Query psy4479
Match_columns 135
No_of_seqs 111 out of 1063
Neff 5.1
Searched_HMMs 13730
Date Fri Aug 16 18:10:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4479.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4479hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gqea_ e.38.1.1 (A:) Polypept 100.0 8.4E-35 6.1E-39 244.3 10.8 89 4-93 208-296 (362)
2 d2b3tb1 e.38.1.1 (B:7-354) Pep 100.0 7.2E-34 5.3E-38 237.2 9.7 90 5-95 185-274 (344)
3 d1rq0a_ e.38.1.1 (A:) Peptide 100.0 1.2E-33 8.9E-38 235.2 8.9 88 4-93 171-258 (333)
4 d1j26a_ d.50.4.1 (A:) Ict1 pro 99.9 6.3E-26 4.6E-30 163.6 11.1 74 22-95 11-109 (112)
5 d2ctma1 d.51.1.1 (A:8-88) Vigi 81.1 0.38 2.8E-05 29.9 2.1 49 42-93 26-80 (81)
6 d2ctfa1 d.51.1.1 (A:7-96) Vigi 77.7 0.86 6.3E-05 28.9 3.1 49 42-93 37-88 (90)
7 d2ctla1 d.51.1.1 (A:8-91) Vigi 70.5 1.1 7.9E-05 27.7 2.1 49 42-93 26-82 (84)
8 d2ctea1 d.51.1.1 (A:8-88) Vigi 69.0 0.73 5.3E-05 28.5 1.0 47 42-93 26-79 (81)
9 d2ctka1 d.51.1.1 (A:8-98) Vigi 65.9 1.8 0.00013 27.1 2.4 49 42-93 26-79 (91)
10 d1tuaa2 d.51.1.1 (A:85-188) Hy 62.7 6.7 0.00049 25.7 5.0 61 42-112 29-91 (104)
11 d2ctja1 d.51.1.1 (A:8-89) Vigi 55.3 2.8 0.00021 25.5 1.9 48 42-92 26-79 (82)
12 d1viga_ d.51.1.1 (A:) Vigilin 54.1 3.9 0.00029 24.3 2.4 44 42-88 21-69 (71)
13 d2ba0a3 d.51.1.1 (A:136-219) E 50.0 3 0.00022 26.1 1.4 49 42-94 17-67 (84)
14 d2axya1 d.51.1.1 (A:11-81) Pol 49.4 3.7 0.00027 24.4 1.7 47 42-91 20-71 (71)
15 d2z0sa2 d.51.1.1 (A:148-234) E 43.1 13 0.00092 23.5 3.7 48 42-93 17-67 (87)
16 d1x4na1 d.51.1.1 (A:8-86) Far 42.2 10 0.00073 22.6 3.0 47 42-91 24-77 (79)
17 d1zzka1 d.51.1.1 (A:11-85) HnR 41.6 7.5 0.00055 22.8 2.3 48 42-92 20-74 (75)
18 d1pina2 d.26.1.1 (A:45-163) Mi 38.7 12 0.00089 24.0 3.2 16 45-60 1-16 (119)
19 d1tuaa1 d.51.1.1 (A:1-84) Hypo 35.8 11 0.00079 23.5 2.4 46 42-87 19-68 (84)
20 d1x4ma1 d.51.1.1 (A:8-88) Far 30.3 9 0.00065 23.0 1.2 46 42-90 24-78 (81)
21 d1j4wa1 d.51.1.1 (A:1-74) Far 29.2 17 0.0012 21.2 2.4 48 42-92 19-73 (74)
22 d1j4wa2 d.51.1.1 (A:104-174) F 26.9 11 0.00083 21.9 1.2 45 42-89 17-71 (71)
23 d1foea2 b.55.1.1 (A:1240-1401) 26.2 71 0.0051 22.3 5.7 56 28-93 96-159 (162)
24 d2ptha_ c.56.3.1 (A:) Peptidyl 23.5 16 0.0012 25.9 1.8 23 24-48 93-115 (193)
25 d1m5ya3 d.26.1.1 (A:279-386) P 22.5 81 0.0059 19.2 5.4 27 49-79 1-27 (108)
26 d1uw4a_ d.58.7.4 (A:) RNA proc 21.9 15 0.0011 23.3 1.2 12 53-64 2-13 (91)
27 d1ryba_ c.56.3.1 (A:) Chloropl 21.6 17 0.0013 25.7 1.6 22 24-47 93-114 (191)
28 d1we8a_ d.51.1.1 (A:) Tudor an 21.4 38 0.0028 20.9 3.2 48 42-92 31-87 (104)
No 1
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=8.4e-35 Score=244.27 Aligned_cols=89 Identities=35% Similarity=0.491 Sum_probs=84.7
Q ss_pred eeEeecceeeeeeecCCCCCCCCCcCCCCeEEEEeeccCCCCcccCccCceEEEEEeCCeeEEEecCcCCHHHHHHHHHH
Q psy4479 4 FRRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARE 83 (135)
Q Consensus 4 ~r~~ts~~~v~v~~~~l~~~~~~~i~~~dl~~~~~RsSGPGGQ~VNKt~s~V~l~h~ptgi~v~~~~~RSq~~Nk~~A~~ 83 (135)
-|+|||||+|.|+ |.++....+.|++.||+|+++|||||||||||||+|+|+|+|+||||+|.||++|||++||+.|+.
T Consensus 208 gr~hTS~a~V~v~-P~~~~~~~~~i~~~dl~i~~~rs~g~GGQ~vN~t~savri~H~ptgi~v~~q~ersq~~Nk~~A~~ 286 (362)
T d1gqea_ 208 GRRHTSFSSAFVY-PEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMK 286 (362)
T ss_dssp CCEEEEEEEEEEE-ECCBTTBCCCCCGGGEEEEEECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHH
T ss_pred ceEEEEEEEEEEe-ecCCCccceecChHHeEEEEeecCCCCccchhhhhceeEEEecCchhHHHhhhcchhhHHHHHHHH
Confidence 4899999999999 688777888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q psy4479 84 LLVAQWDVQV 93 (135)
Q Consensus 84 rL~~~L~~~~ 93 (135)
.|+++|.+..
T Consensus 287 ~L~~~l~~~~ 296 (362)
T d1gqea_ 287 QMKAKLYEVE 296 (362)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 2
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=7.2e-34 Score=237.19 Aligned_cols=90 Identities=31% Similarity=0.508 Sum_probs=86.1
Q ss_pred eEeecceeeeeeecCCCCCCCCCcCCCCeEEEEeeccCCCCcccCccCceEEEEEeCCeeEEEecCcCCHHHHHHHHHHH
Q psy4479 5 RRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTAREL 84 (135)
Q Consensus 5 r~~ts~~~v~v~~~~l~~~~~~~i~~~dl~~~~~RsSGPGGQ~VNKt~s~V~l~h~ptgi~v~~~~~RSq~~Nk~~A~~r 84 (135)
|+|||||+|.|+ |.++....+.|+++||+|+++|||||||||||||+|+|+|+|+||||+|.||++|||++||+.|+..
T Consensus 185 r~hts~~~v~v~-p~~~~~~~~~i~~~dl~i~~~rssg~GGQ~vnkt~sAVRi~H~ptGi~v~~q~eRSq~~Nk~~A~~~ 263 (344)
T d2b3tb1 185 RIHTSACTVAVM-PELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSV 263 (344)
T ss_dssp CCEEEEEEEECC-BCCCTTTCCCCCSSSEEEEECCSSCCCTTTCCCSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHH
T ss_pred ccccceeeEeee-cccccccccccCcccceEEEecCCCccccchhhhhceeEEEEcCCceEEEccCCCcchHHHHHHHHH
Confidence 899999999999 6888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC
Q psy4479 85 LVAQWDVQVNG 95 (135)
Q Consensus 85 L~~~L~~~~~~ 95 (135)
|+.+|.+....
T Consensus 264 L~~kl~~~~~~ 274 (344)
T d2b3tb1 264 LGARIHAAEMA 274 (344)
T ss_dssp HHHHHTTTTTT
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 3
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=1.2e-33 Score=235.25 Aligned_cols=88 Identities=36% Similarity=0.478 Sum_probs=77.5
Q ss_pred eeEeecceeeeeeecCCCCCCCCCcCCCCeEEEEeeccCCCCcccCccCceEEEEEeCCeeEEEecCcCCHHHHHHHHHH
Q psy4479 4 FRRHLSLASSLFRKYDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARE 83 (135)
Q Consensus 4 ~r~~ts~~~v~v~~~~l~~~~~~~i~~~dl~~~~~RsSGPGGQ~VNKt~s~V~l~h~ptgi~v~~~~~RSq~~Nk~~A~~ 83 (135)
-|+|||||+|+|+| ..+. ..+.|+++||+|+|+|||||||||||||+|+|+|+|+||||+|.||++|||++||+.|+.
T Consensus 171 ~r~hTs~~~V~v~p-~~~~-~~v~i~~~dl~i~~~RssG~GGQ~VNkt~sAVRitH~PTGi~v~~q~eRSQ~~Nk~~A~~ 248 (333)
T d1rq0a_ 171 GRIHTSTATVAVLP-EIEE-KDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALR 248 (333)
T ss_dssp CCCEEEEEEEEEEE-CCCG-GGSCCCGGGEEEEEECCCC----CCSSSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHH
T ss_pred CceEEEEEEEEEec-cccc-ccccccccceeEEeecCCccccchhhhhhheeEEEEcCCccEEEcccccccHHHHHHHHH
Confidence 48999999999994 5433 367899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q psy4479 84 LLVAQWDVQV 93 (135)
Q Consensus 84 rL~~~L~~~~ 93 (135)
.|+++|.+..
T Consensus 249 ~L~~kl~~~~ 258 (333)
T d1rq0a_ 249 ILRARLYQLQ 258 (333)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 4
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.93 E-value=6.3e-26 Score=163.58 Aligned_cols=74 Identities=20% Similarity=0.201 Sum_probs=66.5
Q ss_pred CCCCCCcCCCCeEEEEeeccCCCCcccCccCceEEEEEe-------C------------------CeeEEEecCcCCHHH
Q psy4479 22 YSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHI-------P------------------TGIVIKCHQSRSLSE 76 (135)
Q Consensus 22 ~~~~~~i~~~dl~~~~~RsSGPGGQ~VNKt~s~V~l~h~-------p------------------tgi~v~~~~~RSq~~ 76 (135)
......||.++|+|+|+|||||||||||||+|+|+|+|. | ..|+|.|+++|||.+
T Consensus 11 ~~~~~~Ip~~~i~~~f~RSsGPGGQ~VNKv~TkV~Lr~~v~~s~~l~~~~~~~l~~~~~~~i~~~g~l~I~s~~~RsQ~~ 90 (112)
T d1j26a_ 11 KQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFR 90 (112)
T ss_dssp CSSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHH
T ss_pred hhhcCccCHHHeEEEEEEcCCCCCCccceeccEEEEEEeccccccCCHHHHHHHHHHhhhcccCCCeEEEEEcccCCHHH
Confidence 334558999999999999999999999999999999973 2 259999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q psy4479 77 NRKTARELLVAQWDVQVNG 95 (135)
Q Consensus 77 Nk~~A~~rL~~~L~~~~~~ 95 (135)
|+++|+++|.++|.++..|
T Consensus 91 Nr~~a~~kL~~li~~A~kP 109 (112)
T d1j26a_ 91 NLAECLQKIRDMIAEASGP 109 (112)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 9999999999999998754
No 5
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=81.12 E-value=0.38 Score=29.88 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=34.3
Q ss_pred CCCCcccCc--cCceEEEEEeCCe----eEEEecCcCCHHHHHHHHHHHHHHHHHHhh
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPTG----IVIKCHQSRSLSENRKTARELLVAQWDVQV 93 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~ptg----i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~ 93 (135)
|+||.+++. ..|.|.|.+.+.+ -.|.... ...|-+.|.+.|..++.+++
T Consensus 26 G~~G~~i~~I~~~tg~~I~~p~~~~~~~~~v~I~G---~~~~V~~A~~~I~~i~~e~~ 80 (81)
T d2ctma1 26 GARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTG---LPENVEEAIDHILNLEEEYL 80 (81)
T ss_dssp CSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEES---CHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHhCCEEEeCCccCCCCCEEEEeC---CHHHHHHHHHHHHHHHHHHh
Confidence 999999984 6677787774432 1333333 35678899999999888765
No 6
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=77.72 E-value=0.86 Score=28.95 Aligned_cols=49 Identities=20% Similarity=0.164 Sum_probs=35.3
Q ss_pred CCCCcccCcc--C-ceEEEEEeCCeeEEEecCcCCHHHHHHHHHHHHHHHHHHhh
Q psy4479 42 GPGGQAVAKT--N-NCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQV 93 (135)
Q Consensus 42 GPGGQ~VNKt--~-s~V~l~h~ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~ 93 (135)
||||+++++- + +.|.|.+.+..-.|..... ..|-+.|.+.|.+++.++.
T Consensus 37 G~~G~~I~~i~~~~~~v~I~~~~~~~~v~i~G~---~~~ve~Ak~~I~~iv~el~ 88 (90)
T d2ctfa1 37 GKKGQNLAKITQQMPKVHIEFTEGEDKITLEGP---TEDVSVAQEQIEGMVKDLI 88 (90)
T ss_dssp TTTTCHHHHHHHHCSSSEEEECSSSCEEEEEEC---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHcCCcEEeeCCCCceEEEeCC---HHHHHHHHHHHHHHHHHHh
Confidence 9999999973 4 4789888665544555443 4577888888888887754
No 7
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.51 E-value=1.1 Score=27.72 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=33.2
Q ss_pred CCCCcccCc--cCceEEEEEeCCe------eEEEecCcCCHHHHHHHHHHHHHHHHHHhh
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPTG------IVIKCHQSRSLSENRKTARELLVAQWDVQV 93 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~ptg------i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~ 93 (135)
|+||++++. -.|.|+|.+.+.+ =.|..... ..|-+.|...+.+++.++.
T Consensus 26 G~~G~~i~~I~~~t~~~I~~~~~~~~~~~~~~i~I~G~---~e~v~~A~~~I~~~i~e~e 82 (84)
T d2ctla1 26 GRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY---EKNTEAARDAILRIVGELE 82 (84)
T ss_dssp CSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHhCCEEEECCCCCCCCCcceEEEECC---HHHHHHHHHHHHHHHHhHh
Confidence 999999994 5567888875422 12333332 4677889999888887653
No 8
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.99 E-value=0.73 Score=28.48 Aligned_cols=47 Identities=17% Similarity=0.131 Sum_probs=32.3
Q ss_pred CCCCcccCc--cCceEEEEEeCCe-----eEEEecCcCCHHHHHHHHHHHHHHHHHHhh
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPTG-----IVIKCHQSRSLSENRKTARELLVAQWDVQV 93 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~ptg-----i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~ 93 (135)
|+||.++++ ..|.|.|.+.+.+ +++.- ...|-+.|.+.+.+++.+..
T Consensus 26 G~~G~~i~~I~~~tg~~I~~p~~~~~~~~v~I~G-----~~~~v~~A~~~I~~iv~e~~ 79 (81)
T d2ctea1 26 GKNGEKLQDLELKTATKIQIPRPDDPSNQIKITG-----TKEGIEKARHEVLLISAEQD 79 (81)
T ss_dssp CSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEE-----CHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHhCCEEEECCCCCCCCEEEEEe-----CHHHHHHHHHHHHHHHHHHh
Confidence 999999994 5667777775432 33322 23578888888888877643
No 9
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.86 E-value=1.8 Score=27.13 Aligned_cols=49 Identities=16% Similarity=0.098 Sum_probs=34.1
Q ss_pred CCCCcccCc--cCceEEEEEeCCe---eEEEecCcCCHHHHHHHHHHHHHHHHHHhh
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPTG---IVIKCHQSRSLSENRKTARELLVAQWDVQV 93 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~ptg---i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~ 93 (135)
|+||.+++. -.|.|.|.+.+.| -.|..... ..|-+.|.+.|.+++.+..
T Consensus 26 G~~G~~i~~I~~~tg~~I~~p~~~~~~~~v~I~G~---~~~V~~A~~~I~~~v~e~~ 79 (91)
T d2ctka1 26 GQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL---AANLDRAKAGLLERVKELQ 79 (91)
T ss_dssp CSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHhCCEEEECCCCCCcceEEEECC---HHHHHHHHHHHHHHHHHHH
Confidence 999999994 5667888886543 23333332 3588899999888887543
No 10
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Probab=62.71 E-value=6.7 Score=25.67 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=38.8
Q ss_pred CCCCcccCc--cCceEEEEEeCCeeEEEecCcCCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRA 112 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~~~ps~~~~~kRl~~kk~~ 112 (135)
||||-+++. ..|.|.|...-+++++-.+ ..+.+.|.+.+...+. .|..+...+-|+.+++.
T Consensus 29 G~gGktik~Ie~~Tg~~I~I~d~~v~iig~-----~e~i~~A~~~Ie~li~-----~~e~g~VY~~le~~~~e 91 (104)
T d1tuaa2 29 GEGGRARRTIEEMTDTYINVGEYEVAIIGD-----YERAMAAKQAIEMLAE-----GRMHSTVYRHLERIMRE 91 (104)
T ss_dssp CGGGHHHHHHHHHHTCEEEECSSEEEEEEE-----HHHHHHHHHHHHHHHT-----TCCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHCCeEEEeCCeEEEEEC-----chhHHHHHHHHHHHHc-----CCCccHHHHHHHHHHHH
Confidence 899999884 4455666655566666542 2356667666665554 25567778888755444
No 11
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.30 E-value=2.8 Score=25.51 Aligned_cols=48 Identities=15% Similarity=0.170 Sum_probs=32.3
Q ss_pred CCCCcccCcc--C-ceEEEEEeCCe---eEEEecCcCCHHHHHHHHHHHHHHHHHHh
Q psy4479 42 GPGGQAVAKT--N-NCVVLTHIPTG---IVIKCHQSRSLSENRKTARELLVAQWDVQ 92 (135)
Q Consensus 42 GPGGQ~VNKt--~-s~V~l~h~ptg---i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~ 92 (135)
|+||+++|.- . ++|.+.+.+.| -.|.... ...|-+.|.+.|.+++.+.
T Consensus 26 Gk~G~~I~~I~~~~~~~~I~~~~~~~~~~~v~I~G---~~~~v~~A~~~I~~~v~e~ 79 (82)
T d2ctja1 26 GTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRG---PSSDVEKAKKQLLHLAEEK 79 (82)
T ss_dssp CSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEES---CHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHcCCcEEEEeCCCCCCceEEEeC---CHHHHHHHHHHHHHHHhhh
Confidence 9999999963 3 47887764433 2333333 2457788888888888764
No 12
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.15 E-value=3.9 Score=24.27 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=27.2
Q ss_pred CCCCcccCc--cCceEEEEEeCCe---eEEEecCcCCHHHHHHHHHHHHHHH
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPTG---IVIKCHQSRSLSENRKTARELLVAQ 88 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~ptg---i~v~~~~~RSq~~Nk~~A~~rL~~~ 88 (135)
|+||++++. -.|.|++.+.+.+ =.|....+ ..|-+.|.+.|.++
T Consensus 21 G~~G~~i~~I~~~tg~~I~i~~~~~~~~~v~I~G~---~~~v~~A~~~I~~i 69 (71)
T d1viga_ 21 GKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGD---PQGVQQAKRELLEL 69 (71)
T ss_dssp CSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEES---SHHHHHHHHHHHHT
T ss_pred CCCCchHHHHHHHhCCEEEeCCCCCCCCEEEEECC---HHHHHHHHHHHHHH
Confidence 999999994 5677887775432 22333333 35566676666543
No 13
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=50.03 E-value=3 Score=26.12 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=32.9
Q ss_pred CCCCcccC--ccCceEEEEEeCCeeEEEecCcCCHHHHHHHHHHHHHHHHHHhhc
Q psy4479 42 GPGGQAVA--KTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQVN 94 (135)
Q Consensus 42 GPGGQ~VN--Kt~s~V~l~h~ptgi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~~ 94 (135)
||||.++| ...|.|+|.....|.+ ....+ . .|-+.|.+.+...+.++-.
T Consensus 17 G~gG~~I~~I~~~tg~~I~i~~~g~v-~I~G~--~-e~v~~A~~~I~~i~~ea~~ 67 (84)
T d2ba0a3 17 GKKGSMIKLLKSELDVQIVVGQNGLI-WVNGD--R-RKVSIAEEAIYLIEQEAHT 67 (84)
T ss_dssp CGGGHHHHHHHHHHTCEEEECTTSEE-EEESC--H-HHHHHHHHHHHHHHHCSCC
T ss_pred CCcHHHHHHHHHHHCCEEEECCCCEE-EEEeC--H-HHHHHHHHHHHHHHHhccc
Confidence 99999999 4667777766556633 33332 2 5778888888777766543
No 14
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.37 E-value=3.7 Score=24.37 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=30.7
Q ss_pred CCCCcccC--ccCceEEEEEeCCe---eEEEecCcCCHHHHHHHHHHHHHHHHHH
Q psy4479 42 GPGGQAVA--KTNNCVVLTHIPTG---IVIKCHQSRSLSENRKTARELLVAQWDV 91 (135)
Q Consensus 42 GPGGQ~VN--Kt~s~V~l~h~ptg---i~v~~~~~RSq~~Nk~~A~~rL~~~L~~ 91 (135)
|+||.+++ ...|.+.+...+.+ =++....+ ..|-..|...+.++|.+
T Consensus 20 Gk~G~~I~~I~~~tga~I~i~~~~~~er~v~I~G~---~~~v~~A~~~I~~~l~E 71 (71)
T d2axya1 20 GKKGESVKKMREESGARINISEGNCPERIITLAGP---TNAIFKAFAMIIDKLEE 71 (71)
T ss_dssp CGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC---HHHHHHHHHHHHHHHHC
T ss_pred CCCChhHHHHHHHhCCEEEEcCCCCCcceEEEEEC---HHHHHHHHHHHHHHhcC
Confidence 88898888 46667776665443 13333332 56788888888887753
No 15
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Probab=43.12 E-value=13 Score=23.49 Aligned_cols=48 Identities=10% Similarity=0.064 Sum_probs=32.3
Q ss_pred CCCCcccCc--cCceEEEEEeCCe-eEEEecCcCCHHHHHHHHHHHHHHHHHHhh
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPTG-IVIKCHQSRSLSENRKTARELLVAQWDVQV 93 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~ptg-i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~ 93 (135)
||||-++|. ..|.|+|.--..| ++|.+.+ ..+...|.+.+.....++.
T Consensus 17 G~gG~~ik~i~~~t~~~I~I~d~G~V~I~g~~----~~~~~~A~~~I~~I~~ea~ 67 (87)
T d2z0sa2 17 GRKMSMLKTLEEKTECKIFVARNGRIHLECPN----EDLEAIAVMAIKIIDEEAY 67 (87)
T ss_dssp CGGGHHHHHHHHHHCCEEEEETTTEEEEECSC----HHHHHHHHHHHHHHHHCSC
T ss_pred CCCCcHHHHHHHHHCCEEEECCCcEEEEEeCC----HHHHHHHHHHHHHHHHhch
Confidence 999999994 5677777776777 5555544 3455666777766655544
No 16
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}
Probab=42.16 E-value=10 Score=22.58 Aligned_cols=47 Identities=19% Similarity=0.312 Sum_probs=30.8
Q ss_pred CCCCcccC--ccCceEEEEEeCC--e---eEEEecCcCCHHHHHHHHHHHHHHHHHH
Q psy4479 42 GPGGQAVA--KTNNCVVLTHIPT--G---IVIKCHQSRSLSENRKTARELLVAQWDV 91 (135)
Q Consensus 42 GPGGQ~VN--Kt~s~V~l~h~pt--g---i~v~~~~~RSq~~Nk~~A~~rL~~~L~~ 91 (135)
|+||.+++ ...|.|.|...+. + -.|....+ ..+-+.|...|.+.|.+
T Consensus 24 G~~G~~i~~I~~~tg~~I~i~~~~~~~~~r~v~I~G~---~~~v~~A~~~I~~~i~e 77 (79)
T d1x4na1 24 GRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT---PESVQSAKRLLDQIVEK 77 (79)
T ss_dssp CSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEEC---HHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHhCCEEEEcCCCCCCCceEEEEEeC---HHHHHHHHHHHHHHHHc
Confidence 89999999 4667777766431 1 12333332 35778899988888875
No 17
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.62 E-value=7.5 Score=22.84 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=32.0
Q ss_pred CCCCcccCc--cCceEEEEEeCC-----eeEEEecCcCCHHHHHHHHHHHHHHHHHHh
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPT-----GIVIKCHQSRSLSENRKTARELLVAQWDVQ 92 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~pt-----gi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~ 92 (135)
|+||.+++. ..|.|.+.+.+. .-.|....+ ..+-+.|...+.++|.++
T Consensus 20 G~~G~~I~~I~~~sga~I~i~~~~~~~~~r~i~I~G~---~~~v~~A~~~I~~~i~e~ 74 (75)
T d1zzka1 20 GKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT---QDQIQNAQYLLQNSVKQY 74 (75)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEEC---HHHHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHhhcCCeEEEccCCCCCCceEEEEEeC---HHHHHHHHHHHHHHHHhc
Confidence 889999984 566677776432 123333333 367888999998888775
No 18
>d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.67 E-value=12 Score=24.02 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=13.3
Q ss_pred CcccCccCceEEEEEe
Q psy4479 45 GQAVAKTNNCVVLTHI 60 (135)
Q Consensus 45 GQ~VNKt~s~V~l~h~ 60 (135)
|.+.+.....|+++||
T Consensus 1 ~~~~~~~p~~vr~~HI 16 (119)
T d1pina2 1 GKNGQGEPARVRCSHL 16 (119)
T ss_dssp CCCSCCCCSCEEEEEE
T ss_pred CCCCCCCCcEEEEEEE
Confidence 5667778899999997
No 19
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Probab=35.84 E-value=11 Score=23.48 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=27.1
Q ss_pred CCCCcccCc--cCceEEEEEeC-Ce-eEEEecCcCCHHHHHHHHHHHHHH
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIP-TG-IVIKCHQSRSLSENRKTARELLVA 87 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~p-tg-i~v~~~~~RSq~~Nk~~A~~rL~~ 87 (135)
||||-+++. -.|.|.|.... +| +.+.+...-....+...|.+.+.+
T Consensus 19 G~gG~~Ik~i~~~tg~~I~Id~d~g~v~i~~~~~~~~~~a~~~a~~iI~a 68 (84)
T d1tuaa1 19 GPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKA 68 (84)
T ss_dssp CGGGHHHHHHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHCCEEEEEcCCCeEEEecCCccccHHHHHHHHHHHHH
Confidence 899999985 45566665542 23 566665554444455555554443
No 20
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.32 E-value=9 Score=23.02 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=27.2
Q ss_pred CCCCcccCc--cCceEEEEEeCC-------eeEEEecCcCCHHHHHHHHHHHHHHHHH
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPT-------GIVIKCHQSRSLSENRKTARELLVAQWD 90 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~pt-------gi~v~~~~~RSq~~Nk~~A~~rL~~~L~ 90 (135)
|+||++++. ..|.|.+...+. .=.|....+. .+-+.|...+.+.|.
T Consensus 24 Gk~G~~Ik~I~~~tga~I~i~~~~~~~~~~~r~v~I~G~~---~~v~~A~~~I~~~i~ 78 (81)
T d1x4ma1 24 GKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDP---YKVQQAKEMVLELIR 78 (81)
T ss_dssp CSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECT---TTHHHHHHHHHHHHC
T ss_pred CCCCchHHHHHHHhCCeEEEccCCCCCCCCceEEEEEeCH---HHHHHHHHHHHHHHH
Confidence 899999984 566677776432 1123333322 356677777776664
No 21
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.18 E-value=17 Score=21.21 Aligned_cols=48 Identities=15% Similarity=0.255 Sum_probs=30.9
Q ss_pred CCCCcccCc--cCceEEEEEeC--Ce---eEEEecCcCCHHHHHHHHHHHHHHHHHHh
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIP--TG---IVIKCHQSRSLSENRKTARELLVAQWDVQ 92 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~p--tg---i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~ 92 (135)
|+||.+++. ..|.++|...+ .+ -.+....+ ..|-..|.+.+.+.|..+
T Consensus 19 Gk~G~~I~~I~~~tga~I~i~~~~~~~~~r~v~I~G~---~~~v~~A~~~I~~~i~~~ 73 (74)
T d1j4wa1 19 GRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGP---PDRAQHAAEIITDLLRSV 73 (74)
T ss_dssp CGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEEC---HHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHcCCEEEeccCCCCCCeeEEEEEeC---HHHHHHHHHHHHHHHHhc
Confidence 889999985 36666665532 11 13344332 357888999998888764
No 22
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.85 E-value=11 Score=21.93 Aligned_cols=45 Identities=13% Similarity=0.226 Sum_probs=26.8
Q ss_pred CCCCcccCc--cCceEEEEEeCC--------eeEEEecCcCCHHHHHHHHHHHHHHHH
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPT--------GIVIKCHQSRSLSENRKTARELLVAQW 89 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~pt--------gi~v~~~~~RSq~~Nk~~A~~rL~~~L 89 (135)
|+||.+++. ..|.|++...+. .=.|....+ ..|-+.|.+.+.++|
T Consensus 17 Gk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~---~~~v~~A~~~I~e~i 71 (71)
T d1j4wa2 17 GKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGT---PQQIDYARQLIEEKI 71 (71)
T ss_dssp CGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECC---HHHHHHHHHHHHHHC
T ss_pred CCCCcChHHHHhhcCcEEEEeecCCCCCCCCeEEEEEEeC---HHHHHHHHHHHHhhC
Confidence 889999883 455566655321 123444443 356777877776653
No 23
>d1foea2 b.55.1.1 (A:1240-1401) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.22 E-value=71 Score=22.28 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=34.5
Q ss_pred cCCCCeEEEEeeccCCCCcccCccCceEEEEEeCCe--------eEEEecCcCCHHHHHHHHHHHHHHHHHHhh
Q psy4479 28 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTG--------IVIKCHQSRSLSENRKTARELLVAQWDVQV 93 (135)
Q Consensus 28 i~~~dl~~~~~RsSGPGGQ~VNKt~s~V~l~h~ptg--------i~v~~~~~RSq~~Nk~~A~~rL~~~L~~~~ 93 (135)
||-+.|++...-.+|- -.+.-.+|+|.-+. ..+.| |...+|...+.-++..|.+..
T Consensus 96 IP~~alQVR~~~~~~~------es~~vwEiiH~kSe~egRpE~vfqlc~----St~E~K~~flK~Ir~ilre~~ 159 (162)
T d1foea2 96 IPTEALQVRALPSADA------EANAVCEIVHVKSESEGRPERVFHLCC----SSPESRKDFLKSVHSILRDKH 159 (162)
T ss_dssp EEGGGEEEECCCCTTT------TSCCEEEEEECCBTGGGBCCEEEEEEE----SSHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeeEeecccccCC------CcceEEEEEeecccccCCcceEEEEec----CCHHHHHHHHHHHHHHHHHHh
Confidence 4555566655433332 23446799996532 33444 457899999998888887643
No 24
>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]}
Probab=23.53 E-value=16 Score=25.88 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=17.4
Q ss_pred CCCCcCCCCeEEEEeeccCCCCccc
Q psy4479 24 KVPKIDEKDIQERFVRGSGPGGQAV 48 (135)
Q Consensus 24 ~~~~i~~~dl~~~~~RsSGPGGQ~V 48 (135)
+++++|...++++ ++||.||.|-
T Consensus 93 DDldl~~G~irlk--~~Gs~gGHNG 115 (193)
T d2ptha_ 93 DELDLPPGVAKFK--LGGGHGGHNG 115 (193)
T ss_dssp EETTSCTTCEEEE--ESCCCTTCHH
T ss_pred cchhccCCCcccc--cCCCcccccc
Confidence 3557778888887 5889999874
No 25
>d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}
Probab=22.54 E-value=81 Score=19.24 Aligned_cols=27 Identities=19% Similarity=0.092 Sum_probs=18.3
Q ss_pred CccCceEEEEEeCCeeEEEecCcCCHHHHHH
Q psy4479 49 AKTNNCVVLTHIPTGIVIKCHQSRSLSENRK 79 (135)
Q Consensus 49 NKt~s~V~l~h~ptgi~v~~~~~RSq~~Nk~ 79 (135)
|-.-|.|+++|| .+......+....++
T Consensus 1 n~~~tev~vrHI----Li~~~~~~~~~~a~~ 27 (108)
T d1m5ya3 1 NISVTEVHARHI----LLKPSPIMTDEQARV 27 (108)
T ss_dssp CCCCEEEEEEEE----EECCCSSSCHHHHHH
T ss_pred CCcccEEEEEEE----EEcCCCCCCHHHHHH
Confidence 566788999997 566666666644333
No 26
>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.94 E-value=15 Score=23.28 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=10.2
Q ss_pred ceEEEEEeCCee
Q psy4479 53 NCVVLTHIPTGI 64 (135)
Q Consensus 53 s~V~l~h~ptgi 64 (135)
|+|.|+++|.+|
T Consensus 2 tKvVvRrLPP~L 13 (91)
T d1uw4a_ 2 SKVVIRRLPPTL 13 (91)
T ss_dssp CEEEEEEECTTC
T ss_pred ceEEEecCCCCC
Confidence 789999999764
No 27
>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]}
Probab=21.63 E-value=17 Score=25.75 Aligned_cols=22 Identities=9% Similarity=0.211 Sum_probs=16.5
Q ss_pred CCCCcCCCCeEEEEeeccCCCCcc
Q psy4479 24 KVPKIDEKDIQERFVRGSGPGGQA 47 (135)
Q Consensus 24 ~~~~i~~~dl~~~~~RsSGPGGQ~ 47 (135)
+++++|...++++ .+||+||.|
T Consensus 93 DDldl~~G~irlk--~~Gs~gGHN 114 (191)
T d1ryba_ 93 DDTSLPNGVLRLQ--KKGGHGRHN 114 (191)
T ss_dssp EETTSCTTCEEEE--SSCCCTTCH
T ss_pred cccccccCceeec--cCCCCCcCc
Confidence 4556777778776 578999976
No 28
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.39 E-value=38 Score=20.88 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=29.7
Q ss_pred CCCCcccCc--cCceEEEEEeCC-------eeEEEecCcCCHHHHHHHHHHHHHHHHHHh
Q psy4479 42 GPGGQAVAK--TNNCVVLTHIPT-------GIVIKCHQSRSLSENRKTARELLVAQWDVQ 92 (135)
Q Consensus 42 GPGGQ~VNK--t~s~V~l~h~pt-------gi~v~~~~~RSq~~Nk~~A~~rL~~~L~~~ 92 (135)
|+||-+++. -.|.|.|...+. .=.|....+ ..|-..|...+.++|.+.
T Consensus 31 Gk~G~~Ik~I~~~tga~I~i~~~~~~~~~~~r~v~I~G~---~~~v~~A~~~I~~~i~e~ 87 (104)
T d1we8a_ 31 GRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGT---QKEVAAAKHLILEKVSED 87 (104)
T ss_dssp TTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEE---HHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHcCCEEEECCCCCCCCCCccEEEEEeC---HHHHHHHHHHHHHHHhCc
Confidence 899999984 456666665321 112222222 457888888888888653
Done!