BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4482
(133 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis
GN=zfp36l2-A PE=2 SV=1
Length = 363
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 131 RYKTELCRPFEESGACKYGEKCQFAHGFHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 189
Query: 76 CIFIH--EEREISPPDAKHNPRI 96
C FIH EER + P A P++
Sbjct: 190 CHFIHNAEERRQA-PGAGERPKL 211
>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2
PE=1 SV=3
Length = 494
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 55/101 (54%), Gaps = 11/101 (10%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 153 RYKTELCRPFEESGTCKYGEKCQFAHGFHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 211
Query: 76 CIFIH--EEREISPPDAKHNPRIIYVNPEYEACCTRDTQHI 114
C FIH +ER +P + A TRD H+
Sbjct: 212 CHFIHNADERRPAPSGGASG--------DLRAFGTRDALHL 244
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 9 KAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLP 48
+++ +P+YKTE CR +G C Y +C F H+ E P
Sbjct: 184 RSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRP 223
>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis
GN=zfp36l2-B PE=2 SV=1
Length = 364
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 133 RYKTELCRPFEENGACKYGEKCQFAHGFHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 191
Query: 76 CIFIH--EEREISPPDAKHNPRI 96
C FIH EER + P A P++
Sbjct: 192 CHFIHNAEERRQA-PGAGERPKL 213
>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1
PE=1 SV=1
Length = 338
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 114 RYKTELCRPFEENGACKYGDKCQFAHGIHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 172
Query: 76 CIFIHEERE 84
C FIH E
Sbjct: 173 CHFIHNAEE 181
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 9 KAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHH 42
+++ +P+YKTE CR +G C Y +C F H+
Sbjct: 145 RSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHN 178
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 56 YRTQLCRAYHKAGYCSFGARCIF---IHEEREIS 86
Y+T+LCR + + G C +G +C F IHE R ++
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHELRSLT 148
>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus
GN=Zfp36l1 PE=1 SV=1
Length = 338
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 114 RYKTELCRPFEENGACKYGDKCQFAHGIHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 172
Query: 76 CIFIHEERE 84
C FIH E
Sbjct: 173 CHFIHNAEE 181
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 9 KAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHH 42
+++ +P+YKTE CR +G C Y +C F H+
Sbjct: 145 RSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHN 178
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 56 YRTQLCRAYHKAGYCSFGARCIF---IHEEREIS 86
Y+T+LCR + + G C +G +C F IHE R ++
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHELRSLT 148
>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1
PE=1 SV=1
Length = 338
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 114 RYKTELCRPFEENGACKYGDKCQFAHGIHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 172
Query: 76 CIFIHEERE 84
C FIH E
Sbjct: 173 CHFIHNAEE 181
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 9 KAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHH 42
+++ +P+YKTE CR +G C Y +C F H+
Sbjct: 145 RSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHN 178
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 56 YRTQLCRAYHKAGYCSFGARCIF---IHEEREIS 86
Y+T+LCR + + G C +G +C F IHE R ++
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHELRSLT 148
>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis
GN=zfp36l2 PE=2 SV=1
Length = 333
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 101 RYKTELCRPFEESGACKYGEKCQFAHGFHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 159
Query: 76 CIFIH--EEREISPPDAKHNPRI 96
C IH EER + P A P++
Sbjct: 160 CHLIHNAEERRQA-PGAGERPKL 181
>sp|P47973|TTP_RAT Tristetraprolin OS=Rattus norvegicus GN=Zfp36 PE=2 SV=1
Length = 320
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR E G CRY KCQFAH PGEL + HP Y+T+LC ++ G C +G+R
Sbjct: 96 RYKTELCRTYSESGRCRYGAKCQFAHGPGELR-QANRHPKYKTELCHKFYLQGRCPYGSR 154
Query: 76 CIFIHEERE 84
C FIH E
Sbjct: 155 CHFIHNPTE 163
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 56 YRTQLCRAYHKAGYCSFGARCIFIHEEREI 85
Y+T+LCR Y ++G C +GA+C F H E+
Sbjct: 97 YKTELCRTYSESGRCRYGAKCQFAHGPGEL 126
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 15 PRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQ 59
P+YKTE C G C Y +C F H+P E L PH Q
Sbjct: 133 PKYKTELCHKFYLQGRCPYGSRCHFIHNPTEDL-ALPGQPHVLRQ 176
>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2
PE=2 SV=1
Length = 367
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 126 RYKTELCRPFEESGTCKYGEKCQFAHGFHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 184
Query: 76 CIFIHEERE 84
C FIH E
Sbjct: 185 CHFIHNADE 193
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 9 KAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGE 45
+++ +P+YKTE CR +G C Y +C F H+ E
Sbjct: 157 RSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE 193
>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1
Length = 324
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR E G CRY KCQFAH GEL + + HP Y+T+LC ++ G C +G+R
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGELR-QASRHPKYKTELCHKFYLQGRCPYGSR 159
Query: 76 CIFIHEERE 84
C FIH E
Sbjct: 160 CHFIHNPSE 168
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 56 YRTQLCRAYHKAGYCSFGARCIFIHEEREI 85
Y+T+LCR + ++G C +GA+C F H E+
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGEL 131
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 15 PRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQ 59
P+YKTE C G C Y +C F H+P E L HPH Q
Sbjct: 138 PKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDL-AAPGHPHVLRQ 181
>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1
Length = 325
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR E G CRY KCQFAH GEL + + HP Y+T+LC ++ G C +G+R
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGELR-QPSRHPKYKTELCHKFYLQGRCPYGSR 159
Query: 76 CIFIHEERE 84
C FIH E
Sbjct: 160 CHFIHNPSE 168
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 56 YRTQLCRAYHKAGYCSFGARCIFIHEEREI 85
Y+T+LCR + ++G C +GA+C F H E+
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGEL 131
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 15 PRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQ 59
P+YKTE C G C Y +C F H+P E L HPH Q
Sbjct: 138 PKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDL-AAPGHPHVLRQ 181
>sp|P26651|TTP_HUMAN Tristetraprolin OS=Homo sapiens GN=ZFP36 PE=1 SV=1
Length = 326
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR E G CRY KCQFAH GEL + HP Y+T+LC ++ G C +G+R
Sbjct: 103 RYKTELCRTFSESGRCRYGAKCQFAHGLGELR-QANRHPKYKTELCHKFYLQGRCPYGSR 161
Query: 76 CIFIHEERE 84
C FIH E
Sbjct: 162 CHFIHNPSE 170
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 15 PRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAG 68
P+YKTE C G C Y +C F H+P E L H P R + + +G
Sbjct: 140 PKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPPVLRQSISFSGLPSG 193
>sp|P22893|TTP_MOUSE Tristetraprolin OS=Mus musculus GN=Zfp36 PE=1 SV=1
Length = 319
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR E G CRY KCQFAH GEL + HP Y+T+LC ++ G C +G+R
Sbjct: 95 RYKTELCRTYSESGRCRYGAKCQFAHGLGELR-QANRHPKYKTELCHKFYLQGRCPYGSR 153
Query: 76 CIFIHEERE 84
C FIH E
Sbjct: 154 CHFIHNPTE 162
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 56 YRTQLCRAYHKAGYCSFGARCIFIHEEREI 85
Y+T+LCR Y ++G C +GA+C F H E+
Sbjct: 96 YKTELCRTYSESGRCRYGAKCQFAHGLGEL 125
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 15 PRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQ 59
P+YKTE C G C Y +C F H+P E L PH Q
Sbjct: 132 PKYKTELCHKFYLQGRCPYGSRCHFIHNPTEDL-ALPGQPHVLRQ 175
>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2
Length = 436
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL HP Y+T+ CR +H G+C +G R
Sbjct: 135 RYKTELCRPFEEAGECKYGEKCQFAHGSHELR-NVHRHPKYKTEYCRTFHSVGFCPYGPR 193
Query: 76 CIFIHEERE 84
C F+H E
Sbjct: 194 CHFVHNADE 202
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 56 YRTQLCRAYHKAGYCSFGARCIFIHEEREI 85
Y+T+LCR + +AG C +G +C F H E+
Sbjct: 136 YKTELCRPFEEAGECKYGEKCQFAHGSHEL 165
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 15 PRYKTEFCRNIDELGVCRYSLKCQFAHHPGE 45
P+YKTE+CR +G C Y +C F H+ E
Sbjct: 172 PKYKTEYCRTFHSVGFCPYGPRCHFVHNADE 202
>sp|P47979|ZFS1_SCHPO Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=zfs1 PE=1 SV=1
Length = 404
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARC 76
YKTE C+N G CRY KCQFAH EL + HP Y+++ CR++ GYC +G RC
Sbjct: 327 YKTEPCKNWQISGTCRYGSKCQFAHGNQEL-KEPPRHPKYKSERCRSFMMYGYCPYGLRC 385
Query: 77 IFIHEE 82
F+H+E
Sbjct: 386 CFLHDE 391
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 56 YRTQLCRAYHKAGYCSFGARCIFIHEEREISPP 88
Y+T+ C+ + +G C +G++C F H +E+ P
Sbjct: 327 YKTEPCKNWQISGTCRYGSKCQFAHGNQELKEP 359
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 5 SQRTKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAH 41
+Q K +P+YK+E CR+ G C Y L+C F H
Sbjct: 353 NQELKEPPRHPKYKSERCRSFMMYGYCPYGLRCCFLH 389
>sp|Q6L5G1|C3H39_ORYSJ Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa
subsp. japonica GN=Os05g0576300 PE=2 SV=1
Length = 343
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARC 76
+KTE C +E G C Y +CQFAH EL P HP Y+TQ+CR G C +G RC
Sbjct: 269 FKTELCNKWEETGACPYGDQCQFAHGVAELRP-VIRHPRYKTQVCRMVLAGGVCPYGHRC 327
Query: 77 IFIHEEREISPPD 89
F H I+P D
Sbjct: 328 HFRH---SITPAD 337
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 9 KAILLNPRYKTEFCRNIDELGVCRYSLKCQFAH 41
+ ++ +PRYKT+ CR + GVC Y +C F H
Sbjct: 299 RPVIRHPRYKTQVCRMVLAGGVCPYGHRCHFRH 331
>sp|P47976|CTH1_YEAST mRNA decay factor CTH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CTH1 PE=1 SV=2
Length = 325
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHP-HYRTQLCRAYHKAGYCSFGAR 75
YKTE C + G C+Y KCQFAH EL KF +YRT+ C + K GYC +G R
Sbjct: 205 YKTELCESFTIKGYCKYGNKCQFAHGLNEL--KFKKKSNNYRTKPCINWSKLGYCPYGKR 262
Query: 76 CIFIHEE 82
C F H +
Sbjct: 263 CCFKHGD 269
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 47 LPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREI 85
LP+ + Y+T+LC ++ GYC +G +C F H E+
Sbjct: 196 LPQLVNKTLYKTELCESFTIKGYCKYGNKCQFAHGLNEL 234
>sp|P47977|CTH2_YEAST mRNA decay factor CTH2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=TIS11 PE=1 SV=1
Length = 285
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARC 76
YKTE C + G C Y KCQFAH GEL K + ++RT+ C + K GYC +G RC
Sbjct: 170 YKTELCESFTLKGSCPYGSKCQFAHGLGELKVKKSCK-NFRTKPCVNWEKLGYCPYGRRC 228
Query: 77 IFIH 80
F H
Sbjct: 229 CFKH 232
>sp|A2ZVY5|C3H9_ORYSJ Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp.
japonica GN=Os01g0645000 PE=2 SV=1
Length = 333
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARC 76
+KTE C +E G C Y +CQFAH EL P HP Y+T +CR C +G RC
Sbjct: 259 FKTELCNKWEETGDCPYGDQCQFAHGVTELRP-VIRHPRYKTAVCRMVLAGDVCPYGHRC 317
Query: 77 IFIH 80
F H
Sbjct: 318 HFRH 321
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 36 KCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREISP 87
K Q A EL + + ++T+LC + + G C +G +C F H E+ P
Sbjct: 241 KAQPADSGAEL--EVYNQGMFKTELCNKWEETGDCPYGDQCQFAHGVTELRP 290
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 11 ILLNPRYKTEFCRNIDELGVCRYSLKCQFAH 41
++ +PRYKT CR + VC Y +C F H
Sbjct: 291 VIRHPRYKTAVCRMVLAGDVCPYGHRCHFRH 321
>sp|Q9C9N3|C3H14_ARATH Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis
thaliana GN=At1g66810 PE=2 SV=1
Length = 310
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 18 KTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCI 77
KTE C E G C Y CQFAH EL P HP Y+T++CR C +G RC
Sbjct: 234 KTELCNKWQETGACCYGDNCQFAHGIDELRP-VIRHPRYKTEVCRMMVTGAMCPYGHRCH 292
Query: 78 FIH 80
F H
Sbjct: 293 FRH 295
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 11 ILLNPRYKTEFCRNIDELGVCRYSLKCQFAH 41
++ +PRYKTE CR + +C Y +C F H
Sbjct: 265 VIRHPRYKTEVCRMMVTGAMCPYGHRCHFRH 295
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 57 RTQLCRAYHKAGYCSFGARCIFIHEEREISP 87
+T+LC + + G C +G C F H E+ P
Sbjct: 234 KTELCNKWQETGACCYGDNCQFAHGIDELRP 264
>sp|Q9C9F5|C3H15_ARATH Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis
thaliana GN=At1g68200 PE=2 SV=1
Length = 308
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 18 KTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCI 77
KTE C E G C Y CQFAH EL P HP Y+T++CR C +G RC
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELRP-VIRHPRYKTEVCRMVLAGDNCPYGHRCH 282
Query: 78 FIHEERE 84
F H E
Sbjct: 283 FRHSLSE 289
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 57 RTQLCRAYHKAGYCSFGARCIFIHEEREISP 87
+T+LC + + G C +G C F H +E+ P
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELRP 254
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 11 ILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGE 45
++ +PRYKTE CR + C Y +C F H E
Sbjct: 255 VIRHPRYKTEVCRMVLAGDNCPYGHRCHFRHSLSE 289
>sp|Q10MN8|C3H21_ORYSJ Putative zinc finger CCCH domain-containing protein 21 OS=Oryza
sativa subsp. japonica GN=Os03g0301500 PE=4 SV=1
Length = 457
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 18 KTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCI 77
KTE C N E G C Y +C+FAH EL P HP Y+T C+ + A C +G RC
Sbjct: 384 KTELC-NKWERGACPYGARCRFAHGLQELRP-VIRHPRYKTLPCQMFAAASGCPYGHRCH 441
Query: 78 FIH 80
F H
Sbjct: 442 FRH 444
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 6 QRTKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHP 43
Q + ++ +PRYKT C+ C Y +C F H P
Sbjct: 409 QELRPVIRHPRYKTLPCQMFAAASGCPYGHRCHFRHSP 446
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 57 RTQLCRAYHKAGYCSFGARCIFIHEEREISP 87
+T+LC + + G C +GARC F H +E+ P
Sbjct: 384 KTELCNKWER-GACPYGARCRFAHGLQELRP 413
>sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5 OS=Caenorhabditis elegans GN=mex-5 PE=1
SV=1
Length = 468
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 15 PRYKTEFCR-NIDELGVCRYSLKCQFAHHPGEL----LPKFTHHPHYRTQLCRAYHKAG- 68
P YKT C + + C +C+FAH EL P + Y+T+LC+ + + G
Sbjct: 269 PNYKTRLCMMHASGIKPCDMGARCKFAHGLKELRATDAPARYPNNKYKTKLCKNFARGGT 328
Query: 69 -YCSFGARCIFIH 80
+C +G RC F+H
Sbjct: 329 GFCPYGLRCEFVH 341
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 54 PHYRTQLCRAYHKAGY--CSFGARCIFIHEEREISPPDA 90
P+Y+T+LC H +G C GARC F H +E+ DA
Sbjct: 269 PNYKTRLC-MMHASGIKPCDMGARCKFAHGLKELRATDA 306
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 14 NPRYKTEFCRNI--DELGVCRYSLKCQFAH 41
N +YKT+ C+N G C Y L+C+F H
Sbjct: 312 NNKYKTKLCKNFARGGTGFCPYGLRCEFVH 341
>sp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp.
japonica GN=Os01g0258700 PE=2 SV=2
Length = 476
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 7 RTKAILLNP-RYKTEFCRNIDELGVCRYSLKCQFAHHP---GELLPKFTHHPHYRTQL-- 60
R A L P R C + G C++ C++ HHP G +LP ++ + +L
Sbjct: 98 RNAAALDYPERAGQPICEYYMKTGTCKFGTNCKY-HHPKQDGAVLPVMLNNSGFPIRLGE 156
Query: 61 --CRAYHKAGYCSFGARCIFIHEE 82
C Y K G C FG C F H E
Sbjct: 157 KECSYYMKTGQCKFGTTCKFHHPE 180
>sp|Q09436|MEX6_CAEEL Zinc finger protein mex-6 OS=Caenorhabditis elegans GN=mex-6 PE=3
SV=3
Length = 467
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 17 YKTEFCRN-IDELGVCRYSLKCQFAHHPGEL----LPKFTHHPHYRTQLCRAYHK--AGY 69
+KT C + C +C+FAH EL +P + Y+T+LC+ + + +G
Sbjct: 274 FKTRLCMTHAAGINPCALGARCKFAHGLKELRASDIPTRYPNNKYKTKLCKNFARGGSGV 333
Query: 70 CSFGARCIFIH 80
C +G RC F+H
Sbjct: 334 CPYGLRCEFVH 344
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 14 NPRYKTEFCRNI--DELGVCRYSLKCQFAH 41
N +YKT+ C+N GVC Y L+C+F H
Sbjct: 315 NNKYKTKLCKNFARGGSGVCPYGLRCEFVH 344
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 54 PH-YRTQLCRAYHKAGY--CSFGARCIFIHEEREISPPD 89
PH ++T+LC H AG C+ GARC F H +E+ D
Sbjct: 271 PHNFKTRLCMT-HAAGINPCALGARCKFAHGLKELRASD 308
>sp|Q7F8R0|C3H14_ORYSJ Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa
subsp. japonica GN=Os02g0194200 PE=2 SV=1
Length = 300
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 44 GELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREISPP 88
G +P P +T+LC Y+ A C +G +C F H ERE+ P
Sbjct: 88 GNAVPDGPPTPTVKTRLCNKYNTAEGCKWGDKCHFAHGERELGKP 132
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 55 HYRTQLCRAYHKAGYCSFGARCIFIHEEREI 85
+++T+LC + K G C+FG RC F H E E+
Sbjct: 265 NFKTKLCENFTK-GSCTFGDRCHFAHGENEL 294
>sp|Q69XQ3|C3H44_ORYSJ Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa
subsp. japonica GN=Os06g0618100 PE=2 SV=1
Length = 295
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 25 IDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEERE 84
+ EL + R S A +PG +++T+LC ++K G C+FG RC F H E E
Sbjct: 230 VTEL-IVRISGNAPPAKNPGRGSHAGGPGSNFKTKLCENFNK-GSCTFGDRCHFAHGESE 287
Query: 85 ISPPDA 90
+ P A
Sbjct: 288 LRKPPA 293
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 56 YRTQLCRAYHKAGYCSFGARCIFIHEEREISPP 88
+T++C Y+ A C +G++C F H ERE+ P
Sbjct: 99 VKTRMCNKYNTAEGCKWGSKCHFAHGERELGKP 131
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGEL 46
+KT+ C N ++ G C + +C FAH EL
Sbjct: 260 FKTKLCENFNK-GSCTFGDRCHFAHGESEL 288
>sp|Q5Z5Q3|C3H43_ORYSJ Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa
subsp. japonica GN=Os06g0520600 PE=2 SV=1
Length = 711
Score = 36.6 bits (83), Expect = 0.047, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 17/83 (20%)
Query: 22 CRNIDELGVCRYSLKCQFAH------------HPGELLPKFTHHPHYRTQLCRAYHKAGY 69
C + G C++ + C + H P E P+ P C Y K G
Sbjct: 50 CSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQFPRRPGEPD-----CSYYVKFGS 104
Query: 70 CSFGARCIFIHEEREISPPDAKH 92
C FG C F H R PP ++
Sbjct: 105 CKFGMNCRFNHPPRMPVPPQQEY 127
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 33/107 (30%)
Query: 22 CRNIDELGVCRYSLKCQFAHHPGELLPK----------FTHHPHYR-------------- 57
C + G C++ + C+F H P +P HH +
Sbjct: 96 CSYYVKFGSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSKVEQVKLNVLGLP 155
Query: 58 ----TQLCRAYHKAGYCSFGARCIFIHEEREISPPDAKHNPRIIYVN 100
T LC Y G C FG C F H + P + H ++ N
Sbjct: 156 LRPGTGLCSYYMNRGICKFGTNCKFDHPD-----PGSDHEKWVVSSN 197
>sp|Q5PP65|C3H28_ARATH Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis
thaliana GN=At2g35430 PE=2 SV=1
Length = 252
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 54 PHYRTQLCRAYHKAGYCSFGARCIFIHEEREI 85
P+++T++C + GYC FG+ C F H E+
Sbjct: 142 PNWKTRICNKWQTTGYCPFGSHCHFAHGPSEL 173
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 12 LLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGEL 46
L +P +KT C G C + C FAH P EL
Sbjct: 139 LKSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSEL 173
>sp|Q9LQM3|C3H12_ARATH Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis
thaliana GN=At1g32360 PE=2 SV=1
Length = 384
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 55 HYRTQLCRAYHKAGYCSFGARCIFIHEEREI 85
+++T++C + GYC FGA+C F H E+
Sbjct: 260 NWKTRICNKWEITGYCPFGAKCHFAHGAAEL 290
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 11 ILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGEL 46
IL +KT C + G C + KC FAH EL
Sbjct: 255 ILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAEL 290
>sp|Q6CWM0|DUS3_KLULA tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=DUS3 PE=3 SV=1
Length = 665
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 19 TEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQ---LCRAYHKAGYCSFGAR 75
++F N+D C + KC++ H E L K P +T+ +C + G+C G +
Sbjct: 104 SKFVTNVD--ATCSFDTKCRYVHDVREYLSK--KAPEIKTEFFPICPVWQSLGHCPMGYK 159
Query: 76 CIFI 79
C F+
Sbjct: 160 CCFL 163
>sp|Q9ERV1|MKRN2_MOUSE Probable E3 ubiquitin-protein ligase makorin-2 OS=Mus musculus
GN=Mkrn2 PE=2 SV=2
Length = 416
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Query: 29 GVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIH 80
GVCR +C F+H P + +C+ Y K GYC++GARC + H
Sbjct: 14 GVCREGSQCLFSHDLANSKP---------STICKYYQK-GYCAYGARCRYDH 55
>sp|Q7XPK1|C3H31_ORYSJ Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa
subsp. japonica GN=Os04g0665700 PE=2 SV=1
Length = 309
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 57 RTQLCRAYHKAGYCSFGARCIFIHEEREISPP 88
+T++C Y+ A C FG +C F H ERE+ P
Sbjct: 105 KTRMCTKYNTAEGCKFGDKCHFAHGERELGKP 136
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 55 HYRTQLCRAYHKAGYCSFGARCIFIHEERE 84
+Y+T+LC + K G C+FG RC F H E E
Sbjct: 275 NYKTKLCENFVK-GTCTFGDRCHFAHGENE 303
>sp|Q94131|PIE1_CAEEL Pharynx and intestine in excess protein 1 OS=Caenorhabditis elegans
GN=pie-1 PE=1 SV=1
Length = 335
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 53 HPHYRTQLCRAYHKAGYCSFGARCIFIHEEREISPP 88
H Y+T+LC A+ + GYC + C + H + E+ P
Sbjct: 96 HTEYKTRLCDAFRREGYCPYNDNCTYAHGQDELRVP 131
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 41 HHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEER 83
HH P H R Q+C + + G C +G RC FIH E+
Sbjct: 170 HHDENRRPSNNHGSSNRRQICHNFER-GNCRYGPRCRFIHVEQ 211
>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa
subsp. japonica GN=Os12g0405100 PE=2 SV=1
Length = 454
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 22 CRNIDELGVCRYSLKCQFAHHPGELLP----KFTHHPHYRTQL--CRAYHKAGYCSFGAR 75
C G+CR+ + C+F H P L + YR C+ Y K G C FGA
Sbjct: 72 CSYYMRTGLCRFGMTCKFNHPPNRKLAVAAARMNGEYPYRVGQPECQYYLKTGTCKFGAT 131
Query: 76 CIFIH 80
C F H
Sbjct: 132 CKFHH 136
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 61 CRAYHKAGYCSFGARCIFIH-EEREISPPDAKHNPRIIYVNPEYEAC 106
C+ Y K G C FGA C F H +ER + P+ N + + P C
Sbjct: 324 CQFYMKTGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVC 370
>sp|Q9STM4|C3H43_ARATH Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis
thaliana GN=At3g48440 PE=1 SV=1
Length = 448
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 18/90 (20%)
Query: 27 ELGVCRYSLKCQFAHHPGELLPKFTHHPHY-----------RTQLCRAYHKAGYCSFGAR 75
+ G C++ C++ HHP LPK P Y +C Y + G C FG
Sbjct: 357 KTGDCKFKFNCKY-HHPKNRLPKL---PPYALNDKGLPLRPDQNICTYYSRYGICKFGPA 412
Query: 76 CIFIHEEREISPPDAKHNPRIIYVNPEYEA 105
C F H + PP + + + I P+ A
Sbjct: 413 CRFDH---SVQPPYSTESSQAIVEPPQVSA 439
>sp|O17917|RN113_CAEEL RING finger protein 113 homolog OS=Caenorhabditis elegans
GN=rnf-113 PE=2 SV=2
Length = 384
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 60 LCRAYHKAGYCSFGARCIFIHEEREISPPDAKHNPRIIYVNPEYEA 105
+C+ Y + G+C+FG C F+H+ D KH I + EYEA
Sbjct: 180 ICKDYKETGFCTFGDSCKFVHDR-----SDYKHGWEI---DEEYEA 217
>sp|Q84UQ3|C3H56_ORYSJ Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa
subsp. japonica GN=Os08g0159800 PE=2 SV=1
Length = 367
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 55 HYRTQLCRAYHKAGYCSFGARCIFIHEEREI 85
+++T++C + GYC FG++C F H E+
Sbjct: 245 NWKTRICNKWEMTGYCPFGSKCHFAHGAAEL 275
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGEL 46
+KT C + G C + KC FAH EL
Sbjct: 246 WKTRICNKWEMTGYCPFGSKCHFAHGAAEL 275
>sp|O48772|C3H26_ARATH Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis
thaliana GN=ZFN2 PE=2 SV=1
Length = 453
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 22 CRNIDELGVCRYSLKCQFAH-------HPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGA 74
CR G C+Y C+++H P LL C + G+C FGA
Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPKERLLQSPPTLLNPIVLPARPGQPACGNFKAYGFCKFGA 326
Query: 75 RCIFIH 80
C F H
Sbjct: 327 NCKFDH 332
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 52 HHPHYRTQLCRAYHKAGYCSFGARCIFIH-EEREISPPDAKHNPRIIYVNPEYEAC 106
HH CR + G C +G C + H +ER + P NP ++ P AC
Sbjct: 258 HHSFSERAECRFFMNTGTCKYGDDCKYSHPKERLLQSPPTLLNPIVLPARPGQPAC 313
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 27 ELGVCRYSLKCQFAHHP------GELLPKFTHHPHYRTQL-CRAYHKAGYCSFGARCIFI 79
E G C+Y C++ HHP G +L P + + C Y + G C FG C F
Sbjct: 95 ETGACKYGPTCKY-HHPKDRNGAGPVLFNVLGLPMRQGEKPCPYYMQTGLCRFGVACKFH 153
Query: 80 H 80
H
Sbjct: 154 H 154
>sp|Q4P400|CWC24_USTMA Pre-mRNA-splicing factor CWC24 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=CWC24 PE=3 SV=1
Length = 355
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 51 THHPHYRTQLCRAYHKAGYCSFGARCIFIHEERE 84
T Y+ +C+ Y + GYC FG C F+H+ +
Sbjct: 193 TSLIDYQPDVCKDYKETGYCGFGDTCKFLHDRSD 226
>sp|Q9FNG6|C3H51_ARATH Zinc finger CCCH domain-containing protein 51 OS=Arabidopsis
thaliana GN=At5g06420 PE=2 SV=1
Length = 378
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 56 YRTQLCRAYHKAGYCSFGARCIFIHEEREISP 87
Y+ +C+ Y + GYC +G C F+H+ + P
Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFLHDRGDYKP 267
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKF 50
Y+ + C++ E G C Y C+F H G+ P +
Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGW 269
>sp|Q6CSS6|CWC24_KLULA Pre-mRNA-splicing factor CWC24 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=CWC24 PE=3 SV=1
Length = 229
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 55 HYRTQLCRAYHKAGYCSFGARCIFIHEEREIS 86
Y+ +C+ + K GYC +G C F+H +++
Sbjct: 110 DYQPDICKDFQKTGYCGYGDSCKFLHSRDDVA 141
>sp|Q8GX84|C3H1_ARATH Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis
thaliana GN=At1g01350 PE=2 SV=2
Length = 343
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 56 YRTQLCRAYHKAGYCSFGARCIFIHEEREISP 87
Y+ +C+ Y + GYC +G C F+H+ + P
Sbjct: 201 YQPDICKDYKETGYCGYGDSCKFLHDRGDYKP 232
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKF 50
Y+ + C++ E G C Y C+F H G+ P +
Sbjct: 201 YQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGW 234
>sp|Q941Q3|C3H37_ARATH Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis
thaliana GN=HUA1 PE=1 SV=1
Length = 524
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 16/74 (21%)
Query: 22 CRNIDELGVCRYSLKCQFAHHPGELLPKFT----HHPHYRTQL-----------CRAYHK 66
C + G C++ +C+F HHP + L T P+ + L C Y K
Sbjct: 426 CDYYMKTGECKFGERCKF-HHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMK 484
Query: 67 AGYCSFGARCIFIH 80
G C +GA C F H
Sbjct: 485 TGTCKYGATCKFDH 498
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 33/95 (34%)
Query: 31 CRYSLKCQFAHHPGE----------LLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIH 80
C+Y KC+F +HP E LP+ P +C Y K G C FG C F H
Sbjct: 240 CKYGSKCKF-NHPREEAAVSVETQDSLPERPSEP-----MCTFYMKTGKCKFGLSCKF-H 292
Query: 81 EEREI----------------SPPDAKHNPRIIYV 99
++I S PDA +NP + +
Sbjct: 293 HPKDIQLPSSSQDIGSSVGLTSEPDATNNPHVTFT 327
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 35/104 (33%)
Query: 21 FCRNIDELGVCRYSLKCQFAHHPGELL-----------------PKFTHHPH--YRTQL- 60
C + G C++ L C+F HHP ++ P T++PH + L
Sbjct: 273 MCTFYMKTGKCKFGLSCKF-HHPKDIQLPSSSQDIGSSVGLTSEPDATNNPHVTFTPALY 331
Query: 61 --------------CRAYHKAGYCSFGARCIFIHEEREISPPDA 90
C Y K G C +GA C + H ER P A
Sbjct: 332 HNSKGLPVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQA 375
>sp|Q9SWF9|ZFNL_PEA Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum
sativum PE=2 SV=1
Length = 417
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 29 GVCRYSLKCQFAHHPGELLPKFT-----HHPHYRTQL-CRAYHKAGYCSFGARCIFIH 80
G+CR+ C+F H P L T P Q C+ Y K G C FGA C F H
Sbjct: 43 GLCRFGATCRFNHPPNRKLAIATARMKGEFPERLGQPECQYYLKTGTCKFGATCRFHH 100
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 61 CRAYHKAGYCSFGARCIFIH-EEREISPPDAKHNPRIIYVNPEYEAC 106
C+ Y K G C FGA C F H ER+I PD +P + + P C
Sbjct: 284 CQFYMKTGDCKFGAVCRFHHPRERQIPAPDCVLSPIGLPLRPGEPLC 330
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 17/90 (18%)
Query: 9 KAILLNPRYKTEF--------CRNIDELGVCRYSLKCQFAHHP-------GELLPKFTHH 53
K + R K EF C+ + G C++ C+F HHP G + +
Sbjct: 60 KLAIATARMKGEFPERLGQPECQYYLKTGTCKFGATCRF-HHPKDKAGVAGRVALNILGY 118
Query: 54 PHYRTQLCRAYH-KAGYCSFGARCIFIHEE 82
P + RAY+ + G C FG C F H +
Sbjct: 119 PLRPNESERAYYLRTGQCKFGNTCKFHHPQ 148
>sp|Q4VGL6|RC3H1_MOUSE Probable E3 ubiquitin-protein ligase Roquin OS=Mus musculus
GN=Rc3h1 PE=1 SV=1
Length = 1130
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 52 HHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREI 85
H Y+T +CR + G C GA C F H + E+
Sbjct: 410 QHSKYKTYMCRDMKQRGGCPRGASCTFAHSQEEL 443
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGEL 46
+YKT CR++ + G C C FAH EL
Sbjct: 413 KYKTYMCRDMKQRGGCPRGASCTFAHSQEEL 443
>sp|Q5TC82|RC3H1_HUMAN Probable E3 ubiquitin-protein ligase Roquin OS=Homo sapiens
GN=RC3H1 PE=1 SV=1
Length = 1133
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 52 HHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREI 85
H Y+T +CR + G C GA C F H + E+
Sbjct: 410 QHSKYKTYMCRDMKQRGGCPRGASCTFAHSQEEL 443
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGEL 46
+YKT CR++ + G C C FAH EL
Sbjct: 413 KYKTYMCRDMKQRGGCPRGASCTFAHSQEEL 443
>sp|Q6NUC6|RC3H1_XENLA Probable E3 ubiquitin-protein ligase Roquin OS=Xenopus laevis
GN=rc3h1 PE=2 SV=1
Length = 1114
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 52 HHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREI 85
H Y+T +CR + G C GA C F H + E+
Sbjct: 412 QHSKYKTYMCRDMKQRGGCPRGASCTFAHSQEEL 445
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGEL 46
+YKT CR++ + G C C FAH EL
Sbjct: 415 KYKTYMCRDMKQRGGCPRGASCTFAHSQEEL 445
>sp|Q9H000|MKRN2_HUMAN Probable E3 ubiquitin-protein ligase makorin-2 OS=Homo sapiens
GN=MKRN2 PE=2 SV=2
Length = 416
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 29 GVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIH 80
GVCR +C F+H P + +C+ Y K GYC++G RC + H
Sbjct: 14 GVCREGSQCLFSHDLANSKP---------STICKYYQK-GYCAYGTRCRYDH 55
>sp|Q8GVZ8|C3H48_ORYSJ Putative zinc finger CCCH domain-containing protein 48 OS=Oryza
sativa subsp. japonica GN=Os07g0139000 PE=4 SV=1
Length = 496
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 56 YRTQLCRAYHKAGYCSFGARCIFIHEEREI 85
Y+T+LC+ + G C F A C F H E E+
Sbjct: 440 YKTKLCKTFTSGGLCLFAANCRFAHGEVEL 469
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
+YKT+ C+ G+C ++ C+FAH EL K + C + C G
Sbjct: 439 KYKTKLCKTFTSGGLCLFAANCRFAHGEVELGKK---------EPCWYFFSGQTCPRGDT 489
Query: 76 CIFIH 80
C F H
Sbjct: 490 CGFRH 494
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,969,127
Number of Sequences: 539616
Number of extensions: 2099377
Number of successful extensions: 5202
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 4729
Number of HSP's gapped (non-prelim): 421
length of query: 133
length of database: 191,569,459
effective HSP length: 99
effective length of query: 34
effective length of database: 138,147,475
effective search space: 4697014150
effective search space used: 4697014150
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)