Query psy4479
Match_columns 135
No_of_seqs 111 out of 1063
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 18:10:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4479.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4479hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rsm_A Probable peptide chain 100.0 2.7E-36 9.3E-41 220.9 9.0 91 7-98 23-113 (115)
2 4dh9_Y YAEJ; ribosome, YAEJ, r 100.0 1.4E-34 4.9E-39 218.0 7.3 104 20-123 2-137 (140)
3 1gqe_A Release factor 2, RF2; 100.0 4.5E-33 1.5E-37 236.4 10.8 89 4-93 211-299 (365)
4 2b3t_B RF-1, peptide chain rel 100.0 8.4E-33 2.9E-37 234.4 9.8 95 2-97 192-286 (360)
5 3d5a_X RF1, peptide chain rele 100.0 1.3E-32 4.6E-37 232.8 10.6 90 2-93 188-277 (354)
6 2ihr_1 Peptide chain release f 100.0 1.3E-32 4.5E-37 233.5 10.5 89 4-93 199-287 (365)
7 1rq0_A RF-1, peptide chain rel 100.0 8.1E-33 2.8E-37 233.2 9.0 90 2-93 169-258 (342)
8 1zbt_A RF-1, peptide chain rel 100.0 8.6E-33 2.9E-37 235.0 9.0 90 2-93 206-295 (371)
9 2jva_A Peptidyl-tRNA hydrolase 100.0 4.8E-30 1.6E-34 186.1 8.4 75 22-96 4-102 (108)
10 1j26_A Immature colon carcinom 100.0 5E-29 1.7E-33 181.8 10.4 75 22-96 11-110 (112)
11 2axy_A Poly(RC)-binding protei 65.8 2.8 9.5E-05 26.7 1.7 47 42-91 21-72 (73)
12 1vig_A Vigilin; RNA-binding pr 65.7 3.1 0.00011 26.4 1.9 42 42-88 21-69 (71)
13 2ctl_A Vigilin; K homology typ 62.7 4.8 0.00016 27.2 2.5 49 42-93 33-89 (97)
14 2ctm_A Vigilin; K homology typ 59.2 7.5 0.00026 26.1 3.0 49 42-95 33-89 (95)
15 2hh3_A KH-type splicing regula 56.4 7.8 0.00027 26.6 2.7 52 42-96 27-85 (106)
16 1x4n_A FAR upstream element bi 53.9 18 0.00061 23.8 4.2 53 42-97 31-90 (92)
17 2ctk_A Vigilin; K homology typ 53.5 11 0.00037 25.7 3.1 47 42-93 33-86 (104)
18 2ctf_A Vigilin; K homology typ 52.7 11 0.00036 25.8 2.9 49 42-93 43-94 (102)
19 2cte_A Vigilin; K homology typ 52.5 7.3 0.00025 25.9 2.0 49 42-95 33-88 (94)
20 2ctj_A Vigilin; K homology typ 49.0 8.1 0.00028 26.1 1.8 48 41-93 32-87 (95)
21 2p2r_A Poly(RC)-binding protei 45.0 12 0.0004 23.6 2.0 45 42-90 21-73 (76)
22 1x4m_A FAR upstream element bi 40.9 14 0.00049 24.4 2.0 47 42-93 31-88 (94)
23 2jvz_A KH type-splicing, FAR u 40.8 36 0.0012 23.8 4.3 49 42-93 107-162 (164)
24 1dtj_A RNA-binding neurooncolo 39.6 12 0.00041 23.4 1.4 46 42-90 19-74 (76)
25 1ec6_A RNA-binding protein NOV 38.9 21 0.00073 23.0 2.6 48 42-92 19-76 (87)
26 1we8_A Tudor and KH domain con 37.4 18 0.00063 24.3 2.2 46 42-92 31-87 (104)
27 2yqr_A KIAA0907 protein; struc 35.9 38 0.0013 23.8 3.7 47 42-92 35-100 (119)
28 2opv_A KHSRP protein; KH domai 35.0 17 0.00059 23.4 1.6 44 42-90 30-84 (85)
29 1j5k_A Heterogeneous nuclear r 34.2 29 0.001 22.5 2.7 49 42-93 30-85 (89)
30 2lfh_A DNA-binding protein inh 32.9 11 0.00039 24.6 0.4 26 66-91 17-42 (68)
31 3krm_A Insulin-like growth fac 32.3 19 0.00067 25.4 1.7 49 42-93 101-158 (163)
32 1k1g_A SF1-BO isoform; splicin 31.9 67 0.0023 22.8 4.5 50 41-94 28-102 (131)
33 1zzk_A Heterogeneous nuclear r 29.6 31 0.0011 22.0 2.2 49 42-93 23-78 (82)
34 2ftc_B Mitochondrial ribosomal 28.2 28 0.00096 25.3 2.0 27 36-63 80-106 (136)
35 1wvn_A Poly(RC)-binding protei 28.1 19 0.00065 23.0 0.9 48 42-92 22-76 (82)
36 3ajm_A Programmed cell death p 28.1 91 0.0031 24.5 5.0 52 78-131 127-178 (213)
37 4aya_A DNA-binding protein inh 27.5 20 0.00069 24.9 1.0 33 68-100 30-63 (97)
38 2jzx_A Poly(RC)-binding protei 27.5 34 0.0012 24.0 2.3 47 42-93 21-74 (160)
39 2ywq_A Protein Y, ribosomal su 24.0 1.6E+02 0.0054 19.3 6.0 40 53-92 54-94 (105)
40 3c01_A Surface presentation of 23.7 35 0.0012 20.7 1.5 13 121-133 3-15 (48)
41 2anr_A Neuro-oncological ventr 23.6 33 0.0011 24.6 1.6 46 42-92 22-79 (178)
42 2rrf_A Zinc finger FYVE domain 22.1 2E+02 0.0068 21.1 5.6 59 35-95 66-135 (141)
43 4hoy_A PTH, peptidyl-tRNA hydr 21.5 40 0.0014 25.7 1.8 22 24-47 95-116 (193)
44 3pa8_A Toxin B; CLAN CD cystei 21.5 49 0.0017 26.7 2.3 26 43-68 214-248 (254)
45 4fyj_A PTH, peptidyl-tRNA hydr 21.3 42 0.0014 25.8 1.8 22 24-47 101-122 (199)
No 1
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=100.00 E-value=2.7e-36 Score=220.92 Aligned_cols=91 Identities=45% Similarity=0.785 Sum_probs=87.9
Q ss_pred eecceeeeeeecCCCCCCCCCcCCCCeEEEEeeccCCCCcccCccCceEEEEEeCCeeEEEecCcCCHHHHHHHHHHHHH
Q psy4479 7 HLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 86 (135)
Q Consensus 7 ~ts~~~v~v~~~~l~~~~~~~i~~~dl~~~~~RsSGPGGQ~VNKt~s~V~l~h~ptgi~v~~~~~RSq~~Nk~~A~~rL~ 86 (135)
-||+|+|.|+ |+.+.+..+.|+++||+++|+|||||||||||||+|+|+|+|+||||+|.||++|||++||+.|+++|+
T Consensus 23 gts~~~v~v~-p~~d~~~~l~I~~~dl~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~~RSQ~~Nr~~A~~~L~ 101 (115)
T 2rsm_A 23 GMAASTVQVA-GRKDYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIARKVLQ 101 (115)
T ss_dssp CCCCCCCCCC-SCCCCCCSCCCCGGGCEEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECCSSCHHHHHHHHHHHHH
T ss_pred ccceEEEEec-cccCCCccCCcCHHHeEEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcCCCCHHHHHHHHHHHHH
Confidence 3899999999 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCC
Q psy4479 87 AQWDVQVNGEDS 98 (135)
Q Consensus 87 ~~L~~~~~~~ps 98 (135)
++|+++++++++
T Consensus 102 ~kL~e~~~~~~s 113 (115)
T 2rsm_A 102 EKVDVFYNSGPS 113 (115)
T ss_dssp HHHHHHHHSCCS
T ss_pred HHHHHHhccccC
Confidence 999999998776
No 2
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=100.00 E-value=1.4e-34 Score=218.04 Aligned_cols=104 Identities=27% Similarity=0.360 Sum_probs=93.2
Q ss_pred CCCCCCCCcCCCCeEEEEeeccCCCCcccCccCceEEEE------EeCC------------------eeEEEecCcCCHH
Q psy4479 20 LDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLT------HIPT------------------GIVIKCHQSRSLS 75 (135)
Q Consensus 20 l~~~~~~~i~~~dl~~~~~RsSGPGGQ~VNKt~s~V~l~------h~pt------------------gi~v~~~~~RSq~ 75 (135)
+.++..+.||++||+|+|+|||||||||||||+|+|+|+ |+|+ +|+|.||++|||+
T Consensus 2 ~~i~~~i~I~~~el~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~ 81 (140)
T 4dh9_Y 2 IVISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQE 81 (140)
T ss_dssp CCCCSSSCCCTTCSEEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHH
T ss_pred ccccCCCccChHHeEEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHH
Confidence 446778899999999999999999999999999999999 5897 5999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHH-HHHHhhhchHH
Q psy4479 76 ENRKTARELLVAQWDVQVNG-------EDSLNAQIRRIDEKRRA-TQEQKKRKLDA 123 (135)
Q Consensus 76 ~Nk~~A~~rL~~~L~~~~~~-------~ps~~~~~kRl~~kk~~-~~k~~r~k~~~ 123 (135)
+|+++|+++|.++|.+++.+ +|+++++++||+.|+++ ++|+.|+++.+
T Consensus 82 ~Nr~~A~~rL~~~l~~a~~~pk~R~~tkpt~~s~~rRl~~Kk~rs~~K~~R~k~~~ 137 (140)
T 4dh9_Y 82 LNREAALARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRGKVRS 137 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCCCCCCSSTTTHHHHHHHHHHHHHTSCCC----
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCcCCCCcHHHHHHHHHHHHHHhHHhhccCCCCC
Confidence 99999999999999999976 47999999999999998 88999987653
No 3
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=100.00 E-value=4.5e-33 Score=236.44 Aligned_cols=89 Identities=35% Similarity=0.491 Sum_probs=84.1
Q ss_pred eeEeecceeeeeeecCCCCCCCCCcCCCCeEEEEeeccCCCCcccCccCceEEEEEeCCeeEEEecCcCCHHHHHHHHHH
Q psy4479 4 FRRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARE 83 (135)
Q Consensus 4 ~r~~ts~~~v~v~~~~l~~~~~~~i~~~dl~~~~~RsSGPGGQ~VNKt~s~V~l~h~ptgi~v~~~~~RSq~~Nk~~A~~ 83 (135)
=|+|||||+|+|+ |.++....+.|+++||+++|+|||||||||||||+|+|+|+|+||||+|+||++|||++||+.|++
T Consensus 211 gRrhTS~asV~V~-Pe~~~~v~i~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~HiPtgivv~~q~~RSQ~~Nr~~A~~ 289 (365)
T 1gqe_A 211 GRRHTSFSSAFVY-PEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMK 289 (365)
T ss_dssp CCEEEEEEEEEEE-ECCBTTBCCCCCGGGEEEEEECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHH
T ss_pred CCCCcceeEEEEe-cCCCcccccccCHHHceEeeecCCCCCCCcccCccceEEEEECCCeEEEEECCCCCHHHHHHHHHH
Confidence 3899999999999 577666678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q psy4479 84 LLVAQWDVQV 93 (135)
Q Consensus 84 rL~~~L~~~~ 93 (135)
+|+++|.+..
T Consensus 290 ~L~~~L~~~~ 299 (365)
T 1gqe_A 290 QMKAKLYEVE 299 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 4
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=99.98 E-value=8.4e-33 Score=234.41 Aligned_cols=95 Identities=31% Similarity=0.468 Sum_probs=86.8
Q ss_pred ceeeEeecceeeeeeecCCCCCCCCCcCCCCeEEEEeeccCCCCcccCccCceEEEEEeCCeeEEEecCcCCHHHHHHHH
Q psy4479 2 SIFRRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA 81 (135)
Q Consensus 2 ~~~r~~ts~~~v~v~~~~l~~~~~~~i~~~dl~~~~~RsSGPGGQ~VNKt~s~V~l~h~ptgi~v~~~~~RSq~~Nk~~A 81 (135)
|-.|+|||||+|+|+ |.++....+.|+++||+++|+|||||||||||||+|+|+|+|+||||+|+||++|||++||+.|
T Consensus 192 s~gR~hTS~asV~V~-Pe~~~~e~i~i~~~dl~i~~~RssG~GGQ~VNkt~saVrl~hlPtGivv~~q~~RSQ~~Nr~~A 270 (360)
T 2b3t_B 192 SQGRIHTSACTVAVM-PELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKA 270 (360)
T ss_dssp SSCCCEEEEEEEECC-BCCCTTTCCCCCSSSEEEEECCSSCCCTTTCCCSSEEEEEEETTTCCEEEEEESSCHHHHHHHH
T ss_pred ccCcCCccceEEEEe-cCcccccccccChhheEEeeecCCCCCCCccccccceEEEEECCCeEEEEECCCCCHHHHHHHH
Confidence 346999999999999 5666543378999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCC
Q psy4479 82 RELLVAQWDVQVNGED 97 (135)
Q Consensus 82 ~~rL~~~L~~~~~~~p 97 (135)
+++|.++|..+...+.
T Consensus 271 ~~~L~~~L~~~~~~~~ 286 (360)
T 2b3t_B 271 LSVLGARIHAAEMAKR 286 (360)
T ss_dssp HHHHHHHHTTTTTTSC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999886643
No 5
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=99.98 E-value=1.3e-32 Score=232.75 Aligned_cols=90 Identities=31% Similarity=0.423 Sum_probs=84.0
Q ss_pred ceeeEeecceeeeeeecCCCCCCCCCcCCCCeEEEEeeccCCCCcccCccCceEEEEEeCCeeEEEecCcCCHHHHHHHH
Q psy4479 2 SIFRRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA 81 (135)
Q Consensus 2 ~~~r~~ts~~~v~v~~~~l~~~~~~~i~~~dl~~~~~RsSGPGGQ~VNKt~s~V~l~h~ptgi~v~~~~~RSq~~Nk~~A 81 (135)
|-.|+|||||+|+|+ |.++. ..+.|+++||+++|+|||||||||||||+|+|+|+|+||||+|+||++|||++||+.|
T Consensus 188 s~gR~hTS~asV~V~-P~~~~-~~i~i~~~dl~i~~~RssG~GGQ~VNkt~SaVrl~HlPtgivv~~q~~RSQ~~Nr~~A 265 (354)
T 3d5a_X 188 TQGRIHTSTATVAVL-PKAEE-EDFALNMDEIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVTCQDSRSQIKNREKA 265 (354)
T ss_dssp SSCCCEEEEEEEEEE-ECCCC-CCCCCCGGGEEEEEECCCSCCHHHHHHCCCEEEEEETTTTEEEEECCSSCHHHHHHHH
T ss_pred CCCcCccCceEEEEe-ccCcc-cccccCccceEEEeecCCCCCCcccccccceEEEEEcCCeEEEEECCCCCHHHHHHHH
Confidence 346999999999999 56655 4689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy4479 82 RELLVAQWDVQV 93 (135)
Q Consensus 82 ~~rL~~~L~~~~ 93 (135)
+++|+++|.++.
T Consensus 266 ~~~L~~~L~~~~ 277 (354)
T 3d5a_X 266 LMILRSRLLEMK 277 (354)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999876
No 6
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=99.98 E-value=1.3e-32 Score=233.54 Aligned_cols=89 Identities=31% Similarity=0.473 Sum_probs=84.2
Q ss_pred eeEeecceeeeeeecCCCCCCCCCcCCCCeEEEEeeccCCCCcccCccCceEEEEEeCCeeEEEecCcCCHHHHHHHHHH
Q psy4479 4 FRRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARE 83 (135)
Q Consensus 4 ~r~~ts~~~v~v~~~~l~~~~~~~i~~~dl~~~~~RsSGPGGQ~VNKt~s~V~l~h~ptgi~v~~~~~RSq~~Nk~~A~~ 83 (135)
=|+|||||+|+|+ |.++....+.|+++||+++|+|||||||||||||+|+|+|+|+||||+|+||++|||++||+.|++
T Consensus 199 gRrhTS~asV~V~-P~~~~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~saVrl~h~Ptgivv~~q~~RSQ~~Nr~~A~~ 277 (365)
T 2ihr_1 199 GRRHTSFAGVEVI-PEVDEEVEVVLKPEELRIDVMRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALK 277 (365)
T ss_dssp CCEEEEEEEEEEE-EECCSSSSCCCCGGGEEEEEECCCCSSCCSGGGSCSEEEEEETTTTEEEEECSSSCHHHHHHHHHH
T ss_pred CCccceeEEEEEe-cCCCcccccccCccceEEEEeecCCCCCceecccceEEEEEEcCCeEEEEECCCCCHHHHHHHHHH
Confidence 3899999999999 577766778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q psy4479 84 LLVAQWDVQV 93 (135)
Q Consensus 84 rL~~~L~~~~ 93 (135)
+|+++|.+..
T Consensus 278 ~L~~~L~~~~ 287 (365)
T 2ihr_1 278 ILKARLYELE 287 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 7
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=99.98 E-value=8.1e-33 Score=233.17 Aligned_cols=90 Identities=37% Similarity=0.450 Sum_probs=79.8
Q ss_pred ceeeEeecceeeeeeecCCCCCCCCCcCCCCeEEEEeeccCCCCcccCccCceEEEEEeCCeeEEEecCcCCHHHHHHHH
Q psy4479 2 SIFRRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA 81 (135)
Q Consensus 2 ~~~r~~ts~~~v~v~~~~l~~~~~~~i~~~dl~~~~~RsSGPGGQ~VNKt~s~V~l~h~ptgi~v~~~~~RSq~~Nk~~A 81 (135)
|-.|+|||||+|+|+ |.++. ..+.|+++||+++|+|||||||||||||+|+|+|+|+||||+|+||++|||++||+.|
T Consensus 169 s~gR~hTS~asV~V~-Pe~~~-~~i~i~~~dl~i~~~RssGpGGQ~VNKt~SaVrl~hlPtGivv~~q~~RSQ~~Nr~~A 246 (342)
T 1rq0_A 169 SGGRIHTSTATVAVL-PEIEE-KDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTA 246 (342)
T ss_dssp CSCCCEEEEEEEEEE-ECCCG-GGSCCCGGGEEEEEECCCC----CCSSSSEEEEEEETTTCCEEEEEESSCHHHHHHHH
T ss_pred cCCCCcccceEEEEe-ccccc-cccccChhHeEEEeecCCCCCCcccccccceEEEEECCCeEEEEECCCCCHHHHHHHH
Confidence 346999999999999 56655 4588999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy4479 82 RELLVAQWDVQV 93 (135)
Q Consensus 82 ~~rL~~~L~~~~ 93 (135)
+++|.++|..+.
T Consensus 247 ~~~L~~~L~~~~ 258 (342)
T 1rq0_A 247 LRILRARLYQLQ 258 (342)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999876
No 8
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=99.97 E-value=8.6e-33 Score=235.04 Aligned_cols=90 Identities=30% Similarity=0.398 Sum_probs=74.9
Q ss_pred ceeeEeecceeeeeeecCCCCCCCCCcCCCCeEEEEeeccCCCCcccCccCceEEEEEeCCeeEEEecCcCCHHHHHHHH
Q psy4479 2 SIFRRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTA 81 (135)
Q Consensus 2 ~~~r~~ts~~~v~v~~~~l~~~~~~~i~~~dl~~~~~RsSGPGGQ~VNKt~s~V~l~h~ptgi~v~~~~~RSq~~Nk~~A 81 (135)
|-.|+|||||+|+|+ |.++. ..+.|+++||+++|+|||||||||||||+|+|+|+|+||||+|+||++|||++||+.|
T Consensus 206 s~gR~hTS~asV~V~-Pe~~e-v~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVrlthlPtGivV~~q~eRSQ~~Nr~~A 283 (371)
T 1zbt_A 206 SQGRVHTSTATVLVM-PEVEE-VEYEIDPKDLRVDIYHASGAGGQNVNKVATAVRIIHLPTNIKVEMQEERTQQKNRDKA 283 (371)
T ss_dssp SSCCCEEEEEEEEEE-ECCCG-GGSCCCGGGEEEEEECC---------CCCCEEEEEETTTTEEEEECSSSSHHHHHHHH
T ss_pred CCCcccccceEEEEe-ccccc-cccccCcCcEEEEEecCCCCCCCcccccceeEEEEECCCeEEEEECCcCCHHHHHHHH
Confidence 346999999999999 56655 4588999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy4479 82 RELLVAQWDVQV 93 (135)
Q Consensus 82 ~~rL~~~L~~~~ 93 (135)
+++|.++|.++.
T Consensus 284 ~~~L~~~L~~~~ 295 (371)
T 1zbt_A 284 MKIIRARVADHF 295 (371)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 9
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.96 E-value=4.8e-30 Score=186.12 Aligned_cols=75 Identities=29% Similarity=0.385 Sum_probs=70.8
Q ss_pred CCCCCCcCCCCeEEEEeeccCCCCcccCccCceEEEEE------eC-----------------Ce-eEEEecCcCCHHHH
Q psy4479 22 YSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTH------IP-----------------TG-IVIKCHQSRSLSEN 77 (135)
Q Consensus 22 ~~~~~~i~~~dl~~~~~RsSGPGGQ~VNKt~s~V~l~h------~p-----------------tg-i~v~~~~~RSq~~N 77 (135)
++..+.||++||+++|+|||||||||||||+|+|+|+| +| +| |+|+||++|||.+|
T Consensus 4 i~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~N 83 (108)
T 2jva_A 4 ISNNVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQN 83 (108)
T ss_dssp CSSSCEECGGGEEEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHH
T ss_pred cccccccChHHEEEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHHH
Confidence 55678999999999999999999999999999999999 88 88 99999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q psy4479 78 RKTARELLVAQWDVQVNGE 96 (135)
Q Consensus 78 k~~A~~rL~~~L~~~~~~~ 96 (135)
+++|+++|.++|.+++.++
T Consensus 84 r~~Al~rL~~~l~~a~~~~ 102 (108)
T 2jva_A 84 RADALLRLSELIVNAAKLE 102 (108)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHccCc
Confidence 9999999999999998764
No 10
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.96 E-value=5e-29 Score=181.77 Aligned_cols=75 Identities=21% Similarity=0.269 Sum_probs=69.7
Q ss_pred CCCCCCcCCCCeEEEEeeccCCCCcccCccCceEEEE-EeCCe------------------------eEEEecCcCCHHH
Q psy4479 22 YSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLT-HIPTG------------------------IVIKCHQSRSLSE 76 (135)
Q Consensus 22 ~~~~~~i~~~dl~~~~~RsSGPGGQ~VNKt~s~V~l~-h~ptg------------------------i~v~~~~~RSq~~ 76 (135)
....+.||++||+++|+|||||||||||||+|+|+|+ |+|++ |+|+||++|||++
T Consensus 11 ~~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~ 90 (112)
T 1j26_A 11 KQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFR 90 (112)
T ss_dssp CSSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHH
T ss_pred cceEEecChHHeEEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHH
Confidence 3446689999999999999999999999999999998 99997 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q psy4479 77 NRKTARELLVAQWDVQVNGE 96 (135)
Q Consensus 77 Nk~~A~~rL~~~L~~~~~~~ 96 (135)
|+++|+++|.++|.+++.++
T Consensus 91 Nr~~Al~rL~~~l~~a~~~p 110 (112)
T 1j26_A 91 NLAECLQKIRDMIAEASGPS 110 (112)
T ss_dssp HHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999987653
No 11
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=65.76 E-value=2.8 Score=26.69 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=32.4
Q ss_pred CCCCcccCc--cCceEEEEEeCCee---EEEecCcCCHHHHHHHHHHHHHHHHHH
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPTGI---VIKCHQSRSLSENRKTARELLVAQWDV 91 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~ptgi---~v~~~~~RSq~~Nk~~A~~rL~~~L~~ 91 (135)
|+||.+++. ..|.+++...+.|. +|....+ ..+-..|...+.++|.+
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~---~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 21 GKKGESVKKMREESGARINISEGNCPERIITLAGP---TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC---HHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC---HHHHHHHHHHHHHHHhc
Confidence 999999995 57788887777651 2333332 45777888888887753
No 12
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=65.72 E-value=3.1 Score=26.40 Aligned_cols=42 Identities=19% Similarity=0.289 Sum_probs=29.7
Q ss_pred CCCCcccCc--cCceEEEEEeCCe-----eEEEecCcCCHHHHHHHHHHHHHHH
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPTG-----IVIKCHQSRSLSENRKTARELLVAQ 88 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~ptg-----i~v~~~~~RSq~~Nk~~A~~rL~~~ 88 (135)
||||.++|+ -+|.|.+.+.+.| ++|... . .+-+.|.+.+..+
T Consensus 21 G~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~---~--~~v~~A~~~I~~i 69 (71)
T 1vig_A 21 GKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGD---P--QGVQQAKRELLEL 69 (71)
T ss_dssp CSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEES---S--HHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcC---H--HHHHHHHHHHHHH
Confidence 999999995 6788998887776 334332 2 4677777777654
No 13
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=62.70 E-value=4.8 Score=27.17 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=34.4
Q ss_pred CCCCcccCc--cCceEEEEEeCCe------eEEEecCcCCHHHHHHHHHHHHHHHHHHhh
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPTG------IVIKCHQSRSLSENRKTARELLVAQWDVQV 93 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~ptg------i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~ 93 (135)
||||.++|+ ..|.|+|.+.+.| -.|..... ..|-+.|...+..++.++.
T Consensus 33 GkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~---~e~v~~A~~~I~~iv~e~e 89 (97)
T 2ctl_A 33 GRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY---EKNTEAARDAILRIVGELE 89 (97)
T ss_dssp CSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC---HHHHHHHHHHHHHHHHHHH
Confidence 999999995 4678888876655 12333332 3577889988888877654
No 14
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=59.18 E-value=7.5 Score=26.11 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=36.1
Q ss_pred CCCCcccCc--cCceEEEEEeCCe------eEEEecCcCCHHHHHHHHHHHHHHHHHHhhcC
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPTG------IVIKCHQSRSLSENRKTARELLVAQWDVQVNG 95 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~ptg------i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~~ 95 (135)
||||.+++. -.|.|.|.+.+.| ++|. .. ..|-+.|.+.|..++.+....
T Consensus 33 G~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~--G~---~e~v~~A~~~I~~i~~e~~~~ 89 (95)
T 2ctm_A 33 GARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVT--GL---PENVEEAIDHILNLEEEYLAD 89 (95)
T ss_dssp CSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEE--SC---HHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEE--cC---HHHHHHHHHHHHHHHHHHHHH
Confidence 999999995 5677888776665 3333 22 378899999999988877653
No 15
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=56.44 E-value=7.8 Score=26.64 Aligned_cols=52 Identities=12% Similarity=0.182 Sum_probs=34.1
Q ss_pred CCCCcccCc--cCceEEEEEeCCe-----eEEEecCcCCHHHHHHHHHHHHHHHHHHhhcCC
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPTG-----IVIKCHQSRSLSENRKTARELLVAQWDVQVNGE 96 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~ptg-----i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~~~ 96 (135)
|+||.+++. ..|.|+|...+.+ -+|...-+ ..+-+.|.+.+.+++.+....+
T Consensus 27 GkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~---~e~v~~A~~~I~~ii~~~~~g~ 85 (106)
T 2hh3_A 27 GRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP---PDRCEHAARIINDLLQSLRSGP 85 (106)
T ss_dssp TTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESS---HHHHHHHHHHHHHHHHHHC---
T ss_pred CCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeC---HHHHHHHHHHHHHHHhccccCC
Confidence 899999995 4566776665432 13333333 5678889999999998877653
No 16
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=53.90 E-value=18 Score=23.78 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=33.9
Q ss_pred CCCCcccCc--cCceEEEEEeCC--e---eEEEecCcCCHHHHHHHHHHHHHHHHHHhhcCCC
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPT--G---IVIKCHQSRSLSENRKTARELLVAQWDVQVNGED 97 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~pt--g---i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~~~p 97 (135)
|+||.+++. ..|.|+|...+. | -.|....+ ..+-+.|...+.+.|.+....++
T Consensus 31 GkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~---~e~v~~A~~~I~~~i~~~~~~p~ 90 (92)
T 1x4n_A 31 GRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT---PESVQSAKRLLDQIVEKGRSGPS 90 (92)
T ss_dssp CSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEEC---HHHHHHHHHHHHHHHHHTTCCSS
T ss_pred CCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeC---HHHHHHHHHHHHHHHHhcccCCC
Confidence 888888884 456666666543 1 22333332 46778899999998887665444
No 17
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=53.51 E-value=11 Score=25.68 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=34.2
Q ss_pred CCCCcccCc--cCceEEEEEeCCe-----eEEEecCcCCHHHHHHHHHHHHHHHHHHhh
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPTG-----IVIKCHQSRSLSENRKTARELLVAQWDVQV 93 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~ptg-----i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~ 93 (135)
||||-++++ ..|.|.|...+.| ++|... . .|-+.|.+.+..++.+..
T Consensus 33 G~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~----~-e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 33 GQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL----A-ANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp CSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC----H-HHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC----H-HHHHHHHHHHHHHHhhHH
Confidence 999999995 5788888776665 444432 2 678889888888876543
No 18
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=52.72 E-value=11 Score=25.76 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=31.3
Q ss_pred CCCCcccCccC---ceEEEEEeCCeeEEEecCcCCHHHHHHHHHHHHHHHHHHhh
Q psy4479 42 GPGGQAVAKTN---NCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQV 93 (135)
Q Consensus 42 GPGGQ~VNKt~---s~V~l~h~ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~ 93 (135)
|+||+++++.- +.|.|.|....=.|+.... ...-+.|...|..++.+..
T Consensus 43 G~~G~~Ik~i~~~~~~v~I~fp~~~~~ItI~G~---~~~V~~a~~~I~~~v~el~ 94 (102)
T 2ctf_A 43 GKKGQNLAKITQQMPKVHIEFTEGEDKITLEGP---TEDVSVAQEQIEGMVKDLI 94 (102)
T ss_dssp TTTTCHHHHHHHHCSSSEEEECSSSCEEEEEEC---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHcCCcEEEeCCCCCEEEEECC---HHHHHHHHHHHHHHHHHHH
Confidence 99999999632 4688765433323444443 5567777777777776554
No 19
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=52.53 E-value=7.3 Score=25.92 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=34.0
Q ss_pred CCCCcccCc--cCceEEEEEeC----Ce-eEEEecCcCCHHHHHHHHHHHHHHHHHHhhcC
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIP----TG-IVIKCHQSRSLSENRKTARELLVAQWDVQVNG 95 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~p----tg-i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~~ 95 (135)
||||.++++ ..|.|.|.+.+ +| ++|.. . ..+-+.|.+.+..++.+....
T Consensus 33 G~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G--~---~e~v~~A~~~I~~i~~~~~~~ 88 (94)
T 2cte_A 33 GKNGEKLQDLELKTATKIQIPRPDDPSNQIKITG--T---KEGIEKARHEVLLISAEQDKR 88 (94)
T ss_dssp CSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEE--C---HHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEE--C---HHHHHHHHHHHHHHhhccccc
Confidence 999999995 35666666643 34 33332 2 577888999999988776543
No 20
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=49.04 E-value=8.1 Score=26.06 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=33.2
Q ss_pred cCCCCcccCc--cCc-eEEEEEeCCe-----eEEEecCcCCHHHHHHHHHHHHHHHHHHhh
Q psy4479 41 SGPGGQAVAK--TNN-CVVLTHIPTG-----IVIKCHQSRSLSENRKTARELLVAQWDVQV 93 (135)
Q Consensus 41 SGPGGQ~VNK--t~s-~V~l~h~ptg-----i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~ 93 (135)
=||||..+|. -.+ .|.|.+...| ++|.... .+-+.|.+++..++.+..
T Consensus 32 IG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~-----~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 32 IGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPS-----SDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp HCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCH-----HHHHHHHHHHHHHHHHHS
T ss_pred CCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCH-----HHHHHHHHHHHHHHhhhh
Confidence 3999999996 355 6887776666 4444322 277888888888877643
No 21
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=44.95 E-value=12 Score=23.64 Aligned_cols=45 Identities=11% Similarity=0.114 Sum_probs=28.6
Q ss_pred CCCCcccCc--cCceEEEEEeC------CeeEEEecCcCCHHHHHHHHHHHHHHHHH
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIP------TGIVIKCHQSRSLSENRKTARELLVAQWD 90 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~p------tgi~v~~~~~RSq~~Nk~~A~~rL~~~L~ 90 (135)
|+||.+++. -.|.++|...+ .+ .|....+ ..+-..|...+.+.|.
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~-~v~I~G~---~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 21 GRQGAKINEIRQMSGAQIKIANPVEGSTDR-QVTITGS---AASISLAQYLINVRLS 73 (76)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCCCTTCSEE-EEEEEEC---HHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHCCEEEEcCCCCCCCeE-EEEEEeC---HHHHHHHHHHHHHHHH
Confidence 899999984 55667766644 23 2333332 4566778888777764
No 22
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=40.87 E-value=14 Score=24.38 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=29.7
Q ss_pred CCCCcccCc--cCceEEEEEeCCe---------eEEEecCcCCHHHHHHHHHHHHHHHHHHhh
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPTG---------IVIKCHQSRSLSENRKTARELLVAQWDVQV 93 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~ptg---------i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~ 93 (135)
|+||.+++. -.|.|+|.....+ ++|.. +.. +-+.|.+.+.++|.+..
T Consensus 31 GkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G--~~~---~v~~A~~~I~~~i~~~~ 88 (94)
T 1x4m_A 31 GKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG--DPY---KVQQAKEMVLELIRDQG 88 (94)
T ss_dssp CSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEE--CTT---THHHHHHHHHHHHCCCS
T ss_pred CCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEe--CHH---HHHHHHHHHHHHHhccC
Confidence 888998883 4566666654332 55554 222 55778888888776544
No 23
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=40.77 E-value=36 Score=23.81 Aligned_cols=49 Identities=8% Similarity=0.128 Sum_probs=33.4
Q ss_pred CCCCcccC--ccCceEEEEEeCC-----eeEEEecCcCCHHHHHHHHHHHHHHHHHHhh
Q psy4479 42 GPGGQAVA--KTNNCVVLTHIPT-----GIVIKCHQSRSLSENRKTARELLVAQWDVQV 93 (135)
Q Consensus 42 GPGGQ~VN--Kt~s~V~l~h~pt-----gi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~ 93 (135)
|+||.+++ ...|.|+|...+. .=.|....+ ..+-+.|...+.++|....
T Consensus 107 Gk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~---~~~v~~A~~~I~~~i~~~~ 162 (164)
T 2jvz_A 107 GRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP---PDRCEHAARIINDLLQSLR 162 (164)
T ss_dssp CSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESC---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcC---HHHHHHHHHHHHHHHhhhh
Confidence 99999998 3567777776542 223344443 4578889998888887653
No 24
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=39.61 E-value=12 Score=23.41 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=28.3
Q ss_pred CCCCcccCc--cCceEEEEEeCC-----e---eEEEecCcCCHHHHHHHHHHHHHHHHH
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPT-----G---IVIKCHQSRSLSENRKTARELLVAQWD 90 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~pt-----g---i~v~~~~~RSq~~Nk~~A~~rL~~~L~ 90 (135)
|+||.+++. -.|.|+|...+. | -.|....+ ..+-..|...+.+.|.
T Consensus 19 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~---~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 19 GKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS---PAATQAAQYLISQRVT 74 (76)
T ss_dssp CSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEES---HHHHHHHHHHHHHHCC
T ss_pred CCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeC---HHHHHHHHHHHHHHHh
Confidence 999999984 556666666542 1 23333333 4567778777776653
No 25
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=38.90 E-value=21 Score=22.98 Aligned_cols=48 Identities=15% Similarity=0.208 Sum_probs=31.4
Q ss_pred CCCCcccCc--cCceEEEEEeCC-----e---eEEEecCcCCHHHHHHHHHHHHHHHHHHh
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPT-----G---IVIKCHQSRSLSENRKTARELLVAQWDVQ 92 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~pt-----g---i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~ 92 (135)
|+||.+++. ..|.|.|...+. | -.|....+ ..+-..|...+.+.|.+.
T Consensus 19 GkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~---~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 19 GKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS---PAATQAAQYLISQRVTYE 76 (87)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS---HHHHHHHHHHHHHHHHHH
T ss_pred CCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC---HHHHHHHHHHHHHHHhcc
Confidence 899999984 556666665432 1 34444443 457788888888887653
No 26
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=37.42 E-value=18 Score=24.25 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=29.8
Q ss_pred CCCCcccCc--cCceEEEEEeC--------Ce-eEEEecCcCCHHHHHHHHHHHHHHHHHHh
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIP--------TG-IVIKCHQSRSLSENRKTARELLVAQWDVQ 92 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~p--------tg-i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~ 92 (135)
|+||.+++. -.|.|.|...+ .+ ++|..... +-+.|.+.+.+++.+.
T Consensus 31 GkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~-----~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 31 GRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQK-----EVAAAKHLILEKVSED 87 (104)
T ss_dssp TTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHH-----HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHH-----HHHHHHHHHHHHHhhC
Confidence 999999994 55666666543 33 44444322 5678888888887653
No 27
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.89 E-value=38 Score=23.81 Aligned_cols=47 Identities=26% Similarity=0.266 Sum_probs=27.7
Q ss_pred CCCCcccCc----cCceEEEEE---------------eCCeeEEEecCcCCHHHHHHHHHHHHHHHHHHh
Q psy4479 42 GPGGQAVAK----TNNCVVLTH---------------IPTGIVIKCHQSRSLSENRKTARELLVAQWDVQ 92 (135)
Q Consensus 42 GPGGQ~VNK----t~s~V~l~h---------------~ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~ 92 (135)
||||.+++. |..+|.|.= .|--+.|.+.+. .+-+.|.+.+..+|...
T Consensus 35 GpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~----e~i~~A~~~Ie~Ll~~v 100 (119)
T 2yqr_A 35 GPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKP----EGLAAAKKLCENLLQTV 100 (119)
T ss_dssp CGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSH----HHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCH----HHHHHHHHHHHHHhhch
Confidence 999999975 455555541 111256666542 45566777777666543
No 28
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=35.05 E-value=17 Score=23.42 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=26.7
Q ss_pred CCCCcccCc--cCceEEEEEeCCe---------eEEEecCcCCHHHHHHHHHHHHHHHHH
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPTG---------IVIKCHQSRSLSENRKTARELLVAQWD 90 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~ptg---------i~v~~~~~RSq~~Nk~~A~~rL~~~L~ 90 (135)
|+||.+++. -.|.|.|.....| ++|.. ++ .+-+.|.+.+.+++.
T Consensus 30 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G----~~-~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 30 GKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG----DP-YKVQQACEMVMDILR 84 (85)
T ss_dssp TTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEE----CH-HHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEe----CH-HHHHHHHHHHHHHhc
Confidence 888888873 4566666655444 44443 22 355667777766653
No 29
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=34.22 E-value=29 Score=22.49 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=30.6
Q ss_pred CCCCcccCc--cCceEEEEEeCC-----eeEEEecCcCCHHHHHHHHHHHHHHHHHHhh
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPT-----GIVIKCHQSRSLSENRKTARELLVAQWDVQV 93 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~pt-----gi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~ 93 (135)
|+||.+++. ..|.|+|...+. .=.|....+ ..+-+.|...+.+.+.+..
T Consensus 30 GkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~---~e~v~~A~~~I~~~i~e~~ 85 (89)
T 1j5k_A 30 GKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT---QDQIQNAQYLLQNSVKQYS 85 (89)
T ss_dssp CGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEE---HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcC---HHHHHHHHHHHHHHHHhhh
Confidence 888998884 455666555431 122223332 4677889999988887653
No 30
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=32.90 E-value=11 Score=24.60 Aligned_cols=26 Identities=12% Similarity=-0.047 Sum_probs=21.7
Q ss_pred EEecCcCCHHHHHHHHHHHHHHHHHH
Q psy4479 66 IKCHQSRSLSENRKTARELLVAQWDV 91 (135)
Q Consensus 66 v~~~~~RSq~~Nk~~A~~rL~~~L~~ 91 (135)
--++.+|.+..+-+.||+.|+..|=.
T Consensus 17 ~a~erER~Rm~~lN~aF~~LR~~VP~ 42 (68)
T 2lfh_A 17 PAAEEPLSLLDDMNHCYSRLRELVPG 42 (68)
T ss_dssp CCBCCCSCSSSHHHHHHHHHHHHCCC
T ss_pred CccHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34578899999999999999988644
No 31
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=32.33 E-value=19 Score=25.39 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=33.2
Q ss_pred CCCCcccCc--cCceEEEEEeCCee-------EEEecCcCCHHHHHHHHHHHHHHHHHHhh
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPTGI-------VIKCHQSRSLSENRKTARELLVAQWDVQV 93 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~ptgi-------~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~ 93 (135)
|+||.+++. ..|.|.+.....+. .|....+ ..+-+.|...+.+.|.++-
T Consensus 101 GkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~---~~~v~~A~~~I~~~i~~~~ 158 (163)
T 3krm_A 101 GKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGH---FYASQMAQRKIRDILAQVK 158 (163)
T ss_dssp CGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEEC---HHHHHHHHHHHHHHHHHHT
T ss_pred cCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeC---HHHHHHHHHHHHHHHHHHH
Confidence 899999995 45788887654441 3333333 3567788888888887654
No 32
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=31.88 E-value=67 Score=22.77 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=30.1
Q ss_pred cCCCCcccCc----cCceEEEEEe---------------------CCeeEEEecCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy4479 41 SGPGGQAVAK----TNNCVVLTHI---------------------PTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN 94 (135)
Q Consensus 41 SGPGGQ~VNK----t~s~V~l~h~---------------------ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~ 94 (135)
=||||..++. |..+|.|.=. |--+.|.+.. ..+-+.|++.+...|..++.
T Consensus 28 IGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~----~e~~~~A~~~I~~ll~~~~~ 102 (131)
T 1k1g_A 28 IGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANT----MENVKKAVEQIRNILKQGIE 102 (131)
T ss_dssp HCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESS----HHHHHHHHHHHHHHHTTTTS
T ss_pred ECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECC----HHHHHHHHHHHHHHHhccCC
Confidence 3888888874 4444544431 1125566654 34667888888887766543
No 33
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=29.63 E-value=31 Score=21.99 Aligned_cols=49 Identities=18% Similarity=0.244 Sum_probs=31.0
Q ss_pred CCCCcccCc--cCceEEEEEeCC--e---eEEEecCcCCHHHHHHHHHHHHHHHHHHhh
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPT--G---IVIKCHQSRSLSENRKTARELLVAQWDVQV 93 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~pt--g---i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~ 93 (135)
|+||.+++. ..|.|+|...+. | -.|....+ ..+-+.|...+.+.+.+..
T Consensus 23 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~---~~~v~~A~~~I~~~i~~~~ 78 (82)
T 1zzk_A 23 GKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT---QDQIQNAQYLLQNSVKQYS 78 (82)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEEC---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeC---HHHHHHHHHHHHHHHHhcc
Confidence 999999984 456666655432 1 22333332 3577788888888887653
No 34
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=28.18 E-value=28 Score=25.32 Aligned_cols=27 Identities=22% Similarity=0.612 Sum_probs=21.1
Q ss_pred EEeeccCCCCcccCccCceEEEEEeCCe
Q psy4479 36 RFVRGSGPGGQAVAKTNNCVVLTHIPTG 63 (135)
Q Consensus 36 ~~~RsSGPGGQ~VNKt~s~V~l~h~ptg 63 (135)
+++||+|--.|-+.+....|.|+ +|+|
T Consensus 80 ~laRsAGt~a~ii~ke~~~~~vr-LPSG 106 (136)
T 2ftc_B 80 QYIRAAGTCGVLLRKVNGTAIIQ-LPSK 106 (136)
T ss_pred EEEEeCCCeEEEEEecCCEEEEE-CCCC
Confidence 57888888888888877666655 6887
No 35
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=28.12 E-value=19 Score=23.00 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=28.3
Q ss_pred CCCCcccCc--cCceEEEEEeCC-----eeEEEecCcCCHHHHHHHHHHHHHHHHHHh
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPT-----GIVIKCHQSRSLSENRKTARELLVAQWDVQ 92 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~pt-----gi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~ 92 (135)
|+||.+++. -.|.+.|...+. .=.|....+ . .+-+.|...+.+.+.+.
T Consensus 22 GkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~--~-~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 22 GRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGS--A-ASISLAQYLINARLSSE 76 (82)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC--H-HHHHHHHHHHHHHTC--
T ss_pred CCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcC--H-HHHHHHHHHHHHHHHhh
Confidence 999999994 456666665441 122223322 2 66777888877776543
No 36
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=28.09 E-value=91 Score=24.46 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHh
Q psy4479 78 RKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDALKKAWKER 131 (135)
Q Consensus 78 k~~A~~rL~~~L~~~~~~~ps~~~~~kRl~~kk~~~~k~~r~k~~~~k~~~k~~ 131 (135)
.+.|+.+|.+.+.+.....|.. .++.|+..|+-=.|=.++.-.++|.-||+.
T Consensus 127 IAsaIKklLDAvn~v~~~~~~~--~k~~le~~KreFVkySKrFS~TLKeYFkd~ 178 (213)
T 3ajm_A 127 IASAIKELLDTVNNVFKKYQYQ--NRRALEHQKKEFVKYSKSFSDTLKTYFKDG 178 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhcchh--HHHHHHHHHHHHHHHhhHhhHHHHHHHhcC
Confidence 4567888888888877553332 677787766665666677889999999864
No 37
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=27.48 E-value=20 Score=24.86 Aligned_cols=33 Identities=18% Similarity=-0.071 Sum_probs=24.1
Q ss_pred ecCcCCHHHHHHHHHHHHHHHHHHhh-cCCCCHH
Q psy4479 68 CHQSRSLSENRKTARELLVAQWDVQV-NGEDSLN 100 (135)
Q Consensus 68 ~~~~RSq~~Nk~~A~~rL~~~L~~~~-~~~ps~~ 100 (135)
+++.|++..+-+.||+.|+..|=..- ..+.|+.
T Consensus 30 ~~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKI 63 (97)
T 4aya_A 30 VDDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKM 63 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHH
T ss_pred cccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHH
Confidence 77889999999999999999876442 2244543
No 38
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=27.46 E-value=34 Score=23.99 Aligned_cols=47 Identities=13% Similarity=0.210 Sum_probs=31.5
Q ss_pred CCCCcccCc--cCceEEEEEeCCe-----eEEEecCcCCHHHHHHHHHHHHHHHHHHhh
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPTG-----IVIKCHQSRSLSENRKTARELLVAQWDVQV 93 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~ptg-----i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~ 93 (135)
|+||.+++. ..|.+.|...+.| ++|... ..+-..|+..+.+.+.+..
T Consensus 21 GkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~-----~~~v~~A~~~I~~~i~e~~ 74 (160)
T 2jzx_A 21 GKKGESVKKMREESGARINISEGNCPERIITLAGP-----TNAIFKAFAMIIDKLEEDI 74 (160)
T ss_dssp CGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEE-----HHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeC-----HHHHHHHHHHHHHHHHhhc
Confidence 899999984 4566676665543 344332 4677888888887777643
No 39
>2ywq_A Protein Y, ribosomal subunit interface protein; sigma-54 modulation protein family, structural genomics; 2.64A {Thermus thermophilus} SCOP: d.204.1.1
Probab=23.96 E-value=1.6e+02 Score=19.33 Aligned_cols=40 Identities=13% Similarity=0.019 Sum_probs=25.5
Q ss_pred ceEEEEEeCCeeEEEecC-cCCHHHHHHHHHHHHHHHHHHh
Q psy4479 53 NCVVLTHIPTGIVIKCHQ-SRSLSENRKTARELLVAQWDVQ 92 (135)
Q Consensus 53 s~V~l~h~ptgi~v~~~~-~RSq~~Nk~~A~~rL~~~L~~~ 92 (135)
..|+++-...|..+.+.+ .-+-+.--..|+++|...|...
T Consensus 54 ~~~eitv~~~g~~l~a~~~~~d~y~Aid~a~dklerqL~k~ 94 (105)
T 2ywq_A 54 ARAEIQVDLPGGLVRVEEEDADLYAAIDRAVDRLETQVKRF 94 (105)
T ss_dssp EEEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEEcCCcEEEEEEccCCHHHHHHHHHHHHHHHHHHH
Confidence 367776544576666653 4556777777777777766654
No 40
>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=23.68 E-value=35 Score=20.69 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=11.1
Q ss_pred hHHHHHHHHHhcC
Q psy4479 121 LDALKKAWKEREG 133 (135)
Q Consensus 121 ~~~~k~~~k~~e~ 133 (135)
.+|.|.+||+-||
T Consensus 3 kqEvK~E~Ke~EG 15 (48)
T 3c01_A 3 KEEVKREMKEQEG 15 (48)
T ss_pred HHHHHHHHHhccC
Confidence 3688999999998
No 41
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=23.59 E-value=33 Score=24.56 Aligned_cols=46 Identities=13% Similarity=0.232 Sum_probs=29.8
Q ss_pred CCCCcccCc--cCceEEEEEeCCe----------eEEEecCcCCHHHHHHHHHHHHHHHHHHh
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPTG----------IVIKCHQSRSLSENRKTARELLVAQWDVQ 92 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~ptg----------i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~ 92 (135)
|+||.++++ ..|.|+|...+.+ ++|... ..|-..|...+.+.+...
T Consensus 22 GkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~-----~~~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 22 GKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT-----IEALNAVHGFIAEKIREM 79 (178)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEEC-----HHHHHHHHHHHHHHHTCC
T ss_pred CCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeC-----HHHHHHHHHHHHHHHhcc
Confidence 899999984 4566777665432 333332 456777888777777543
No 42
>2rrf_A Zinc finger FYVE domain-containing protein 21; zfyve21, PH, unknown function; NMR {Homo sapiens}
Probab=22.13 E-value=2e+02 Score=21.13 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=40.9
Q ss_pred EEEee-ccCCCCcccCccCceEEEEEeCCe------eEEEecCc----CCHHHHHHHHHHHHHHHHHHhhcC
Q psy4479 35 ERFVR-GSGPGGQAVAKTNNCVVLTHIPTG------IVIKCHQS----RSLSENRKTARELLVAQWDVQVNG 95 (135)
Q Consensus 35 ~~~~R-sSGPGGQ~VNKt~s~V~l~h~ptg------i~v~~~~~----RSq~~Nk~~A~~rL~~~L~~~~~~ 95 (135)
+++.. ++.|||- |.+.+.+.|.+.+.| +.+...++ +-|..-=-.||.+-..+|.+.-..
T Consensus 66 vqiL~eg~~~ggg--~~rasGm~l~Yk~~g~~~~~ql~lt~~~d~~~~kk~s~aWlaAm~KA~KllyEsr~~ 135 (141)
T 2rrf_A 66 VQILTEGFPPGGG--NARATGMFLQYTVPGTEGVTQLKLTVVEDVTVGRRQAVAWLVAMHKAAKLLYESRDQ 135 (141)
T ss_dssp EECCCCSSCSSSS--SCCCSCCEEEECCTTSSSCEEEEEECCCSSSCCHHHHHHHHHHHHHHHHHHHHSCSS
T ss_pred EEEeccCCCCCCC--cceeeEEEEEeeCCCccceeEEEEeeccccCcchhhhHHHHHHHHHHHHHHHHhccc
Confidence 44444 6778753 578899999998876 55555555 556666677888888888776544
No 43
>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A
Probab=21.55 E-value=40 Score=25.70 Aligned_cols=22 Identities=23% Similarity=0.438 Sum_probs=16.7
Q ss_pred CCCCcCCCCeEEEEeeccCCCCcc
Q psy4479 24 KVPKIDEKDIQERFVRGSGPGGQA 47 (135)
Q Consensus 24 ~~~~i~~~dl~~~~~RsSGPGGQ~ 47 (135)
+++++|...+++. .+||.||+|
T Consensus 95 DdldL~~G~irlk--~~G~~gGHN 116 (193)
T 4hoy_A 95 DELDMNPGVIRLK--TGGGHGGHN 116 (193)
T ss_dssp EETTSCTTCEEEE--ESCCCTTCH
T ss_pred eccccccCceeec--cCCCCCCcC
Confidence 4557778888886 689999975
No 44
>3pa8_A Toxin B; CLAN CD cysteine protease, protease, toxin-peptide in complex; HET: 621 IHP; 2.00A {Clostridium difficile} PDB: 3pee_B*
Probab=21.48 E-value=49 Score=26.65 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=20.4
Q ss_pred CCCcccCcc-------CceEEEEEeCCe--eEEEe
Q psy4479 43 PGGQAVAKT-------NNCVVLTHIPTG--IVIKC 68 (135)
Q Consensus 43 PGGQ~VNKt-------~s~V~l~h~ptg--i~v~~ 68 (135)
-.||||||. ++++.|.|.+-+ |++++
T Consensus 214 ~~g~WvnK~~a~i~~~~nK~vl~wn~~en~l~~~~ 248 (254)
T 3pa8_A 214 HSGEWINKEESIIKDISSKEYISFNPKENKITVKS 248 (254)
T ss_dssp TTSCEECHHHHHHTTCCCCEEEEEETTTTEEEEEE
T ss_pred cCCchhhhhhhhhhccCccEEEEecCCCCEEEEee
Confidence 369999998 799999999843 55544
No 45
>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A
Probab=21.29 E-value=42 Score=25.80 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=16.9
Q ss_pred CCCCcCCCCeEEEEeeccCCCCcc
Q psy4479 24 KVPKIDEKDIQERFVRGSGPGGQA 47 (135)
Q Consensus 24 ~~~~i~~~dl~~~~~RsSGPGGQ~ 47 (135)
+++++|...+++.. +||.||+|
T Consensus 101 DdldLp~G~irlk~--gGs~gGHN 122 (199)
T 4fyj_A 101 DELDMPPGVAKLKT--GGGHGGHN 122 (199)
T ss_dssp EETTSCTTCEEEEE--SCCCTTCH
T ss_pred ecCCCCCceEEEec--CCCCCCCC
Confidence 34567777777765 89999998
Done!