Query psy4482
Match_columns 133
No_of_seqs 139 out of 1220
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 18:15:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1677|consensus 99.7 3.6E-17 7.7E-22 132.6 4.7 80 9-88 122-207 (332)
2 COG5063 CTH1 CCCH-type Zn-fing 99.2 1.6E-11 3.4E-16 99.0 5.4 109 10-119 219-345 (351)
3 KOG1595|consensus 99.0 1.9E-10 4.1E-15 98.3 3.7 70 11-89 228-298 (528)
4 PF00642 zf-CCCH: Zinc finger 98.9 1.4E-10 3.1E-15 62.2 0.2 26 17-42 1-26 (27)
5 COG5063 CTH1 CCCH-type Zn-fing 98.8 3.4E-09 7.5E-14 85.6 3.7 74 13-86 268-342 (351)
6 PF00642 zf-CCCH: Zinc finger 98.7 2.6E-09 5.7E-14 57.2 -0.6 27 56-82 1-27 (27)
7 KOG2333|consensus 98.6 9.9E-09 2.1E-13 87.5 1.3 67 18-87 75-145 (614)
8 KOG1040|consensus 98.5 4.5E-08 9.8E-13 80.2 2.4 57 15-82 73-129 (325)
9 smart00356 ZnF_C3H1 zinc finge 98.5 8.3E-08 1.8E-12 50.6 2.3 25 17-42 2-26 (27)
10 KOG1677|consensus 98.3 5.6E-07 1.2E-11 73.0 4.0 68 20-87 87-162 (332)
11 smart00356 ZnF_C3H1 zinc finge 98.2 1.1E-06 2.4E-11 46.2 2.2 26 56-82 2-27 (27)
12 KOG2494|consensus 98.1 1.6E-06 3.4E-11 70.8 2.0 69 12-88 29-99 (331)
13 KOG1595|consensus 97.9 7.7E-06 1.7E-10 70.4 3.9 72 16-92 198-269 (528)
14 KOG1763|consensus 97.9 2.6E-06 5.6E-11 68.9 0.1 75 13-88 86-196 (343)
15 COG5084 YTH1 Cleavage and poly 97.5 0.00029 6.3E-09 57.0 6.2 58 16-82 101-158 (285)
16 COG5252 Uncharacterized conser 97.4 2.9E-05 6.3E-10 61.3 -0.5 75 13-88 79-181 (299)
17 KOG1492|consensus 97.2 0.00025 5.4E-09 56.1 2.3 27 18-44 205-231 (377)
18 KOG1040|consensus 97.1 0.00063 1.4E-08 56.0 4.3 70 17-87 103-187 (325)
19 KOG2185|consensus 96.8 0.00052 1.1E-08 57.9 1.2 28 16-44 137-164 (486)
20 KOG1492|consensus 96.6 0.0013 2.9E-08 52.0 2.0 76 11-88 226-318 (377)
21 PF14608 zf-CCCH_2: Zinc finge 96.5 0.0016 3.5E-08 31.9 1.5 19 21-42 1-19 (19)
22 KOG2185|consensus 96.5 0.00096 2.1E-08 56.3 1.1 26 58-84 140-165 (486)
23 COG5152 Uncharacterized conser 96.5 0.00094 2E-08 51.7 0.7 31 17-47 139-169 (259)
24 COG5152 Uncharacterized conser 96.3 0.0011 2.3E-08 51.4 0.3 29 58-86 141-169 (259)
25 KOG4791|consensus 95.9 0.0037 8.1E-08 53.9 1.5 27 20-47 4-30 (667)
26 PF14608 zf-CCCH_2: Zinc finge 95.9 0.0064 1.4E-07 29.7 1.7 19 60-81 1-19 (19)
27 KOG2494|consensus 95.6 0.0047 1E-07 50.7 1.1 47 59-110 38-85 (331)
28 COG5084 YTH1 Cleavage and poly 95.4 0.02 4.3E-07 46.5 3.9 57 19-85 134-192 (285)
29 KOG1813|consensus 94.6 0.011 2.4E-07 48.1 0.3 32 16-47 183-214 (313)
30 KOG1813|consensus 93.4 0.024 5.1E-07 46.2 0.2 29 57-85 185-213 (313)
31 KOG2202|consensus 93.3 0.031 6.8E-07 44.6 0.7 27 56-83 150-176 (260)
32 KOG1039|consensus 91.7 0.065 1.4E-06 44.6 0.6 25 59-84 9-33 (344)
33 KOG1039|consensus 90.8 0.095 2E-06 43.6 0.7 24 20-44 9-32 (344)
34 KOG1763|consensus 90.4 0.055 1.2E-06 44.2 -0.9 34 55-89 89-122 (343)
35 PF10650 zf-C3H1: Putative zin 88.4 0.3 6.6E-06 25.0 1.3 20 21-41 2-21 (23)
36 KOG4791|consensus 85.0 0.5 1.1E-05 41.2 1.6 55 19-85 32-87 (667)
37 KOG2202|consensus 81.2 0.8 1.7E-05 36.7 1.3 32 11-43 144-175 (260)
38 COG5252 Uncharacterized conser 79.3 0.37 8.1E-06 38.4 -1.1 32 55-87 82-113 (299)
39 KOG3702|consensus 77.8 4.3 9.4E-05 36.6 4.8 22 20-45 545-566 (681)
40 KOG3702|consensus 74.3 6.7 0.00014 35.4 5.0 56 30-89 587-652 (681)
41 KOG2333|consensus 65.8 2.7 5.8E-05 37.0 0.8 22 20-41 115-136 (614)
42 KOG0153|consensus 58.0 4.8 0.0001 33.8 0.9 26 18-44 160-185 (377)
43 KOG0153|consensus 35.2 18 0.00039 30.5 0.9 24 59-83 162-185 (377)
44 PF10283 zf-CCHH: Zinc-finger 34.6 11 0.00023 19.8 -0.3 7 31-37 3-9 (26)
45 PF08098 ATX_III: Anemonia sul 32.2 25 0.00055 18.3 0.8 10 29-38 13-22 (27)
46 KOG2135|consensus 25.0 31 0.00068 30.2 0.7 35 13-47 206-240 (526)
No 1
>KOG1677|consensus
Probab=99.67 E-value=3.6e-17 Score=132.57 Aligned_cols=80 Identities=39% Similarity=0.823 Sum_probs=70.8
Q ss_pred ccccCCCCcccccccccccCCCCCC-CCCCccCCCCCCCCC-----ccCCCCCccccccccccccccCCCCCCCccCCCC
Q psy4482 9 KAILLNPRYKTEFCRNIDELGVCRY-SLKCQFAHHPGELLP-----KFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEE 82 (133)
Q Consensus 9 ~~~~~~~~~Kt~lC~~f~~~G~C~~-G~~C~FaH~~~e~~~-----~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~ 82 (133)
........+||.+|.+|...|.|+| |++|+|+|+.++++. ....+++|||++|..|+.+|.|+||.+|+|+|+.
T Consensus 122 ~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~ 201 (332)
T KOG1677|consen 122 RGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGE 201 (332)
T ss_pred ccccCcccccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCC
Confidence 4466778899999999999999999 999999999999982 3456789999999999999999999999999998
Q ss_pred CCCCCC
Q psy4482 83 REISPP 88 (133)
Q Consensus 83 ~~~~~~ 88 (133)
.+....
T Consensus 202 ~~~~~~ 207 (332)
T KOG1677|consen 202 PEDRAS 207 (332)
T ss_pred cccccc
Confidence 876643
No 2
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=99.21 E-value=1.6e-11 Score=98.99 Aligned_cols=109 Identities=29% Similarity=0.532 Sum_probs=83.7
Q ss_pred cccCCCCccc--ccccccccCCCCCC---CCCCccC---CCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCC
Q psy4482 10 AILLNPRYKT--EFCRNIDELGVCRY---SLKCQFA---HHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHE 81 (133)
Q Consensus 10 ~~~~~~~~Kt--~lC~~f~~~G~C~~---G~~C~Fa---H~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~ 81 (133)
+.++...||| +||.-|...|.|+| |+.|+|+ ||..++.. ..-...|+|++|..|...|+|+||.+|.|+|+
T Consensus 219 ~e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~-k~k~~~frTePcinwe~sGyc~yg~Rc~F~hg 297 (351)
T COG5063 219 QEQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKS-KKKKQNFRTEPCINWEKSGYCPYGLRCCFKHG 297 (351)
T ss_pred hhccchhhcCCHHHhhccCcCCCCccccccccccccccccccccccc-cccccccccCCccchhhcccCccccccccccC
Confidence 5678888999 99999988999999 9999999 99888763 22345799999999999999999999999999
Q ss_pred CCCCCCCCCC----------CCCcccccCCCcCccccCCcchhhhhhh
Q psy4482 82 EREISPPDAK----------HNPRIIYVNPEYEACCTRDTQHIRRYER 119 (133)
Q Consensus 82 ~~~~~~~~~~----------~~P~~~~~~~~~~~~cs~~~~~~~~~e~ 119 (133)
.....-.+.- ..+......|+.+.+|-..|..+..+-.
T Consensus 298 d~~~ie~~~~~~~~y~~~~crt~~~~g~~p~g~~~c~~~dkkn~~~s~ 345 (351)
T COG5063 298 DDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGAVCKSFDKKNLDFSV 345 (351)
T ss_pred ChhhccccccccccccccccccccccCccCCCCchhhccccchhhhhh
Confidence 8875544311 1233345556666777766666655443
No 3
>KOG1595|consensus
Probab=99.02 E-value=1.9e-10 Score=98.27 Aligned_cols=70 Identities=30% Similarity=0.615 Sum_probs=61.5
Q ss_pred ccCCCCcccccccccccCCCCCCCCCCccCCCCCCCCCccCCCC-CccccccccccccccCCCCCCCccCCCCCCCCCCC
Q psy4482 11 ILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHP-HYRTQLCRAYHKAGYCSFGARCIFIHEEREISPPD 89 (133)
Q Consensus 11 ~~~~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~-~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~~~ 89 (133)
--+.-.|..+.|+.| ++|.|..||.|.|+|++-|.. .|| .|+|+.|+.- |+|+. ..|.|||.+++++...
T Consensus 228 DPRkyhYs~tpCPef-rkG~C~rGD~CEyaHgvfEcw----LHPa~YRT~~CkDg---~~C~R-rvCfFAH~~eqLR~l~ 298 (528)
T KOG1595|consen 228 DPRKYHYSSTPCPEF-RKGSCERGDSCEYAHGVFECW----LHPARYRTRKCKDG---GYCPR-RVCFFAHSPEQLRPLP 298 (528)
T ss_pred CcccccccCccCccc-ccCCCCCCCccccccceehhh----cCHHHhccccccCC---CCCcc-ceEeeecChHHhcccC
Confidence 335567889999999 679999999999999999987 565 6999999966 89998 9999999999998776
No 4
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.95 E-value=1.4e-10 Score=62.20 Aligned_cols=26 Identities=46% Similarity=0.971 Sum_probs=19.5
Q ss_pred cccccccccccCCCCCCCCCCccCCC
Q psy4482 17 YKTEFCRNIDELGVCRYSLKCQFAHH 42 (133)
Q Consensus 17 ~Kt~lC~~f~~~G~C~~G~~C~FaH~ 42 (133)
||+++|++|+..|.|++|++|+|+|+
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred CccccChhhccCCccCCCCCcCccCC
Confidence 57888888877788888888888887
No 5
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=98.81 E-value=3.4e-09 Score=85.59 Aligned_cols=74 Identities=23% Similarity=0.462 Sum_probs=61.9
Q ss_pred CCCCcccccccccccCCCCCCCCCCccCCCCCCCCCcc-CCCCCccccccccccccccCCCCCCCccCCCCCCCC
Q psy4482 13 LNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKF-THHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREIS 86 (133)
Q Consensus 13 ~~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~-~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~ 86 (133)
..+.|+|+.|..|...|.|+||.+|.|+|+..+..... .....|+...|+.+...|.|++|.+|.|.|+...+.
T Consensus 268 k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~~~~y~~~~crt~~~~g~~p~g~~~c~~~dkkn~~ 342 (351)
T COG5063 268 KKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGAVCKSFDKKNLD 342 (351)
T ss_pred cccccccCCccchhhcccCccccccccccCChhhccccccccccccccccccccccCccCCCCchhhccccchhh
Confidence 45679999999999899999999999999987765322 122368889999999999999999999999876544
No 6
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.67 E-value=2.6e-09 Score=57.20 Aligned_cols=27 Identities=48% Similarity=1.186 Sum_probs=21.8
Q ss_pred ccccccccccccccCCCCCCCccCCCC
Q psy4482 56 YRTQLCRAYHKAGYCSFGARCIFIHEE 82 (133)
Q Consensus 56 ~kt~~C~~f~~~G~C~~G~~C~F~H~~ 82 (133)
+++.+|++|...|.|++|++|+|+|+.
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 578999999999999999999999974
No 7
>KOG2333|consensus
Probab=98.63 E-value=9.9e-09 Score=87.54 Aligned_cols=67 Identities=21% Similarity=0.573 Sum_probs=54.3
Q ss_pred ccccccccccC--CCCCCCCCCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccC--CCCCCCCC
Q psy4482 18 KTEFCRNIDEL--GVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFI--HEEREISP 87 (133)
Q Consensus 18 Kt~lC~~f~~~--G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~--H~~~~~~~ 87 (133)
+..||+..... ..|.|||+|+|.|+++.+.. ..+......|..|...|.|+||..|||+ |-..+..+
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLa---tK~~Dig~~Cp~f~s~G~Cp~G~~CRFl~aHld~~g~~ 145 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLA---TKAPDIGPSCPVFESLGFCPYGFKCRFLGAHLDIEGNN 145 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHh---ccCcccCCccceeeccccCCccceeehhhcccCccccc
Confidence 57899998655 47999999999999988763 4455566789999999999999999998 55554443
No 8
>KOG1040|consensus
Probab=98.52 E-value=4.5e-08 Score=80.20 Aligned_cols=57 Identities=23% Similarity=0.625 Sum_probs=45.3
Q ss_pred CCcccccccccccCCCCCCCCCCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCC
Q psy4482 15 PRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEE 82 (133)
Q Consensus 15 ~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~ 82 (133)
...++.+|++| ..|.|..||.|.|+|.. ++. +.+.|.+|...|.|..|..|.|.|+.
T Consensus 73 ~~~~~~vcK~~-l~glC~kgD~C~Flhe~-~~~---------k~rec~ff~~~g~c~~~~~c~y~h~d 129 (325)
T KOG1040|consen 73 DSRGKVVCKHW-LRGLCKKGDQCEFLHEY-DLT---------KMRECKFFSLFGECTNGKDCPYLHGD 129 (325)
T ss_pred ccCCceeehhh-hhhhhhccCcCcchhhh-hhc---------ccccccccccccccccccCCcccCCC
Confidence 47889999999 46999999999999987 443 33567777777777777777777777
No 9
>smart00356 ZnF_C3H1 zinc finger.
Probab=98.50 E-value=8.3e-08 Score=50.55 Aligned_cols=25 Identities=48% Similarity=1.072 Sum_probs=19.6
Q ss_pred cccccccccccCCCCCCCCCCccCCC
Q psy4482 17 YKTEFCRNIDELGVCRYSLKCQFAHH 42 (133)
Q Consensus 17 ~Kt~lC~~f~~~G~C~~G~~C~FaH~ 42 (133)
+|+.+|++| ..|.|.+|++|+|+|+
T Consensus 2 ~k~~~C~~~-~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 2 YKTELCKFF-KRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCCcCcCc-cCCCCCCCCCcCCCCc
Confidence 567788888 6788888888888886
No 10
>KOG1677|consensus
Probab=98.31 E-value=5.6e-07 Score=72.99 Aligned_cols=68 Identities=32% Similarity=0.727 Sum_probs=58.0
Q ss_pred ccccccccCCCCCCCCCCccCCCCCCCCCccC-------CCCCccccccccccccccCCC-CCCCccCCCCCCCCC
Q psy4482 20 EFCRNIDELGVCRYSLKCQFAHHPGELLPKFT-------HHPHYRTQLCRAYHKAGYCSF-GARCIFIHEEREISP 87 (133)
Q Consensus 20 ~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~-------~~~~~kt~~C~~f~~~G~C~~-G~~C~F~H~~~~~~~ 87 (133)
..|.++...+.|.++..|.|.|...+++.... ....++|.+|..|...|.|+| |+.|+|+|+.++++.
T Consensus 87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~ 162 (332)
T KOG1677|consen 87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRL 162 (332)
T ss_pred cccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCcccccc
Confidence 78999988899999999999999755543321 224689999999999999999 999999999999984
No 11
>smart00356 ZnF_C3H1 zinc finger.
Probab=98.19 E-value=1.1e-06 Score=46.16 Aligned_cols=26 Identities=50% Similarity=1.267 Sum_probs=22.8
Q ss_pred ccccccccccccccCCCCCCCccCCCC
Q psy4482 56 YRTQLCRAYHKAGYCSFGARCIFIHEE 82 (133)
Q Consensus 56 ~kt~~C~~f~~~G~C~~G~~C~F~H~~ 82 (133)
+++.+|++| ..|.|.+|++|+|+|+.
T Consensus 2 ~k~~~C~~~-~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 2 YKTELCKFF-KRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence 467899999 67999999999999974
No 12
>KOG2494|consensus
Probab=98.08 E-value=1.6e-06 Score=70.78 Aligned_cols=69 Identities=26% Similarity=0.556 Sum_probs=51.9
Q ss_pred cCCCCccc-ccccccccCCCCCCCCC-CccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCCCCCCCC
Q psy4482 12 LLNPRYKT-EFCRNIDELGVCRYSLK-CQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREISPP 88 (133)
Q Consensus 12 ~~~~~~Kt-~lC~~f~~~G~C~~G~~-C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~~ 88 (133)
|...++-+ ++|+.|+ .|.|.+||+ |+|+|...... ..+-+-..|.+|.+ |.|.. ++|+|+|....++..
T Consensus 29 ~kd~~wl~~eVCReF~-rn~C~R~d~~CkfaHP~~~~~-----V~~g~v~aC~Ds~k-grCsR-~nCkylHpp~hlkdq 99 (331)
T KOG2494|consen 29 VKDTKWLTLEVCREFL-RNTCSRGDRECKFAHPPKNCQ-----VSNGRVIACFDSQK-GRCSR-ENCKYLHPPQHLKDQ 99 (331)
T ss_pred ccccchhHHHHHHHHH-hccccCCCccccccCCCCCCC-----ccCCeEEEEecccc-CccCc-ccceecCCChhhhhh
Confidence 44555544 8999995 689999999 99999876443 12223457999985 99985 679999999877654
No 13
>KOG1595|consensus
Probab=97.95 E-value=7.7e-06 Score=70.41 Aligned_cols=72 Identities=24% Similarity=0.402 Sum_probs=55.7
Q ss_pred CcccccccccccCCCCCCCCCCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCCCCCCCCCCCC
Q psy4482 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREISPPDAKH 92 (133)
Q Consensus 16 ~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~~~~~~ 92 (133)
.||++.|.. +.|.-+-.|-|+|.-+..+....+.-.|..++|+.|.+ |.|..|+.|.|+|+.-+..--|...
T Consensus 198 ~fKir~C~R----~~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPefrk-G~C~rGD~CEyaHgvfEcwLHPa~Y 269 (528)
T KOG1595|consen 198 SFKIRRCSR----PRSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEFRK-GSCERGDSCEYAHGVFECWLHPARY 269 (528)
T ss_pred eeeecccCC----ccCCCcccCCccCCCcccccCCcccccccCccCccccc-CCCCCCCccccccceehhhcCHHHh
Confidence 488999974 36888999999995555553333344578899999985 9999999999999999877665443
No 14
>KOG1763|consensus
Probab=97.90 E-value=2.6e-06 Score=68.86 Aligned_cols=75 Identities=25% Similarity=0.458 Sum_probs=53.2
Q ss_pred CCCCcccccccccccCCCCCCCCCCccCCCCCCCCCccC-------C------------------CCCccc-cccccccc
Q psy4482 13 LNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFT-------H------------------HPHYRT-QLCRAYHK 66 (133)
Q Consensus 13 ~~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~-------~------------------~~~~kt-~~C~~f~~ 66 (133)
.-..-|+.+|-+| ..|.|..|+.|.|+|+....+.... + .+...| .+|++|..
T Consensus 86 ~gvDPKSvvCafF-k~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLe 164 (343)
T KOG1763|consen 86 KGVDPKSVVCAFF-KQGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLE 164 (343)
T ss_pred cCCCchHHHHHHH-hccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHH
Confidence 3456799999999 7899999999999999865543210 0 011111 47998863
Q ss_pred ------ccc---CCCCC-CCccCCCCCCCCCC
Q psy4482 67 ------AGY---CSFGA-RCIFIHEEREISPP 88 (133)
Q Consensus 67 ------~G~---C~~G~-~C~F~H~~~~~~~~ 88 (133)
+|+ |++|. .|.|.|...+.-..
T Consensus 165 AvE~~kYGWfW~CPnGg~~C~YrHaLP~GyVL 196 (343)
T KOG1763|consen 165 AVENGKYGWFWECPNGGDKCIYRHALPEGYVL 196 (343)
T ss_pred HHhcCCccceeECCCCCCeeeeeecCCcchhh
Confidence 443 99996 89999998775544
No 15
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=97.49 E-value=0.00029 Score=57.00 Aligned_cols=58 Identities=24% Similarity=0.563 Sum_probs=43.4
Q ss_pred CcccccccccccCCCCCCCCCCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCC
Q psy4482 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEE 82 (133)
Q Consensus 16 ~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~ 82 (133)
.+...+|++| ..|.|+-|+.|.|+|+.+-... -+..|++|...|.|..|..|.+.|..
T Consensus 101 ~~s~V~c~~~-~~g~c~s~~~c~~lh~~d~~~s--------~~~~c~~Fs~~G~cs~g~~c~~~h~d 158 (285)
T COG5084 101 LSSSVVCKFF-LRGLCKSGFSCEFLHEYDLRSS--------QGPPCRSFSLKGSCSSGPSCGYSHID 158 (285)
T ss_pred ccCCcccchh-ccccCcCCCccccccCCCcccc--------cCCCcccccccceeccCCCCCccccC
Confidence 5788999999 5799999999999999875541 13456666566666666666666665
No 16
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=97.40 E-value=2.9e-05 Score=61.29 Aligned_cols=75 Identities=24% Similarity=0.404 Sum_probs=53.0
Q ss_pred CCCCcccccccccccCCCCCCCCCCccCCCCCCCCCccC------------CCC----Cc--cccccccccc------cc
Q psy4482 13 LNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFT------------HHP----HY--RTQLCRAYHK------AG 68 (133)
Q Consensus 13 ~~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~------------~~~----~~--kt~~C~~f~~------~G 68 (133)
.-..-|+.+|-.| ..+.|..|+.|.|+|+.++.+.... ..+ .+ -..+|++|.. +|
T Consensus 79 agvdpK~~vcalF-~~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYg 157 (299)
T COG5252 79 AGVDPKTVVCALF-LNKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYG 157 (299)
T ss_pred cccCchhHHHHHh-ccCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCcc
Confidence 3456799999999 6799999999999999777653210 011 11 1257997762 33
Q ss_pred ---cCCCC-CCCccCCCCCCCCCC
Q psy4482 69 ---YCSFG-ARCIFIHEEREISPP 88 (133)
Q Consensus 69 ---~C~~G-~~C~F~H~~~~~~~~ 88 (133)
.|++| .+|.|.|...+.-..
T Consensus 158 w~W~CPng~~~C~y~H~Lp~GyVL 181 (299)
T COG5252 158 WGWTCPNGNMRCSYIHKLPDGYVL 181 (299)
T ss_pred ceeeCCCCCceeeeeeccCcccee
Confidence 49999 699999998874433
No 17
>KOG1492|consensus
Probab=97.16 E-value=0.00025 Score=56.11 Aligned_cols=27 Identities=30% Similarity=0.828 Sum_probs=22.3
Q ss_pred ccccccccccCCCCCCCCCCccCCCCC
Q psy4482 18 KTEFCRNIDELGVCRYSLKCQFAHHPG 44 (133)
Q Consensus 18 Kt~lC~~f~~~G~C~~G~~C~FaH~~~ 44 (133)
...-|++|..+|.|-.|..|+|.|.+.
T Consensus 205 savycryynangicgkgaacrfvhept 231 (377)
T KOG1492|consen 205 SAVYCRYYNANGICGKGAACRFVHEPT 231 (377)
T ss_pred ceeEEEEecCCCcccCCceeeeecccc
Confidence 346799998889999999999999764
No 18
>KOG1040|consensus
Probab=97.11 E-value=0.00063 Score=56.00 Aligned_cols=70 Identities=27% Similarity=0.576 Sum_probs=41.6
Q ss_pred cccccccccccCCCCCCCCCCccCCCCCCCCCcc--------------CCCCCccccccccccccccCCCCCC-CccCCC
Q psy4482 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKF--------------THHPHYRTQLCRAYHKAGYCSFGAR-CIFIHE 81 (133)
Q Consensus 17 ~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~--------------~~~~~~kt~~C~~f~~~G~C~~G~~-C~F~H~ 81 (133)
.|...|.+|...|.|..|..|.|.|+..+..... ......+..+|..|.. |.|+-|.. |.+.|.
T Consensus 103 ~k~rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~~~g~c~~g~~c~~~h~~~~~c~~y~~-gfC~~g~q~c~~~hp 181 (325)
T KOG1040|consen 103 TKMRECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWYKEGFCRGGPSCKKRHERKVLCPPYNA-GFCPKGPQRCDMLHP 181 (325)
T ss_pred cccccccccccccccccccCCcccCCChhhhhhccchhhhccCCCcchhhhhhhcccCCCchhh-hhccCCCCcccccCC
Confidence 3455799998889999999999999984322100 0001122245555543 55655555 665555
Q ss_pred CCCCCC
Q psy4482 82 EREISP 87 (133)
Q Consensus 82 ~~~~~~ 87 (133)
...+..
T Consensus 182 ~~~~~~ 187 (325)
T KOG1040|consen 182 EFQQPP 187 (325)
T ss_pred CCCCCh
Confidence 555444
No 19
>KOG2185|consensus
Probab=96.78 E-value=0.00052 Score=57.87 Aligned_cols=28 Identities=25% Similarity=0.585 Sum_probs=23.9
Q ss_pred CcccccccccccCCCCCCCCCCccCCCCC
Q psy4482 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPG 44 (133)
Q Consensus 16 ~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~ 44 (133)
....++|+|| ..|.|+||++|+|+||..
T Consensus 137 h~sMkpC~ff-Leg~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 137 HESMKPCKFF-LEGRCRFGENCRFSHGLD 164 (486)
T ss_pred chhhccchHh-hccccccCcccccccCcc
Confidence 3455899999 579999999999999874
No 20
>KOG1492|consensus
Probab=96.56 E-value=0.0013 Score=52.04 Aligned_cols=76 Identities=21% Similarity=0.453 Sum_probs=50.6
Q ss_pred ccCCCCcccccccccccCCCCCCCCCCccCCCCCCCCCcc--------CCCC-------C--ccccccccccccccCCCC
Q psy4482 11 ILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKF--------THHP-------H--YRTQLCRAYHKAGYCSFG 73 (133)
Q Consensus 11 ~~~~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~--------~~~~-------~--~kt~~C~~f~~~G~C~~G 73 (133)
.|...-.| .+|+.| .+|+|...+.|..+|..+.-+-+. ...| . ....+|..|.+.|.|-.|
T Consensus 226 fvheptrk-ticpkf-lngrcnkaedcnlsheldprripacryfllgkcnnpncryvhihysenapicfefakygfcelg 303 (377)
T KOG1492|consen 226 FVHEPTRK-TICPKF-LNGRCNKAEDCNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIHYSENAPICFEFAKYGFCELG 303 (377)
T ss_pred eecccccc-ccChHH-hcCccCchhcCCcccccCccccchhhhhhhccCCCCCceEEEEeecCCCceeeeehhcceeccc
Confidence 44444444 479999 579999999999999877654221 0111 1 123578888888888888
Q ss_pred CCCccCCCCCCCCCC
Q psy4482 74 ARCIFIHEEREISPP 88 (133)
Q Consensus 74 ~~C~F~H~~~~~~~~ 88 (133)
..|.--|-..-....
T Consensus 304 tscknqhilqctdya 318 (377)
T KOG1492|consen 304 TSCKNQHILQCTDYA 318 (377)
T ss_pred cccccceeeeecchh
Confidence 888877766544433
No 21
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=96.53 E-value=0.0016 Score=31.88 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=13.7
Q ss_pred cccccccCCCCCCCCCCccCCC
Q psy4482 21 FCRNIDELGVCRYSLKCQFAHH 42 (133)
Q Consensus 21 lC~~f~~~G~C~~G~~C~FaH~ 42 (133)
+|++|. + |++|++|.|+|.
T Consensus 1 ~Ck~~~--~-C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGP--N-CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcC--C-CCCCCcCccCCc
Confidence 477662 2 888888888884
No 22
>KOG2185|consensus
Probab=96.53 E-value=0.00096 Score=56.31 Aligned_cols=26 Identities=31% Similarity=0.746 Sum_probs=22.5
Q ss_pred ccccccccccccCCCCCCCccCCCCCC
Q psy4482 58 TQLCRAYHKAGYCSFGARCIFIHEERE 84 (133)
Q Consensus 58 t~~C~~f~~~G~C~~G~~C~F~H~~~~ 84 (133)
..+|++|. .|.|+||.+|||+|+...
T Consensus 140 MkpC~ffL-eg~CRF~enCRfSHG~~V 165 (486)
T KOG2185|consen 140 MKPCKFFL-EGRCRFGENCRFSHGLDV 165 (486)
T ss_pred hccchHhh-ccccccCcccccccCccc
Confidence 46899887 599999999999999764
No 23
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.47 E-value=0.00094 Score=51.75 Aligned_cols=31 Identities=26% Similarity=0.738 Sum_probs=26.6
Q ss_pred cccccccccccCCCCCCCCCCccCCCCCCCC
Q psy4482 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELL 47 (133)
Q Consensus 17 ~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~ 47 (133)
+...+|+.|..+|.|-|||.|.|.|+.++..
T Consensus 139 ~qpdVCKdyk~TGYCGYGDsCKflH~R~D~K 169 (259)
T COG5152 139 TQPDVCKDYKETGYCGYGDSCKFLHDRSDFK 169 (259)
T ss_pred cCcccccchhhcccccCCchhhhhhhhhhhh
Confidence 5567899998889999999999999988654
No 24
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.34 E-value=0.0011 Score=51.44 Aligned_cols=29 Identities=31% Similarity=1.106 Sum_probs=25.6
Q ss_pred ccccccccccccCCCCCCCccCCCCCCCC
Q psy4482 58 TQLCRAYHKAGYCSFGARCIFIHEEREIS 86 (133)
Q Consensus 58 t~~C~~f~~~G~C~~G~~C~F~H~~~~~~ 86 (133)
..+|+.|..+|+|-||+.|.|.|..++..
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~R~D~K 169 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHDRSDFK 169 (259)
T ss_pred cccccchhhcccccCCchhhhhhhhhhhh
Confidence 36799999999999999999999988443
No 25
>KOG4791|consensus
Probab=95.88 E-value=0.0037 Score=53.92 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=20.8
Q ss_pred ccccccccCCCCCCCCCCccCCCCCCCC
Q psy4482 20 EFCRNIDELGVCRYSLKCQFAHHPGELL 47 (133)
Q Consensus 20 ~lC~~f~~~G~C~~G~~C~FaH~~~e~~ 47 (133)
..|.+| ....|++++.|.|.|...-+.
T Consensus 4 ~dcyff-~ys~cKk~d~c~~rh~E~al~ 30 (667)
T KOG4791|consen 4 EDCYFF-FYSTCKKGDSCPFRHCEAALG 30 (667)
T ss_pred ccchhh-hhhhhhccCcCcchhhHHHhc
Confidence 357777 467899999999999876654
No 26
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.86 E-value=0.0064 Score=29.73 Aligned_cols=19 Identities=32% Similarity=0.688 Sum_probs=15.4
Q ss_pred ccccccccccCCCCCCCccCCC
Q psy4482 60 LCRAYHKAGYCSFGARCIFIHE 81 (133)
Q Consensus 60 ~C~~f~~~G~C~~G~~C~F~H~ 81 (133)
+|++|. .|++|+.|.|+|.
T Consensus 1 ~Ck~~~---~C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGP---NCTNGDNCPFSHP 19 (19)
T ss_pred CCcCcC---CCCCCCcCccCCc
Confidence 488554 4999999999995
No 27
>KOG2494|consensus
Probab=95.63 E-value=0.0047 Score=50.73 Aligned_cols=47 Identities=30% Similarity=0.663 Sum_probs=35.7
Q ss_pred cccccccccccCCCCCC-CccCCCCCCCCCCCCCCCCcccccCCCcCccccCC
Q psy4482 59 QLCRAYHKAGYCSFGAR-CIFIHEEREISPPDAKHNPRIIYVNPEYEACCTRD 110 (133)
Q Consensus 59 ~~C~~f~~~G~C~~G~~-C~F~H~~~~~~~~~~~~~P~~~~~~~~~~~~cs~~ 110 (133)
.+|+.|+. |.|..|++ |+|+|...... ++.-..+.+..+.+.-|+++
T Consensus 38 eVCReF~r-n~C~R~d~~CkfaHP~~~~~----V~~g~v~aC~Ds~kgrCsR~ 85 (331)
T KOG2494|consen 38 EVCREFLR-NTCSRGDRECKFAHPPKNCQ----VSNGRVIACFDSQKGRCSRE 85 (331)
T ss_pred HHHHHHHh-ccccCCCccccccCCCCCCC----ccCCeEEEEeccccCccCcc
Confidence 68999985 99999999 99999988433 33344556666667778776
No 28
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=95.39 E-value=0.02 Score=46.46 Aligned_cols=57 Identities=26% Similarity=0.658 Sum_probs=46.0
Q ss_pred cccccccccCCCCCCCCCCccCCCCCCCCCccCCCCCccccccccccc--cccCCCCCCCccCCCCCCC
Q psy4482 19 TEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHK--AGYCSFGARCIFIHEEREI 85 (133)
Q Consensus 19 t~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~--~G~C~~G~~C~F~H~~~~~ 85 (133)
...|++|-..|.|..|..|.+.|....-. ...|..|.. .+.|++|..|+|.|.....
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~----------~~~~~~~~~~~~~f~p~g~~c~~~H~~~~~ 192 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHIDPDSF----------AGNCDQYSGATYGFCPLGASCKFSHTLKRV 192 (285)
T ss_pred CCCcccccccceeccCCCCCccccCcccc----------cccccccCcccccccCCCCccccccccccc
Confidence 56799997789999999999999863222 256776653 6899999999999999955
No 29
>KOG1813|consensus
Probab=94.55 E-value=0.011 Score=48.12 Aligned_cols=32 Identities=28% Similarity=0.801 Sum_probs=27.7
Q ss_pred CcccccccccccCCCCCCCCCCccCCCCCCCC
Q psy4482 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELL 47 (133)
Q Consensus 16 ~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~ 47 (133)
.|...+|+.|-.+|.|-||+.|.|.|+...+.
T Consensus 183 d~qpDicKdykeTgycg~gdSckFlh~r~DyK 214 (313)
T KOG1813|consen 183 DYQPDICKDYKETGYCGYGDSCKFLHDRSDYK 214 (313)
T ss_pred ecCchhhhhhHhhCcccccchhhhhhhhhhcc
Confidence 35567999998899999999999999988763
No 30
>KOG1813|consensus
Probab=93.41 E-value=0.024 Score=46.22 Aligned_cols=29 Identities=31% Similarity=1.114 Sum_probs=25.9
Q ss_pred cccccccccccccCCCCCCCccCCCCCCC
Q psy4482 57 RTQLCRAYHKAGYCSFGARCIFIHEEREI 85 (133)
Q Consensus 57 kt~~C~~f~~~G~C~~G~~C~F~H~~~~~ 85 (133)
-..+|+.|..+|+|-||+.|.|.|...+.
T Consensus 185 qpDicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 185 QPDICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred CchhhhhhHhhCcccccchhhhhhhhhhc
Confidence 34689999999999999999999998855
No 31
>KOG2202|consensus
Probab=93.29 E-value=0.031 Score=44.59 Aligned_cols=27 Identities=33% Similarity=0.891 Sum_probs=22.4
Q ss_pred ccccccccccccccCCCCCCCccCCCCC
Q psy4482 56 YRTQLCRAYHKAGYCSFGARCIFIHEER 83 (133)
Q Consensus 56 ~kt~~C~~f~~~G~C~~G~~C~F~H~~~ 83 (133)
++...|..|.. +.|.+|..|-|.|...
T Consensus 150 ~rea~C~~~e~-~~C~rG~~CnFmH~k~ 176 (260)
T KOG2202|consen 150 FREAICGQFER-TECSRGGACNFMHVKR 176 (260)
T ss_pred hhhhhhccccc-ccCCCCCcCcchhhhh
Confidence 34567998875 6999999999999874
No 32
>KOG1039|consensus
Probab=91.72 E-value=0.065 Score=44.59 Aligned_cols=25 Identities=32% Similarity=0.877 Sum_probs=21.0
Q ss_pred cccccccccccCCCCCCCccCCCCCC
Q psy4482 59 QLCRAYHKAGYCSFGARCIFIHEERE 84 (133)
Q Consensus 59 ~~C~~f~~~G~C~~G~~C~F~H~~~~ 84 (133)
.+|++|. .|+|.||..|||.|+...
T Consensus 9 tic~~~~-~g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TICKYYQ-KGNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhhhhcc-cccccccceeeeeccCch
Confidence 6899776 599999999999998884
No 33
>KOG1039|consensus
Probab=90.76 E-value=0.095 Score=43.63 Aligned_cols=24 Identities=21% Similarity=0.664 Sum_probs=22.2
Q ss_pred ccccccccCCCCCCCCCCccCCCCC
Q psy4482 20 EFCRNIDELGVCRYSLKCQFAHHPG 44 (133)
Q Consensus 20 ~lC~~f~~~G~C~~G~~C~FaH~~~ 44 (133)
.+|++|+ .|.|.||+.|+|.|...
T Consensus 9 tic~~~~-~g~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYYQ-KGNCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhhhcc-cccccccceeeeeccCc
Confidence 7899995 69999999999999887
No 34
>KOG1763|consensus
Probab=90.42 E-value=0.055 Score=44.20 Aligned_cols=34 Identities=21% Similarity=0.549 Sum_probs=28.1
Q ss_pred CccccccccccccccCCCCCCCccCCCCCCCCCCC
Q psy4482 55 HYRTQLCRAYHKAGYCSFGARCIFIHEEREISPPD 89 (133)
Q Consensus 55 ~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~~~ 89 (133)
-.++.+|-+|. .|.|.-|..|.|+|+....+...
T Consensus 89 DPKSvvCafFk-~g~C~KG~kCKFsHdl~~~~k~e 122 (343)
T KOG1763|consen 89 DPKSVVCAFFK-QGTCTKGDKCKFSHDLAVERKKE 122 (343)
T ss_pred CchHHHHHHHh-ccCCCCCCcccccchHHHhhhcc
Confidence 35788999887 59999999999999998766543
No 35
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=88.41 E-value=0.3 Score=25.04 Aligned_cols=20 Identities=35% Similarity=0.775 Sum_probs=10.1
Q ss_pred cccccccCCCCCCCCCCccCC
Q psy4482 21 FCRNIDELGVCRYSLKCQFAH 41 (133)
Q Consensus 21 lC~~f~~~G~C~~G~~C~FaH 41 (133)
+|.+-..+|.|. -+.|.|.|
T Consensus 2 lC~yEl~Gg~Cn-d~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCN-DPDCEFQH 21 (23)
T ss_pred CCccccCCCeeC-CCCCCccc
Confidence 455554444554 34555555
No 36
>KOG4791|consensus
Probab=85.05 E-value=0.5 Score=41.20 Aligned_cols=55 Identities=20% Similarity=0.429 Sum_probs=39.0
Q ss_pred cccccccccCCCCCCCCCCccCCCCCCCCCccCCCCCcccccccccccccc-CCCCCCCccCCCCCCC
Q psy4482 19 TEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGY-CSFGARCIFIHEEREI 85 (133)
Q Consensus 19 t~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~-C~~G~~C~F~H~~~~~ 85 (133)
...|.+|+..-.|+. -|.|-|+.-.... ...+|. |+..+. |. .++|-|.|....+
T Consensus 32 ~t~C~~w~~~~~C~k--~C~YRHSe~~~kr--------~e~~CY-we~~p~gC~-k~~CgfRH~~pPL 87 (667)
T KOG4791|consen 32 ETVCTLWQEGRCCRK--VCRYRHSEIDKKR--------SEIPCY-WENQPTGCQ-KLNCGFRHNRPPL 87 (667)
T ss_pred cchhhhhhhcCcccc--cccchhhHHhhhc--------Ccccce-eecCCCccC-CCccccccCCCch
Confidence 357999977656765 8999998755441 236898 554565 96 6999999965433
No 37
>KOG2202|consensus
Probab=81.20 E-value=0.8 Score=36.69 Aligned_cols=32 Identities=16% Similarity=0.432 Sum_probs=26.5
Q ss_pred ccCCCCcccccccccccCCCCCCCCCCccCCCC
Q psy4482 11 ILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHP 43 (133)
Q Consensus 11 ~~~~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~ 43 (133)
+++-..++..+|..|. .+.|.+|..|.|.|-.
T Consensus 144 ~~pvT~~rea~C~~~e-~~~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 144 LSPVTDFREAICGQFE-RTECSRGGACNFMHVK 175 (260)
T ss_pred ecCcCchhhhhhcccc-cccCCCCCcCcchhhh
Confidence 4555678888999995 5689999999999965
No 38
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=79.32 E-value=0.37 Score=38.43 Aligned_cols=32 Identities=25% Similarity=0.552 Sum_probs=26.5
Q ss_pred CccccccccccccccCCCCCCCccCCCCCCCCC
Q psy4482 55 HYRTQLCRAYHKAGYCSFGARCIFIHEEREISP 87 (133)
Q Consensus 55 ~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~ 87 (133)
..++.+|-.|.. +.|.-|..|.|+|+.++.+.
T Consensus 82 dpK~~vcalF~~-~~c~kg~~ckF~h~~ee~r~ 113 (299)
T COG5252 82 DPKTVVCALFLN-KTCAKGDACKFAHGKEEARK 113 (299)
T ss_pred CchhHHHHHhcc-CccccCchhhhhcchHHHhh
Confidence 357899999985 89999999999999665443
No 39
>KOG3702|consensus
Probab=77.85 E-value=4.3 Score=36.56 Aligned_cols=22 Identities=32% Similarity=0.696 Sum_probs=15.0
Q ss_pred ccccccccCCCCCCCCCCccCCCCCC
Q psy4482 20 EFCRNIDELGVCRYSLKCQFAHHPGE 45 (133)
Q Consensus 20 ~lC~~f~~~G~C~~G~~C~FaH~~~e 45 (133)
..|++|.. |. +..|.|+|....
T Consensus 545 ~~Cky~~~---Ct-~a~Ce~~HPtaa 566 (681)
T KOG3702|consen 545 TRCKYGPA---CT-SAECEFAHPTAA 566 (681)
T ss_pred ccccCCCc---CC-chhhhhcCCcch
Confidence 35666633 66 778889998754
No 40
>KOG3702|consensus
Probab=74.26 E-value=6.7 Score=35.41 Aligned_cols=56 Identities=21% Similarity=0.449 Sum_probs=32.6
Q ss_pred CCCCCC-----CCccCCCCCCCCCccCCC----C-CccccccccccccccCCCCCCCccCCCCCCCCCCC
Q psy4482 30 VCRYSL-----KCQFAHHPGELLPKFTHH----P-HYRTQLCRAYHKAGYCSFGARCIFIHEEREISPPD 89 (133)
Q Consensus 30 ~C~~G~-----~C~FaH~~~e~~~~~~~~----~-~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~~~ 89 (133)
.|.+|. .|.|+|+........... + ...+.+|+++ +.|+ ..-|+|.|...-..+.-
T Consensus 587 ~Ck~~~kCtasDC~~sH~~~~~pvq~t~ip~~~~~~ti~~~CrY~---pnCr-nm~C~F~HPk~cRf~~~ 652 (681)
T KOG3702|consen 587 GCKFGKKCTASDCNYSHAGRRIPVQPTRIPPPFPGGTIRGLCRYR---PNCR-NMQCKFYHPKTCRFNTN 652 (681)
T ss_pred ccccccccccccCcccccCCCCCCccccCCCCCCCCCccccceec---cCcC-CccccccCCcccccccc
Confidence 366664 477888876541101111 1 2345678844 5786 47899999877655443
No 41
>KOG2333|consensus
Probab=65.78 E-value=2.7 Score=36.96 Aligned_cols=22 Identities=36% Similarity=0.925 Sum_probs=19.2
Q ss_pred ccccccccCCCCCCCCCCccCC
Q psy4482 20 EFCRNIDELGVCRYSLKCQFAH 41 (133)
Q Consensus 20 ~lC~~f~~~G~C~~G~~C~FaH 41 (133)
.-|..|...|.|+||-+|+|+-
T Consensus 115 ~~Cp~f~s~G~Cp~G~~CRFl~ 136 (614)
T KOG2333|consen 115 PSCPVFESLGFCPYGFKCRFLG 136 (614)
T ss_pred CccceeeccccCCccceeehhh
Confidence 4599998889999999999973
No 42
>KOG0153|consensus
Probab=57.99 E-value=4.8 Score=33.75 Aligned_cols=26 Identities=19% Similarity=0.589 Sum_probs=22.0
Q ss_pred ccccccccccCCCCCCCCCCccCCCCC
Q psy4482 18 KTEFCRNIDELGVCRYSLKCQFAHHPG 44 (133)
Q Consensus 18 Kt~lC~~f~~~G~C~~G~~C~FaH~~~ 44 (133)
.-.+|.+|+ .|.|++|+.|-|.|...
T Consensus 160 ~p~Icsf~v-~geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 160 RPHICSFFV-KGECKRGAECPYRHEKP 185 (377)
T ss_pred CCcccccee-eccccccccccccccCC
Confidence 346999995 58999999999999775
No 43
>KOG0153|consensus
Probab=35.17 E-value=18 Score=30.45 Aligned_cols=24 Identities=33% Similarity=0.818 Sum_probs=21.0
Q ss_pred cccccccccccCCCCCCCccCCCCC
Q psy4482 59 QLCRAYHKAGYCSFGARCIFIHEER 83 (133)
Q Consensus 59 ~~C~~f~~~G~C~~G~~C~F~H~~~ 83 (133)
-+|.+|. .|.|+.|..|.|.|...
T Consensus 162 ~Icsf~v-~geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 162 HICSFFV-KGECKRGAECPYRHEKP 185 (377)
T ss_pred cccccee-eccccccccccccccCC
Confidence 5799776 48999999999999887
No 44
>PF10283 zf-CCHH: Zinc-finger (CX5CX6HX5H) motif; InterPro: IPR019406 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type Znf motif that in humans is part of the APLF (aprataxin- and PNK-like) forkead association domain-containing protein []. The Znf is highly conserved both in primary sequence and in the spacing between the putative zinc coordinating residues, and is configured CX5CX6HX5H. Many of the proteins containing this Znf are involved in DNA strand break repair and/or contain domains implicated in DNA metabolism. This Znf motif appears to be specialised for the non-covalent binding of poly ADP-ribose; Aprataxin also appears to covalently bind poly ADP-ribose, but not through its Znf motif [].; PDB: 2KQC_A 2KUO_A 2KQE_A 2KQD_A 2KQB_A.
Probab=34.60 E-value=11 Score=19.82 Aligned_cols=7 Identities=57% Similarity=1.706 Sum_probs=3.3
Q ss_pred CCCCCCC
Q psy4482 31 CRYSLKC 37 (133)
Q Consensus 31 C~~G~~C 37 (133)
|+||.+|
T Consensus 3 C~YG~~C 9 (26)
T PF10283_consen 3 CKYGAKC 9 (26)
T ss_dssp -TTGGG-
T ss_pred CCcchhh
Confidence 6666666
No 45
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family. ATX III is a neurotoxin that is produced by sea anemone; it adopts a compact structure containing four reverse turns and two other chain reversals, but no regular alpha-helix or beta-sheet. A hydrophobic patch found on the surface of the peptide may constitute part of the sodium channel binding surface [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 1ANS_A.
Probab=32.20 E-value=25 Score=18.35 Aligned_cols=10 Identities=30% Similarity=0.913 Sum_probs=4.7
Q ss_pred CCCCCCCCCc
Q psy4482 29 GVCRYSLKCQ 38 (133)
Q Consensus 29 G~C~~G~~C~ 38 (133)
|.|++|.+|.
T Consensus 13 ~gC~WGQ~~~ 22 (27)
T PF08098_consen 13 GGCPWGQNCY 22 (27)
T ss_dssp TT-SSS-SS-
T ss_pred cCCccccccc
Confidence 4488887663
No 46
>KOG2135|consensus
Probab=24.97 E-value=31 Score=30.22 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=28.2
Q ss_pred CCCCcccccccccccCCCCCCCCCCccCCCCCCCC
Q psy4482 13 LNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELL 47 (133)
Q Consensus 13 ~~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~ 47 (133)
...++.-..|++|...|.|..|+.|.+.|+...+.
T Consensus 206 ~ks~~s~~r~k~fee~g~~~r~el~p~~hg~~~vv 240 (526)
T KOG2135|consen 206 EKSRNSENRRKFFEEFGVLERGELCPTHHGCVPVV 240 (526)
T ss_pred ccccccHHhhhhhHhhceeeeccccccccccceeE
Confidence 34455667899998899999999999999886544
Done!