BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4479
(135 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H3J6|CL065_HUMAN Probable peptide chain release factor C12orf65, mitochondrial
OS=Homo sapiens GN=C12orf65 PE=2 SV=1
Length = 166
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 62/78 (79%)
Query: 21 DYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKT 80
DY + +DE +++E+FV+G GPGGQA KT+NCVVL HIP+GIV+KCHQ+RS+ +NRK
Sbjct: 48 DYPALLSLDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKL 107
Query: 81 ARELLVAQWDVQVNGEDS 98
AR++L + DV NGE+S
Sbjct: 108 ARKILQEKVDVFYNGENS 125
>sp|A5WUX7|CL065_DANRE Probable peptide chain release factor C12orf65 homolog,
mitochondrial OS=Danio rerio GN=si:ch211-275j6.5 PE=3
SV=1
Length = 156
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 82/114 (71%), Gaps = 6/114 (5%)
Query: 9 SLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKC 68
S+ + +KY ++ +P + E++++E+FVRGSGPGGQA KT+NCVVL HIP+GIV+KC
Sbjct: 26 SVLPAAGKKYQIE---LPVVHEEELEEQFVRGSGPGGQATNKTSNCVVLRHIPSGIVVKC 82
Query: 69 HQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLD 122
H++RS+ NRK ARE+L + +V GE+S ++ ++ ++ ++ K+RK++
Sbjct: 83 HETRSVDLNRKRAREILREKLEVAYKGEES---ELLKMKKESMQKKQDKRRKVN 133
>sp|Q80VP5|CL065_MOUSE Probable peptide chain release factor C12orf65 homolog,
mitochondrial OS=Mus musculus PE=1 SV=1
Length = 184
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 62/78 (79%)
Query: 21 DYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKT 80
DY + ++E +++E+FV+G GPGGQA KT+NCVVL H+P+GIV+KCHQ+RS+ +NRK
Sbjct: 51 DYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKI 110
Query: 81 ARELLVAQWDVQVNGEDS 98
AR++L + DV NGE+S
Sbjct: 111 ARKVLQEKVDVFYNGENS 128
>sp|A0RQM7|RF2_CAMFF Peptide chain release factor 2 OS=Campylobacter fetus subsp. fetus
(strain 82-40) GN=prfB PE=3 SV=1
Length = 369
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
RRH S +S + ++D +I+EKD++ + R SG GGQ V KT + V +THIPTGI
Sbjct: 211 RRHTSFSSVMVSP-EVDDDIAIEIEEKDLRLDYYRASGAGGQHVNKTESAVRITHIPTGI 269
Query: 65 VIKCHQSRSLSENRKTARELL 85
V++C RS +N+ TA ++L
Sbjct: 270 VVQCQNDRSQHKNKATAMKML 290
>sp|A6Q582|RF2_NITSB Peptide chain release factor 2 OS=Nitratiruptor sp. (strain
SB155-2) GN=prfB PE=3 SV=1
Length = 368
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 5 RRHLSLASSLFR-KYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTG 63
RRH S AS + + D D + V I++KDI+ R SG GGQ V KT++ + +THIPTG
Sbjct: 211 RRHTSFASVMVSPEVDDDINIV--IEDKDIRVDTYRASGAGGQHVNKTDSAIRITHIPTG 268
Query: 64 IVIKCHQSRSLSENRKTARELL 85
IV++C RS +NR TA ++L
Sbjct: 269 IVVQCQNDRSQHKNRATAMKML 290
>sp|O67695|RF2_AQUAE Peptide chain release factor 2 OS=Aquifex aeolicus (strain VF5)
GN=prfB PE=3 SV=1
Length = 373
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 17/92 (18%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDE--------KDIQERFVRGSGPGGQAVAKTNNCVV 56
RRH S A+ S +P+IDE +D++ R SG GGQ V KT+ V
Sbjct: 210 RRHTSFAAV---------SVMPQIDEDIKIEIKPEDLKIETFRASGAGGQYVNKTDTAVR 260
Query: 57 LTHIPTGIVIKCHQSRSLSENRKTARELLVAQ 88
+THIPTGI + C Q RS +N++ A ELL A+
Sbjct: 261 ITHIPTGITVSCQQERSQYQNKRKALELLKAK 292
>sp|A7I0P7|RF2_CAMHC Peptide chain release factor 2 OS=Campylobacter hominis (strain
ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=prfB
PE=3 SV=1
Length = 364
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
RRH S AS + +LD IDEKD++ + R SG GGQ V KT + V +THIPT I
Sbjct: 211 RRHTSFASVVVSP-ELDDDIQINIDEKDLRIDYYRSSGAGGQHVNKTESAVRITHIPTNI 269
Query: 65 VIKCHQSRSLSENRKTARELL 85
V++C R +N+ +A ++L
Sbjct: 270 VVQCQNDRDQHKNKASAMKVL 290
>sp|Q53915|RF2_STRCO Peptide chain release factor 2 OS=Streptomyces coelicolor (strain
ATCC BAA-471 / A3(2) / M145) GN=prfB PE=3 SV=2
Length = 368
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 20/99 (20%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 86
+IDE +++ R SGPGGQ V T++ V LTHIPTGIV+ C RS +N+ TA +L
Sbjct: 232 EIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHIPTGIVVSCQNERSQIQNKATAMNVLQ 291
Query: 87 AQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDALK 125
A ++ E+RR ++++ K+DALK
Sbjct: 292 A-----------------KLLERRR---QEEQAKMDALK 310
>sp|A1SHH9|RF1_NOCSJ Peptide chain release factor 1 OS=Nocardioides sp. (strain BAA-499
/ JS614) GN=prfA PE=3 SV=1
Length = 357
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA----- 81
+IDE D++ R SGPGGQ+V T++ V +TH+PTGIV+ C +S +NR+ A
Sbjct: 215 QIDENDLRIDVFRSSGPGGQSVNTTDSAVRITHLPTGIVVSCQNEKSQLQNREQAMRILR 274
Query: 82 -RELLVAQWDVQVNGEDSLNAQIRRIDEKRR 111
R L AQ ++ +Q+R +D R
Sbjct: 275 SRLLAAAQEKADAEAGEARRSQVRTVDRSER 305
>sp|A1W9H4|RF2_ACISJ Peptide chain release factor 2 OS=Acidovorax sp. (strain JS42)
GN=prfB PE=3 SV=1
Length = 367
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 6 RHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIV 65
RH S AS LF ++D S I+ D++ R SG GGQ + KT++ V LTHIPTGIV
Sbjct: 215 RHTSFAS-LFVYPEIDDSIEININPSDVRTDTYRASGAGGQHINKTDSAVRLTHIPTGIV 273
Query: 66 IKCHQSRSLSENRKTA 81
++C RS NR A
Sbjct: 274 VQCQDGRSQHSNRDVA 289
>sp|B9MBK7|RF2_ACIET Peptide chain release factor 2 OS=Acidovorax ebreus (strain TPSY)
GN=prfB PE=3 SV=1
Length = 367
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 6 RHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIV 65
RH S AS LF ++D S I+ D++ R SG GGQ + KT++ V LTHIPTGIV
Sbjct: 215 RHTSFAS-LFVYPEIDDSIEININPSDVRTDTYRASGAGGQHINKTDSAVRLTHIPTGIV 273
Query: 66 IKCHQSRSLSENRKTA 81
++C RS NR A
Sbjct: 274 VQCQDGRSQHSNRDVA 289
>sp|Q9Y811|YONI_SCHPO Uncharacterized peptide chain release factor-like protein
C1105.18c, mitochondrial OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC1105.18c PE=3 SV=2
Length = 162
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 24 KVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARE 83
++ ++ E+DI+E F+ G GPGGQ + KT+ + HIPTGI+++ +RS +NR AR+
Sbjct: 43 QLERLQEEDIEETFICGKGPGGQKINKTSIVAQVKHIPTGIIVRSQDTRSREQNRCIARK 102
Query: 84 LLVAQWDVQVNGEDSLNA-QIRRI 106
L + D +G DSL A +++RI
Sbjct: 103 RLTEKVDEFKHGNDSLLARKVQRI 126
>sp|C5CUX0|RF2_VARPS Peptide chain release factor 2 OS=Variovorax paradoxus (strain
S110) GN=prfB PE=3 SV=1
Length = 367
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 6 RHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIV 65
RH S AS +F ++D S +I+ D++ R SG GGQ + KT++ V LTHIPTGIV
Sbjct: 215 RHTSFAS-IFVYPEIDDSIEIEINPADVRTDTFRASGAGGQHINKTDSAVRLTHIPTGIV 273
Query: 66 IKCHQSRSLSENRKTA 81
++C RS NR A
Sbjct: 274 VQCQDGRSQHSNRDVA 289
>sp|B4SHV0|RF2_STRM5 Peptide chain release factor 2 OS=Stenotrophomonas maltophilia
(strain R551-3) GN=prfB PE=3 SV=1
Length = 374
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
RRH S +S+F ++D + I+ D++ R SG GGQ V KT + V +THIPT I
Sbjct: 212 RRHTSF-TSVFVSPEIDDNIDITINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNI 270
Query: 65 VIKCHQSRSLSENRKTARELLVAQ 88
V+ C RS +NR A ++L A+
Sbjct: 271 VVACQTGRSQHQNRDNAMKMLAAK 294
>sp|Q9A752|RF2_CAUCR Peptide chain release factor 2 OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=prfB PE=3 SV=1
Length = 371
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 2 SIFRRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIP 61
S RRH S AS+ D ++ +I+ D++ R SG GGQ + KT++ V LTHIP
Sbjct: 204 SSARRHTSFASAWVYPVVDDNIEI-EINPSDVRTDTYRASGAGGQHINKTDSAVRLTHIP 262
Query: 62 TGIVIKCHQSRSLSENRKTARELLVA 87
TGI + C RS +NR+ A ++L A
Sbjct: 263 TGIAVACQAGRSQHQNREEAWKMLRA 288
>sp|B8GWM3|RF2_CAUCN Peptide chain release factor 2 OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=prfB PE=3 SV=1
Length = 371
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 2 SIFRRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIP 61
S RRH S AS+ D ++ +I+ D++ R SG GGQ + KT++ V LTHIP
Sbjct: 204 SSARRHTSFASAWVYPVVDDNIEI-EINPSDVRTDTYRASGAGGQHINKTDSAVRLTHIP 262
Query: 62 TGIVIKCHQSRSLSENRKTARELLVA 87
TGI + C RS +NR+ A ++L A
Sbjct: 263 TGIAVACQAGRSQHQNREEAWKMLRA 288
>sp|Q0HYK8|RF1_SHESR Peptide chain release factor 1 OS=Shewanella sp. (strain MR-7)
GN=prfA PE=3 SV=1
Length = 363
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 16/120 (13%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
R H S A ++ +++ ++ I+ D++ R SG GGQ V KT++ + +THIPTGI
Sbjct: 197 RVHTS-AVTVVVMHEVPEAEAISINPADLKVDTFRSSGAGGQHVNKTDSAIRITHIPTGI 255
Query: 65 VIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKLDA 123
V++C RS +NR A +L A+I+ + DEKRR+ +E +R L A
Sbjct: 256 VVECQDQRSQHKNRAQAMSVLA--------------ARIQAVEDEKRRSAEESTRRSLVA 301
>sp|Q0HFC8|RF1_SHESM Peptide chain release factor 1 OS=Shewanella sp. (strain MR-4)
GN=prfA PE=3 SV=1
Length = 363
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 16/120 (13%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
R H S A ++ +++ ++ I+ D++ R SG GGQ V KT++ + +THIPTGI
Sbjct: 197 RVHTS-AVTVVVMHEVPEAEAISINPADLKVDTFRSSGAGGQHVNKTDSAIRITHIPTGI 255
Query: 65 VIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKLDA 123
V++C RS +NR A +L A+I+ + DEKRR+ +E +R L A
Sbjct: 256 VVECQDQRSQHKNRAQAMSVLA--------------ARIQAVEDEKRRSAEESTRRSLVA 301
>sp|Q82D82|RF2_STRAW Peptide chain release factor 2 OS=Streptomyces avermitilis (strain
ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL
8165 / MA-4680) GN=prfB PE=3 SV=1
Length = 368
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 20/99 (20%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 86
+IDE +++ R SGPGGQ V T++ V LTH+PTGIV+ C RS +N+ +A +L
Sbjct: 232 EIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQNKASAMNVL- 290
Query: 87 AQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDALK 125
Q + +D +R ++++ K+DALK
Sbjct: 291 ---------------QAKLLDRRR----QEEQAKMDALK 310
>sp|B8GLA1|RF1_THISH Peptide chain release factor 1 OS=Thioalkalivibrio sp. (strain
HL-EbGR7) GN=prfA PE=3 SV=1
Length = 361
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 21 DYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKT 80
D + P+I+ D++ R SG GGQ V KT++ + LTH+PTGIV++C RS +NR
Sbjct: 212 DEVEAPEINPADLRVDTYRASGAGGQHVNKTDSAIRLTHLPTGIVVECQDERSQHKNRAR 271
Query: 81 ARELLVAQW 89
A LL A+
Sbjct: 272 AMSLLAAKL 280
>sp|Q7VIE6|RF2_HELHP Peptide chain release factor 2 OS=Helicobacter hepaticus (strain
ATCC 51449 / 3B1) GN=prfB PE=3 SV=1
Length = 366
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
+RH S AS +LD +I++KDI+ R SG GGQ V KT + + +TH PTGI
Sbjct: 211 KRHTSFASVQVSP-ELDDDINIEIEDKDIRIDTYRASGAGGQHVNKTESAIRITHFPTGI 269
Query: 65 VIKCHQSRSLSENRKTARELL 85
V++C RS +N+ TA ++L
Sbjct: 270 VVQCQNDRSQHKNKATAMKML 290
>sp|A0KT88|RF1_SHESA Peptide chain release factor 1 OS=Shewanella sp. (strain ANA-3)
GN=prfA PE=3 SV=1
Length = 363
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 16/120 (13%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
R H S A ++ +++ ++ I+ D++ R SG GGQ V KT++ + +THIPTGI
Sbjct: 197 RVHTS-AVTVVVMHEVPEAEAISINPADLKVDTFRSSGAGGQHVNKTDSAIRITHIPTGI 255
Query: 65 VIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKLDA 123
V++C RS +NR A +L A+I+ + DEKRR+ +E +R L A
Sbjct: 256 VVECQDQRSQHKNRAQAMSVLA--------------ARIQAVEDEKRRSAEESTRRSLVA 301
>sp|Q8EAR3|RF1_SHEON Peptide chain release factor 1 OS=Shewanella oneidensis (strain
MR-1) GN=prfA PE=3 SV=1
Length = 363
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 16/120 (13%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
R H S A ++ +++ ++ I+ D++ R SG GGQ V KT++ + +THIPTGI
Sbjct: 197 RVHTS-AVTVVVMHEVPEAEAISINPADLKVDTFRSSGAGGQHVNKTDSAIRITHIPTGI 255
Query: 65 VIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKLDA 123
V++C RS +NR A +L A+I+ + DEKRR+ +E +R L A
Sbjct: 256 VVECQDQRSQHKNRAQAMSVLA--------------ARIQAVEDEKRRSAEESTRRSLVA 301
>sp|Q04YD0|RF2_LEPBL Peptide chain release factor 2 OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain L550) GN=prfB PE=3 SV=1
Length = 367
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
RRH S S + ++D KI+EKDI+ R SG GGQ V T++ V +TH+P+GI
Sbjct: 214 RRHTSFVS-VHVSPEIDDEIDIKIEEKDIRVDVYRSSGAGGQHVNTTDSAVRITHLPSGI 272
Query: 65 VIKCHQSRSLSENRKTARELLVA 87
V+ C RS +NR TA ++L A
Sbjct: 273 VVACQNERSQIKNRDTAFKMLKA 295
>sp|Q04V47|RF2_LEPBJ Peptide chain release factor 2 OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain JB197) GN=prfB PE=3 SV=1
Length = 367
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
RRH S S + ++D KI+EKDI+ R SG GGQ V T++ V +TH+P+GI
Sbjct: 214 RRHTSFVS-VHVSPEIDDEIDIKIEEKDIRVDVYRSSGAGGQHVNTTDSAVRITHLPSGI 272
Query: 65 VIKCHQSRSLSENRKTARELLVA 87
V+ C RS +NR TA ++L A
Sbjct: 273 VVACQNERSQIKNRDTAFKMLKA 295
>sp|Q73X48|RF1_MYCPA Peptide chain release factor 1 OS=Mycobacterium paratuberculosis
(strain ATCC BAA-968 / K-10) GN=prfA PE=3 SV=1
Length = 357
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
R H S A L + ++V +IDE D++ R SG GGQ V T++ V +TH+PTG+
Sbjct: 196 RVHTSAAGVLVYPEPEEVAEV-QIDESDLRIDVFRSSGKGGQGVNTTDSAVRITHLPTGV 254
Query: 65 VIKCHQSRSLSENRKTARELLVAQWDV----QVNGEDSLN--AQIRRIDEKRR 111
V+ C RS +N+ A ++L A+ Q + E S + +QIR +D R
Sbjct: 255 VVTCQNERSQLQNKARALQVLAARLQAMAEEQASAEASADRASQIRTVDRSER 307
>sp|A1RNE1|RF1_SHESW Peptide chain release factor 1 OS=Shewanella sp. (strain W3-18-1)
GN=prfA PE=3 SV=1
Length = 363
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 16/120 (13%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
R H S A ++ +++ ++ I+ D++ R SG GGQ V KT++ + +THIPTGI
Sbjct: 197 RVHTS-AVTVVVMHEVPEAEAISINPADLKVDTFRSSGAGGQHVNKTDSAIRITHIPTGI 255
Query: 65 VIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKLDA 123
V++C RS +NR A +L A+I+ + DEKRR+ +E +R L A
Sbjct: 256 VVECQDQRSQHKNRAQAMSVLA--------------ARIQAVEDEKRRSAEESTRRSLVA 301
>sp|A4Y3J8|RF1_SHEPC Peptide chain release factor 1 OS=Shewanella putrefaciens (strain
CN-32 / ATCC BAA-453) GN=prfA PE=3 SV=1
Length = 363
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 16/120 (13%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
R H S A ++ +++ ++ I+ D++ R SG GGQ V KT++ + +THIPTGI
Sbjct: 197 RVHTS-AVTVVVMHEVPEAEAISINPADLKVDTFRSSGAGGQHVNKTDSAIRITHIPTGI 255
Query: 65 VIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKLDA 123
V++C RS +NR A +L A+I+ + DEKRR+ +E +R L A
Sbjct: 256 VVECQDQRSQHKNRAQAMSVLA--------------ARIQAVEDEKRRSAEESTRRSLVA 301
>sp|A0QCW7|RF1_MYCA1 Peptide chain release factor 1 OS=Mycobacterium avium (strain 104)
GN=prfA PE=3 SV=1
Length = 357
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
R H S A L + ++V +IDE D++ R SG GGQ V T++ V +TH+PTG+
Sbjct: 196 RVHTSAAGVLVYPEPEEVAEV-QIDESDLRIDVFRSSGKGGQGVNTTDSAVRITHLPTGV 254
Query: 65 VIKCHQSRSLSENRKTARELLVAQWDV----QVNGEDSLN--AQIRRIDEKRR 111
V+ C RS +N+ A ++L A+ Q + E S + +QIR +D R
Sbjct: 255 VVTCQNERSQLQNKARALQVLAARLQAMAEEQASAEASADRASQIRTVDRSER 307
>sp|A8FYZ0|RF1_SHESH Peptide chain release factor 1 OS=Shewanella sediminis (strain
HAW-EB3) GN=prfA PE=3 SV=1
Length = 361
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 15/100 (15%)
Query: 23 SKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTAR 82
S+ +I++ D++ R SG GGQ V KT++ + LTHIP+GIV++C RS +NR A
Sbjct: 214 SEAIEINKGDLKVDTFRASGAGGQHVNKTDSAIRLTHIPSGIVVECQDQRSQHKNRAQAM 273
Query: 83 ELLVAQWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKL 121
+L A+I+ + DEKRR+ +E +R L
Sbjct: 274 SVLT--------------ARIQAVEDEKRRSAEESTRRNL 299
>sp|B7J4M2|RF2_ACIF2 Peptide chain release factor 2 OS=Acidithiobacillus ferrooxidans
(strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=prfB PE=3
SV=1
Length = 365
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
RRH S AS +F ++D S I+ D++ R SG GGQ V KT++ + +TH+P+GI
Sbjct: 212 RRHTSFAS-VFVYPEIDDSFEVDINPADLKVDTYRASGAGGQHVNKTDSAIRITHVPSGI 270
Query: 65 VIKCHQSRSLSENRKTARELL 85
V+ C RS +NR A +L
Sbjct: 271 VVACQTDRSQHKNRAEAMRML 291
>sp|B1KDU3|RF1_SHEWM Peptide chain release factor 1 OS=Shewanella woodyi (strain ATCC
51908 / MS32) GN=prfA PE=3 SV=1
Length = 361
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 15/96 (15%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 86
+I++ D++ R SG GGQ V KT++ + +THIPTGIV++C RS +NR A +
Sbjct: 218 EINKADLKVDTFRASGAGGQHVNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSV-- 275
Query: 87 AQWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKL 121
L+A+I+ + DEKRR+ +E +R L
Sbjct: 276 ------------LSARIQAVEDEKRRSEEESTRRNL 299
>sp|B0TR27|RF1_SHEHH Peptide chain release factor 1 OS=Shewanella halifaxensis (strain
HAW-EB4) GN=prfA PE=3 SV=1
Length = 361
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 15/96 (15%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 86
+I++ D++ R SG GGQ V KT++ + +THIPTGIV++C RS +NR A +L
Sbjct: 218 EINKADLKVDTFRASGAGGQHVNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLA 277
Query: 87 AQWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKL 121
A+I+ + DEKRR+ +E +R L
Sbjct: 278 --------------ARIQAVEDEKRRSAEESTRRNL 299
>sp|A8H7A5|RF1_SHEPA Peptide chain release factor 1 OS=Shewanella pealeana (strain ATCC
700345 / ANG-SQ1) GN=prfA PE=3 SV=1
Length = 361
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 15/96 (15%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 86
+I++ D++ R SG GGQ V KT++ + +THIPTGIV++C RS +NR A +L
Sbjct: 218 EINKADLKVDTFRASGAGGQHVNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLA 277
Query: 87 AQWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKL 121
A+I+ + DEKRR+ +E +R L
Sbjct: 278 --------------ARIQAVEDEKRRSAEESTRRNL 299
>sp|Q8NR57|RF1_CORGL Peptide chain release factor 1 OS=Corynebacterium glutamicum
(strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 /
NCIMB 10025) GN=prfA PE=3 SV=1
Length = 358
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 86
+IDEKDI+ R SG GGQ V T++ V +TH+PTG+V+ C + RS +NR A ++L
Sbjct: 217 EIDEKDIRVDVYRSSGKGGQGVNTTDSAVRITHLPTGLVVTCQKERSQIQNRARAMQVLA 276
Query: 87 A 87
A
Sbjct: 277 A 277
>sp|A4QDG1|RF1_CORGB Peptide chain release factor 1 OS=Corynebacterium glutamicum
(strain R) GN=prfA PE=3 SV=1
Length = 358
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 86
+IDEKDI+ R SG GGQ V T++ V +TH+PTG+V+ C + RS +NR A ++L
Sbjct: 217 EIDEKDIRVDVYRSSGKGGQGVNTTDSAVRITHLPTGLVVTCQKERSQIQNRARAMQVLA 276
Query: 87 A 87
A
Sbjct: 277 A 277
>sp|A9L2D4|RF1_SHEB9 Peptide chain release factor 1 OS=Shewanella baltica (strain OS195)
GN=prfA PE=3 SV=1
Length = 363
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 16/120 (13%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
R H S A ++ +++ ++ I+ D++ R SG GGQ V KT++ + +THIPTGI
Sbjct: 197 RVHTS-AVTVVVLHEVPEAEAISINPADLKVDTFRSSGAGGQHVNKTDSAIRITHIPTGI 255
Query: 65 VIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKLDA 123
V++C RS +NR A +L A+I+ + DEKRR+ +E +R L A
Sbjct: 256 VVECQDQRSQHKNRAQAMSVLA--------------ARIQAVEDEKRRSAEESTRRSLVA 301
>sp|B1VV08|RF2_STRGG Peptide chain release factor 2 OS=Streptomyces griseus subsp.
griseus (strain JCM 4626 / NBRC 13350) GN=prfB PE=3 SV=1
Length = 368
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 86
+IDE +++ R SGPGGQ V T++ V LTH+PTGIV+ C RS +N+ +A +L
Sbjct: 232 EIDESELRVDVYRSSGPGGQGVNTTDSAVRLTHLPTGIVVSCQNERSQIQNKASAMNVLQ 291
Query: 87 AQ 88
A+
Sbjct: 292 AK 293
>sp|A6WSF0|RF1_SHEB8 Peptide chain release factor 1 OS=Shewanella baltica (strain OS185)
GN=prfA PE=3 SV=1
Length = 363
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 16/120 (13%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
R H S A ++ +++ ++ I+ D++ R SG GGQ V KT++ + +THIPTGI
Sbjct: 197 RVHTS-AVTVVVLHEVPEAEAISINPADLKVDTFRSSGAGGQHVNKTDSAIRITHIPTGI 255
Query: 65 VIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRI-DEKRRATQEQKKRKLDA 123
V++C RS +NR A +L A+I+ + DEKRR+ +E +R L A
Sbjct: 256 VVECQDQRSQHKNRAQAMSVLA--------------ARIQAVEDEKRRSAEESTRRSLVA 301
>sp|C0ZXD0|RF2_RHOE4 Peptide chain release factor 2 OS=Rhodococcus erythropolis (strain
PR4 / NBRC 100887) GN=prfB PE=3 SV=1
Length = 368
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 86
+I+E DI+ R SGPGGQ+V T++ V LTHIPTGIV+ C +S +N+ +A +L
Sbjct: 230 EINENDIRVDVYRSSGPGGQSVNTTDSAVRLTHIPTGIVVTCQNEKSQLQNKVSAMRVLQ 289
Query: 87 AQ 88
A+
Sbjct: 290 AK 291
>sp|B1LB88|RF2_THESQ Peptide chain release factor 2 OS=Thermotoga sp. (strain RQ2)
GN=prfB PE=3 SV=1
Length = 367
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 17/92 (18%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDE--------KDIQERFVRGSGPGGQAVAKTNNCVV 56
RRH S AS + +P+ID+ +D++ R SG GGQ V KT + V
Sbjct: 209 RRHTSFAS---------VNVIPEIDDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVR 259
Query: 57 LTHIPTGIVIKCHQSRSLSENRKTARELLVAQ 88
+TH+PTGIV+ C RS +N++TA ++L A+
Sbjct: 260 ITHLPTGIVVSCQNERSQHQNKQTALKILKAK 291
>sp|Q9X1R5|RF2_THEMA Peptide chain release factor 2 OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=prfB PE=3 SV=1
Length = 369
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 17/92 (18%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDE--------KDIQERFVRGSGPGGQAVAKTNNCVV 56
RRH S AS + +P+ID+ +D++ R SG GGQ V KT + V
Sbjct: 211 RRHTSFAS---------VNVIPEIDDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVR 261
Query: 57 LTHIPTGIVIKCHQSRSLSENRKTARELLVAQ 88
+TH+PTGIV+ C RS +N++TA ++L A+
Sbjct: 262 ITHLPTGIVVSCQNERSQHQNKQTALKILKAK 293
>sp|B4RQU4|RF2_NEIG2 Peptide chain release factor 2 OS=Neisseria gonorrhoeae (strain
NCCP11945) GN=prfB PE=3 SV=1
Length = 367
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 10/113 (8%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
+RH S AS +F ++D S +I+ D++ R SG GGQ + KT++ V +TH PTGI
Sbjct: 214 KRHTSFAS-VFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRITHEPTGI 272
Query: 65 VIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQK 117
V++C RS N+ A E+L ++ ++R+ +E+++A +E K
Sbjct: 273 VVQCQNDRSQHANKAAAMEMLKSKL---------YELEMRKRNEEKQALEEGK 316
>sp|Q5F5H5|RF2_NEIG1 Peptide chain release factor 2 OS=Neisseria gonorrhoeae (strain
ATCC 700825 / FA 1090) GN=prfB PE=3 SV=1
Length = 367
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 10/113 (8%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
+RH S AS +F ++D S +I+ D++ R SG GGQ + KT++ V +TH PTGI
Sbjct: 214 KRHTSFAS-VFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRITHEPTGI 272
Query: 65 VIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQK 117
V++C RS N+ A E+L ++ ++R+ +E+++A +E K
Sbjct: 273 VVQCQNDRSQHANKAAAMEMLKSKL---------YELEMRKRNEEKQALEEGK 316
>sp|Q9JXB3|RF2_NEIMB Peptide chain release factor 2 OS=Neisseria meningitidis serogroup
B (strain MC58) GN=prfB PE=3 SV=1
Length = 367
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 10/113 (8%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
+RH S AS +F ++D S +I+ D++ R SG GGQ + KT++ V +TH PTGI
Sbjct: 214 KRHTSFAS-VFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRITHEPTGI 272
Query: 65 VIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQK 117
V++C RS N+ A E+L ++ ++R+ +E+++A +E K
Sbjct: 273 VVQCQNDRSQHANKAAAMEMLKSKL---------YELEMRKRNEEKQALEEGK 316
>sp|A5IM04|RF2_THEP1 Peptide chain release factor 2 OS=Thermotoga petrophila (strain
RKU-1 / ATCC BAA-488 / DSM 13995) GN=prfB PE=3 SV=1
Length = 367
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 17/92 (18%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDE--------KDIQERFVRGSGPGGQAVAKTNNCVV 56
RRH S AS + +P+ID+ +D++ R SG GGQ V KT + V
Sbjct: 209 RRHTSFAS---------VNVIPEIDDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVR 259
Query: 57 LTHIPTGIVIKCHQSRSLSENRKTARELLVAQ 88
+TH+PTGIV+ C RS +N++TA ++L A+
Sbjct: 260 ITHLPTGIVVSCQNERSQHQNKQTALKILKAK 291
>sp|B2U8V1|RF2_RALPJ Peptide chain release factor 2 OS=Ralstonia pickettii (strain 12J)
GN=prfB PE=3 SV=1
Length = 367
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 6 RHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIV 65
RH S SS+F ++D S +++ D++ R SG GGQ + KT++ V +THIPTGIV
Sbjct: 215 RHTSF-SSIFVYPEVDDSIEIEVNPADLRVDTYRASGAGGQHINKTDSAVRITHIPTGIV 273
Query: 66 IKCHQSRSLSENRKTARELL 85
++C RS NR A +L
Sbjct: 274 VQCQNDRSQHRNRAEAMTML 293
>sp|A1KWK6|RF2_NEIMF Peptide chain release factor 2 OS=Neisseria meningitidis serogroup
C / serotype 2a (strain ATCC 700532 / FAM18) GN=prfB
PE=3 SV=1
Length = 367
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 10/113 (8%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
+RH S AS +F ++D S +I+ D++ R SG GGQ + KT++ V +TH PTGI
Sbjct: 214 KRHTSFAS-VFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRITHEPTGI 272
Query: 65 VIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQK 117
V++C RS N+ A E+L ++ ++R+ +E+++A +E K
Sbjct: 273 VVQCQNDRSQHANKAAAMEMLKSKL---------YELEMRKRNEEKQALEEGK 316
>sp|Q9JWV4|RF2_NEIMA Peptide chain release factor 2 OS=Neisseria meningitidis serogroup
A / serotype 4A (strain Z2491) GN=prfB PE=3 SV=1
Length = 367
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 10/113 (8%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
+RH S AS +F ++D S +I+ D++ R SG GGQ + KT++ V +TH PTGI
Sbjct: 214 KRHTSFAS-VFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRITHEPTGI 272
Query: 65 VIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQK 117
V++C RS N+ A E+L ++ ++R+ +E+++A +E K
Sbjct: 273 VVQCQNDRSQHANKAAAMEMLKSKL---------YELEMRKRNEEKQALEEGK 316
>sp|A8EWG5|RF2_ARCB4 Peptide chain release factor 2 OS=Arcobacter butzleri (strain
RM4018) GN=prfB PE=3 SV=1
Length = 365
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
+RH S +S + ++D + I++KDI+ R SG GGQ V KT + + +THIPTGI
Sbjct: 211 KRHTSFSSVMVSP-EIDDNINIVIEDKDIRIDTYRASGAGGQHVNKTESAIRITHIPTGI 269
Query: 65 VIKCHQSRSLSENRKTARELL 85
V++C RS +N+ +A ++L
Sbjct: 270 VVQCQNDRSQHKNKDSAFKML 290
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,987,909
Number of Sequences: 539616
Number of extensions: 1801752
Number of successful extensions: 9040
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 8025
Number of HSP's gapped (non-prelim): 1060
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)