Query psy4482
Match_columns 133
No_of_seqs 139 out of 1220
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 18:15:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4482.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4482hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.9 2E-22 6.8E-27 131.4 3.8 75 9-84 2-76 (77)
2 2cqe_A KIAA1064 protein; CCCH 99.5 6.8E-15 2.3E-19 100.5 4.2 53 15-83 9-61 (98)
3 2d9n_A Cleavage and polyadenyl 99.5 3.8E-14 1.3E-18 92.6 4.4 61 14-86 5-65 (77)
4 2rhk_C Cleavage and polyadenyl 99.4 1.7E-13 5.8E-18 88.6 2.2 61 14-86 11-71 (72)
5 3d2q_A Muscleblind-like protei 99.3 1.5E-12 5.2E-17 83.5 3.4 63 17-85 4-67 (70)
6 2e5s_A Otthump00000018578; ZF- 99.1 5.4E-12 1.9E-16 86.0 0.7 65 15-85 16-81 (98)
7 3d2n_A Muscleblind-like protei 98.9 4.3E-10 1.5E-14 74.5 3.3 62 16-85 6-68 (83)
8 2d9m_A Zinc finger CCCH-type d 98.9 5.8E-11 2E-15 75.9 -2.8 49 14-63 15-63 (69)
9 2rpp_A Muscleblind-like protei 98.7 3.9E-09 1.3E-13 70.7 2.8 60 17-84 15-75 (89)
10 1m9o_A Tristetraproline; Cys3H 98.4 9.8E-08 3.4E-12 61.3 3.0 37 52-88 6-42 (77)
11 2d9m_A Zinc finger CCCH-type d 98.4 2E-08 6.8E-13 64.1 -1.7 33 54-87 16-48 (69)
12 2cqe_A KIAA1064 protein; CCCH 97.8 1.5E-05 5E-10 53.9 3.4 25 56-81 11-35 (98)
13 2d9n_A Cleavage and polyadenyl 97.7 2.3E-05 8E-10 50.5 2.8 38 18-66 37-74 (77)
14 2fc6_A Nuclear, target of EGR1 97.5 2E-05 6.8E-10 46.9 0.5 29 56-84 18-46 (50)
15 2fc6_A Nuclear, target of EGR1 97.4 3.4E-05 1.2E-09 45.9 1.1 29 16-44 17-45 (50)
16 2rhk_C Cleavage and polyadenyl 97.4 3.5E-05 1.2E-09 49.2 1.2 28 56-84 14-41 (72)
17 3u9g_A Zinc finger CCCH-type a 96.9 0.00045 1.5E-08 53.1 2.6 65 18-83 88-179 (229)
18 3d2q_A Muscleblind-like protei 96.8 0.00021 7.1E-09 45.2 0.1 32 14-47 37-68 (70)
19 2e5s_A Otthump00000018578; ZF- 96.6 0.0005 1.7E-08 46.3 1.0 31 55-86 17-48 (98)
20 3d2n_A Muscleblind-like protei 96.5 0.0014 4.8E-08 42.8 2.4 28 57-85 8-36 (83)
21 3u9g_A Zinc finger CCCH-type a 96.5 0.0017 5.9E-08 49.9 3.3 52 12-84 144-199 (229)
22 2rpp_A Muscleblind-like protei 95.9 0.0031 1.1E-07 41.8 1.9 28 57-85 16-44 (89)
23 2lhn_A Nuclear polyadenylated 93.5 0.0068 2.3E-07 39.4 0.0 21 19-43 9-29 (80)
24 3u1l_A PRE-mRNA-splicing facto 93.8 0.016 5.3E-07 44.7 0.9 26 19-45 70-95 (240)
25 3u1l_A PRE-mRNA-splicing facto 90.3 0.055 1.9E-06 41.6 0.1 25 59-84 71-95 (240)
26 3v33_A Ribonuclease ZC3H12A; r 73.5 0.69 2.4E-05 35.3 0.0 27 57-86 191-217 (223)
27 2kuo_A Aprataxin and PNK-like 70.8 2.9 9.9E-05 27.5 2.5 19 68-86 62-89 (91)
28 3v33_A Ribonuclease ZC3H12A; r 70.1 0.91 3.1E-05 34.6 0.0 25 18-45 191-215 (223)
29 2kqb_A Aprataxin and PNK-like 63.2 5.9 0.0002 25.9 2.9 10 68-77 57-66 (89)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.85 E-value=2e-22 Score=131.45 Aligned_cols=75 Identities=48% Similarity=0.986 Sum_probs=35.9
Q ss_pred ccccCCCCcccccccccccCCCCCCCCCCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCCCC
Q psy4482 9 KAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEERE 84 (133)
Q Consensus 9 ~~~~~~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~ 84 (133)
+..+++.+|||+||++|+..|.|++|++|+|+|+.++++. ...++.+++.+|+.|...|.|++|++|+|+|+..+
T Consensus 2 ~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~-~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 2 SHMTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQ-ANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp --CCCSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGG-TC---------------------------------
T ss_pred CCCCCCCCccchhCHHhhhCCCcCCCCCccCCCCChhhcc-ccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 3467889999999999987899999999999999999884 23456789999999988999999999999999765
No 2
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.52 E-value=6.8e-15 Score=100.47 Aligned_cols=53 Identities=30% Similarity=0.695 Sum_probs=47.7
Q ss_pred CCcccccccccccCCCCCCCCCCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCCC
Q psy4482 15 PRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEER 83 (133)
Q Consensus 15 ~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~ 83 (133)
..+|+.+|++| ..|.|.+|++|.|+|+ +.+|++|...|.|++|++|+|+|...
T Consensus 9 ~~~k~~lC~~f-~~G~C~~G~~C~f~H~---------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 9 LPKKRELCKFY-ITGFCARAENCPYMHG---------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp CSCCCSBCTTT-TTTCCSCSTTCSSBSS---------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCCCCccCccc-ccCcCCCCCCCCCCCC---------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 45899999999 5899999999999998 36899997789999999999999865
No 3
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.8e-14 Score=92.64 Aligned_cols=61 Identities=30% Similarity=0.549 Sum_probs=51.1
Q ss_pred CCCcccccccccccCCCCCCCCCCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCCCCCC
Q psy4482 14 NPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREIS 86 (133)
Q Consensus 14 ~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~ 86 (133)
...+|+++|++|+ .|.|.+|++|.|+|+....+ +.+|++|...|.|. |++|+|.|......
T Consensus 5 ~~~~k~~~C~~fl-~G~C~~G~~C~fsH~~~~~~----------~~~C~~f~~~G~C~-~~~C~f~H~~~~~~ 65 (77)
T 2d9n_A 5 SSGEKTVVCKHWL-RGLCKKGDQCEFLHEYDMTK----------MPECYFYSKFGECS-NKECPFLHIDPESK 65 (77)
T ss_dssp CSCCTTSBCHHHH-TTCCSCTTSSSSBCSCCTTT----------SCBCHHHHHTCCCC-CSSCSSBCCCTTSS
T ss_pred CCCCcceeCHhHc-cCcCCCCCCCCCccccccCc----------CCCCcccCCCCccC-CCCeeccCCCcccc
Confidence 4558899999996 59999999999999976532 46899888769999 99999999986543
No 4
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.36 E-value=1.7e-13 Score=88.64 Aligned_cols=61 Identities=30% Similarity=0.541 Sum_probs=49.8
Q ss_pred CCCcccccccccccCCCCCCCCCCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCCCCCC
Q psy4482 14 NPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREIS 86 (133)
Q Consensus 14 ~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~ 86 (133)
....++++|++|+ .|.|.+|++|.|+|+.... ++.+|++|...|.|.+ ++|+|.|.....+
T Consensus 11 ~~~~k~~vCk~fl-~G~C~~G~~C~fsH~~~~~----------~~~~C~~f~~~G~C~~-~~C~y~H~~p~~k 71 (72)
T 2rhk_C 11 MSGEKTVVCKHWL-RGLCKKGDQCEFLHEYDMT----------KMSECYFYSKFGECSN-KECPFLHIDPESK 71 (72)
T ss_dssp SSCCCCSBCHHHH-TTCCCCGGGSSSBCSCCTT----------SCCBCHHHHHHSCCSB-TTCCSBCCCCC--
T ss_pred CCCCcCeeCHHHh-cCCCCCCCCCCCccccccc----------cCCcccccCCCCCCCC-CCeeccCCCcccc
Confidence 3457889999996 5999999999999997543 3578998886699999 9999999876543
No 5
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.29 E-value=1.5e-12 Score=83.55 Aligned_cols=63 Identities=27% Similarity=0.614 Sum_probs=51.1
Q ss_pred cccccccccccCCCCCCCC-CCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCCCCC
Q psy4482 17 YKTEFCRNIDELGVCRYSL-KCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREI 85 (133)
Q Consensus 17 ~Kt~lC~~f~~~G~C~~G~-~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~ 85 (133)
.|..+|++| ..|.|..|+ .|.|+|+.++... .....++.+|.+|.. |.|.+| .|+|.|....+
T Consensus 4 ~k~~vC~~f-~~G~C~rg~~~C~f~H~~~~~~~---~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~L 67 (70)
T 3d2q_A 4 DRLEVCREY-QRGNCNRGENDCRFAHPADSTMI---DTNDNTVTVCMDYIK-GRCSRE-KCKYFHPPAHL 67 (70)
T ss_dssp CEEEBCHHH-HTTCCSSCTTTCSSBCCCTTSCC---BTTTTEEEBCHHHHT-TCCCCT-TCCSBCCCHHH
T ss_pred ccchhCHHH-hcCCCCCCCCCCCCccCcccccc---cccCCcceeccccCc-CCCCCC-CcCeeCCHHHH
Confidence 366899999 579999999 5999999877542 223457789999885 999999 99999987654
No 6
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=5.4e-12 Score=86.05 Aligned_cols=65 Identities=26% Similarity=0.580 Sum_probs=51.9
Q ss_pred CCcccccccccccCCCCCCCC-CCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCCCCC
Q psy4482 15 PRYKTEFCRNIDELGVCRYSL-KCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREI 85 (133)
Q Consensus 15 ~~~Kt~lC~~f~~~G~C~~G~-~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~ 85 (133)
...|.++|++|+ .|.|.+|+ .|.|+|+.+++.. .....+..+|.+|.. |.|.+| .|+|.|....+
T Consensus 16 ~~~k~~VCr~Fl-rG~C~rgd~~C~FsH~~~~~~~---~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~l 81 (98)
T 2e5s_A 16 RTDKLEVCREFQ-RGNCARGETDCRFAHPADSTMI---DTSDNTVTVCMDYIK-GRCMRE-KCKYFHPPAHL 81 (98)
T ss_dssp CSSEEEBCSHHH-HTCCSSHHHHCSSBCCSSCCSC---CTTTCEEEBCHHHHH-TCCCCT-TCCSBCCCHHH
T ss_pred ChhhhhhhHHHh-cCcCCCCCCCCCCcCCchhccc---cccCCccccchhhcc-CCCCCC-CcCccCChHHH
Confidence 446778999996 49999999 8999999877642 223456789998875 999999 99999987543
No 7
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.94 E-value=4.3e-10 Score=74.48 Aligned_cols=62 Identities=27% Similarity=0.544 Sum_probs=49.1
Q ss_pred CcccccccccccCCCCCCCC-CCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCCCCC
Q psy4482 16 RYKTEFCRNIDELGVCRYSL-KCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREI 85 (133)
Q Consensus 16 ~~Kt~lC~~f~~~G~C~~G~-~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~ 85 (133)
..+..+|+.|+. |.|..|| .|+|+|....+.. ...+..+|.+|.. |.|..+ .|+|.|....+
T Consensus 6 ~~~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~-----~~~~~~vC~dflk-G~C~r~-~C~y~H~~~~l 68 (83)
T 3d2n_A 6 WLTLEVCREFQR-GTCSRPDTECKFAHPSKSCQV-----ENGRVIACFDSLK-GRCSRE-NCKYLHPPPHL 68 (83)
T ss_dssp GGEEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCE-----ETTEEECCHHHHT-TCCCCS-SCSSCCCCHHH
T ss_pred cccchhcHHHhc-CCCCCCCCCCCCcCCCccccc-----cCCceeehhHhhh-ccccCC-CcceeCChHHH
Confidence 356789999965 9999997 9999999875431 1234578998875 999998 99999987643
No 8
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=5.8e-11 Score=75.94 Aligned_cols=49 Identities=24% Similarity=0.341 Sum_probs=35.3
Q ss_pred CCCcccccccccccCCCCCCCCCCccCCCCCCCCCccCCCCCcccccccc
Q psy4482 14 NPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRA 63 (133)
Q Consensus 14 ~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~ 63 (133)
....|++||++| ..|.|+||++|.|||+.+||+.-..+....++++++.
T Consensus 15 ~P~~k~~LC~~~-~~G~C~~G~~C~FAHG~~ELr~~~~R~~~~k~k~~~A 63 (69)
T 2d9m_A 15 FPTGYFSICDRY-MNGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKA 63 (69)
T ss_dssp CCCSCCSBCHHH-HHSCCSSCSSCSSBSSHHHHHHHHHHHHHHTTTCCSC
T ss_pred CCCCCcccCccc-CcCCCCCCCccCCcCCHHHHhhHHHHHHHHHHHHHHH
Confidence 344577999999 6789999999999999999984222222344555553
No 9
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.74 E-value=3.9e-09 Score=70.72 Aligned_cols=60 Identities=30% Similarity=0.588 Sum_probs=47.6
Q ss_pred cccccccccccCCCCCCCC-CCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCCCC
Q psy4482 17 YKTEFCRNIDELGVCRYSL-KCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEERE 84 (133)
Q Consensus 17 ~Kt~lC~~f~~~G~C~~G~-~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~ 84 (133)
.+..+|+.|+. |.|..|+ .|+|+|......- ..-+..+|.+|. .|.|..+ .|+|.|....
T Consensus 15 ~~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v-----~~~~~~vC~dfl-kG~C~r~-~Cky~H~~~h 75 (89)
T 2rpp_A 15 LTLEVCRQFQR-GTCSRSDEECKFAHPPKSCQV-----ENGRVIACFDSL-KGRCSRE-NCKYLHPPTH 75 (89)
T ss_dssp SEECBCHHHHH-TCCCCCTTTSSSBCCCSSSCC-----BTTBEEBCHHHH-HTCCCCT-TCCSBCCCHH
T ss_pred chhhhchHHhc-CCCCCCCCCCCCcCCCccccc-----cCCceeeehhhh-hCcCCCC-CcceecCHHH
Confidence 45679999965 9999998 9999999876431 122467899997 5999987 9999998753
No 10
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.44 E-value=9.8e-08 Score=61.29 Aligned_cols=37 Identities=38% Similarity=0.921 Sum_probs=32.5
Q ss_pred CCCCccccccccccccccCCCCCCCccCCCCCCCCCC
Q psy4482 52 HHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREISPP 88 (133)
Q Consensus 52 ~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~~ 88 (133)
..+.++|.+|++|...|.|++|++|+|+|+..+++..
T Consensus 6 ~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~ 42 (77)
T 1m9o_A 6 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA 42 (77)
T ss_dssp CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred CCCCccchhCHHhhhCCCcCCCCCccCCCCChhhccc
Confidence 3467899999999878999999999999999988754
No 11
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=2e-08 Score=64.14 Aligned_cols=33 Identities=30% Similarity=0.653 Sum_probs=28.6
Q ss_pred CCccccccccccccccCCCCCCCccCCCCCCCCC
Q psy4482 54 PHYRTQLCRAYHKAGYCSFGARCIFIHEEREISP 87 (133)
Q Consensus 54 ~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~~ 87 (133)
|..++.+|..| ..|.|+||++|.|||+.++++.
T Consensus 16 P~~k~~LC~~~-~~G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 16 PTGYFSICDRY-MNGTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp CCSCCSBCHHH-HHSCCSSCSSCSSBSSHHHHHH
T ss_pred CCCCcccCccc-CcCCCCCCCccCCcCCHHHHhh
Confidence 44567999999 5799999999999999998875
No 12
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=97.79 E-value=1.5e-05 Score=53.90 Aligned_cols=25 Identities=28% Similarity=0.903 Sum_probs=22.8
Q ss_pred ccccccccccccccCCCCCCCccCCC
Q psy4482 56 YRTQLCRAYHKAGYCSFGARCIFIHE 81 (133)
Q Consensus 56 ~kt~~C~~f~~~G~C~~G~~C~F~H~ 81 (133)
+++.+|++|. .|.|.+|+.|+|+|+
T Consensus 11 ~k~~lC~~f~-~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 11 KKRELCKFYI-TGFCARAENCPYMHG 35 (98)
T ss_dssp CCCSBCTTTT-TTCCSCSTTCSSBSS
T ss_pred CCCccCcccc-cCcCCCCCCCCCCCC
Confidence 4789999885 799999999999999
No 13
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=2.3e-05 Score=50.49 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=30.9
Q ss_pred ccccccccccCCCCCCCCCCccCCCCCCCCCccCCCCCccccccccccc
Q psy4482 18 KTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHK 66 (133)
Q Consensus 18 Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~ 66 (133)
++.+|++|+..|.|. |++|.|+|...+. ++.+|..|..
T Consensus 37 ~~~~C~~f~~~G~C~-~~~C~f~H~~~~~----------~~~~C~~f~~ 74 (77)
T 2d9n_A 37 KMPECYFYSKFGECS-NKECPFLHIDPES----------KIKDCPWSGP 74 (77)
T ss_dssp TSCBCHHHHHTCCCC-CSSCSSBCCCTTS----------SCSSSSCCTT
T ss_pred cCCCCcccCCCCccC-CCCeeccCCCccc----------cCCCCccccc
Confidence 567899997669999 9999999987544 3578998874
No 14
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=97.49 E-value=2e-05 Score=46.93 Aligned_cols=29 Identities=24% Similarity=0.668 Sum_probs=24.5
Q ss_pred ccccccccccccccCCCCCCCccCCCCCC
Q psy4482 56 YRTQLCRAYHKAGYCSFGARCIFIHEERE 84 (133)
Q Consensus 56 ~kt~~C~~f~~~G~C~~G~~C~F~H~~~~ 84 (133)
..+.+|..|...|+|++|..|.|.|+..-
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISG 46 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCC
Confidence 46788999999999999999999998753
No 15
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=97.44 E-value=3.4e-05 Score=45.90 Aligned_cols=29 Identities=24% Similarity=0.515 Sum_probs=26.6
Q ss_pred CcccccccccccCCCCCCCCCCccCCCCC
Q psy4482 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPG 44 (133)
Q Consensus 16 ~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~ 44 (133)
..++.+|..|...|.|++|.+|.|.|+++
T Consensus 17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 17 PHPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred ccccchhhhccccccCCCCCCCCccccCC
Confidence 36899999998889999999999999976
No 16
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=97.43 E-value=3.5e-05 Score=49.21 Aligned_cols=28 Identities=32% Similarity=0.797 Sum_probs=24.3
Q ss_pred ccccccccccccccCCCCCCCccCCCCCC
Q psy4482 56 YRTQLCRAYHKAGYCSFGARCIFIHEERE 84 (133)
Q Consensus 56 ~kt~~C~~f~~~G~C~~G~~C~F~H~~~~ 84 (133)
.++.+|++|.. |.|.+|+.|.|+|+...
T Consensus 14 ~k~~vCk~fl~-G~C~~G~~C~fsH~~~~ 41 (72)
T 2rhk_C 14 EKTVVCKHWLR-GLCKKGDQCEFLHEYDM 41 (72)
T ss_dssp CCCSBCHHHHT-TCCCCGGGSSSBCSCCT
T ss_pred CcCeeCHHHhc-CCCCCCCCCCCcccccc
Confidence 46789998876 99999999999999754
No 17
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=96.88 E-value=0.00045 Score=53.10 Aligned_cols=65 Identities=18% Similarity=0.401 Sum_probs=41.0
Q ss_pred ccccccccccCCCCC----CCCCCccCCCCCCCCCcc--------------------CCCCCccccccccccc---cccC
Q psy4482 18 KTEFCRNIDELGVCR----YSLKCQFAHHPGELLPKF--------------------THHPHYRTQLCRAYHK---AGYC 70 (133)
Q Consensus 18 Kt~lC~~f~~~G~C~----~G~~C~FaH~~~e~~~~~--------------------~~~~~~kt~~C~~f~~---~G~C 70 (133)
.--||++|+ -|.|. .+..|+|+|++....+.. ...|..-..+|.+|.. .|.|
T Consensus 88 ~LHLCK~~l-~G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~YkG~g~~g~C 166 (229)
T 3u9g_A 88 SLHLCKLNL-LGRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPEICKSYKGEGRKQTC 166 (229)
T ss_dssp SBCCCHHHH-TTCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCCBCTTCCCSSSCCSC
T ss_pred ceeechhhh-cCcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCchHHHHhCCCCCCCcC
Confidence 345899995 58994 346799999986532210 1223334567888832 3578
Q ss_pred CCCCCCccCCCCC
Q psy4482 71 SFGARCIFIHEER 83 (133)
Q Consensus 71 ~~G~~C~F~H~~~ 83 (133)
.+++.|...|.=.
T Consensus 167 ~~~~~C~kLHIC~ 179 (229)
T 3u9g_A 167 GQPQPCERLHICE 179 (229)
T ss_dssp SSSSCCCSBCSCH
T ss_pred CCCCCCcceeccc
Confidence 8888887776543
No 18
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=96.80 E-value=0.00021 Score=45.18 Aligned_cols=32 Identities=25% Similarity=0.548 Sum_probs=27.0
Q ss_pred CCCcccccccccccCCCCCCCCCCccCCCCCCCC
Q psy4482 14 NPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELL 47 (133)
Q Consensus 14 ~~~~Kt~lC~~f~~~G~C~~G~~C~FaH~~~e~~ 47 (133)
....++.+|.+|+ .|.|.+| +|.|+|....|+
T Consensus 37 ~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~L~ 68 (70)
T 3d2q_A 37 TNDNTVTVCMDYI-KGRCSRE-KCKYFHPPAHLQ 68 (70)
T ss_dssp TTTTEEEBCHHHH-TTCCCCT-TCCSBCCCHHHH
T ss_pred ccCCcceeccccC-cCCCCCC-CcCeeCCHHHHh
Confidence 4567899999995 5999999 999999987654
No 19
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.61 E-value=0.0005 Score=46.31 Aligned_cols=31 Identities=26% Similarity=0.716 Sum_probs=26.3
Q ss_pred CccccccccccccccCCCCC-CCccCCCCCCCC
Q psy4482 55 HYRTQLCRAYHKAGYCSFGA-RCIFIHEEREIS 86 (133)
Q Consensus 55 ~~kt~~C~~f~~~G~C~~G~-~C~F~H~~~~~~ 86 (133)
..+..+|++|.. |.|..|+ .|+|+|......
T Consensus 17 ~~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~ 48 (98)
T 2e5s_A 17 TDKLEVCREFQR-GNCARGETDCRFAHPADSTM 48 (98)
T ss_dssp SSEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCS
T ss_pred hhhhhhhHHHhc-CcCCCCCCCCCCcCCchhcc
Confidence 456789998885 9999999 799999998754
No 20
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=96.48 E-value=0.0014 Score=42.85 Aligned_cols=28 Identities=29% Similarity=0.762 Sum_probs=24.2
Q ss_pred cccccccccccccCCCCC-CCccCCCCCCC
Q psy4482 57 RTQLCRAYHKAGYCSFGA-RCIFIHEEREI 85 (133)
Q Consensus 57 kt~~C~~f~~~G~C~~G~-~C~F~H~~~~~ 85 (133)
+..+|++|.. |.|..|+ .|+|+|....+
T Consensus 8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~ 36 (83)
T 3d2n_A 8 TLEVCREFQR-GTCSRPDTECKFAHPSKSC 36 (83)
T ss_dssp EEEBCTTGGG-TCCCSCTTTCSSBCCCTTC
T ss_pred cchhcHHHhc-CCCCCCCCCCCCcCCCccc
Confidence 4578999986 9999997 99999998754
No 21
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=96.47 E-value=0.0017 Score=49.86 Aligned_cols=52 Identities=23% Similarity=0.630 Sum_probs=41.8
Q ss_pred cCCCCcccccccccccC----CCCCCCCCCccCCCCCCCCCccCCCCCccccccccccccccCCCCCCCccCCCCCC
Q psy4482 12 LLNPRYKTEFCRNIDEL----GVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIHEERE 84 (133)
Q Consensus 12 ~~~~~~Kt~lC~~f~~~----G~C~~G~~C~FaH~~~e~~~~~~~~~~~kt~~C~~f~~~G~C~~G~~C~F~H~~~~ 84 (133)
++.+..=.++|.+| +. |.|.+++.|...| +|++|. .|.|+| ..|.-+|+..+
T Consensus 144 QnDp~lLPeiC~~Y-kG~g~~g~C~~~~~C~kLH------------------IC~~Fl-~G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 144 QSDPFFLPEICKSY-KGEGRKQTCGQPQPCERLH------------------ICEHFT-RGNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp TTCGGGSCCBCTTC-CCSSSCCSCSSSSCCCSBC------------------SCHHHH-TTCCCC-SSCSSCCCTTS
T ss_pred cCCCccCchHHHHh-CCCCCCCcCCCCCCCccee------------------ccchhh-cCCcCC-CCccCccCccC
Confidence 34445557899999 63 6899999999776 699887 599999 89999999765
No 22
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=95.93 E-value=0.0031 Score=41.76 Aligned_cols=28 Identities=29% Similarity=0.775 Sum_probs=24.3
Q ss_pred cccccccccccccCCCCC-CCccCCCCCCC
Q psy4482 57 RTQLCRAYHKAGYCSFGA-RCIFIHEEREI 85 (133)
Q Consensus 57 kt~~C~~f~~~G~C~~G~-~C~F~H~~~~~ 85 (133)
+..+|+.|.. |.|..|+ .|+|+|.....
T Consensus 16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~ 44 (89)
T 2rpp_A 16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSC 44 (89)
T ss_dssp EECBCHHHHH-TCCCCCTTTSSSBCCCSSS
T ss_pred hhhhchHHhc-CCCCCCCCCCCCcCCCccc
Confidence 3478999986 9999998 99999998864
No 23
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=93.48 E-value=0.0068 Score=39.43 Aligned_cols=21 Identities=24% Similarity=0.581 Sum_probs=16.3
Q ss_pred cccccccccCCCCCCCCCCccCCCC
Q psy4482 19 TEFCRNIDELGVCRYSLKCQFAHHP 43 (133)
Q Consensus 19 t~lC~~f~~~G~C~~G~~C~FaH~~ 43 (133)
.++|+||. .|.. +.|.|.|..
T Consensus 9 ~e~CKf~~---~Ctn-~~C~f~Hp~ 29 (80)
T 2lhn_A 9 LEQCKFGT---HCTN-KRCKYRHAR 29 (80)
Confidence 46798884 3887 899999964
No 24
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=93.81 E-value=0.016 Score=44.67 Aligned_cols=26 Identities=31% Similarity=0.680 Sum_probs=22.0
Q ss_pred cccccccccCCCCCCCCCCccCCCCCC
Q psy4482 19 TEFCRNIDELGVCRYSLKCQFAHHPGE 45 (133)
Q Consensus 19 t~lC~~f~~~G~C~~G~~C~FaH~~~e 45 (133)
..+|.||. .|.|.+|+.|.|.|....
T Consensus 70 ~~~C~ffa-kG~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 70 LFFCLFFA-KGMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp CSBCHHHH-TTCCSCGGGCSSBBSCCC
T ss_pred CeEcCccc-cCCCCCCCCCCccCCCCC
Confidence 35999995 599999999999997643
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=90.33 E-value=0.055 Score=41.56 Aligned_cols=25 Identities=28% Similarity=0.875 Sum_probs=21.3
Q ss_pred cccccccccccCCCCCCCccCCCCCC
Q psy4482 59 QLCRAYHKAGYCSFGARCIFIHEERE 84 (133)
Q Consensus 59 ~~C~~f~~~G~C~~G~~C~F~H~~~~ 84 (133)
.+|.+|.. |.|..|..|.|.|....
T Consensus 71 ~~C~ffak-G~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 71 FFCLFFAK-GMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp SBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred eEcCcccc-CCCCCCCCCCccCCCCC
Confidence 48998875 99999999999997543
No 26
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=73.46 E-value=0.69 Score=35.26 Aligned_cols=27 Identities=41% Similarity=0.918 Sum_probs=0.0
Q ss_pred cccccccccccccCCCCCCCccCCCCCCCC
Q psy4482 57 RTQLCRAYHKAGYCSFGARCIFIHEEREIS 86 (133)
Q Consensus 57 kt~~C~~f~~~G~C~~G~~C~F~H~~~~~~ 86 (133)
+..+|+ |. -.|.||.+|.|.|.+....
T Consensus 191 ~~~~~~-~~--~~~~~~~~~~~~~~~~~~~ 217 (223)
T 3v33_A 191 RKQPCP-YG--RKCTYGIKCRFFHPERPSC 217 (223)
T ss_dssp ------------------------------
T ss_pred CCCCCC-CC--cccccCCcceecCCccCCc
Confidence 456799 53 3799999999999876543
No 27
>2kuo_A Aprataxin and PNK-like factor; aprataxin PNK-like factor (APLF), poly ADP-ribose (PAR), PAR zinc finger (PBZ), DNA damage, ADP-ribose; NMR {Homo sapiens}
Probab=70.83 E-value=2.9 Score=27.53 Aligned_cols=19 Identities=21% Similarity=0.700 Sum_probs=13.1
Q ss_pred ccCCCCCCCc---------cCCCCCCCC
Q psy4482 68 GYCSFGARCI---------FIHEEREIS 86 (133)
Q Consensus 68 G~C~~G~~C~---------F~H~~~~~~ 86 (133)
-.|+||..|- |.|.....+
T Consensus 62 p~C~YG~~CYRkNp~H~~ey~Hp~~~~~ 89 (91)
T 2kuo_A 62 PECPYGPSCYRKNPQHKIEYRHNTLPVR 89 (91)
T ss_dssp CBCTTGGGCCCCCHHHHHHSBCCCCCCC
T ss_pred CCCCCchhhhcCCHHHHHhccCCCCCcc
Confidence 3688999995 667665443
No 28
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=70.12 E-value=0.91 Score=34.58 Aligned_cols=25 Identities=28% Similarity=0.651 Sum_probs=0.0
Q ss_pred ccccccccccCCCCCCCCCCccCCCCCC
Q psy4482 18 KTEFCRNIDELGVCRYSLKCQFAHHPGE 45 (133)
Q Consensus 18 Kt~lC~~f~~~G~C~~G~~C~FaH~~~e 45 (133)
+..+|++- ..|.||.+|.|-|.+..
T Consensus 191 ~~~~~~~~---~~~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 191 RKQPCPYG---RKCTYGIKCRFFHPERP 215 (223)
T ss_dssp ----------------------------
T ss_pred CCCCCCCC---cccccCCcceecCCccC
Confidence 56789964 45999999999998643
No 29
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=63.24 E-value=5.9 Score=25.90 Aligned_cols=10 Identities=30% Similarity=1.006 Sum_probs=0.0
Q ss_pred ccCCCCCCCc
Q psy4482 68 GYCSFGARCI 77 (133)
Q Consensus 68 G~C~~G~~C~ 77 (133)
-.|+||..|-
T Consensus 57 p~C~YG~~CY 66 (89)
T 2kqb_A 57 PECPYGPSCY 66 (89)
T ss_dssp ----------
T ss_pred CCCCCchhhh
Confidence 3689999996
Done!