Your job contains 1 sequence.
>psy4476
MELPVGHTCVELHALDAGDELKLAATSYDASTPGSGPRSRGLRFRIILPVTEVGLELKSS
AGAPTESYHGLFCGPSFWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRC
HLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNR
LRNKSNLNHRPSGANKLSQGHLSQGNNSQEITQPYSQVMSQGGGFSLSQADLSQDSLMMS
QLDGMLSQESAYLDHRPPYSNTHYSQ
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4476
(266 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-040426-2836 - symbol:upf1 "upf1 regulator o... 346 1.2e-33 2
UNIPROTKB|E1C0J4 - symbol:UPF1 "Uncharacterized protein" ... 343 3.3e-33 2
UNIPROTKB|E1BEK9 - symbol:UPF1 "Uncharacterized protein" ... 343 3.4e-33 2
UNIPROTKB|E1C0J3 - symbol:UPF1 "Uncharacterized protein" ... 343 3.4e-33 2
UNIPROTKB|Q92900 - symbol:UPF1 "Regulator of nonsense tra... 343 3.4e-33 2
UNIPROTKB|E2RL81 - symbol:UPF1 "Uncharacterized protein" ... 343 3.4e-33 2
MGI|MGI:107995 - symbol:Upf1 "UPF1 regulator of nonsense ... 342 5.5e-33 2
FB|FBgn0030354 - symbol:Upf1 "Upf1" species:7227 "Drosoph... 316 5.4e-27 1
UNIPROTKB|G4ND47 - symbol:MGG_00976 "Regulator-nonsense t... 289 2.0e-26 2
TAIR|locus:2171007 - symbol:LBA1 "LOW-LEVEL BETA-AMYLASE ... 304 1.1e-25 1
ASPGD|ASPL0000056713 - symbol:AN0646 species:162425 "Emer... 300 2.4e-25 1
POMBASE|SPAC16C9.06c - symbol:upf1 "ATP-dependent RNA hel... 274 1.1e-22 1
SGD|S000004685 - symbol:NAM7 "ATP-dependent RNA helicase ... 263 1.8e-21 1
CGD|CAL0003666 - symbol:NAM7 species:5476 "Candida albica... 246 1.3e-19 1
UNIPROTKB|Q5A507 - symbol:NAM7 "Putative uncharacterized ... 246 1.3e-19 1
WB|WBGene00004880 - symbol:smg-2 species:6239 "Caenorhabd... 216 2.2e-16 1
DICTYBASE|DDB_G0288923 - symbol:upf1 "regulator of nonsen... 189 5.8e-16 2
>ZFIN|ZDB-GENE-040426-2836 [details] [associations]
symbol:upf1 "upf1 regulator of nonsense
transcripts homolog (yeast)" species:7955 "Danio rerio" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA;IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009790 "embryo
development" evidence=IMP] InterPro:IPR018999 Pfam:PF09416
ZFIN:ZDB-GENE-040426-2836 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0003677 GO:GO:0008270 GO:GO:0009790 GO:GO:0004386
HOGENOM:HOG000205990 KO:K14326 CTD:5976 HOVERGEN:HBG061556
EMBL:BC045353 EMBL:FM986817 IPI:IPI00491565 RefSeq:NP_998639.1
UniGene:Dr.96025 SMR:Q7ZVZ4 STRING:Q7ZVZ4 GeneID:406783
KEGG:dre:406783 NextBio:20818296 Uniprot:Q7ZVZ4
Length = 1100
Score = 346 (126.9 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 68/104 (65%), Positives = 80/104 (76%)
Query: 52 EVGLELKSSAGAPTESYHGLFCGPSFWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGH 111
E+ +EL+SSAGAP E H F WKSTSFDRMQ AL+ FAVD+ SVS YIYH+LLGH
Sbjct: 370 EIAIELRSSAGAPVEVPHN-FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGH 428
Query: 112 NVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQG 155
V++V+ +C LPK F+A LPDLN SQVYAVK +QRPLSLIQG
Sbjct: 429 EVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQG 472
Score = 60 (26.2 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 32/99 (32%), Positives = 42/99 (42%)
Query: 169 GAGIGNSANTN-RLRNKSNLNH---RPSGAN-KLSQGHLSQGNNSQEITQPY---SQV-- 218
GA G + R RN+ NH +P+ N + SQ +SQ + +TQ Y SQ
Sbjct: 989 GAPKGKTGGRGGRQRNRGTGNHGSGQPNMPNSQASQDLVSQPFSQGPLTQGYITMSQPSQ 1048
Query: 219 MSQGG-GFXXXXXXXXXXXXMMSQLDGMLSQESAYLDHR 256
MSQ G SQ+D LSQ+S Y R
Sbjct: 1049 MSQPGLSQPELSQDSYLGDEFKSQMDVALSQDSTYQGER 1087
>UNIPROTKB|E1C0J4 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR018999 Pfam:PF09416 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0003677 GO:GO:0008270 GO:GO:0004386
GeneTree:ENSGT00550000074391 EMBL:AADN02071779 IPI:IPI00598917
Ensembl:ENSGALT00000005099 NextBio:20823079 ArrayExpress:E1C0J4
Uniprot:E1C0J4
Length = 1117
Score = 343 (125.8 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
Identities = 67/104 (64%), Positives = 79/104 (75%)
Query: 52 EVGLELKSSAGAPTESYHGLFCGPSFWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGH 111
E+ +EL+SS GAP E H F WKSTSFDRMQ AL+ FAVD+ SVS YIYH+LLGH
Sbjct: 389 EIAIELRSSVGAPVEVTHN-FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGH 447
Query: 112 NVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQG 155
V++V+ +C LPK F+A LPDLN SQVYAVK +QRPLSLIQG
Sbjct: 448 EVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQG 491
Score = 59 (25.8 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
Identities = 26/78 (33%), Positives = 36/78 (46%)
Query: 183 NKSNL-NHRPSG---ANKLSQGHLSQGNNSQEITQPYSQVMSQGGGFXXXXXXXXXXXXM 238
++SNL N + S + SQG L+QG S ++QP SQ+ G
Sbjct: 1030 SQSNLPNSQASQDVVSQPFSQGPLTQGYIS--MSQP-SQMSQPGLSQPELSQDSYLGDEF 1086
Query: 239 MSQLDGMLSQESAYLDHR 256
SQ+D LSQ+S Y R
Sbjct: 1087 KSQIDVALSQDSTYQGER 1104
>UNIPROTKB|E1BEK9 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0044530 "supraspliceosomal complex" evidence=IEA] [GO:0035145
"exon-exon junction complex" evidence=IEA] [GO:0009048 "dosage
compensation by inactivation of X chromosome" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000785
"chromatin" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] InterPro:IPR018999
Pfam:PF09416 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006281
GO:GO:0000785 GO:GO:0003682 GO:GO:0007049 GO:GO:0071044
GO:GO:0009048 GO:GO:0004004 GO:GO:0035145
GeneTree:ENSGT00550000074391 OMA:MFYEGSL EMBL:DAAA02019036
IPI:IPI00685259 Ensembl:ENSBTAT00000027868 Uniprot:E1BEK9
Length = 1127
Score = 343 (125.8 bits), Expect = 3.4e-33, Sum P(2) = 3.4e-33
Identities = 67/104 (64%), Positives = 79/104 (75%)
Query: 52 EVGLELKSSAGAPTESYHGLFCGPSFWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGH 111
E+ +EL+SS GAP E H F WKSTSFDRMQ AL+ FAVD+ SVS YIYH+LLGH
Sbjct: 399 EIAIELRSSVGAPVEVTHN-FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGH 457
Query: 112 NVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQG 155
V++V+ +C LPK F+A LPDLN SQVYAVK +QRPLSLIQG
Sbjct: 458 EVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQG 501
Score = 59 (25.8 bits), Expect = 3.4e-33, Sum P(2) = 3.4e-33
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 171 GIGNSANTNRLRNKSNLNHRPSGANKLSQGHLSQGNNSQEITQPYSQVMSQGGGFXXXXX 230
G+ + TN ++++ + + SQG L+QG S ++QP SQ+ G
Sbjct: 1035 GLPGPSQTNLPNSQAS---QDVASQPFSQGALTQGYIS--MSQP-SQMSQPGLSQPELSQ 1088
Query: 231 XXXXXXXMMSQLDGMLSQESAYLDHR 256
SQ+D LSQ+S Y R
Sbjct: 1089 DSYLGDEFKSQIDVALSQDSTYQGER 1114
>UNIPROTKB|E1C0J3 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000785 "chromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0009048 "dosage compensation by
inactivation of X chromosome" evidence=IEA] [GO:0035145 "exon-exon
junction complex" evidence=IEA] [GO:0044530 "supraspliceosomal
complex" evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] InterPro:IPR018999 Pfam:PF09416 GO:GO:0005524
GO:GO:0005737 GO:GO:0000184 GO:GO:0003677 GO:GO:0006260
GO:GO:0008270 GO:GO:0006281 GO:GO:0000785 GO:GO:0003682
GO:GO:0007049 GO:GO:0071044 GO:GO:0009048 GO:GO:0004004
GO:GO:0035145 GeneTree:ENSGT00550000074391 OMA:MFYEGSL
EMBL:AADN02071779 IPI:IPI00571950 Ensembl:ENSGALT00000005101
ArrayExpress:E1C0J3 Uniprot:E1C0J3
Length = 1128
Score = 343 (125.8 bits), Expect = 3.4e-33, Sum P(2) = 3.4e-33
Identities = 67/104 (64%), Positives = 79/104 (75%)
Query: 52 EVGLELKSSAGAPTESYHGLFCGPSFWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGH 111
E+ +EL+SS GAP E H F WKSTSFDRMQ AL+ FAVD+ SVS YIYH+LLGH
Sbjct: 400 EIAIELRSSVGAPVEVTHN-FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGH 458
Query: 112 NVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQG 155
V++V+ +C LPK F+A LPDLN SQVYAVK +QRPLSLIQG
Sbjct: 459 EVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQG 502
Score = 59 (25.8 bits), Expect = 3.4e-33, Sum P(2) = 3.4e-33
Identities = 26/78 (33%), Positives = 36/78 (46%)
Query: 183 NKSNL-NHRPSG---ANKLSQGHLSQGNNSQEITQPYSQVMSQGGGFXXXXXXXXXXXXM 238
++SNL N + S + SQG L+QG S ++QP SQ+ G
Sbjct: 1041 SQSNLPNSQASQDVVSQPFSQGPLTQGYIS--MSQP-SQMSQPGLSQPELSQDSYLGDEF 1097
Query: 239 MSQLDGMLSQESAYLDHR 256
SQ+D LSQ+S Y R
Sbjct: 1098 KSQIDVALSQDSTYQGER 1115
>UNIPROTKB|Q92900 [details] [associations]
symbol:UPF1 "Regulator of nonsense transcripts 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0009048 "dosage compensation by
inactivation of X chromosome" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000184 "nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay"
evidence=IDA;NAS;IMP;TAS] [GO:0006449 "regulation of translational
termination" evidence=IMP;NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005737
"cytoplasm" evidence=NAS] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000785 "chromatin"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0006260 "DNA replication" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0007049 "cell cycle" evidence=IMP] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR018999 Pfam:PF09416 GO:GO:0005829
GO:GO:0005524 GO:GO:0010467 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0008270 GO:GO:0006281
GO:GO:0000785 GO:GO:0003682 GO:GO:0003723 GO:GO:0007049
GO:GO:0006406 GO:GO:0000932 eggNOG:COG1112 GO:GO:0071044
GO:GO:0009048 GO:GO:0004004 GO:GO:0035145 EMBL:AC003972
GO:GO:0044530 GO:GO:0006449 HOGENOM:HOG000205990 KO:K14326
OMA:MFYEGSL CTD:5976 EMBL:U65533 EMBL:U59323 EMBL:D86988
EMBL:AF074016 EMBL:BC039817 IPI:IPI00034049 IPI:IPI00399170
RefSeq:NP_002902.2 UniGene:Hs.515266 PDB:2GJK PDB:2GK6 PDB:2GK7
PDB:2IYK PDB:2WJV PDB:2WJY PDB:2XZO PDB:2XZP PDBsum:2GJK
PDBsum:2GK6 PDBsum:2GK7 PDBsum:2IYK PDBsum:2WJV PDBsum:2WJY
PDBsum:2XZO PDBsum:2XZP ProteinModelPortal:Q92900 SMR:Q92900
DIP:DIP-29875N IntAct:Q92900 MINT:MINT-5005507 STRING:Q92900
PhosphoSite:Q92900 DMDM:17380291 PaxDb:Q92900 PRIDE:Q92900
Ensembl:ENST00000262803 GeneID:5976 KEGG:hsa:5976 UCSC:uc002nkf.3
UCSC:uc002nkg.3 GeneCards:GC19P018942 HGNC:HGNC:9962 HPA:HPA019587
HPA:HPA020857 MIM:601430 neXtProt:NX_Q92900 PharmGKB:PA34328
HOVERGEN:HBG061556 InParanoid:Q92900 ChiTaRS:UPF1
EvolutionaryTrace:Q92900 GenomeRNAi:5976 NextBio:23259
ArrayExpress:Q92900 Bgee:Q92900 CleanEx:HS_UPF1
Genevestigator:Q92900 GermOnline:ENSG00000005007 Uniprot:Q92900
Length = 1129
Score = 343 (125.8 bits), Expect = 3.4e-33, Sum P(2) = 3.4e-33
Identities = 67/104 (64%), Positives = 79/104 (75%)
Query: 52 EVGLELKSSAGAPTESYHGLFCGPSFWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGH 111
E+ +EL+SS GAP E H F WKSTSFDRMQ AL+ FAVD+ SVS YIYH+LLGH
Sbjct: 401 EIAIELRSSVGAPVEVTHN-FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGH 459
Query: 112 NVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQG 155
V++V+ +C LPK F+A LPDLN SQVYAVK +QRPLSLIQG
Sbjct: 460 EVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQG 503
Score = 59 (25.8 bits), Expect = 3.4e-33, Sum P(2) = 3.4e-33
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 171 GIGNSANTNRLRNKSNLNHRPSGANKLSQGHLSQGNNSQEITQPYSQVMSQGGGFXXXXX 230
G+ + TN ++++ + + SQG L+QG S ++QP SQ+ G
Sbjct: 1037 GLPGPSQTNLPNSQAS---QDVASQPFSQGALTQGYIS--MSQP-SQMSQPGLSQPELSQ 1090
Query: 231 XXXXXXXMMSQLDGMLSQESAYLDHR 256
SQ+D LSQ+S Y R
Sbjct: 1091 DSYLGDEFKSQIDVALSQDSTYQGER 1116
>UNIPROTKB|E2RL81 [details] [associations]
symbol:UPF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] InterPro:IPR018999 Pfam:PF09416 GO:GO:0005524
GO:GO:0005737 GO:GO:0000184 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 GeneTree:ENSGT00550000074391 OMA:MFYEGSL
EMBL:AAEX03012279 Ensembl:ENSCAFT00000023180 Uniprot:E2RL81
Length = 1130
Score = 343 (125.8 bits), Expect = 3.4e-33, Sum P(2) = 3.4e-33
Identities = 67/104 (64%), Positives = 79/104 (75%)
Query: 52 EVGLELKSSAGAPTESYHGLFCGPSFWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGH 111
E+ +EL+SS GAP E H F WKSTSFDRMQ AL+ FAVD+ SVS YIYH+LLGH
Sbjct: 402 EIAIELRSSVGAPVEVTHN-FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGH 460
Query: 112 NVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQG 155
V++V+ +C LPK F+A LPDLN SQVYAVK +QRPLSLIQG
Sbjct: 461 EVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQG 504
Score = 59 (25.8 bits), Expect = 3.4e-33, Sum P(2) = 3.4e-33
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 171 GIGNSANTNRLRNKSNLNHRPSGANKLSQGHLSQGNNSQEITQPYSQVMSQGGGFXXXXX 230
G+ + TN ++++ + + SQG L+QG S ++QP SQ+ G
Sbjct: 1038 GLPGPSQTNLPNSQAS---QDVASQPFSQGALTQGYIS--MSQP-SQMSQPGLSQPELSQ 1091
Query: 231 XXXXXXXMMSQLDGMLSQESAYLDHR 256
SQ+D LSQ+S Y R
Sbjct: 1092 DSYLGDEFKSQIDVALSQDSTYQGER 1117
>MGI|MGI:107995 [details] [associations]
symbol:Upf1 "UPF1 regulator of nonsense transcripts homolog
(yeast)" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISO]
[GO:0000785 "chromatin" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006260 "DNA replication" evidence=ISO]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006449 "regulation of
translational termination" evidence=ISO] [GO:0007049 "cell cycle"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009048 "dosage compensation by inactivation of X chromosome"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=ISO] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=ISO] InterPro:IPR018999 Pfam:PF09416 MGI:MGI:107995
GO:GO:0005524 GO:GO:0000184 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0000785
GO:GO:0003682 GO:GO:0003723 GO:GO:0007049 GO:GO:0000932
eggNOG:COG1112 GO:GO:0071044 GO:GO:0009048 GO:GO:0004004
GO:GO:0035145 GO:GO:0006449 GeneTree:ENSGT00550000074391
HOGENOM:HOG000205990 KO:K14326 OMA:MFYEGSL CTD:5976
HOVERGEN:HBG061556 ChiTaRS:UPF1 EMBL:AF322655 EMBL:AY597039
EMBL:AY597038 EMBL:AK148196 EMBL:BC030916 EMBL:BC052149
EMBL:BC056442 EMBL:AF182947 IPI:IPI00420949 IPI:IPI00850525
RefSeq:NP_001116301.1 RefSeq:NP_109605.2 UniGene:Mm.390048
ProteinModelPortal:Q9EPU0 SMR:Q9EPU0 STRING:Q9EPU0
PhosphoSite:Q9EPU0 PaxDb:Q9EPU0 PRIDE:Q9EPU0
Ensembl:ENSMUST00000075666 GeneID:19704 KEGG:mmu:19704
UCSC:uc009mab.2 UCSC:uc012gfa.1 InParanoid:Q9EPU0 OrthoDB:EOG4P8FH8
NextBio:297078 Bgee:Q9EPU0 Genevestigator:Q9EPU0
GermOnline:ENSMUSG00000058301 Uniprot:Q9EPU0
Length = 1124
Score = 342 (125.4 bits), Expect = 5.5e-33, Sum P(2) = 5.5e-33
Identities = 67/104 (64%), Positives = 79/104 (75%)
Query: 52 EVGLELKSSAGAPTESYHGLFCGPSFWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGH 111
E+ +EL+SS GAP E H F WKSTSFDRMQ AL+ FAVD+ SVS YIYH+LLGH
Sbjct: 396 EIAIELRSSVGAPVEVTHN-FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGH 454
Query: 112 NVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQG 155
V++V+ +C LPK F+A LPDLN SQVYAVK +QRPLSLIQG
Sbjct: 455 EVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQG 498
Score = 58 (25.5 bits), Expect = 5.5e-33, Sum P(2) = 5.5e-33
Identities = 21/59 (35%), Positives = 27/59 (45%)
Query: 198 SQGHLSQGNNSQEITQPYSQVMSQGGGFXXXXXXXXXXXXMMSQLDGMLSQESAYLDHR 256
SQG L+QG S ++QP SQ+ G SQ+D LSQ+S Y R
Sbjct: 1056 SQGALTQGYVS--MSQP-SQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGER 1111
>FB|FBgn0030354 [details] [associations]
symbol:Upf1 "Upf1" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS;IMP;NAS] [GO:0005737 "cytoplasm"
evidence=IEA;NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0035195 "gene silencing by miRNA" evidence=IMP] [GO:0071456
"cellular response to hypoxia" evidence=IMP] [GO:0035145 "exon-exon
junction complex" evidence=IDA] InterPro:IPR018999 Pfam:PF09416
GO:GO:0005524 GO:GO:0005737 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 EMBL:AE014298 GO:GO:0008270 GO:GO:0071456
GO:GO:0004386 eggNOG:COG1112 GeneTree:ENSGT00550000074391 KO:K14326
OMA:MFYEGSL EMBL:AY061379 RefSeq:NP_572767.1 UniGene:Dm.3617
ProteinModelPortal:Q9VYS3 SMR:Q9VYS3 STRING:Q9VYS3 PaxDb:Q9VYS3
PRIDE:Q9VYS3 EnsemblMetazoa:FBtr0073596 GeneID:32153
KEGG:dme:Dmel_CG1559 UCSC:CG1559-RA CTD:5976 FlyBase:FBgn0030354
InParanoid:Q9VYS3 OrthoDB:EOG476HF1 PhylomeDB:Q9VYS3
GenomeRNAi:32153 NextBio:777131 Bgee:Q9VYS3 GermOnline:CG1559
Uniprot:Q9VYS3
Length = 1180
Score = 316 (116.3 bits), Expect = 5.4e-27, P = 5.4e-27
Identities = 71/108 (65%), Positives = 78/108 (72%)
Query: 52 EVGLELKSSAGAPTESYHGLFCGPSFWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGH 111
+VGLELKSS AP + F WK TSFDRM AL KFA+D SVS +IY RLLGH
Sbjct: 367 DVGLELKSSTNAPVKCTSN-FTVDFIWKCTSFDRMTRALCKFAIDRNSVSNFIYSRLLGH 425
Query: 112 ----NVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQG 155
+ DEVLFR PK FSAP+LPDLNRSQVYAVKHA+QRPLSLIQG
Sbjct: 426 GRADSNDEVLFRGPQPKLFSAPHLPDLNRSQVYAVKHALQRPLSLIQG 473
>UNIPROTKB|G4ND47 [details] [associations]
symbol:MGG_00976 "Regulator-nonsense transcripts 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR018999 Pfam:PF09416
GO:GO:0005524 GO:GO:0005737 EMBL:CM001235 GO:GO:0003677
GO:GO:0008270 GO:GO:0016567 GO:GO:0030466 GO:GO:0004386
GO:GO:0008298 InterPro:IPR014001 SMART:SM00487 GO:GO:0070478
KO:K14326 RefSeq:XP_003717973.1 ProteinModelPortal:G4ND47
SMR:G4ND47 EnsemblFungi:MGG_00976T0 GeneID:2674784
KEGG:mgr:MGG_00976 Uniprot:G4ND47
Length = 1105
Score = 289 (106.8 bits), Expect = 2.0e-26, Sum P(2) = 2.0e-26
Identities = 68/147 (46%), Positives = 87/147 (59%)
Query: 15 LDAGDELKLAATSYDASTPGSGPRSRGLRFRIILPVT---EVGLELKSSAG---APTESY 68
L GDE++L Y P+ G+ + + +P EV LEL+ S PTE
Sbjct: 334 LAVGDEMRL---KYKGELR---PQWEGVGYVVKIPNNQSDEVTLELRKSGNDKSVPTECT 387
Query: 69 HGLFCGPSFWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSA 128
H F WK+TS+DRMQLA+R FAVD+ SVS YI+H+LLGH V R +PK F+A
Sbjct: 388 HN-FSADYVWKATSYDRMQLAMRNFAVDEMSVSGYIFHKLLGHEVAVAPMRTTMPKKFTA 446
Query: 129 PNLPDLNRSQVYAVKHAIQRPLSLIQG 155
P LPDLN SQ+ A+K + PLSLIQG
Sbjct: 447 PGLPDLNGSQISAIKAVLSTPLSLIQG 473
Score = 49 (22.3 bits), Expect = 2.0e-26, Sum P(2) = 2.0e-26
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 162 GLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGANKLSQGHLSQGNNSQEITQPYSQVMSQ 221
GLH G + ++++RLR R +G N G+ ++ Q I+ ++ SQ
Sbjct: 1045 GLHDAVGAGRPTSYSHSDRLRQYVESGGRMTGPNN---GYRRYDDDQQSISTAFA---SQ 1098
Query: 222 GGG 224
GG
Sbjct: 1099 AGG 1101
Score = 41 (19.5 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 167 PGGAGIGNSANTNRLRNKSNL 187
PG G G S N NR R ++
Sbjct: 984 PGVPGHGRSGNRNRGRGAESI 1004
>TAIR|locus:2171007 [details] [associations]
symbol:LBA1 "LOW-LEVEL BETA-AMYLASE 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM;IDA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA;IMP] [GO:0016246 "RNA interference" evidence=IGI]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IMP] [GO:0005829 "cytosol" evidence=IDA;RCA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0009755 "hormone-mediated
signaling pathway" evidence=RCA] [GO:0048825 "cotyledon
development" evidence=RCA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0009744 "response to sucrose stimulus"
evidence=IGI] InterPro:IPR018999 Pfam:PF09416 GO:GO:0005829
GO:GO:0005886 GO:GO:0009506 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0016246 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0009744 GO:GO:0008270 GO:GO:0010182
GO:GO:0004386 GO:GO:0000932 eggNOG:COG1112 InterPro:IPR014001
PROSITE:PS51192 EMBL:AB013394 HOGENOM:HOG000205990 KO:K14326
OMA:MFYEGSL EMBL:AF484122 IPI:IPI00541997 RefSeq:NP_199512.2
UniGene:At.8584 ProteinModelPortal:Q9FJR0 SMR:Q9FJR0 STRING:Q9FJR0
PaxDb:Q9FJR0 PRIDE:Q9FJR0 EnsemblPlants:AT5G47010.1 GeneID:834747
KEGG:ath:AT5G47010 GeneFarm:2422 TAIR:At5g47010 InParanoid:Q9FJR0
PhylomeDB:Q9FJR0 ProtClustDB:CLSN2680462 Genevestigator:Q9FJR0
GermOnline:AT5G47010 Uniprot:Q9FJR0
Length = 1254
Score = 304 (112.1 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 69/138 (50%), Positives = 89/138 (64%)
Query: 18 GDELKLAATSYDASTPGSGPRSRGLRFRIILPVTEVGLELKSSAGAPTESYHGLFCGPSF 77
GDEL+L + DA P +S G ++ EV LEL+++ G P + HG F
Sbjct: 378 GDELRLRYSG-DAVHPSW--QSVGHVIKLTAQ-EEVALELRANQGVPIDVNHG-FSVDFV 432
Query: 78 WKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNLPDLNRS 137
WKSTSFDRMQ A++ FAVD+ SVS YIYH+LLGH V+ + R LP+ F P LP+LN S
Sbjct: 433 WKSTSFDRMQGAMKNFAVDETSVSGYIYHQLLGHEVEAQMVRNTLPRRFGVPGLPELNAS 492
Query: 138 QVYAVKHAIQRPLSLIQG 155
QV AVK +Q+P+SLIQG
Sbjct: 493 QVNAVKSVLQKPISLIQG 510
>ASPGD|ASPL0000056713 [details] [associations]
symbol:AN0646 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR003593 InterPro:IPR018999 Pfam:PF09416 SMART:SM00382
GO:GO:0005524 GO:GO:0005737 EMBL:BN001308 GO:GO:0003677
GO:GO:0008270 GO:GO:0016567 GO:GO:0030466 GO:GO:0004386
GO:GO:0008298 InterPro:IPR014001 SMART:SM00487 GO:GO:0070478
HOGENOM:HOG000205990 OMA:MFYEGSL ProteinModelPortal:C8VS08
EnsemblFungi:CADANIAT00002030 Uniprot:C8VS08
Length = 1077
Score = 300 (110.7 bits), Expect = 2.4e-25, P = 2.4e-25
Identities = 71/147 (48%), Positives = 89/147 (60%)
Query: 15 LDAGDELKLAATSYDASTPGSGPRSRGLRFRIILPVT---EVGLELKSSA---GAPTESY 68
L GDE++L Y T P+ G+ + I +P EV +EL++ PTE
Sbjct: 306 LAVGDEMRL---KY---TGELRPKWEGVGYVIKIPNNQSDEVTIELRAKGDHKSVPTECT 359
Query: 69 HGLFCGPSFWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSA 128
H F WKSTSFDRMQLA++ FAVD+ SVS YI+HRLLGH V + +PK FS
Sbjct: 360 HN-FTADYVWKSTSFDRMQLAMKTFAVDEMSVSGYIFHRLLGHEVAAAPMKTQMPKKFSV 418
Query: 129 PNLPDLNRSQVYAVKHAIQRPLSLIQG 155
P LP+LN SQ+ AVK +QRPLSLIQG
Sbjct: 419 PGLPELNGSQINAVKSVLQRPLSLIQG 445
>POMBASE|SPAC16C9.06c [details] [associations]
symbol:upf1 "ATP-dependent RNA helicase Upf1"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0002184 "cytoplasmic translational
termination" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006415
"translational termination" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR018999
Pfam:PF09416 SMART:SM00382 PomBase:SPAC16C9.06c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 eggNOG:COG1112 InterPro:IPR014001
SMART:SM00487 GO:GO:0004004 GO:GO:0002184 HOGENOM:HOG000205990
KO:K14326 OMA:MFYEGSL OrthoDB:EOG405W86 PIR:S62476
RefSeq:NP_593080.1 ProteinModelPortal:Q09820 SMR:Q09820
STRING:Q09820 PRIDE:Q09820 EnsemblFungi:SPAC16C9.06c.1
GeneID:2542327 KEGG:spo:SPAC16C9.06c NextBio:20803388
Uniprot:Q09820
Length = 925
Score = 274 (101.5 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 67/142 (47%), Positives = 82/142 (57%)
Query: 15 LDAGDELKLAATSYDASTPGSGPRSRGLRFRIILPVT-EVGLELKSSAGAPTESYHGLFC 73
L GDE+KL + P S S G +I V+ EVGLELK S P E H F
Sbjct: 278 LAIGDEMKLTYEG-ELRAPWS---STGYVIKIPNNVSDEVGLELKRSDKVPIECTHN-FS 332
Query: 74 GPSFWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNLPD 133
WKSTSFDRMQ ALR FA D +S+++YH+LLGH++ + LP S PNLP
Sbjct: 333 VDYVWKSTSFDRMQTALRLFATDGSRLSSFLYHKLLGHDIPPSFLKPKLPSDLSVPNLPK 392
Query: 134 LNRSQVYAVKHAIQRPLSLIQG 155
LN SQ AV+ + +PLSLIQG
Sbjct: 393 LNASQSEAVRAVLSKPLSLIQG 414
>SGD|S000004685 [details] [associations]
symbol:NAM7 "ATP-dependent RNA helicase of the SFI
superfamily" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=IMP] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=IGI;IMP] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0016567 "protein ubiquitination"
evidence=IMP;IDA;IPI] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005844 "polysome" evidence=TAS] [GO:0003676 "nucleic acid
binding" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA;TAS]
[GO:0006449 "regulation of translational termination" evidence=TAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030466 "chromatin
silencing at silent mating-type cassette" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006452 "translational frameshifting" evidence=IMP] [GO:0008186
"RNA-dependent ATPase activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR018999 Pfam:PF09416 SMART:SM00382 SGD:S000004685
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003676 GO:GO:0016567
GO:GO:0030466 EMBL:BK006946 EMBL:Z49259 GO:GO:0005844 GO:GO:0008298
eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487 GO:GO:0004004
GO:GO:0070478 GO:GO:0006449 GeneTree:ENSGT00550000074391
EMBL:X62394 EMBL:M76659 PIR:S23408 RefSeq:NP_013797.1 PDB:2XZL
PDBsum:2XZL ProteinModelPortal:P30771 SMR:P30771 DIP:DIP-2373N
IntAct:P30771 MINT:MINT-492322 STRING:P30771 PaxDb:P30771
PeptideAtlas:P30771 EnsemblFungi:YMR080C GeneID:855104
KEGG:sce:YMR080C CYGD:YMR080c HOGENOM:HOG000205990 KO:K14326
OMA:MFYEGSL OrthoDB:EOG405W86 EvolutionaryTrace:P30771
NextBio:978431 Genevestigator:P30771 GermOnline:YMR080C
Uniprot:P30771
Length = 971
Score = 263 (97.6 bits), Expect = 1.8e-21, P = 1.8e-21
Identities = 55/102 (53%), Positives = 67/102 (65%)
Query: 55 LELK-SSAGAPTESYHGLFCGPSFWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNV 113
LELK S PT G F WK TS+DRMQ AL+KFA+D +S+S Y+Y+++LGH V
Sbjct: 330 LELKPSKTPPPTHLTTG-FTAEFIWKGTSYDRMQDALKKFAIDKKSISGYLYYKILGHQV 388
Query: 114 DEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQG 155
++ F LPK FS PN LN SQ AV H +QRPLSLIQG
Sbjct: 389 VDISFDVPLPKEFSIPNFAQLNSSQSNAVSHVLQRPLSLIQG 430
>CGD|CAL0003666 [details] [associations]
symbol:NAM7 species:5476 "Candida albicans" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0005829 "cytosol" evidence=IEA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IEA] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
InterPro:IPR003593 InterPro:IPR018999 Pfam:PF09416 SMART:SM00382
CGD:CAL0003666 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0003677 GO:GO:0008270 GO:GO:0004386 eggNOG:COG1112
InterPro:IPR014001 SMART:SM00487 EMBL:AACQ01000063
EMBL:AACQ01000062 KO:K14326 RefSeq:XP_716778.1 RefSeq:XP_716838.1
ProteinModelPortal:Q5A507 SMR:Q5A507 STRING:Q5A507 GeneID:3641489
GeneID:3641540 KEGG:cal:CaO19.8554 KEGG:cal:CaO19.939
Uniprot:Q5A507
Length = 1019
Score = 246 (91.7 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 53/104 (50%), Positives = 65/104 (62%)
Query: 52 EVGLELKSSAGAPTESYHGLFCGPSFWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGH 111
E LEL S P F WK TS+DRMQ A++ FA D++SVS++IYH+LLGH
Sbjct: 359 EFTLELNPSKIIPPTQLTTDFTAEFVWKGTSYDRMQQAMKDFATDEESVSSFIYHKLLGH 418
Query: 112 NVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQG 155
V + F LPK FS P L +LN SQ AV+ +QRPLSLIQG
Sbjct: 419 EVLPIEFDIDLPKKFSHPKLTELNVSQTNAVRTVLQRPLSLIQG 462
>UNIPROTKB|Q5A507 [details] [associations]
symbol:NAM7 "Putative uncharacterized protein NAM7"
species:237561 "Candida albicans SC5314" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR003593 InterPro:IPR018999
Pfam:PF09416 SMART:SM00382 CGD:CAL0003666 GO:GO:0005524
GO:GO:0005737 GO:GO:0000184 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 eggNOG:COG1112 InterPro:IPR014001 SMART:SM00487
EMBL:AACQ01000063 EMBL:AACQ01000062 KO:K14326 RefSeq:XP_716778.1
RefSeq:XP_716838.1 ProteinModelPortal:Q5A507 SMR:Q5A507
STRING:Q5A507 GeneID:3641489 GeneID:3641540 KEGG:cal:CaO19.8554
KEGG:cal:CaO19.939 Uniprot:Q5A507
Length = 1019
Score = 246 (91.7 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 53/104 (50%), Positives = 65/104 (62%)
Query: 52 EVGLELKSSAGAPTESYHGLFCGPSFWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGH 111
E LEL S P F WK TS+DRMQ A++ FA D++SVS++IYH+LLGH
Sbjct: 359 EFTLELNPSKIIPPTQLTTDFTAEFVWKGTSYDRMQQAMKDFATDEESVSSFIYHKLLGH 418
Query: 112 NVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQG 155
V + F LPK FS P L +LN SQ AV+ +QRPLSLIQG
Sbjct: 419 EVLPIEFDIDLPKKFSHPKLTELNVSQTNAVRTVLQRPLSLIQG 462
>WB|WBGene00004880 [details] [associations]
symbol:smg-2 species:6239 "Caenorhabditis elegans"
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IGI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA;TAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0030538
"embryonic genitalia morphogenesis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0051721 "protein phosphatase 2A
binding" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR018999 Pfam:PF09416 SMART:SM00382
EMBL:AF074017 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016246 GO:GO:0000184 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003723 GO:GO:0040035 eggNOG:COG1112
GO:GO:0004004 GO:GO:0030538 HOGENOM:HOG000205990 KO:K14326
EMBL:FO081800 PIR:T43280 RefSeq:NP_490829.1
ProteinModelPortal:O76512 SMR:O76512 MINT:MINT-255670 STRING:O76512
PaxDb:O76512 GeneID:171696 KEGG:cel:CELE_Y48G8AL.6 UCSC:Y48G8AL.6
CTD:171696 WormBase:Y48G8AL.6 InParanoid:O76512 NextBio:872341
Uniprot:O76512
Length = 1069
Score = 216 (81.1 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 52/144 (36%), Positives = 77/144 (53%)
Query: 15 LDAGDELKLAATSYDASTPGSGPRSRGLRFRIILPVT---EVGLELKSSAGAPTESYHGL 71
L GDEL+L + + GS G F+I P EVG+E++ + +
Sbjct: 329 LAKGDELRL---KHSQTVDGSEWTKIGSVFKI--PDNHGDEVGIEIRGAVDKSVMESRIM 383
Query: 72 FCGPSFWKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNL 131
F W +T+F+R AL D +++S Y+Y +LLGH +E++ + LP+ S L
Sbjct: 384 FTVDVVWNATTFERQYKALAALLNDSKAISPYLYQKLLGHPAEEMMLKFDLPRRLSVAGL 443
Query: 132 PDLNRSQVYAVKHAIQRPLSLIQG 155
P+LN SQ+ AVK + RPLSLIQG
Sbjct: 444 PELNSSQMQAVKQVLTRPLSLIQG 467
>DICTYBASE|DDB_G0288923 [details] [associations]
symbol:upf1 "regulator of nonsense transcripts 1"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;IC] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR018999 Pfam:PF09416 dictyBase:DDB_G0288923
GO:GO:0005524 GO:GO:0005737 GO:GO:0000184 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AAFI02000126
GenomeReviews:CM000154_GR GO:GO:0003676 eggNOG:COG1112
GO:GO:0004004 KO:K14326 RefSeq:XP_636490.1
ProteinModelPortal:Q54I89 SMR:Q54I89 STRING:Q54I89
EnsemblProtists:DDB0233746 GeneID:8626873 KEGG:ddi:DDB_G0288923
InParanoid:Q54I89 Uniprot:Q54I89
Length = 1331
Score = 189 (71.6 bits), Expect = 5.8e-16, Sum P(2) = 5.8e-16
Identities = 52/139 (37%), Positives = 73/139 (52%)
Query: 18 GDELKLAATSYDASTPGSGPRSRGLRFRIILPVTEVGLELKSSAGAPTESYHGLFCGPSF 77
GDELKL + +ST G R I + LE KS + G +
Sbjct: 424 GDELKL---QFISSTGGVIEWEDTGRVIHIDDENLLSLETKSRCSFDSGP-KGSYRMEMV 479
Query: 78 WKSTSFDRMQLALRKFAVDDQSVSAYIYHRLLGH-NVDEVLFRCHLPKHFSAPNLPDLNR 136
W+STS +R+ A++ FA+ +Q++S+Y+YH LLGH ++ LP +F NLP LN
Sbjct: 480 WRSTSSERILSAMKSFAIKEQALSSYLYHALLGHPDIPPAPLDIQLPTNFHLKNLPRLNE 539
Query: 137 SQVYAVKHAIQRPLSLIQG 155
SQ+ AV + PLSLIQG
Sbjct: 540 SQISAVNKVLTAPLSLIQG 558
Score = 52 (23.4 bits), Expect = 5.8e-16, Sum P(2) = 5.8e-16
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 157 NQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGANKLSQGHLSQGNNSQEITQP 214
N +N ++ I N+ + N+ +N+S G +L SQ NN++ I+ P
Sbjct: 1238 NNNNNNNNNNNNNNNINNNNSKNQNQNQSPRRSPVVGTLQLHCKFDSQPNNNKHISDP 1295
Score = 47 (21.6 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 174 NSANTNRLRNKSNLNHRPSGANKLSQGHLSQGNNSQE 210
N+ N N + N +N N+ + N + + + NN+ +
Sbjct: 1223 NNNNNNNINNNNNNNNNNNNNNNNNNNNNNINNNNSK 1259
Score = 47 (21.6 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 144 HAIQRPLSLIQGMNQRSNGLHHQPGGAGIGNSANTNRLRNKSNLNHRPSGANKLSQGHLS 203
H Q P Q NQR N ++ I N+ N N N +N N+ + N ++ +
Sbjct: 1208 HQSQLPPK--QYHNQRFNNNNNN----NINNNNNNNN--NNNNNNNNNNNNNNINNNNSK 1259
Query: 204 QGNNSQ 209
N +Q
Sbjct: 1260 NQNQNQ 1265
Score = 42 (19.8 bits), Expect = 6.4e-15, Sum P(2) = 6.4e-15
Identities = 12/49 (24%), Positives = 17/49 (34%)
Query: 174 NSANTNRLRNKSNLNHRPSGANKLSQGHLSQGNNSQEITQPYSQVMSQG 222
N+ N N + N N+N+ + G S S Y S G
Sbjct: 1036 NNNNNNNINN--NINNNNNQRFNTQDGRYSNSQTSSSSQTYYGSTNSSG 1082
Score = 41 (19.5 bits), Expect = 8.1e-15, Sum P(2) = 8.1e-15
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 172 IGNSANTNRLRNKSNLNHRPSGANKLSQGHLSQGNNSQEITQPYSQ 217
I N++N N +N+N+ + N + + G S T SQ
Sbjct: 1028 INNNSNNINNNNNNNINNNINNNNN-QRFNTQDGRYSNSQTSSSSQ 1072
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 266 254 0.00084 114 3 11 22 0.48 33
32 0.47 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 600 (64 KB)
Total size of DFA: 188 KB (2107 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.97u 0.11s 25.08t Elapsed: 00:00:06
Total cpu time: 24.97u 0.11s 25.08t Elapsed: 00:00:06
Start: Thu Aug 15 12:49:07 2013 End: Thu Aug 15 12:49:13 2013