BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4479
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RSM|A Chain A, Solution Structure And Sirna-Mediated Knockdown Analysis
Of The Mitochondrial Disease-Related Protein C12orf65
(Ict2)
Length = 115
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 59/78 (75%)
Query: 21 DYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKT 80
DY + ++E +++E+FV+G GPGGQA KT+NCVVL H+P+GIV+KCHQ+RS+ +NRK
Sbjct: 36 DYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKI 95
Query: 81 ARELLVAQWDVQVNGEDS 98
AR++L + DV N S
Sbjct: 96 ARKVLQEKVDVFYNSGPS 113
>pdb|2FVO|A Chain A, Docking Of The Modified Rf1 X-ray Structure Into The Low
Resolution Cryo-em Map Of E.coli 70s Ribosome Bound With
Rf1
Length = 333
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 7/70 (10%)
Query: 25 VPKIDEKDIQER-------FVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSEN 77
+P+I+EKDI+ R R SG GGQ V KT + V +TH+PTGIV+ C RS +N
Sbjct: 183 LPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQN 242
Query: 78 RKTARELLVA 87
++TA +L A
Sbjct: 243 KQTALRILRA 252
>pdb|1RQ0|A Chain A, Crystal Structure Of Peptide Releasing Factor 1
pdb|1RQ0|B Chain B, Crystal Structure Of Peptide Releasing Factor 1
pdb|1RQ0|C Chain C, Crystal Structure Of Peptide Releasing Factor 1
Length = 342
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 7/70 (10%)
Query: 25 VPKIDEKDIQER-------FVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSEN 77
+P+I+EKDI+ R R SG GGQ V KT + V +TH+PTGIV+ C RS +N
Sbjct: 183 LPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQN 242
Query: 78 RKTARELLVA 87
++TA +L A
Sbjct: 243 KQTALRILRA 252
>pdb|1MI6|A Chain A, Docking Of The Modified Rf2 X-Ray Structure Into The Low
Resolution Cryo-Em Map Of Rf2 E.Coli 70s Ribosome
Length = 365
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
RRH S SS F ++D +I+ D++ R SG GGQ V +T + V +THIPTGI
Sbjct: 212 RRHTSF-SSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGI 270
Query: 65 VIKCHQSRSLSENRKTARELLVAQ 88
V +C RS +N+ A + + A+
Sbjct: 271 VTQCQNDRSQHKNKDQAMKQMKAK 294
>pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2) From Escherichia
Coli
Length = 365
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
RRH S SS F ++D +I+ D++ R SG GGQ V +T + V +THIPTGI
Sbjct: 212 RRHTSF-SSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGI 270
Query: 65 VIKCHQSRSLSENRKTA 81
V +C RS +N+ A
Sbjct: 271 VTQCQNDRSQHKNKDQA 287
>pdb|1ML5|Z Chain Z, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
Length = 365
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
RRH S SS F ++D +I+ D++ R SG GGQ V +T + V +THIPTGI
Sbjct: 212 RRHTSF-SSAFVYPEVDDDIDIEINPADLRIDVYRTSGAGGQHVNRTESAVRITHIPTGI 270
Query: 65 VIKCHQSRSLSENRKTA 81
V +C RS +N+ A
Sbjct: 271 VTQCQNDRSQHKNKDQA 287
>pdb|2B64|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Subunit, Trnas, Mrna And
Release Factor Rf1 From A Crystal Structure Of The Whole
Ribosomal Complex". The Entire Crystal Structure
Contains One 70s Ribosome, Trnas, Mrna And Release
Factor Rf1 And Is Described In Remark 400.
pdb|3D5A|X Chain X, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 30s Subunit, Release
Factor 1 (Rf1), Two Trna, And Mrna Molecules Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5C|X Chain X, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 30s Subunit, Release
Factor 1 (Rf1), Two Trna, And Mrna Molecules Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3MR8|V Chain V, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3mr8 Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 3ms1.
Molecule B In The Same Asymmetric Unit Is Deposited As
3mrz (50s) And 3ms0 (30s).
pdb|3MS0|V Chain V, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3ms0 Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 3mrz.
Molecule A In The Same Asymmetric Unit Is Deposited As
3mr8 (30s) And 3ms1 (50s)
Length = 354
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 7/68 (10%)
Query: 25 VPKIDEKD-------IQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSEN 77
+PK +E+D I+ +R SGPGGQ V T++ V + H+PTGI++ C SRS +N
Sbjct: 202 LPKAEEEDFALNMDEIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVTCQDSRSQIKN 261
Query: 78 RKTARELL 85
R+ A +L
Sbjct: 262 REKALMIL 269
>pdb|2B3T|B Chain B, Molecular Basis For Bacterial Class 1 Release Factor
Methylation By Prmc
Length = 360
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%)
Query: 19 DLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENR 78
+L +++P ++ D++ R SG GGQ V T++ + +TH+PTGIV++C RS +N+
Sbjct: 208 ELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNK 267
Query: 79 KTARELLVA 87
A +L A
Sbjct: 268 AKALSVLGA 276
>pdb|2B9M|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Ribosomal Subunit, Trnas,
Mrna And Release Factor Rf2 From A Crystal Structure Of
The Whole Ribosomal Complex". The Entire Crystal
Structure Contains One 70s Ribosome, Trnas, Mrna And
Release Factor Rf2 And Is Described In Remark 400
Length = 365
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 38 VRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQ 88
+R SGPGGQ V T++ V + H+PTGI + C +RS +N++ A ++L A+
Sbjct: 232 MRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKAR 282
>pdb|2IHR|1 Chain 1, Rf2 Of Thermus Thermophilus
Length = 365
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 38 VRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQ 88
+R SGPGGQ V T++ V + H+PTGI + C +RS +N++ A ++L A+
Sbjct: 232 MRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKAR 282
>pdb|3F1E|X Chain X, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One
70s Ribosome. The Entire Crystal Structure Contains Two
70s Ribosomes As Described In Remark 400.
pdb|3F1G|X Chain X, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
30s Subunit, Rf2, Two Trna, And Mrna Molecules Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400
Length = 378
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 38 VRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQ 88
+R SGPGGQ V T++ V + H+PTGI + C +RS +N++ A ++L A+
Sbjct: 245 MRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKAR 295
>pdb|2X9R|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9T|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
Length = 351
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 38 VRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQ 88
+R SGPGGQ V T++ V + H+PTGI + C +RS +N++ A ++L A+
Sbjct: 227 MRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKAR 277
>pdb|2WH1|Y Chain Y, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2WH3|Y Chain Y, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome). This File Contains The
30s Subunit
Length = 351
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 38 VRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQ 88
+R SGPGGQ V T++ V + H+PTGI + C +RS +N++ A ++L A+
Sbjct: 227 MRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKAR 277
>pdb|1ZBT|A Chain A, Crystal Structure Of Peptide Chain Release Factor 1 (rf-1)
(smu.1085) From Streptococcus Mutans At 2.34 A
Resolution
Length = 371
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 28 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 87
ID KD++ SG GGQ V K V + H+PT I ++ + R+ +NR A +++ A
Sbjct: 230 IDPKDLRVDIYHASGAGGQNVNKVATAVRIIHLPTNIKVEXQEERTQQKNRDKAXKIIRA 289
>pdb|2INP|L Chain L, Structure Of The Phenol Hydroxylase-Regulatory Protein
Complex
Length = 89
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 45 GQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQ 92
+AV + N + H P +I+ + L NR+T E L WDVQ
Sbjct: 19 AEAVMEDNPDAEMQHQPA--MIRIQAEKRLVINRETMEEKLGRDWDVQ 64
>pdb|1JPM|A Chain A, L-ala-d/l-glu Epimerase
pdb|1JPM|B Chain B, L-ala-d/l-glu Epimerase
pdb|1JPM|C Chain C, L-ala-d/l-glu Epimerase
pdb|1JPM|D Chain D, L-ala-d/l-glu Epimerase
pdb|1TKK|A Chain A, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|B Chain B, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|C Chain C, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|D Chain D, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|E Chain E, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|F Chain F, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|G Chain G, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|H Chain H, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
Length = 366
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 95 GEDSLNAQIRRIDEKRRATQEQKKRKLDALKKAWKEREGI 134
G+D + I RI E R+ K +LDA + W+ +E +
Sbjct: 164 GKDDIATDIARIQEIRKRVGSAVKLRLDA-NQGWRPKEAV 202
>pdb|3CEH|A Chain A, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEH|B Chain B, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEJ|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEJ|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEM|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
pdb|3CEM|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
Length = 809
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 76 ENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRR 111
EN+ + L ++ V++N + Q++RI E +R
Sbjct: 518 ENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKR 553
>pdb|1XOI|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
pdb|1XOI|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
Length = 846
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 76 ENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRR 111
EN+ + L ++ V++N + Q++RI E +R
Sbjct: 540 ENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKR 575
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1L5Q|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5Q|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5R|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5R|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5S|A Chain A, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L5S|B Chain B, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|A Chain A, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|B Chain B, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
Length = 847
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 76 ENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRR 111
EN+ + L ++ V++N + Q++RI E +R
Sbjct: 541 ENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKR 576
>pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|2ATI|A Chain A, Glycogen Phosphorylase Inhibitors
pdb|2ATI|B Chain B, Glycogen Phosphorylase Inhibitors
Length = 846
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 76 ENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRR 111
EN+ + L ++ V++N + Q++RI E +R
Sbjct: 540 ENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKR 575
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp
Length = 846
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 76 ENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRR 111
EN+ + L ++ V++N + Q++RI E +R
Sbjct: 540 ENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKR 575
>pdb|2ZB2|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
pdb|2ZB2|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
Length = 849
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 76 ENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRR 111
EN+ + L ++ V++N + Q++RI E +R
Sbjct: 543 ENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKR 578
>pdb|3DDS|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDS|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDW|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DDW|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DD1|A Chain A, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
pdb|3DD1|B Chain B, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
Length = 848
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 76 ENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRR 111
EN+ + L ++ V++N + Q++RI E +R
Sbjct: 542 ENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKR 577
>pdb|2QLL|A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex
Length = 847
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 76 ENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRR 111
EN+ + L ++ V++N + Q++RI E +R
Sbjct: 541 ENKLKFSQFLETEYKVKINPSSMFDVQVKRIHEYKR 576
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,758,285
Number of Sequences: 62578
Number of extensions: 133438
Number of successful extensions: 362
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 55
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)