RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4479
(135 letters)
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId:
10090]}
Length = 112
Score = 60.4 bits (146), Expect = 1e-13
Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 25/86 (29%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHI-------------------------P 61
I + + R SGPGGQ V K N+ +
Sbjct: 16 YIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKA 75
Query: 62 TGIVIKCHQSRSLSENRKTARELLVA 87
+V+ SR N + +
Sbjct: 76 GELVLTSESSRYQFRNLAECLQKIRD 101
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
{Escherichia coli [TaxId: 562]}
Length = 344
Score = 53.2 bits (127), Expect = 7e-10
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 14/114 (12%)
Query: 18 YDLDYSKVPKIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSEN 77
+L +++P ++ D++ R SG GGQ V T++ + +TH+PTGIV++C RS +N
Sbjct: 197 PELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKN 256
Query: 78 RKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDALKKAWKER 131
+ A L A+I + +R E R+ +R
Sbjct: 257 KAKAL--------------SVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDR 296
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 49.0 bits (116), Expect = 2e-08
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 28 IDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVA 87
I +D++ R SG GGQ V KT + V +TH+PTGIV+ C RS +N++TA +L A
Sbjct: 193 IRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRA 252
Query: 88 Q-WDVQVNGEDSLNAQIRRID 107
+ + +Q ++ +Q R+
Sbjct: 253 RLYQLQKEQKEREISQKRKSQ 273
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 45.8 bits (108), Expect = 3e-07
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 27 KIDEKDIQERFVRGSGPGGQAVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLV 86
+I+ D++ R SG GGQ V +T + V +THIPTGIV +C RS +N+ A + +
Sbjct: 230 EINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMK 289
Query: 87 AQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKLDALKKAWKER 131
A+ + +K Q + K D W +
Sbjct: 290 AK------------LYEVEMQKKNAEKQAMEDNKSDI---GWGSQ 319
>d1oaoa_ e.26.1.2 (A:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 673
Score = 26.4 bits (58), Expect = 1.5
Identities = 2/53 (3%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 79 KTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRA--TQEQKKRKLDA-LKKAW 128
+ A ++ + +++ + + + ++ + ++ + + L + +
Sbjct: 621 QIASDVYGGYFIFEMDPQVAARKILDALEYRTWKLGVHKEVAERYETKLCQGY 673
>d1hqia_ d.137.1.1 (A:) Phenol hydroxylase P2 protein {Pseudomonas
sp., CF600 [TaxId: 306]}
Length = 90
Score = 24.6 bits (54), Expect = 2.2
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 47 AVAKTNNCVVLTHIPTGIVIKCHQSRSLSENRKTARELLVAQWDVQ 92
A+ + N V+ H P +I+ + L R+T E L WDVQ
Sbjct: 21 AIIQDNPHAVVQHHPA--MIRIEAEKRLEIRRETVEENLGRAWDVQ 64
>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 309
Score = 25.0 bits (54), Expect = 3.7
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 76 ENRKTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRATQEQKKRKL 121
++R T+ LL ++ ++ + I+R + R + RK+
Sbjct: 256 QDRPTSEVLLKHRFVLRERPPTVIMDLIQRTKDAVRELDNLQYRKM 301
>d1acfa_ d.110.1.1 (A:) Profilin (actin-binding protein)
{Acanthamoeba castellanii [TaxId: 5755]}
Length = 125
Score = 24.0 bits (52), Expect = 5.3
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 33 IQERFVRG-SGPGGQAVAKTNNCVVLTHIPTGI 64
+R + G G G KT+ +++ I
Sbjct: 72 ADDRSIYGKKGSSGVITVKTSKAILVGVYNEKI 104
>d1ypra_ d.110.1.1 (A:) Profilin (actin-binding protein) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 125
Score = 24.0 bits (52), Expect = 5.8
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 35 ERFVRG-SGPGGQAVAKTNNCVVLTHIPTGI 64
+R + G G +T V++ H P +
Sbjct: 74 DRSIYGRHDAEGVVCVRTKQTVIIAHYPPTV 104
>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Carboxydothermus hydrogenoformans [TaxId: 129958]}
Length = 633
Score = 24.4 bits (53), Expect = 5.8
Identities = 5/34 (14%), Positives = 18/34 (52%)
Query: 79 KTARELLVAQWDVQVNGEDSLNAQIRRIDEKRRA 112
+ +++ + V+++ E + + + I+E+R
Sbjct: 595 SSVKDITGGYFIVELDPETAADKLLAAINERRAG 628
>d1d1ja_ d.110.1.1 (A:) Profilin (actin-binding protein) {Human
(Homo sapiens), isoform II [TaxId: 9606]}
Length = 138
Score = 23.8 bits (51), Expect = 7.8
Identities = 7/50 (14%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 17 KYDLDYSKVPKIDEKDIQER--FVRGSGPGGQAVAKTNNCVVLTHIPTGI 64
K + + + + R G AV + +V+ G+
Sbjct: 69 KCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRALVIVMGKEGV 118
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.374
Gapped
Lambda K H
0.267 0.0628 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 489,281
Number of extensions: 20402
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 24
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.5 bits)