RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4476
         (266 letters)



>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
           (RecD) {Escherichia coli [TaxId: 562]}
          Length = 359

 Score = 41.4 bits (96), Expect = 6e-05
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 83  FDRMQLALRKFAVDDQSVSAYIYHRLLGHNVDEVLFRCHLPKHFSAPNLPDLNRSQVYAV 142
               +L L +   ++++V+ +         VDE L    L K F      D    Q  A 
Sbjct: 101 LCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVS---DEINWQKVAA 157

Query: 143 KHAIQRPLSLIQG 155
             A+ R +S+I G
Sbjct: 158 AVALTRRISVISG 170


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0458    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 904,836
Number of extensions: 37577
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,254,276
Effective search space: 228278232
Effective search space used: 228278232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.5 bits)