHHHH----HHHHH--HHHHH-TTCCEEEE
T ss_pred EEEEeCCCCCcHHHH----HHHHH--HHHHH-CCCCeEEE
Confidence 567889999999999 44444 23444 46776654
No 455
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=75.95 E-value=0.49 Score=37.87 Aligned_cols=14 Identities=14% Similarity=0.093 Sum_probs=12.8
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 5 v~ivG~~gvGKStL 18 (184)
T 2zej_A 5 LMIVGNTGSGKTTL 18 (184)
T ss_dssp EEEESCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 47899999999999
No 456
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=75.94 E-value=0.5 Score=40.96 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=14.9
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||.|.||||.
T Consensus 34 e~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTL 49 (257)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5788999999999999
No 457
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=75.83 E-value=0.47 Score=41.72 Aligned_cols=37 Identities=5% Similarity=-0.261 Sum_probs=24.4
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCC
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPS 192 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPS 192 (266)
.++||.|+||||||+. ...++. .-.+ ++.+++..+=.
T Consensus 22 s~~li~g~p~~~~~~l----~~qfl~--~g~~-~Ge~~~~~~~~ 58 (260)
T 3bs4_A 22 LILIHEEDASSRGKDI----LFYILS--RKLK-SDNLVGMFSIS 58 (260)
T ss_dssp EEEEEECSGGGCHHHH----HHHHHH--HHHH-TTCEEEEEECS
T ss_pred cEEEEEeCCCccHHHH----HHHHHH--HHHH-CCCcEEEEEEe
Confidence 5789999999999944 444442 2222 46787776654
No 458
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=75.81 E-value=0.68 Score=38.49 Aligned_cols=37 Identities=8% Similarity=0.047 Sum_probs=24.3
Q ss_pred CeEEEcCCCCCcceEeCccccccccchhhhhccCCceEe--cCCCCc
Q psy4476 150 LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLN--HRPSGA 194 (266)
Q Consensus 150 ~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLv--cAPSN~ 194 (266)
+++..+-.|+||||+ ...+. ..+.+ .+ |||+ +-|.+.
T Consensus 3 I~v~s~KGGvGKTT~----a~~LA--~~la~-~g-~VlliD~D~q~~ 41 (209)
T 3cwq_A 3 ITVASFKGGVGKTTT----AVHLS--AYLAL-QG-ETLLIDGDPNRS 41 (209)
T ss_dssp EEEEESSTTSSHHHH----HHHHH--HHHHT-TS-CEEEEEECTTCH
T ss_pred EEEEcCCCCCcHHHH----HHHHH--HHHHh-cC-CEEEEECCCCCC
Confidence 456678899999999 44444 33444 46 8887 555543
No 459
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=75.80 E-value=0.46 Score=36.45 Aligned_cols=14 Identities=7% Similarity=0.095 Sum_probs=12.6
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 7 i~v~G~~~~GKssl 20 (168)
T 1u8z_A 7 VIMVGSGGVGKSAL 20 (168)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 36789999999999
No 460
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=75.65 E-value=0.62 Score=42.25 Aligned_cols=17 Identities=6% Similarity=0.016 Sum_probs=14.7
Q ss_pred CCeEEEcCCCCCcceEe
Q psy4476 149 PLSLIQGMNQRSNGLHH 165 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTi 165 (266)
++.+|.||+|+|||+..
T Consensus 11 ~~i~i~GptgsGKt~la 27 (316)
T 3foz_A 11 KAIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCccCHHHHH
Confidence 36789999999999994
No 461
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=75.57 E-value=1 Score=46.48 Aligned_cols=53 Identities=11% Similarity=-0.118 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHhCCCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 133 DLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 133 ~LN~sQ~~AV~~aL~~~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
...+-|..++...++.. +.+-..|+|||.+.. ++.+ ++...+..++|.+||--
T Consensus 79 ~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~--Lp~~-----L~aL~G~qv~VvTPTre 131 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVAT--LAVA-----LNALTGKGVHVVTVNDY 131 (997)
T ss_dssp CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHH--HHHH-----HHHTTCSCCEEEESSHH
T ss_pred CCcHHHHhhcccccCCc--eeeccCCCchHHHHH--HHHH-----HHHHhCCCEEEEeCCHH
Confidence 45689999999988877 889999999998831 1211 23334678999999875
No 462
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=75.57 E-value=0.52 Score=40.43 Aligned_cols=16 Identities=13% Similarity=0.165 Sum_probs=14.9
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||.|.||||.
T Consensus 33 e~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTT 48 (240)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5788999999999999
No 463
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=75.54 E-value=0.43 Score=38.16 Aligned_cols=14 Identities=7% Similarity=0.086 Sum_probs=13.0
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 26 i~v~G~~~~GKSsl 39 (195)
T 1svi_A 26 IALAGRSNVGKSSF 39 (195)
T ss_dssp EEEEEBTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999999
No 464
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=75.49 E-value=0.53 Score=40.99 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=14.8
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||.|.||||.
T Consensus 33 e~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTF 48 (262)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5788999999999999
No 465
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=75.45 E-value=0.5 Score=43.27 Aligned_cols=49 Identities=4% Similarity=-0.004 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHh--------C---CCeEEEcCCCCCcceEeCccccccccchhhhh-----ccCCceEe
Q psy4476 134 LNRSQVYAVKHAIQ--------R---PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNR-----LRNKSNLN 188 (266)
Q Consensus 134 LN~sQ~~AV~~aL~--------~---~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~-----~~~~kiLv 188 (266)
+...|...+...+. . -++++.|-.|+||||+ .+.+. ..+.+ ..+.|||+
T Consensus 84 ~~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~----a~nLA--~~La~~~~~~~~g~rVll 148 (398)
T 3ez2_A 84 MSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVS----TVSLA--HAMRAHPHLLMEDLRILV 148 (398)
T ss_dssp BCHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHH----HHHHH--HHHHHCTTTGGGCCCEEE
T ss_pred CCHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHH----HHHHH--HHHHhcchhhcCCCeEEE
Confidence 45677777776652 1 2466678999999999 44444 23332 24678775
No 466
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=75.38 E-value=0.54 Score=40.03 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=14.9
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||.|.||||.
T Consensus 35 e~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSL 50 (229)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5788999999999999
No 467
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=75.36 E-value=0.51 Score=36.57 Aligned_cols=14 Identities=7% Similarity=-0.028 Sum_probs=12.6
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 9 i~v~G~~~~GKssl 22 (170)
T 1z08_A 9 VVLLGEGCVGKTSL 22 (170)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECcCCCCHHHH
Confidence 36889999999999
No 468
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=75.22 E-value=0.49 Score=36.57 Aligned_cols=14 Identities=14% Similarity=0.114 Sum_probs=12.6
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 5 i~~vG~~~~GKSsl 18 (166)
T 3q72_A 5 VLLLGAPGVGKSAL 18 (166)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 36889999999998
No 469
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=75.21 E-value=0.48 Score=36.98 Aligned_cols=14 Identities=7% Similarity=-0.028 Sum_probs=12.6
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 17 i~v~G~~~~GKssl 30 (179)
T 2y8e_A 17 LVFLGEQSVGKTSL 30 (179)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 46789999999999
No 470
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=75.21 E-value=0.55 Score=40.72 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=14.9
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||.|.||||.
T Consensus 27 e~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTL 42 (249)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCcHHHH
Confidence 5788999999999999
No 471
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=75.19 E-value=0.49 Score=36.46 Aligned_cols=14 Identities=7% Similarity=0.045 Sum_probs=12.6
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 9 i~v~G~~~~GKssl 22 (170)
T 1r2q_A 9 LVLLGESAVGKSSL 22 (170)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 36889999999999
No 472
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=75.12 E-value=0.45 Score=44.69 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=14.7
Q ss_pred CCeEEEcCCCCCcceEe
Q psy4476 149 PLSLIQGMNQRSNGLHH 165 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTi 165 (266)
++.+|.||+|+|||+..
T Consensus 3 ~~i~i~GptgsGKttla 19 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEEECSSSSHHHHH
T ss_pred cEEEEECcchhhHHHHH
Confidence 46789999999999983
No 473
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=75.09 E-value=0.61 Score=44.83 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=13.5
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
+.++.|+||+||||+
T Consensus 37 lIvlvGlpGSGKSTi 51 (520)
T 2axn_A 37 VIVMVGLPARGKTYI 51 (520)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 567899999999998
No 474
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=74.90 E-value=0.45 Score=37.52 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=12.7
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 21 i~v~G~~~~GKssl 34 (183)
T 1moz_A 21 ILILGLDGAGKTTI 34 (183)
T ss_dssp EEEEEETTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 47789999999999
No 475
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=74.80 E-value=0.53 Score=36.81 Aligned_cols=14 Identities=14% Similarity=0.055 Sum_probs=12.9
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 11 i~v~G~~~~GKssl 24 (178)
T 2lkc_A 11 VTIMGHVDHGKTTL 24 (178)
T ss_dssp EEEESCTTTTHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999999
No 476
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=74.74 E-value=0.54 Score=40.57 Aligned_cols=16 Identities=13% Similarity=0.137 Sum_probs=14.9
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||.|.||||.
T Consensus 30 e~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTL 45 (250)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5788999999999999
No 477
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=74.70 E-value=0.58 Score=40.76 Aligned_cols=16 Identities=13% Similarity=0.021 Sum_probs=15.0
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||.|.||||.
T Consensus 42 ei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTT 57 (256)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 5789999999999999
No 478
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=74.66 E-value=0.52 Score=36.30 Aligned_cols=14 Identities=7% Similarity=0.057 Sum_probs=12.5
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 6 i~v~G~~~~GKssl 19 (167)
T 1c1y_A 6 LVVLGSGGVGKSAL 19 (167)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 36789999999999
No 479
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=74.60 E-value=0.51 Score=40.77 Aligned_cols=14 Identities=7% Similarity=-0.047 Sum_probs=12.7
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
..|-|+||+||||.
T Consensus 6 i~lvG~~g~GKTTL 19 (271)
T 3k53_A 6 VALVGNPNVGKTTI 19 (271)
T ss_dssp EEEEECSSSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 46889999999999
No 480
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=74.51 E-value=0.54 Score=37.29 Aligned_cols=14 Identities=7% Similarity=0.133 Sum_probs=12.7
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 10 i~v~G~~~~GKSsl 23 (208)
T 3clv_A 10 TVLLGESSVGKSSI 23 (208)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 47889999999999
No 481
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=74.51 E-value=0.59 Score=40.91 Aligned_cols=16 Identities=6% Similarity=0.156 Sum_probs=14.9
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||.|.||||.
T Consensus 51 ei~~liG~NGsGKSTL 66 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTF 66 (263)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEEcCCCCcHHHH
Confidence 5788999999999999
No 482
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=74.50 E-value=0.54 Score=40.07 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=15.5
Q ss_pred eEEEcCCCCCcceEeCccccccc
Q psy4476 151 SLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 151 tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
.+|-|+||+||||+ +..|+
T Consensus 25 I~lvG~~g~GKStl----~n~l~ 43 (260)
T 2xtp_A 25 IILVGKTGTGKSAA----GNSIL 43 (260)
T ss_dssp EEEEECTTSCHHHH----HHHHH
T ss_pred EEEECCCCCCHHHH----HHHHh
Confidence 57899999999999 55554
No 483
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=74.38 E-value=0.58 Score=40.38 Aligned_cols=16 Identities=13% Similarity=0.015 Sum_probs=15.0
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||.|.||||.
T Consensus 36 e~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTL 51 (247)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5788999999999999
No 484
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=74.20 E-value=0.59 Score=39.98 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=14.9
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|-||.|.||||.
T Consensus 32 e~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTM 47 (235)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCcHHHH
Confidence 5788999999999999
No 485
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=74.17 E-value=0.75 Score=39.09 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=14.2
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+.+|-||||+||||.
T Consensus 6 ~~i~~eG~~g~GKst~ 21 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQ 21 (216)
T ss_dssp CEEEEEECSSSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4667899999999999
No 486
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=74.16 E-value=0.81 Score=35.41 Aligned_cols=14 Identities=7% Similarity=0.098 Sum_probs=12.6
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 5 i~ivG~~~~GKSsl 18 (169)
T 3q85_A 5 VMLVGESGVGKSTL 18 (169)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 36899999999998
No 487
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=74.02 E-value=0.55 Score=37.07 Aligned_cols=14 Identities=14% Similarity=-0.085 Sum_probs=12.7
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 14 i~v~G~~~~GKSsl 27 (195)
T 3bc1_A 14 FLALGDSGVGKTSV 27 (195)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 37889999999999
No 488
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=73.87 E-value=0.57 Score=39.40 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=15.3
Q ss_pred eEEEcCCCCCcceEeCccccccc
Q psy4476 151 SLIQGMNQRSNGLHHQPGGAGIG 173 (266)
Q Consensus 151 tLIqGPPGTGKTtTiv~~i~~Ii 173 (266)
.+|-|+||+||||+ +..|+
T Consensus 32 i~lvG~~g~GKStl----in~l~ 50 (239)
T 3lxx_A 32 IVLVGKTGAGKSAT----GNSIL 50 (239)
T ss_dssp EEEECCTTSSHHHH----HHHHH
T ss_pred EEEECCCCCCHHHH----HHHHc
Confidence 47899999999999 55444
No 489
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=73.84 E-value=0.56 Score=37.20 Aligned_cols=14 Identities=7% Similarity=-0.040 Sum_probs=12.9
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||.|||+.
T Consensus 10 i~lvG~~gvGKStL 23 (188)
T 2wjg_A 10 IALIGNPNVGKSTI 23 (188)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999999
No 490
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=73.74 E-value=0.62 Score=41.07 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=15.0
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|-||.|.||||.
T Consensus 35 e~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTL 50 (275)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5889999999999999
No 491
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=73.72 E-value=0.63 Score=41.03 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=15.0
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||.|.||||.
T Consensus 48 e~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTL 63 (279)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCcHHHH
Confidence 5788999999999999
No 492
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=73.72 E-value=0.62 Score=40.41 Aligned_cols=16 Identities=13% Similarity=0.104 Sum_probs=14.8
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||.|.||||.
T Consensus 32 e~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTL 47 (253)
T ss_dssp CEEEEECCSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5788999999999999
No 493
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=73.67 E-value=0.58 Score=36.90 Aligned_cols=14 Identities=7% Similarity=0.119 Sum_probs=12.6
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 7 i~v~G~~~~GKSsl 20 (189)
T 4dsu_A 7 LVVVGADGVGKSAL 20 (189)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 36899999999999
No 494
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=73.50 E-value=0.63 Score=40.48 Aligned_cols=16 Identities=6% Similarity=0.038 Sum_probs=15.1
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||.|.||||.
T Consensus 47 e~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTI 62 (260)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5889999999999999
No 495
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=73.49 E-value=0.52 Score=37.41 Aligned_cols=15 Identities=7% Similarity=-0.073 Sum_probs=13.3
Q ss_pred CeEEEcCCCCCcceE
Q psy4476 150 LSLIQGMNQRSNGLH 164 (266)
Q Consensus 150 ~tLIqGPPGTGKTtT 164 (266)
-.+|-|+||+|||+.
T Consensus 25 ~i~v~G~~~~GKSsl 39 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSL 39 (195)
T ss_dssp EEEEEEBTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 357899999999999
No 496
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=73.48 E-value=0.63 Score=40.70 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=14.5
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||.|.||||.
T Consensus 31 e~~~i~G~NGsGKSTL 46 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTL 46 (263)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 4678999999999999
No 497
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=73.41 E-value=0.62 Score=40.67 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=15.0
Q ss_pred CCeEEEcCCCCCcceE
Q psy4476 149 PLSLIQGMNQRSNGLH 164 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtT 164 (266)
.+..|.||.|.||||.
T Consensus 47 e~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTL 62 (267)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5889999999999999
No 498
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=73.40 E-value=2.2 Score=42.16 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHH---hCC--CeEEEcCCCCCcceEeCccccccccchhhhhccCCceEecCCCCc
Q psy4476 132 PDLNRSQVYAVKHAI---QRP--LSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGA 194 (266)
Q Consensus 132 ~~LN~sQ~~AV~~aL---~~~--~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLvcAPSN~ 194 (266)
...|.-|..|++..+ ... ..++.|-+|+|||.+ ++.++. + .++++||.+|+..
T Consensus 11 ~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~----~a~~~~-----~-~~~~~lvv~~~~~ 68 (661)
T 2d7d_A 11 YQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFT----VSNLIK-----E-VNKPTLVIAHNKT 68 (661)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHH----HHHHHH-----H-HCCCEEEECSSHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHH----HHHHHH-----H-hCCCEEEEECCHH
Confidence 456788998888654 333 357899999999999 554441 1 2457999999876
No 499
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=73.32 E-value=0.87 Score=38.95 Aligned_cols=40 Identities=10% Similarity=0.231 Sum_probs=23.9
Q ss_pred CCeEEEcCCCCCcceEeCccccccccchhhhhccCCceEe--cCCCCc
Q psy4476 149 PLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLN--HRPSGA 194 (266)
Q Consensus 149 ~~tLIqGPPGTGKTtTiv~~i~~Ii~~~~~~~~~~~kiLv--cAPSN~ 194 (266)
.+.+|-|++|+||||. +..+.. .+....+.++.+ .-|.+.
T Consensus 22 ~~i~~~G~~g~GKst~----~~~l~~--~l~~~~g~~v~~~treP~~t 63 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQ----SHLLAE--YLSEIYGVNNVVLTREPGGT 63 (223)
T ss_dssp EEEEEECSTTSSHHHH----HHHHHH--HHHHHHCGGGEEEEESSCSS
T ss_pred eEEEEECCCCCCHHHH----HHHHHH--HHhhccCceeeEeeeCCCCC
Confidence 3567789999999999 444442 222202334443 467654
No 500
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=73.23 E-value=0.74 Score=36.95 Aligned_cols=14 Identities=7% Similarity=0.008 Sum_probs=2.8
Q ss_pred eEEEcCCCCCcceE
Q psy4476 151 SLIQGMNQRSNGLH 164 (266)
Q Consensus 151 tLIqGPPGTGKTtT 164 (266)
.+|-|+||+|||+.
T Consensus 23 i~v~G~~~~GKssl 36 (208)
T 2yc2_C 23 VAVVGEATVGKSAL 36 (208)
T ss_dssp EEEC----------
T ss_pred EEEECCCCCCHHHH
Confidence 47789999999999
Done!