Your job contains 1 sequence.
>psy4482
MESLSQRTKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQL
CRAYHKAGYCSFGARCIFIHEEREISPPDAKHNPRIIYVNPEYEACCTRDTQHIRRYERH
NATNQPAAPAQSD
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4482
(133 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-030131-6366 - symbol:zgc:162730 "zgc:162730... 234 1.2e-19 1
UNIPROTKB|Q7ZXW9 - symbol:zfp36l2-A "Zinc finger protein ... 227 1.1e-18 1
ZFIN|ZDB-GENE-030131-2391 - symbol:zfp36l1b "zinc finger ... 223 2.3e-18 1
UNIPROTKB|Q805B4 - symbol:zfp36l2-B "Zinc finger protein ... 224 2.4e-18 1
ZFIN|ZDB-GENE-990806-20 - symbol:cth1 "cth1" species:7955... 221 2.8e-18 1
UNIPROTKB|A4IIN5 - symbol:zfp36l2 "Zinc finger protein 36... 219 4.9e-18 1
ZFIN|ZDB-GENE-030131-9860 - symbol:zfp36l1a "zinc finger ... 216 2.3e-17 1
RGD|620722 - symbol:Zfp36 "zinc finger protein 36" specie... 212 2.5e-17 1
UNIPROTKB|P47973 - symbol:Zfp36 "Tristetraprolin" species... 212 2.5e-17 1
UNIPROTKB|G3V2D5 - symbol:ZFP36L1 "Zinc finger protein 36... 211 3.2e-17 1
UNIPROTKB|G3V2P5 - symbol:ZFP36L1 "Zinc finger protein 36... 211 3.2e-17 1
MGI|MGI:107945 - symbol:Zfp36l2 "zinc finger protein 36, ... 214 3.5e-17 1
UNIPROTKB|A7MB98 - symbol:ZFP36L1 "Uncharacterized protei... 211 4.9e-17 1
UNIPROTKB|E2R2W0 - symbol:ZFP36L1 "Uncharacterized protei... 211 4.9e-17 1
UNIPROTKB|Q07352 - symbol:ZFP36L1 "Zinc finger protein 36... 211 4.9e-17 1
UNIPROTKB|I3LB77 - symbol:ZFP36L1 "Uncharacterized protei... 211 4.9e-17 1
MGI|MGI:107946 - symbol:Zfp36l1 "zinc finger protein 36, ... 211 4.9e-17 1
RGD|62009 - symbol:Zfp36l1 "zinc finger protein 36, C3H t... 211 4.9e-17 1
UNIPROTKB|P17431 - symbol:Zfp36l1 "Zinc finger protein 36... 211 4.9e-17 1
UNIPROTKB|F1MV20 - symbol:F1MV20 "Uncharacterized protein... 214 6.8e-17 1
RGD|1308913 - symbol:Zfp36l2 "zinc finger protein 36, C3H... 214 8.9e-17 1
UNIPROTKB|J9NWC9 - symbol:ZFP36L2 "Uncharacterized protei... 214 9.3e-17 1
UNIPROTKB|F1S5I0 - symbol:ZFP36L2 "Uncharacterized protei... 214 9.4e-17 1
UNIPROTKB|P47974 - symbol:ZFP36L2 "Zinc finger protein 36... 214 9.4e-17 1
UNIPROTKB|F1LVT2 - symbol:F1LVT2 "Uncharacterized protein... 213 1.2e-16 1
UNIPROTKB|G3MWV8 - symbol:ZFP36 "Tristetraprolin" species... 205 1.9e-16 1
UNIPROTKB|P53781 - symbol:ZFP36 "Tristetraprolin" species... 205 1.9e-16 1
UNIPROTKB|Q0VCR3 - symbol:ZFP36 "Tristetraprolin" species... 205 2.0e-16 1
UNIPROTKB|D0VE66 - symbol:LOC100623625 "Tristetraprolin" ... 205 2.0e-16 1
UNIPROTKB|Q6S9E0 - symbol:ZFP36 "Tristetraprolin" species... 204 2.6e-16 1
RGD|1559581 - symbol:Zfp36l3 "zinc finger protein 36, C3H... 213 2.6e-16 1
ZFIN|ZDB-GENE-050913-48 - symbol:zgc:114130 "zgc:114130" ... 207 2.9e-16 1
ZFIN|ZDB-GENE-030131-5873 - symbol:zfp36l2 "zinc finger p... 206 3.0e-16 1
MGI|MGI:99180 - symbol:Zfp36 "zinc finger protein 36" spe... 202 3.9e-16 1
UNIPROTKB|P26651 - symbol:ZFP36 "Tristetraprolin" species... 201 5.9e-16 1
WB|WBGene00009532 - symbol:ccch-1 species:6239 "Caenorhab... 205 7.6e-16 1
DICTYBASE|DDB_G0285973 - symbol:DDB_G0285973 "Butyrate re... 204 8.5e-16 1
FB|FBgn0011837 - symbol:Tis11 "Tis11 homolog" species:722... 201 1.8e-15 1
UNIPROTKB|E2RKS9 - symbol:ZFP36 "Uncharacterized protein"... 194 3.7e-15 1
UNIPROTKB|J9NTC7 - symbol:ZFP36 "Uncharacterized protein"... 186 1.8e-14 1
POMBASE|SPBC1718.07c - symbol:zfs1 "CCCH tandem zinc fing... 180 3.0e-13 1
SGD|S000002558 - symbol:CTH1 "Member of the CCCH zinc fin... 154 1.2e-10 1
SGD|S000004126 - symbol:TIS11 "mRNA-binding protein expre... 152 1.3e-10 1
WB|WBGene00009537 - symbol:ccch-2 species:6239 "Caenorhab... 146 2.5e-10 1
CGD|CAL0004295 - symbol:orf19.5334 species:5476 "Candida ... 145 3.2e-10 1
WB|WBGene00013794 - symbol:dct-13 species:6239 "Caenorhab... 140 1.1e-09 1
TAIR|locus:2033384 - symbol:AT1G66810 species:3702 "Arabi... 145 1.1e-09 1
WB|WBGene00003864 - symbol:oma-1 species:6239 "Caenorhabd... 146 1.6e-09 1
UNIPROTKB|G5EC86 - symbol:oma-1 "Protein OMA-1" species:6... 146 1.6e-09 1
WB|WBGene00013319 - symbol:ccch-5 species:6239 "Caenorhab... 138 1.8e-09 1
TAIR|locus:2199352 - symbol:AT1G68200 species:3702 "Arabi... 143 1.8e-09 1
WB|WBGene00003228 - symbol:mex-1 species:6239 "Caenorhabd... 143 4.7e-09 1
WB|WBGene00003865 - symbol:oma-2 species:6239 "Caenorhabd... 139 8.4e-09 1
WB|WBGene00003388 - symbol:moe-3 species:6239 "Caenorhabd... 138 9.4e-09 1
WB|WBGene00007961 - symbol:C35D6.4 species:6239 "Caenorha... 131 9.7e-09 1
WB|WBGene00004078 - symbol:pos-1 species:6239 "Caenorhabd... 134 1.1e-08 1
WB|WBGene00009539 - symbol:F38C2.7 species:6239 "Caenorha... 130 1.2e-08 1
WB|WBGene00013796 - symbol:Y116A8C.19 species:6239 "Caeno... 129 1.6e-08 1
WB|WBGene00013797 - symbol:Y116A8C.20 species:6239 "Caeno... 124 5.3e-08 1
WB|WBGene00013370 - symbol:Y60A9.3 species:6239 "Caenorha... 124 5.4e-08 1
UNIPROTKB|F1LVN6 - symbol:F1LVN6 "Uncharacterized protein... 125 1.8e-07 1
WB|WBGene00003230 - symbol:mex-5 species:6239 "Caenorhabd... 112 9.5e-06 1
TAIR|locus:2062476 - symbol:AT2G35430 species:3702 "Arabi... 85 3.4e-05 2
WB|WBGene00003231 - symbol:mex-6 species:6239 "Caenorhabd... 103 8.8e-05 1
TAIR|locus:2028306 - symbol:AT1G32360 species:3702 "Arabi... 81 9.1e-05 2
TAIR|locus:2101170 - symbol:AT3G48440 species:3702 "Arabi... 98 0.00029 1
>ZFIN|ZDB-GENE-030131-6366 [details] [associations]
symbol:zgc:162730 "zgc:162730" species:7955 "Danio
rerio" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
ZFIN:ZDB-GENE-030131-6366 GO:GO:0008270 GO:GO:0003676
HOGENOM:HOG000233479 EMBL:BC139894 IPI:IPI00933596
UniGene:Dr.106159 STRING:A5D6V0 HOVERGEN:HBG105016
InParanoid:A5D6V0 OrthoDB:EOG4PK294 ArrayExpress:A5D6V0
Uniprot:A5D6V0
Length = 336
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 49/118 (41%), Positives = 68/118 (57%)
Query: 10 AILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGY 69
A L + RYKTE CR+ E G C+Y KCQFAH EL + HP Y+TQ CR +++ GY
Sbjct: 106 ATLPSNRYKTELCRSFQEHGSCKYGAKCQFAHGENELRGLY-RHPKYKTQACRTFYQFGY 164
Query: 70 CSFGARCIFIHEEREISPPDAKHNPRIIYVNPEYEACCTRDTQHIRRYERHNATNQPA 127
C +G+RC FIHEE+ ++ NPR + + + A TR + YE + T P+
Sbjct: 165 CPYGSRCHFIHEEKSSL---SEQNPRQLRQSVSF-AGFTRSSSPPSSYESLSFTRAPS 218
>UNIPROTKB|Q7ZXW9 [details] [associations]
symbol:zfp36l2-A "Zinc finger protein 36, C3H1 type-like
2-A" species:8355 "Xenopus laevis" [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0043488 "regulation of mRNA
stability" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 GO:GO:0005737 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003723 GO:GO:0043488
GO:GO:0000288 HSSP:P22893 GO:GO:0048793 HOVERGEN:HBG008483
InterPro:IPR007635 Pfam:PF04553 EMBL:BC044086 EMBL:AF061982
RefSeq:NP_001080610.1 UniGene:Xl.23743 UniGene:Xl.476
ProteinModelPortal:Q7ZXW9 SMR:Q7ZXW9 GeneID:380302 KEGG:xla:380302
CTD:380302 Xenbase:XB-GENE-6256550 Uniprot:Q7ZXW9
Length = 363
Score = 227 (85.0 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 44/98 (44%), Positives = 58/98 (59%)
Query: 1 MESLSQRTKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQL 60
++ Q+ A + + RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+L
Sbjct: 116 LQQQQQKAGAQVNSTRYKTELCRPFEESGACKYGEKCQFAHGFHELR-SLTRHPKYKTEL 174
Query: 61 CRAYHKAGYCSFGARCIFIH--EEREISPPDAKHNPRI 96
CR +H G+C +G RC FIH EER P A P++
Sbjct: 175 CRTFHTIGFCPYGPRCHFIHNAEERR-QAPGAGERPKL 211
>ZFIN|ZDB-GENE-030131-2391 [details] [associations]
symbol:zfp36l1b "zinc finger protein 36, C3H
type-like 1b" species:7955 "Danio rerio" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
ZFIN:ZDB-GENE-030131-2391 GO:GO:0008270 GO:GO:0003676
GeneTree:ENSGT00530000063262 HOGENOM:HOG000233479
HOVERGEN:HBG008483 InterPro:IPR007635 Pfam:PF04553 EMBL:BX649319
EMBL:BC063991 IPI:IPI00481341 RefSeq:NP_955943.1 UniGene:Dr.78307
SMR:Q6P3H0 Ensembl:ENSDART00000014168 GeneID:323671 KEGG:dre:323671
CTD:323671 InParanoid:Q6P3H0 OMA:SSITCIS NextBio:20808378
Uniprot:Q6P3H0
Length = 348
Score = 223 (83.6 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 42/80 (52%), Positives = 49/80 (61%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL HP Y+T+LCR +H GYC +G R
Sbjct: 137 RYKTELCRPFEENGTCKYGDKCQFAHGMHELR-SLNRHPKYKTELCRTFHSIGYCPYGPR 195
Query: 76 CIFIH--EEREISPPDAKHN 93
C FIH EER PP + N
Sbjct: 196 CHFIHNAEERRGPPPLSSFN 215
Score = 96 (38.9 bits), Expect = 0.00064, P = 0.00064
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 14 NPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELL---PKFTHHPHYRTQLCRAYHKAGYC 70
+P+YKTE CR +G C Y +C F H+ E P + + R +L ++ AG+
Sbjct: 173 HPKYKTELCRTFHSIGYCPYGPRCHFIHNAEERRGPPPLSSFNKMERPRLHHSFSFAGFP 232
Query: 71 SFG 73
S G
Sbjct: 233 SSG 235
>UNIPROTKB|Q805B4 [details] [associations]
symbol:zfp36l2-B "Zinc finger protein 36, C3H1 type-like
2-B" species:8355 "Xenopus laevis" [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0039020 "pronephric nephron tubule
development" evidence=IMP] [GO:0043488 "regulation of mRNA
stability" evidence=ISS] [GO:0048793 "pronephros development"
evidence=IMP] [GO:0072080 "nephron tubule development"
evidence=IMP] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 GO:GO:0005737 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003723 GO:GO:0043488
GO:GO:0000288 HSSP:P22893 GO:GO:0039020 HOVERGEN:HBG008483
InterPro:IPR007635 Pfam:PF04553 EMBL:AF061982 UniGene:Xl.476
EMBL:AB097482 EMBL:BC084221 RefSeq:NP_001081886.1
ProteinModelPortal:Q805B4 SMR:Q805B4 GeneID:398103 KEGG:xla:398103
CTD:398103 Xenbase:XB-GENE-971016 Uniprot:Q805B4
Length = 364
Score = 224 (83.9 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 44/93 (47%), Positives = 56/93 (60%)
Query: 6 QRTKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYH 65
Q+ A + + RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H
Sbjct: 123 QKAGAQVNSTRYKTELCRPFEENGACKYGEKCQFAHGFHELR-SLTRHPKYKTELCRTFH 181
Query: 66 KAGYCSFGARCIFIH--EEREISPPDAKHNPRI 96
G+C +G RC FIH EER P A P++
Sbjct: 182 TIGFCPYGPRCHFIHNAEERR-QAPGAGERPKL 213
>ZFIN|ZDB-GENE-990806-20 [details] [associations]
symbol:cth1 "cth1" species:7955 "Danio rerio"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 ZFIN:ZDB-GENE-990806-20 GO:GO:0008270
GO:GO:0003676 HSSP:P22893 GeneTree:ENSGT00530000063262
EMBL:AL954709 EMBL:BC107984 EMBL:AJ249490 IPI:IPI00509714
RefSeq:NP_571014.1 UniGene:Dr.621 SMR:Q9PU62 STRING:Q9PU62
Ensembl:ENSDART00000101601 GeneID:30114 KEGG:dre:30114 CTD:30114
HOGENOM:HOG000153347 HOVERGEN:HBG078993 InParanoid:Q9PU62 KO:K13056
OMA:FTFSSQH NextBio:20806593 Uniprot:Q9PU62
Length = 319
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 43/91 (47%), Positives = 57/91 (62%)
Query: 1 MESLSQRTKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGEL-LPKFTHHPHYRTQ 59
+ES S L + RYKTE C E G C+Y+ +CQFAH +L +P + HP Y+T+
Sbjct: 44 VESPSPPMTPWLCSTRYKTELCSRYAETGTCKYAERCQFAHGLHDLHVP--SRHPKYKTE 101
Query: 60 LCRAYHKAGYCSFGARCIFIH---EEREISP 87
LCR YH AGYC +G RC+F+H E+R I P
Sbjct: 102 LCRTYHTAGYCVYGTRCLFVHNLKEQRPIRP 132
Score = 142 (55.0 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 28/69 (40%), Positives = 34/69 (49%)
Query: 14 NPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFG 73
+P+YKTE CR G C Y +C F H+ E P P R CR + G C FG
Sbjct: 95 HPKYKTELCRTYHTAGYCVYGTRCLFVHNLKEQRPI---RPRRRNVPCRTFRAFGVCPFG 151
Query: 74 ARCIFIHEE 82
RC F+H E
Sbjct: 152 NRCHFLHVE 160
>UNIPROTKB|A4IIN5 [details] [associations]
symbol:zfp36l2 "Zinc finger protein 36, C3H1 type-like 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0048793
"pronephros development" evidence=ISS] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003723 GO:GO:0043488 GO:GO:0000288 eggNOG:COG5063
GO:GO:0048793 HOGENOM:HOG000233479 HOVERGEN:HBG008483
InterPro:IPR007635 Pfam:PF04553 CTD:678 EMBL:BC136091
RefSeq:NP_001096423.1 UniGene:Str.6563 STRING:A4IIN5
GeneID:100125029 KEGG:xtr:100125029 Xenbase:XB-GENE-971012
Uniprot:A4IIN5
Length = 333
Score = 219 (82.2 bits), Expect = 4.9e-18, P = 4.9e-18
Identities = 43/93 (46%), Positives = 55/93 (59%)
Query: 6 QRTKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYH 65
Q+ A + + RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H
Sbjct: 91 QKAGAQVNSTRYKTELCRPFEESGACKYGEKCQFAHGFHELR-SLTRHPKYKTELCRTFH 149
Query: 66 KAGYCSFGARCIFIH--EEREISPPDAKHNPRI 96
G+C +G RC IH EER P A P++
Sbjct: 150 TIGFCPYGPRCHLIHNAEERR-QAPGAGERPKL 181
>ZFIN|ZDB-GENE-030131-9860 [details] [associations]
symbol:zfp36l1a "zinc finger protein 36, C3H
type-like 1a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
ZFIN:ZDB-GENE-030131-9860 GO:GO:0008270 GO:GO:0003676
eggNOG:COG5063 HOGENOM:HOG000233479 HOVERGEN:HBG008483
OrthoDB:EOG480HXD InterPro:IPR007635 Pfam:PF04553 EMBL:BC124505
IPI:IPI00482112 RefSeq:NP_001070621.1 UniGene:Dr.105582
UniGene:Dr.107563 UniGene:Dr.31482 UniGene:Dr.76498
ProteinModelPortal:Q08BY3 SMR:Q08BY3 GeneID:561280 KEGG:dre:561280
CTD:561280 InParanoid:Q08BY3 NextBio:20883849 Uniprot:Q08BY3
Length = 374
Score = 216 (81.1 bits), Expect = 2.3e-17, P = 2.3e-17
Identities = 40/75 (53%), Positives = 48/75 (64%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL + HP Y+T+LCR +H G+C +G R
Sbjct: 144 RYKTELCRPFEENGACKYGDKCQFAHGIHELR-SLSRHPKYKTELCRTFHTIGFCPYGPR 202
Query: 76 CIFIH--EEREISPP 88
C FIH EER PP
Sbjct: 203 CHFIHNAEERRGPPP 217
>RGD|620722 [details] [associations]
symbol:Zfp36 "zinc finger protein 36" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA;ISO] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA;ISO;ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;ISS;IDA] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006402 "mRNA catabolic process"
evidence=ISO;ISS] [GO:0006950 "response to stress"
evidence=IEA;ISO;ISS] [GO:0007243 "intracellular protein kinase
cascade" evidence=IEA;ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA;ISO;ISS] [GO:0017091 "AU-rich element binding"
evidence=ISO;ISS] [GO:0019901 "protein kinase binding"
evidence=IEA;ISO] [GO:0019957 "C-C chemokine binding"
evidence=IEA;ISO] [GO:0032680 "regulation of tumor necrosis factor
production" evidence=IEA;ISO;ISS] [GO:0035925 "mRNA 3'-UTR AU-rich
region binding" evidence=IEA;ISO] [GO:0043488 "regulation of mRNA
stability" evidence=ISO] [GO:0045638 "negative regulation of
myeloid cell differentiation" evidence=IEA;ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0050728 "negative regulation of inflammatory response"
evidence=IEA;ISO] [GO:0050779 "RNA destabilization"
evidence=IEA;ISO] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IEA;ISO;ISS] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA;ISO;ISS] [GO:0071889 "14-3-3 protein
binding" evidence=IEA;ISO;ISS] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 RGD:620722 GO:GO:0005829
GO:GO:0005634 GO:GO:0045893 GO:GO:0006950 GO:GO:0046872
GO:GO:0003677 GO:GO:0050728 GO:GO:0008270 GO:GO:0003729
GO:GO:0007243 GO:GO:0017091 GO:GO:0000122 GO:GO:0006402
GO:GO:0071889 GO:GO:0010494 GO:GO:0060213 eggNOG:COG5063
GO:GO:0000289 GO:GO:0045638 GO:GO:0070935 GO:GO:0032680
GO:GO:0050779 HOGENOM:HOG000233479 HOVERGEN:HBG008483 CTD:7538
KO:K15308 OMA:RRLPIFN OrthoDB:EOG4S4PH4 EMBL:X63369 EMBL:AB025017
EMBL:BC060308 IPI:IPI00192126 PIR:JC1255 RefSeq:NP_579824.2
UniGene:Rn.82737 ProteinModelPortal:P47973 SMR:P47973 STRING:P47973
PhosphoSite:P47973 PRIDE:P47973 GeneID:79426 KEGG:rno:79426
UCSC:RGD:620722 InParanoid:P47973 NextBio:614778
Genevestigator:P47973 GermOnline:ENSRNOG00000019673 Uniprot:P47973
Length = 320
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 39/78 (50%), Positives = 48/78 (61%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR E G CRY KCQFAH PGEL + HP Y+T+LC ++ G C +G+R
Sbjct: 96 RYKTELCRTYSESGRCRYGAKCQFAHGPGELR-QANRHPKYKTELCHKFYLQGRCPYGSR 154
Query: 76 CIFIHEERE-ISPPDAKH 92
C FIH E ++ P H
Sbjct: 155 CHFIHNPTEDLALPGQPH 172
>UNIPROTKB|P47973 [details] [associations]
symbol:Zfp36 "Tristetraprolin" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0007243 "intracellular
protein kinase cascade" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0019901 "protein kinase binding"
evidence=IEA] [GO:0019957 "C-C chemokine binding" evidence=IEA]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=IEA]
[GO:0045638 "negative regulation of myeloid cell differentiation"
evidence=IEA] [GO:0050728 "negative regulation of inflammatory
response" evidence=IEA] [GO:0050779 "RNA destabilization"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 RGD:620722 GO:GO:0005829 GO:GO:0005634 GO:GO:0045893
GO:GO:0006950 GO:GO:0046872 GO:GO:0003677 GO:GO:0050728
GO:GO:0008270 GO:GO:0003729 GO:GO:0007243 GO:GO:0017091
GO:GO:0000122 GO:GO:0006402 GO:GO:0071889 GO:GO:0010494
GO:GO:0060213 eggNOG:COG5063 GO:GO:0000289 GO:GO:0045638
GO:GO:0070935 GO:GO:0032680 GO:GO:0050779 HOGENOM:HOG000233479
HOVERGEN:HBG008483 CTD:7538 KO:K15308 OMA:RRLPIFN OrthoDB:EOG4S4PH4
EMBL:X63369 EMBL:AB025017 EMBL:BC060308 IPI:IPI00192126 PIR:JC1255
RefSeq:NP_579824.2 UniGene:Rn.82737 ProteinModelPortal:P47973
SMR:P47973 STRING:P47973 PhosphoSite:P47973 PRIDE:P47973
GeneID:79426 KEGG:rno:79426 UCSC:RGD:620722 InParanoid:P47973
NextBio:614778 Genevestigator:P47973 GermOnline:ENSRNOG00000019673
Uniprot:P47973
Length = 320
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 39/78 (50%), Positives = 48/78 (61%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR E G CRY KCQFAH PGEL + HP Y+T+LC ++ G C +G+R
Sbjct: 96 RYKTELCRTYSESGRCRYGAKCQFAHGPGELR-QANRHPKYKTELCHKFYLQGRCPYGSR 154
Query: 76 CIFIHEERE-ISPPDAKH 92
C FIH E ++ P H
Sbjct: 155 CHFIHNPTEDLALPGQPH 172
>UNIPROTKB|G3V2D5 [details] [associations]
symbol:ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0033077 "T cell differentiation in
thymus" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005829 GO:GO:0005634
GO:GO:0006417 GO:GO:0008270 GO:GO:0003729 GO:GO:0017091
GO:GO:0033077 GO:GO:0001570 GO:GO:0000288 HGNC:HGNC:1107
ChiTaRS:ZFP36L1 InterPro:IPR007635 Pfam:PF04553 EMBL:AL132986
ProteinModelPortal:G3V2D5 SMR:G3V2D5 Ensembl:ENST00000557022
ArrayExpress:G3V2D5 Bgee:G3V2D5 Uniprot:G3V2D5
Length = 176
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 39/70 (55%), Positives = 46/70 (65%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 92 RYKTELCRPFEENGACKYGDKCQFAHGIHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 150
Query: 76 CIFIH--EER 83
C FIH EER
Sbjct: 151 CHFIHNAEER 160
>UNIPROTKB|G3V2P5 [details] [associations]
symbol:ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 HGNC:HGNC:1107 ChiTaRS:ZFP36L1
InterPro:IPR007635 Pfam:PF04553 EMBL:AL132986
ProteinModelPortal:G3V2P5 SMR:G3V2P5 Ensembl:ENST00000557086
ArrayExpress:G3V2P5 Bgee:G3V2P5 Uniprot:G3V2P5
Length = 207
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 39/70 (55%), Positives = 46/70 (65%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 120 RYKTELCRPFEENGACKYGDKCQFAHGIHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 178
Query: 76 CIFIH--EER 83
C FIH EER
Sbjct: 179 CHFIHNAEER 188
>MGI|MGI:107945 [details] [associations]
symbol:Zfp36l2 "zinc finger protein 36, C3H type-like 2"
species:10090 "Mus musculus" [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0033077 "T cell differentiation in thymus" evidence=IGI]
[GO:0043488 "regulation of mRNA stability" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 MGI:MGI:107945
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003723 GO:GO:0033077 GO:GO:0043488
GO:GO:0000288 eggNOG:COG5063 HOVERGEN:HBG008483 OrthoDB:EOG480HXD
InterPro:IPR007635 Pfam:PF04553 ChiTaRS:ZFP36L2 EMBL:M58564
EMBL:M97165 IPI:IPI00138319 PIR:C39590 UniGene:Mm.259321
ProteinModelPortal:P23949 SMR:P23949 STRING:P23949
PhosphoSite:P23949 PaxDb:P23949 PRIDE:P23949 InParanoid:P23949
CleanEx:MM_ZFP36L2 Genevestigator:P23949
GermOnline:ENSMUSG00000045817 Uniprot:P23949
Length = 367
Score = 214 (80.4 bits), Expect = 3.5e-17, P = 3.5e-17
Identities = 39/74 (52%), Positives = 48/74 (64%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 126 RYKTELCRPFEESGTCKYGEKCQFAHGFHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 184
Query: 76 CIFIH--EEREISP 87
C FIH +ER +P
Sbjct: 185 CHFIHNADERRPAP 198
>UNIPROTKB|A7MB98 [details] [associations]
symbol:ZFP36L1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0033077 "T cell differentiation in thymus" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0008270 GO:GO:0003676 GO:GO:0033077 GO:GO:0001570
GO:GO:0043488 GO:GO:0000288 eggNOG:COG5063
GeneTree:ENSGT00530000063262 CTD:677 HOGENOM:HOG000233479
HOVERGEN:HBG008483 OMA:HSYSFAG OrthoDB:EOG480HXD InterPro:IPR007635
Pfam:PF04553 EMBL:DAAA02029486 EMBL:BC151440 IPI:IPI00709262
RefSeq:NP_001094704.1 UniGene:Bt.61758 SMR:A7MB98 STRING:A7MB98
Ensembl:ENSBTAT00000035742 GeneID:614773 KEGG:bta:614773
InParanoid:A7MB98 NextBio:20899277 Uniprot:A7MB98
Length = 338
Score = 211 (79.3 bits), Expect = 4.9e-17, P = 4.9e-17
Identities = 39/70 (55%), Positives = 46/70 (65%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 114 RYKTELCRPFEENGACKYGDKCQFAHGIHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 172
Query: 76 CIFIH--EER 83
C FIH EER
Sbjct: 173 CHFIHNAEER 182
>UNIPROTKB|E2R2W0 [details] [associations]
symbol:ZFP36L1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0033077 "T cell differentiation in thymus"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0008270 GO:GO:0003676 GO:GO:0033077 GO:GO:0001570
GO:GO:0043488 GO:GO:0000288 GeneTree:ENSGT00530000063262 CTD:677
OMA:HSYSFAG InterPro:IPR007635 Pfam:PF04553 EMBL:AAEX03005803
RefSeq:XP_853070.1 Ensembl:ENSCAFT00000026141 GeneID:490748
KEGG:cfa:490748 NextBio:20863709 Uniprot:E2R2W0
Length = 338
Score = 211 (79.3 bits), Expect = 4.9e-17, P = 4.9e-17
Identities = 39/70 (55%), Positives = 46/70 (65%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 114 RYKTELCRPFEENGACKYGDKCQFAHGIHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 172
Query: 76 CIFIH--EER 83
C FIH EER
Sbjct: 173 CHFIHNAEER 182
>UNIPROTKB|Q07352 [details] [associations]
symbol:ZFP36L1 "Zinc finger protein 36, C3H1 type-like 1"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0033077 "T cell differentiation in
thymus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0043488 "regulation of
mRNA stability" evidence=IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=NAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005829 GO:GO:0005634 GO:GO:0010467 GO:GO:0016071
GO:GO:0006417 PDB:1W0V PDB:1W0W PDBsum:1W0V PDBsum:1W0W
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003729
GO:GO:0003700 GO:GO:0017091 GO:GO:0033077 GO:GO:0001570
GO:GO:0043488 GO:GO:0000288 eggNOG:COG5063 CleanEx:HS_BRF1
EMBL:X79066 EMBL:X79067 EMBL:X99404 EMBL:BT019468 EMBL:BC018340
IPI:IPI00016635 PIR:S34854 RefSeq:NP_001231627.1
RefSeq:NP_001231630.1 RefSeq:NP_004917.2 UniGene:Hs.85155
ProteinModelPortal:Q07352 SMR:Q07352 IntAct:Q07352
MINT:MINT-1375566 STRING:Q07352 PhosphoSite:Q07352 DMDM:1351254
PaxDb:Q07352 PeptideAtlas:Q07352 PRIDE:Q07352 DNASU:677
Ensembl:ENST00000336440 Ensembl:ENST00000439696 GeneID:677
KEGG:hsa:677 UCSC:uc001xkh.2 CTD:677 GeneCards:GC14M069254
HGNC:HGNC:1107 HPA:HPA001301 MIM:601064 neXtProt:NX_Q07352
PharmGKB:PA35027 HOGENOM:HOG000233479 HOVERGEN:HBG008483
InParanoid:Q07352 OMA:HSYSFAG OrthoDB:EOG480HXD PhylomeDB:Q07352
ChiTaRS:ZFP36L1 EvolutionaryTrace:Q07352 GenomeRNAi:677
NextBio:2790 ArrayExpress:Q07352 Bgee:Q07352 CleanEx:HS_ZFP36L1
Genevestigator:Q07352 GermOnline:ENSG00000185650 InterPro:IPR007635
Pfam:PF04553 Uniprot:Q07352
Length = 338
Score = 211 (79.3 bits), Expect = 4.9e-17, P = 4.9e-17
Identities = 39/70 (55%), Positives = 46/70 (65%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 114 RYKTELCRPFEENGACKYGDKCQFAHGIHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 172
Query: 76 CIFIH--EER 83
C FIH EER
Sbjct: 173 CHFIHNAEER 182
>UNIPROTKB|I3LB77 [details] [associations]
symbol:ZFP36L1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0033077 "T cell differentiation in thymus" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0008270 GO:GO:0003676 GO:GO:0033077 GO:GO:0001570
GO:GO:0043488 GO:GO:0000288 GeneTree:ENSGT00530000063262 CTD:677
OMA:HSYSFAG InterPro:IPR007635 Pfam:PF04553 EMBL:CT956041
RefSeq:XP_003356787.1 Ensembl:ENSSSCT00000022695 GeneID:100624279
KEGG:ssc:100624279 Uniprot:I3LB77
Length = 338
Score = 211 (79.3 bits), Expect = 4.9e-17, P = 4.9e-17
Identities = 39/70 (55%), Positives = 46/70 (65%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 114 RYKTELCRPFEENGACKYGDKCQFAHGIHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 172
Query: 76 CIFIH--EER 83
C FIH EER
Sbjct: 173 CHFIHNAEER 182
>MGI|MGI:107946 [details] [associations]
symbol:Zfp36l1 "zinc finger protein 36, C3H type-like 1"
species:10090 "Mus musculus" [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IDA]
[GO:0001570 "vasculogenesis" evidence=IMP] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=ISO] [GO:0006402 "mRNA catabolic process"
evidence=ISO] [GO:0006417 "regulation of translation" evidence=IMP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=ISO] [GO:0033077 "T cell differentiation
in thymus" evidence=IGI] [GO:0043488 "regulation of mRNA stability"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
MGI:MGI:107946 GO:GO:0005829 GO:GO:0005634 GO:GO:0006417
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003729
GO:GO:0017091 GO:GO:0033077 GO:GO:0001570 GO:GO:0043488
GO:GO:0000288 eggNOG:COG5063 CTD:677 HOGENOM:HOG000233479
HOVERGEN:HBG008483 OMA:HSYSFAG OrthoDB:EOG480HXD ChiTaRS:ZFP36L1
InterPro:IPR007635 Pfam:PF04553 EMBL:M58566 IPI:IPI00138335
PIR:B39590 RefSeq:NP_031590.1 UniGene:Mm.235132
ProteinModelPortal:P23950 SMR:P23950 STRING:P23950
PhosphoSite:P23950 PRIDE:P23950 Ensembl:ENSMUST00000021552
Ensembl:ENSMUST00000165114 GeneID:12192 KEGG:mmu:12192
InParanoid:P23950 NextBio:280591 Bgee:P23950 CleanEx:MM_ZFP36L1
Genevestigator:P23950 GermOnline:ENSMUSG00000021127 Uniprot:P23950
Length = 338
Score = 211 (79.3 bits), Expect = 4.9e-17, P = 4.9e-17
Identities = 39/70 (55%), Positives = 46/70 (65%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 114 RYKTELCRPFEENGACKYGDKCQFAHGIHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 172
Query: 76 CIFIH--EER 83
C FIH EER
Sbjct: 173 CHFIHNAEER 182
>RGD|62009 [details] [associations]
symbol:Zfp36l1 "zinc finger protein 36, C3H type-like 1"
species:10116 "Rattus norvegicus" [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=IEA;ISO] [GO:0001570 "vasculogenesis" evidence=IEA;ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IDA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006402
"mRNA catabolic process" evidence=IDA] [GO:0006417 "regulation of
translation" evidence=IEA;ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IMP]
[GO:0033077 "T cell differentiation in thymus" evidence=IEA;ISO]
[GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
RGD:62009 GO:GO:0005829 GO:GO:0005634 GO:GO:0006417 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003729 GO:GO:0017091
GO:GO:0033077 GO:GO:0001570 GO:GO:0006402 GO:GO:0043488
GO:GO:0000288 eggNOG:COG5063 CTD:677 HOGENOM:HOG000233479
HOVERGEN:HBG008483 OrthoDB:EOG480HXD InterPro:IPR007635 Pfam:PF04553
EMBL:X52590 EMBL:X86571 IPI:IPI00188182 PIR:S10471
RefSeq:NP_058868.1 UniGene:Rn.6142 ProteinModelPortal:P17431
SMR:P17431 MINT:MINT-1210346 STRING:P17431 PhosphoSite:P17431
GeneID:29344 KEGG:rno:29344 UCSC:RGD:62009 InParanoid:P17431
NextBio:608836 ArrayExpress:P17431 Genevestigator:P17431
GermOnline:ENSRNOG00000030024 Uniprot:P17431
Length = 338
Score = 211 (79.3 bits), Expect = 4.9e-17, P = 4.9e-17
Identities = 39/70 (55%), Positives = 46/70 (65%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 114 RYKTELCRPFEENGACKYGDKCQFAHGIHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 172
Query: 76 CIFIH--EER 83
C FIH EER
Sbjct: 173 CHFIHNAEER 182
>UNIPROTKB|P17431 [details] [associations]
symbol:Zfp36l1 "Zinc finger protein 36, C3H1 type-like 1"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 RGD:62009 GO:GO:0005829 GO:GO:0005634 GO:GO:0006417
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003729
GO:GO:0017091 GO:GO:0033077 GO:GO:0001570 GO:GO:0006402
GO:GO:0043488 GO:GO:0000288 eggNOG:COG5063 CTD:677
HOGENOM:HOG000233479 HOVERGEN:HBG008483 OrthoDB:EOG480HXD
InterPro:IPR007635 Pfam:PF04553 EMBL:X52590 EMBL:X86571
IPI:IPI00188182 PIR:S10471 RefSeq:NP_058868.1 UniGene:Rn.6142
ProteinModelPortal:P17431 SMR:P17431 MINT:MINT-1210346
STRING:P17431 PhosphoSite:P17431 GeneID:29344 KEGG:rno:29344
UCSC:RGD:62009 InParanoid:P17431 NextBio:608836 ArrayExpress:P17431
Genevestigator:P17431 GermOnline:ENSRNOG00000030024 Uniprot:P17431
Length = 338
Score = 211 (79.3 bits), Expect = 4.9e-17, P = 4.9e-17
Identities = 39/70 (55%), Positives = 46/70 (65%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 114 RYKTELCRPFEENGACKYGDKCQFAHGIHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 172
Query: 76 CIFIH--EER 83
C FIH EER
Sbjct: 173 CHFIHNAEER 182
>UNIPROTKB|F1MV20 [details] [associations]
symbol:F1MV20 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 GO:GO:0005737 GO:GO:0008270
GO:GO:0003676 GO:GO:0043488 GO:GO:0000288
GeneTree:ENSGT00530000063262 InterPro:IPR007635 Pfam:PF04553
OMA:PLAIQTH EMBL:DAAA02030674 IPI:IPI00695139
Ensembl:ENSBTAT00000004621 Uniprot:F1MV20
Length = 438
Score = 214 (80.4 bits), Expect = 6.8e-17, P = 6.8e-17
Identities = 39/74 (52%), Positives = 48/74 (64%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 149 RYKTELCRPFEESGTCKYGEKCQFAHGFHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 207
Query: 76 CIFIH--EEREISP 87
C FIH +ER +P
Sbjct: 208 CHFIHNADERRPAP 221
>RGD|1308913 [details] [associations]
symbol:Zfp36l2 "zinc finger protein 36, C3H type-like 2"
species:10116 "Rattus norvegicus" [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0033077 "T cell differentiation in thymus" evidence=ISO]
[GO:0043488 "regulation of mRNA stability" evidence=ISO]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
RGD:1308913 GO:GO:0008270 GO:GO:0003676
GeneTree:ENSGT00530000063262 OrthoDB:EOG480HXD InterPro:IPR007635
Pfam:PF04553 CTD:678 OMA:PLAIQTH IPI:IPI00553840
RefSeq:NP_001031703.1 Ensembl:ENSRNOT00000006725 GeneID:298765
KEGG:rno:298765 UCSC:RGD:1308913 Uniprot:D3ZHK9
Length = 482
Score = 214 (80.4 bits), Expect = 8.9e-17, P = 8.9e-17
Identities = 39/74 (52%), Positives = 48/74 (64%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 151 RYKTELCRPFEESGTCKYGEKCQFAHGFHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 209
Query: 76 CIFIH--EEREISP 87
C FIH +ER +P
Sbjct: 210 CHFIHNADERRPAP 223
>UNIPROTKB|J9NWC9 [details] [associations]
symbol:ZFP36L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 GeneTree:ENSGT00530000063262
InterPro:IPR007635 Pfam:PF04553 OMA:PLAIQTH EMBL:AAEX03007468
RefSeq:XP_003639394.1 Ensembl:ENSCAFT00000048010 GeneID:100856710
KEGG:cfa:100856710 Uniprot:J9NWC9
Length = 491
Score = 214 (80.4 bits), Expect = 9.3e-17, P = 9.3e-17
Identities = 39/74 (52%), Positives = 48/74 (64%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 157 RYKTELCRPFEESGTCKYGEKCQFAHGFHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 215
Query: 76 CIFIH--EEREISP 87
C FIH +ER +P
Sbjct: 216 CHFIHNADERRPAP 229
>UNIPROTKB|F1S5I0 [details] [associations]
symbol:ZFP36L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 GO:GO:0005737 GO:GO:0008270
GO:GO:0003676 GO:GO:0043488 GO:GO:0000288
GeneTree:ENSGT00530000063262 InterPro:IPR007635 Pfam:PF04553
OMA:PLAIQTH EMBL:CU694628 RefSeq:XP_003125238.1
Ensembl:ENSSSCT00000009263 GeneID:100513591 KEGG:ssc:100513591
ArrayExpress:F1S5I0 Uniprot:F1S5I0
Length = 493
Score = 214 (80.4 bits), Expect = 9.4e-17, P = 9.4e-17
Identities = 39/74 (52%), Positives = 48/74 (64%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 153 RYKTELCRPFEESGTCKYGEKCQFAHGFHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 211
Query: 76 CIFIH--EEREISP 87
C FIH +ER +P
Sbjct: 212 CHFIHNADERRPAP 225
>UNIPROTKB|P47974 [details] [associations]
symbol:ZFP36L2 "Zinc finger protein 36, C3H1 type-like 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488 "regulation of
mRNA stability" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=TAS] [GO:0008283 "cell proliferation"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 GO:GO:0005737
EMBL:CH471053 GO:GO:0046872 GO:GO:0003677 GO:GO:0008283
GO:GO:0008270 GO:GO:0003700 GO:GO:0003723 GO:GO:0043488
GO:GO:0000288 CleanEx:HS_BRF2 eggNOG:COG5063 HOGENOM:HOG000233479
HOVERGEN:HBG008483 OrthoDB:EOG480HXD InterPro:IPR007635
Pfam:PF04553 EMBL:U07802 EMBL:X78992 EMBL:AC010883 EMBL:BC005010
IPI:IPI00604786 PIR:S49147 RefSeq:NP_008818.3 UniGene:Hs.503093
UniGene:Hs.705738 PDB:1RGO PDBsum:1RGO ProteinModelPortal:P47974
SMR:P47974 IntAct:P47974 STRING:P47974 PhosphoSite:P47974
DMDM:146291085 PRIDE:P47974 DNASU:678 Ensembl:ENST00000282388
GeneID:678 KEGG:hsa:678 UCSC:uc002rsv.4 CTD:678
GeneCards:GC02M043449 HGNC:HGNC:1108 HPA:HPA047428 MIM:612053
neXtProt:NX_P47974 PharmGKB:PA35028 InParanoid:P47974 OMA:PLAIQTH
PhylomeDB:P47974 ChiTaRS:ZFP36L2 EvolutionaryTrace:P47974
GenomeRNAi:678 NextBio:2794 Bgee:P47974 CleanEx:HS_ZFP36L2
Genevestigator:P47974 GermOnline:ENSG00000152518 Uniprot:P47974
Length = 494
Score = 214 (80.4 bits), Expect = 9.4e-17, P = 9.4e-17
Identities = 39/74 (52%), Positives = 48/74 (64%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G C+Y KCQFAH EL T HP Y+T+LCR +H G+C +G R
Sbjct: 153 RYKTELCRPFEESGTCKYGEKCQFAHGFHELR-SLTRHPKYKTELCRTFHTIGFCPYGPR 211
Query: 76 CIFIH--EEREISP 87
C FIH +ER +P
Sbjct: 212 CHFIHNADERRPAP 225
>UNIPROTKB|F1LVT2 [details] [associations]
symbol:F1LVT2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000289 "nuclear-transcribed mRNA poly(A)
tail shortening" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005737 GO:GO:0008270 GO:GO:0017091 GO:GO:0000289
GeneTree:ENSGT00530000063262 IPI:IPI00362311
Ensembl:ENSRNOT00000050601 Uniprot:F1LVT2
Length = 490
Score = 213 (80.0 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 38/72 (52%), Positives = 46/72 (63%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G CRY KCQFAH EL + HP Y+T+ CR +H GYC +G+R
Sbjct: 141 RYKTELCRPFEENGTCRYGNKCQFAHGYHELRT-LSRHPKYKTEPCRTFHSIGYCPYGSR 199
Query: 76 CIFIHEEREISP 87
C FIH + E P
Sbjct: 200 CHFIHNQPEQLP 211
>UNIPROTKB|G3MWV8 [details] [associations]
symbol:ZFP36 "Tristetraprolin" species:9913 "Bos taurus"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0008270 GO:GO:0003676
GeneTree:ENSGT00530000063262 EMBL:DAAA02047057 EMBL:DAAA02047055
EMBL:DAAA02047056 Ensembl:ENSBTAT00000011308 Uniprot:G3MWV8
Length = 324
Score = 205 (77.2 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 38/78 (48%), Positives = 48/78 (61%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR E G CRY KCQFAH GEL + + HP Y+T+LC ++ G C +G+R
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGELR-QASRHPKYKTELCHKFYLQGRCPYGSR 159
Query: 76 CIFIHEERE-ISPPDAKH 92
C FIH E ++ P H
Sbjct: 160 CHFIHNPSEDLAAPGHPH 177
>UNIPROTKB|P53781 [details] [associations]
symbol:ZFP36 "Tristetraprolin" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0071889
"14-3-3 protein binding" evidence=ISS] [GO:0032680 "regulation of
tumor necrosis factor production" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0060213
"positive regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] [GO:0017091 "AU-rich element binding" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 GO:GO:0006950
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0017091
GO:GO:0006402 GO:GO:0071889 GO:GO:0010494 GO:GO:0060213
GO:GO:0070935 GO:GO:0032680 HOVERGEN:HBG008483 EMBL:L42319
IPI:IPI00698292 RefSeq:NP_776918.1 UniGene:Bt.3863
ProteinModelPortal:P53781 SMR:P53781 PRIDE:P53781 GeneID:282127
KEGG:bta:282127 CTD:7538 KO:K15308 NextBio:20805964 Uniprot:P53781
Length = 324
Score = 205 (77.2 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 38/78 (48%), Positives = 48/78 (61%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR E G CRY KCQFAH GEL + + HP Y+T+LC ++ G C +G+R
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGELR-QASRHPKYKTELCHKFYLQGRCPYGSR 159
Query: 76 CIFIHEERE-ISPPDAKH 92
C FIH E ++ P H
Sbjct: 160 CHFIHNPSEDLAAPGHPH 177
>UNIPROTKB|Q0VCR3 [details] [associations]
symbol:ZFP36 "Tristetraprolin" species:9913 "Bos taurus"
[GO:0071889 "14-3-3 protein binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0060213
"positive regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0050779 "RNA destabilization"
evidence=IEA] [GO:0050728 "negative regulation of inflammatory
response" evidence=IEA] [GO:0045638 "negative regulation of myeloid
cell differentiation" evidence=IEA] [GO:0035925 "mRNA 3'-UTR
AU-rich region binding" evidence=IEA] [GO:0032680 "regulation of
tumor necrosis factor production" evidence=IEA] [GO:0019957 "C-C
chemokine binding" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0007243 "intracellular protein kinase cascade"
evidence=IEA] [GO:0006950 "response to stress" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0005829
GO:GO:0005634 GO:GO:0006950 GO:GO:0050728 GO:GO:0008270
GO:GO:0003729 GO:GO:0007243 GO:GO:0017091 GO:GO:0000122
GO:GO:0010494 GO:GO:0060213 GO:GO:0000289 GO:GO:0045638
GO:GO:0070935 GeneTree:ENSGT00530000063262 GO:GO:0032680
GO:GO:0050779 HOVERGEN:HBG008483 IPI:IPI00698292 UniGene:Bt.3863
OMA:RRLPIFN EMBL:DAAA02047057 EMBL:DAAA02047055 EMBL:DAAA02047056
EMBL:BC120043 SMR:Q0VCR3 Ensembl:ENSBTAT00000066266 Uniprot:Q0VCR3
Length = 325
Score = 205 (77.2 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 38/78 (48%), Positives = 48/78 (61%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR E G CRY KCQFAH GEL + + HP Y+T+LC ++ G C +G+R
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGELR-QASRHPKYKTELCHKFYLQGRCPYGSR 159
Query: 76 CIFIHEERE-ISPPDAKH 92
C FIH E ++ P H
Sbjct: 160 CHFIHNPSEDLAAPGHPH 177
>UNIPROTKB|D0VE66 [details] [associations]
symbol:LOC100623625 "Tristetraprolin" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 eggNOG:COG5063 GeneTree:ENSGT00530000063262 CTD:7538
KO:K15308 OMA:RRLPIFN OrthoDB:EOG4S4PH4 EMBL:FP102918 EMBL:FP236263
EMBL:GU066778 EMBL:HM484335 EMBL:HM480487 RefSeq:NP_001161891.1
RefSeq:XP_003355955.1 UniGene:Ssc.28024 STRING:D0VE66
Ensembl:ENSSSCT00000011714 Ensembl:ENSSSCT00000026750
GeneID:100316849 GeneID:100623625 KEGG:ssc:100316849
KEGG:ssc:100623625 Uniprot:D0VE66
Length = 326
Score = 205 (77.2 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 38/78 (48%), Positives = 48/78 (61%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR E G CRY KCQFAH GEL + + HP Y+T+LC ++ G C +G+R
Sbjct: 102 RYKTELCRTFSESGRCRYGAKCQFAHGLGELR-QASRHPKYKTELCHKFYLQGRCPYGSR 160
Query: 76 CIFIHEERE-ISPPDAKH 92
C FIH E ++ P H
Sbjct: 161 CHFIHNPSEDLAAPGHPH 178
>UNIPROTKB|Q6S9E0 [details] [associations]
symbol:ZFP36 "Tristetraprolin" species:9940 "Ovis aries"
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0006950 "response to stress" evidence=ISS] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0017091 "AU-rich
element binding" evidence=ISS] [GO:0032680 "regulation of tumor
necrosis factor production" evidence=ISS] [GO:0060213 "positive
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=ISS] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISS] [GO:0071889 "14-3-3 protein binding" evidence=ISS]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 GO:GO:0006950 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0017091 GO:GO:0006402 GO:GO:0071889
GO:GO:0010494 GO:GO:0060213 GO:GO:0070935 GO:GO:0032680
HOVERGEN:HBG008483 CTD:7538 EMBL:AY462109 RefSeq:NP_001009765.1
UniGene:Oar.1075 ProteinModelPortal:Q6S9E0 SMR:Q6S9E0 GeneID:443283
Uniprot:Q6S9E0
Length = 325
Score = 204 (76.9 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 38/78 (48%), Positives = 47/78 (60%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR E G CRY KCQFAH GEL + HP Y+T+LC ++ G C +G+R
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGELRQP-SRHPKYKTELCHKFYLQGRCPYGSR 159
Query: 76 CIFIHEERE-ISPPDAKH 92
C FIH E ++ P H
Sbjct: 160 CHFIHNPSEDLAAPGHPH 177
>RGD|1559581 [details] [associations]
symbol:Zfp36l3 "zinc finger protein 36, C3H type-like 3"
species:10116 "Rattus norvegicus" [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=ISO] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0017091 "AU-rich element
binding" evidence=ISO] REFSEQ:XM_001053657 Ncbi:XP_001053657
Length = 722
Score = 213 (80.0 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 38/72 (52%), Positives = 46/72 (63%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR +E G CRY KCQFAH EL + HP Y+T+ CR +H GYC +G+R
Sbjct: 121 RYKTELCRPFEENGTCRYGNKCQFAHGYHELRT-LSRHPKYKTEPCRTFHSIGYCPYGSR 179
Query: 76 CIFIHEEREISP 87
C FIH + E P
Sbjct: 180 CHFIHNQPEQLP 191
>ZFIN|ZDB-GENE-050913-48 [details] [associations]
symbol:zgc:114130 "zgc:114130" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
ZFIN:ZDB-GENE-050913-48 GO:GO:0008270 GO:GO:0003676
GeneTree:ENSGT00530000063262 EMBL:BX927244 IPI:IPI00610779
Ensembl:ENSDART00000124803 Ensembl:ENSDART00000139068
Uniprot:F1QH59
Length = 394
Score = 207 (77.9 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 38/84 (45%), Positives = 50/84 (59%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR E G+C+Y KCQFAH P EL HP Y+T+ CR +H G+C +G R
Sbjct: 140 RYKTELCRTFAERGLCKYGGKCQFAHGPEELRD-LNRHPKYKTEPCRTFHSIGFCPYGIR 198
Query: 76 CIFIH---EEREISPPDAKHNPRI 96
C F+H +++ S P NP +
Sbjct: 199 CHFVHNAEDDQAQSRPQTS-NPTV 221
>ZFIN|ZDB-GENE-030131-5873 [details] [associations]
symbol:zfp36l2 "zinc finger protein 36, C3H
type-like 2" species:7955 "Danio rerio" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
ZFIN:ZDB-GENE-030131-5873 GO:GO:0008270 GO:GO:0003676
GeneTree:ENSGT00530000063262 InterPro:IPR007635 Pfam:PF04553
EMBL:CR932077 IPI:IPI00508201 Ensembl:ENSDART00000142674
ArrayExpress:F1QU82 Bgee:F1QU82 Uniprot:F1QU82
Length = 373
Score = 206 (77.6 bits), Expect = 3.0e-16, P = 3.0e-16
Identities = 38/83 (45%), Positives = 50/83 (60%)
Query: 2 ESLSQRTKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLC 61
E L Q+ + + + RYKTE CR +E G C+Y KCQFAH EL + HP Y+T+ C
Sbjct: 103 EMLQQKPGSQINSTRYKTELCRPFEENGSCKYGEKCQFAHGYHELR-NLSRHPKYKTEPC 161
Query: 62 RAYHKAGYCSFGARCIFIHEERE 84
R +H G+C +G RC FIH E
Sbjct: 162 RTFHTIGFCPYGPRCHFIHNADE 184
>MGI|MGI:99180 [details] [associations]
symbol:Zfp36 "zinc finger protein 36" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO;IMP] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IDA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IDA]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=ISO;IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IGI] [GO:0006402 "mRNA catabolic process"
evidence=ISO] [GO:0006950 "response to stress" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=ISO] [GO:0017091 "AU-rich
element binding" evidence=ISO;IDA] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0019957 "C-C chemokine binding"
evidence=ISO] [GO:0032680 "regulation of tumor necrosis factor
production" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=IDA] [GO:0043488 "regulation of mRNA stability"
evidence=IDA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0050728 "negative regulation of inflammatory
response" evidence=IMP] [GO:0050779 "RNA destabilization"
evidence=IMP] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071889 "14-3-3 protein binding" evidence=ISO]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
MGI:MGI:99180 GO:GO:0005829 GO:GO:0005634 GO:GO:0006950
GO:GO:0046872 GO:GO:0003677 GO:GO:0050728 GO:GO:0008270
GO:GO:0007243 GO:GO:0000122 GO:GO:0071889 GO:GO:0010494
GO:GO:0060213 eggNOG:COG5063 GO:GO:0000289 GO:GO:0045638
GO:GO:0070935 GO:GO:0032680 GO:GO:0035925 GO:GO:0050779
HOGENOM:HOG000233479 HOVERGEN:HBG008483 CTD:7538 KO:K15308
OMA:RRLPIFN OrthoDB:EOG4S4PH4 EMBL:M57422 EMBL:M58691 EMBL:X14678
EMBL:M58565 EMBL:L42317 EMBL:BC021391 IPI:IPI00132695 PIR:A36600
PIR:S04743 RefSeq:NP_035886.1 UniGene:Mm.389856 PDB:1M9O
PDBsum:1M9O ProteinModelPortal:P22893 SMR:P22893 IntAct:P22893
MINT:MINT-225240 STRING:P22893 PhosphoSite:P22893 PRIDE:P22893
Ensembl:ENSMUST00000051241 GeneID:22695 KEGG:mmu:22695
InParanoid:P22893 EvolutionaryTrace:P22893 NextBio:303151
Bgee:P22893 CleanEx:MM_ZFP36 Genevestigator:P22893
GermOnline:ENSMUSG00000044786 Uniprot:P22893
Length = 319
Score = 202 (76.2 bits), Expect = 3.9e-16, P = 3.9e-16
Identities = 38/78 (48%), Positives = 47/78 (60%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR E G CRY KCQFAH GEL + HP Y+T+LC ++ G C +G+R
Sbjct: 95 RYKTELCRTYSESGRCRYGAKCQFAHGLGELR-QANRHPKYKTELCHKFYLQGRCPYGSR 153
Query: 76 CIFIHEERE-ISPPDAKH 92
C FIH E ++ P H
Sbjct: 154 CHFIHNPTEDLALPGQPH 171
>UNIPROTKB|P26651 [details] [associations]
symbol:ZFP36 "Tristetraprolin" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0007243 "intracellular
protein kinase cascade" evidence=IEA] [GO:0035925 "mRNA 3'-UTR
AU-rich region binding" evidence=IEA] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=IEA]
[GO:0050728 "negative regulation of inflammatory response"
evidence=IEA] [GO:0050779 "RNA destabilization" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IMP;IDA] [GO:0006402
"mRNA catabolic process" evidence=IDA] [GO:0060213 "positive
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0019957 "C-C chemokine binding"
evidence=IPI] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0019901 "protein kinase binding"
evidence=IPI] [GO:0006950 "response to stress" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0071889
"14-3-3 protein binding" evidence=IDA] [GO:0032680 "regulation of
tumor necrosis factor production" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA] [GO:1900153
"positive regulation of nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISS] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=ISS] [GO:0003727 "single-stranded RNA binding"
evidence=TAS] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA;TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0005829
GO:GO:0005634 GO:GO:0010467 GO:GO:0006950 GO:GO:0046872
GO:GO:0003677 GO:GO:0050728 GO:GO:0008270 GO:GO:0003729
GO:GO:0003727 GO:GO:0007243 GO:GO:0017091 GO:GO:0000122
GO:GO:0006402 GO:GO:0071889 GO:GO:0010494 GO:GO:0060213
eggNOG:COG5063 GO:GO:0000289 GO:GO:0045638 GO:GO:0070935
GO:GO:0032680 GO:GO:0050779 HOGENOM:HOG000233479 HOVERGEN:HBG008483
CTD:7538 KO:K15308 EMBL:M92843 EMBL:M92844 EMBL:M63625
EMBL:AK314042 EMBL:AY771351 EMBL:BC009693 IPI:IPI00000893
PIR:S34427 RefSeq:NP_003398.2 UniGene:Hs.534052
ProteinModelPortal:P26651 SMR:P26651 DIP:DIP-29845N IntAct:P26651
MINT:MINT-1171915 STRING:P26651 PhosphoSite:P26651 DMDM:136471
PRIDE:P26651 DNASU:7538 Ensembl:ENST00000248673 GeneID:7538
KEGG:hsa:7538 UCSC:uc002olh.1 GeneCards:GC19P039897 HGNC:HGNC:12862
HPA:HPA006009 MIM:190700 neXtProt:NX_P26651 PharmGKB:PA37451
InParanoid:P26651 OMA:RRLPIFN OrthoDB:EOG4S4PH4 PhylomeDB:P26651
ChiTaRS:ZFP36 GenomeRNAi:7538 NextBio:29497 Bgee:P26651
CleanEx:HS_ZFP36 Genevestigator:P26651 GermOnline:ENSG00000128016
Uniprot:P26651
Length = 326
Score = 201 (75.8 bits), Expect = 5.9e-16, P = 5.9e-16
Identities = 39/80 (48%), Positives = 48/80 (60%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR E G CRY KCQFAH GEL + HP Y+T+LC ++ G C +G+R
Sbjct: 103 RYKTELCRTFSESGRCRYGAKCQFAHGLGELR-QANRHPKYKTELCHKFYLQGRCPYGSR 161
Query: 76 CIFIHEERE-ISPPDAKHNP 94
C FIH E ++ P H P
Sbjct: 162 CHFIHNPSEDLAAPG--HPP 179
>WB|WBGene00009532 [details] [associations]
symbol:ccch-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0016529 "sarcoplasmic reticulum"
evidence=IDA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0008270 GO:GO:0003676 GO:GO:0016529 HSSP:P22893
eggNOG:COG5063 GeneTree:ENSGT00530000063262 EMBL:Z74033 PIR:T21954
RefSeq:NP_505926.2 ProteinModelPortal:Q20155 SMR:Q20155
PaxDb:Q20155 EnsemblMetazoa:F38B7.1a GeneID:179584
KEGG:cel:CELE_F38B7.1 UCSC:F38B7.1a CTD:179584 WormBase:F38B7.1a
HOGENOM:HOG000022515 InParanoid:Q20155 OMA:PCSSNDS NextBio:906034
ArrayExpress:Q20155 Uniprot:Q20155
Length = 460
Score = 205 (77.2 bits), Expect = 7.6e-16, P = 7.6e-16
Identities = 45/121 (37%), Positives = 65/121 (53%)
Query: 14 NPR-YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPK-FTHHPHYRTQLCRAYHKAGYCS 71
NP+ YKTE CR+ + G C Y +CQ+AH GEL + HP Y+T+ C+++H++GYC
Sbjct: 195 NPKLYKTELCRSWMDHGRCNYGERCQYAH--GELEKRPVPRHPKYKTEACQSFHQSGYCP 252
Query: 72 FGARCIFIHEEREISPPDAKHNPRIIYVNPEYEACCTRDTQHIRRYERHNATNQPAAPAQ 131
+G RC FIH E PP A+ Y P + T + + HN T + P Q
Sbjct: 253 YGPRCHFIHNE----PPSAQSQ----YSTPISTPVPHQTTPSLYASQYHNVTMKQQQPTQ 304
Query: 132 S 132
+
Sbjct: 305 N 305
>DICTYBASE|DDB_G0285973 [details] [associations]
symbol:DDB_G0285973 "Butyrate response factor 2"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 dictyBase:DDB_G0285973 GO:GO:0008270 GO:GO:0003676
EMBL:AAFI02000082 eggNOG:COG5063 RefSeq:XP_637949.2
ProteinModelPortal:Q54MG5 SMR:Q54MG5 EnsemblProtists:DDB0218764
GeneID:8625376 KEGG:ddi:DDB_G0285973 InParanoid:Q54MG5 OMA:WSSDEAS
Uniprot:Q54MG5
Length = 437
Score = 204 (76.9 bits), Expect = 8.5e-16, P = 8.5e-16
Identities = 35/65 (53%), Positives = 43/65 (66%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR+ E GVCRY LKCQFAH EL HP Y+T+ C+ ++ G C +G+R
Sbjct: 195 RYKTELCRSFQETGVCRYGLKCQFAHGRDELR-SVMRHPKYKTETCKTFYSIGSCPYGSR 253
Query: 76 CIFIH 80
C FIH
Sbjct: 254 CRFIH 258
>FB|FBgn0011837 [details] [associations]
symbol:Tis11 "Tis11 homolog" species:7227 "Drosophila
melanogaster" [GO:0003677 "DNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=NAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0010629 "negative regulation of gene expression" evidence=IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0005634
GO:GO:0016246 GO:GO:0046872 GO:GO:0003677 EMBL:AE014298
GO:GO:0008270 GO:GO:0003730 eggNOG:COG5063
GeneTree:ENSGT00530000063262 EMBL:U13397 EMBL:X81194
RefSeq:NP_511141.2 RefSeq:NP_727633.1 UniGene:Dm.4329
ProteinModelPortal:P47980 SMR:P47980 MINT:MINT-914241 STRING:P47980
PaxDb:P47980 EnsemblMetazoa:FBtr0073683 EnsemblMetazoa:FBtr0333756
GeneID:32222 KEGG:dme:Dmel_CG4070 CTD:32222 FlyBase:FBgn0011837
InParanoid:P47980 OMA:MNTSRYK OrthoDB:EOG47WM4T PhylomeDB:P47980
GenomeRNAi:32222 NextBio:777464 Bgee:P47980 Uniprot:P47980
Length = 436
Score = 201 (75.8 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 35/70 (50%), Positives = 44/70 (62%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTH-HPHYRTQLCRAYHKAGYCSFGA 74
RYKTE CR +E G C+Y KCQFAH EL + H HP Y+T+ CR +H G+C +G
Sbjct: 135 RYKTELCRPFEEAGECKYGEKCQFAHGSHEL--RNVHRHPKYKTEYCRTFHSVGFCPYGP 192
Query: 75 RCIFIHEERE 84
RC F+H E
Sbjct: 193 RCHFVHNADE 202
>UNIPROTKB|E2RKS9 [details] [associations]
symbol:ZFP36 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071889 "14-3-3 protein binding"
evidence=IEA] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0060213 "positive regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0050779 "RNA destabilization" evidence=IEA] [GO:0050728
"negative regulation of inflammatory response" evidence=IEA]
[GO:0045638 "negative regulation of myeloid cell differentiation"
evidence=IEA] [GO:0035925 "mRNA 3'-UTR AU-rich region binding"
evidence=IEA] [GO:0032680 "regulation of tumor necrosis factor
production" evidence=IEA] [GO:0019957 "C-C chemokine binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0006950
"response to stress" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005829 GO:GO:0005634
GO:GO:0006950 GO:GO:0050728 GO:GO:0008270 GO:GO:0003729
GO:GO:0007243 GO:GO:0017091 GO:GO:0000122 GO:GO:0010494
GO:GO:0060213 GO:GO:0000289 GO:GO:0045638 GO:GO:0070935
GeneTree:ENSGT00530000063262 GO:GO:0032680 GO:GO:0050779
OMA:RRLPIFN EMBL:AAEX03000957 Ensembl:ENSCAFT00000008910
Uniprot:E2RKS9
Length = 324
Score = 194 (73.4 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 35/77 (45%), Positives = 47/77 (61%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR E G CRY KCQFAH GEL + + HP Y+T++C ++ G C +G+R
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGELR-QASRHPKYKTKVCHKFYLQGGCPYGSR 159
Query: 76 CIFIHEEREISPPDAKH 92
C FI +++ P H
Sbjct: 160 CHFIPFPEDLAAPGHPH 176
>UNIPROTKB|J9NTC7 [details] [associations]
symbol:ZFP36 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00530000063262 EMBL:AAEX03000957
Ensembl:ENSCAFT00000042970 Uniprot:J9NTC7
Length = 294
Score = 186 (70.5 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 36/75 (48%), Positives = 46/75 (61%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGAR 75
RYKTE CR E G CRY KCQFAH GEL + + HP Y+T++C ++ G C +G+R
Sbjct: 106 RYKTELCRTFSESGRCRYGAKCQFAHGLGELR-QASRHPKYKTKVCHKFYLQGGCPYGSR 164
Query: 76 CIFIHEEREISPPDA 90
C FI +I P A
Sbjct: 165 CHFIPFPAKIWLPRA 179
>POMBASE|SPBC1718.07c [details] [associations]
symbol:zfs1 "CCCH tandem zinc finger protein, human
Tristetraprolin homolog Zfs1, involved in mRNA catabolism"
species:4896 "Schizosaccharomyces pombe" [GO:0000750
"pheromone-dependent signal transduction involved in conjugation
with cellular fusion" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006402 "mRNA catabolic process"
evidence=IMP] [GO:0007093 "mitotic cell cycle checkpoint"
evidence=IMP] [GO:0007094 "mitotic spindle assembly checkpoint"
evidence=IGI] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0010972 "negative regulation of G2/M transition of mitotic cell
cycle" evidence=IMP] [GO:0031030 "negative regulation of septation
initiation signaling cascade" evidence=IGI] [GO:0031137 "regulation
of conjugation with cellular fusion" evidence=IGI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045839
"negative regulation of mitosis" evidence=IMP] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 PomBase:SPBC1718.07c
GO:GO:0005829 GO:GO:0005634 GO:GO:0051301 GO:GO:0007094
GO:GO:0031030 GO:GO:0046872 EMBL:CU329671 GO:GO:0008270
GenomeReviews:CU329671_GR GO:GO:0000750 GO:GO:0006402 GO:GO:0031137
eggNOG:COG5063 GO:GO:0010972 OrthoDB:EOG4W3WXK GO:GO:0035925
EMBL:D49913 PIR:T50335 RefSeq:NP_596453.1 ProteinModelPortal:P47979
SMR:P47979 MINT:MINT-4690404 STRING:P47979
EnsemblFungi:SPBC1718.07c.1 GeneID:2539958 KEGG:spo:SPBC1718.07c
NextBio:20801101 Uniprot:P47979
Length = 404
Score = 180 (68.4 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 32/66 (48%), Positives = 41/66 (62%)
Query: 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARC 76
YKTE C+N G CRY KCQFAH EL HP Y+++ CR++ GYC +G RC
Sbjct: 327 YKTEPCKNWQISGTCRYGSKCQFAHGNQELKEP-PRHPKYKSERCRSFMMYGYCPYGLRC 385
Query: 77 IFIHEE 82
F+H+E
Sbjct: 386 CFLHDE 391
>SGD|S000002558 [details] [associations]
symbol:CTH1 "Member of the CCCH zinc finger family"
species:4932 "Saccharomyces cerevisiae" [GO:0006879 "cellular iron
ion homeostasis" evidence=IGI] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IC] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=IGI] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=ISS] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 SGD:S000002558
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0003729
EMBL:BK006938 GO:GO:0006879 GO:GO:0000956 eggNOG:COG5063
EMBL:L42133 EMBL:Z50046 EMBL:AY557690 PIR:S57977 RefSeq:NP_010435.1
ProteinModelPortal:P47976 SMR:P47976 DIP:DIP-1784N IntAct:P47976
MINT:MINT-385004 STRING:P47976 EnsemblFungi:YDR151C GeneID:851729
KEGG:sce:YDR151C CYGD:YDR151c GeneTree:ENSGT00530000063262
HOGENOM:HOG000001038 OMA:EIEEYYI OrthoDB:EOG4W3WXK NextBio:969448
Genevestigator:P47976 GermOnline:YDR151C Uniprot:P47976
Length = 325
Score = 154 (59.3 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 31/71 (43%), Positives = 42/71 (59%)
Query: 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPH-YRTQLCRAYHKAGYCSFGAR 75
YKTE C + G C+Y KCQFAH EL KF + YRT+ C + K GYC +G R
Sbjct: 205 YKTELCESFTIKGYCKYGNKCQFAHGLNEL--KFKKKSNNYRTKPCINWSKLGYCPYGKR 262
Query: 76 CIFIH-EEREI 85
C F H +++++
Sbjct: 263 CCFKHGDDKDV 273
>SGD|S000004126 [details] [associations]
symbol:TIS11 "mRNA-binding protein expressed during iron
starvation" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0006879 "cellular iron
ion homeostasis" evidence=IMP] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 SGD:S000004126 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0008270 GO:GO:0003729
EMBL:BK006945 GO:GO:0006879 EMBL:X91258 EMBL:U53881 GO:GO:0000932
GO:GO:0000956 eggNOG:COG5063 GeneTree:ENSGT00530000063262
HOGENOM:HOG000001038 OrthoDB:EOG4W3WXK EMBL:S76619 EMBL:L42134
EMBL:Z73308 EMBL:AY558210 PIR:S59328 RefSeq:NP_013237.1
ProteinModelPortal:P47977 SMR:P47977 DIP:DIP-5614N IntAct:P47977
MINT:MINT-504800 STRING:P47977 EnsemblFungi:YLR136C GeneID:850827
KEGG:sce:YLR136C CYGD:YLR136c NextBio:967088 Genevestigator:P47977
GermOnline:YLR136C Uniprot:P47977
Length = 285
Score = 152 (58.6 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 31/71 (43%), Positives = 42/71 (59%)
Query: 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARC 76
YKTE C + G C Y KCQFAH GEL K + ++RT+ C + K GYC +G RC
Sbjct: 170 YKTELCESFTLKGSCPYGSKCQFAHGLGELKVKKSCK-NFRTKPCVNWEKLGYCPYGRRC 228
Query: 77 IFIH-EEREIS 86
F H ++ +I+
Sbjct: 229 CFKHGDDNDIA 239
>WB|WBGene00009537 [details] [associations]
symbol:ccch-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0009792
GO:GO:0008270 GO:GO:0003676 eggNOG:COG5063
GeneTree:ENSGT00530000063262 EMBL:Z82267 HOGENOM:HOG000114059
PIR:T21961 RefSeq:NP_502931.1 ProteinModelPortal:O45491 SMR:O45491
IntAct:O45491 STRING:O45491 EnsemblMetazoa:F38C2.5 GeneID:178454
KEGG:cel:CELE_F38C2.5 UCSC:F38C2.5 CTD:178454 WormBase:F38C2.5
InParanoid:O45491 NextBio:901202 Uniprot:O45491
Length = 186
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 30/82 (36%), Positives = 43/82 (52%)
Query: 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKF----THHPHYRTQLCRAYHKAGYCSF 72
+KT C+ C Y +C+FAH EL K +HP Y+T LC + + G+C +
Sbjct: 73 FKTALCKTFQLTRACSYGEQCKFAHSVEELQLKQKNRGVNHPKYKTVLCDNFSRTGHCKY 132
Query: 73 GARCIFIHEEREISPPDAKHNP 94
G +C FIH R + P A+ NP
Sbjct: 133 GTKCQFIH--RAVEPTPAQ-NP 151
Score = 97 (39.2 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 4 LSQRTKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLP 48
L Q+ + + +P+YKT C N G C+Y KCQF H E P
Sbjct: 104 LKQKNRGVN-HPKYKTVLCDNFSRTGHCKYGTKCQFIHRAVEPTP 147
>CGD|CAL0004295 [details] [associations]
symbol:orf19.5334 species:5476 "Candida albicans" [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006879 "cellular iron
ion homeostasis" evidence=IEA] [GO:0000956 "nuclear-transcribed
mRNA catabolic process" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 CGD:CAL0004295
GO:GO:0008270 GO:GO:0003676 EMBL:AACQ01000059 EMBL:AACQ01000058
eggNOG:COG5063 RefSeq:XP_717058.1 RefSeq:XP_717137.1
ProteinModelPortal:Q5A5R5 GeneID:3641257 GeneID:3641293
KEGG:cal:CaO19.12794 KEGG:cal:CaO19.5334 Uniprot:Q5A5R5
Length = 203
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 30/73 (41%), Positives = 39/73 (53%)
Query: 8 TKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKA 67
TK + YKTE C + + GVC Y+ KCQFAH EL P +R++ C + K
Sbjct: 130 TKTQINTQLYKTELCASFMKTGVCPYANKCQFAHGENEL-KHVERPPKWRSKPCANWTKY 188
Query: 68 GYCSFGARCIFIH 80
G C +G RC F H
Sbjct: 189 GSCRYGNRCCFKH 201
>WB|WBGene00013794 [details] [associations]
symbol:dct-13 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0008270 GO:GO:0003676
eggNOG:COG5063 GeneTree:ENSGT00530000063262 EMBL:AL117204
HOGENOM:HOG000114669 PIR:T31489 RefSeq:NP_503017.1
ProteinModelPortal:Q9U2V4 SMR:Q9U2V4 STRING:Q9U2V4
EnsemblMetazoa:Y116A8C.17 GeneID:178476 KEGG:cel:CELE_Y116A8C.17
UCSC:Y116A8C.17 CTD:178476 WormBase:Y116A8C.17 InParanoid:Q9U2V4
NextBio:901284 Uniprot:Q9U2V4
Length = 205
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFT--HHPHYRTQLCRAYHKAGYCSFGA 74
+KT C + C Y C+FAH EL + T +H +Y+T LC + GYC +GA
Sbjct: 93 FKTSLCLSHKRGKTCIYGEACKFAHGVHELRCQQTTRNHRNYKTVLCDKFTTTGYCKYGA 152
Query: 75 RCIFIHEEREISP 87
RC FIH + +P
Sbjct: 153 RCQFIHRSMDTTP 165
>TAIR|locus:2033384 [details] [associations]
symbol:AT1G66810 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AC013288 IPI:IPI00526106 RefSeq:NP_176853.1
UniGene:At.70746 HSSP:P22893 ProteinModelPortal:Q9C9N3 SMR:Q9C9N3
PaxDb:Q9C9N3 PRIDE:Q9C9N3 EnsemblPlants:AT1G66810.1 GeneID:842999
KEGG:ath:AT1G66810 TAIR:At1g66810 eggNOG:COG5063
HOGENOM:HOG000238120 InParanoid:Q9C9N3 OMA:ELNEHYE PhylomeDB:Q9C9N3
ProtClustDB:CLSN2681801 Genevestigator:Q9C9N3 Uniprot:Q9C9N3
Length = 310
Score = 145 (56.1 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 28/63 (44%), Positives = 32/63 (50%)
Query: 18 KTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCI 77
KTE C E G C Y CQFAH EL P HP Y+T++CR C +G RC
Sbjct: 234 KTELCNKWQETGACCYGDNCQFAHGIDELRPVI-RHPRYKTEVCRMMVTGAMCPYGHRCH 292
Query: 78 FIH 80
F H
Sbjct: 293 FRH 295
>WB|WBGene00003864 [details] [associations]
symbol:oma-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0048599 "oocyte development" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] [GO:0001556 "oocyte maturation" evidence=IGI]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0009792 GO:GO:0005813 GO:GO:0006915 GO:GO:0008270
GO:GO:0003676 GO:GO:0001556 HSSP:P22893 GO:GO:0043186
GeneTree:ENSGT00530000063262 EMBL:Z54236 EMBL:Z54235 PIR:T19155
RefSeq:NP_501542.1 ProteinModelPortal:G5EC86 SMR:G5EC86
IntAct:G5EC86 EnsemblMetazoa:C09G9.6.1 EnsemblMetazoa:C09G9.6.2
GeneID:177703 KEGG:cel:CELE_C09G9.6 CTD:177703 WormBase:C09G9.6
OMA:LLEDIAF NextBio:898006 Uniprot:G5EC86
Length = 407
Score = 146 (56.5 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 42/132 (31%), Positives = 62/132 (46%)
Query: 6 QRTKAILLNPR-YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTH---HPHYRTQLC 61
+R A + P YKT C+ E C ++ C+FAH EL P F + Y+T+LC
Sbjct: 101 RRGLARMQKPESYKTVICQAWLESKTCSFADNCRFAHGEEELRPTFVEPLQNNKYKTKLC 160
Query: 62 RAYHKAGYCSFGARCIFIHEEREISPPDAKHNPRIIYVNPEYEACCTRDTQHIRRYERHN 121
Y G C +G RC+FIH + P +++ V+ + RD + E+H
Sbjct: 161 DKYTTTGLCPYGKRCLFIHPDH--GPNAYIRADKLLEVSQRHALADIRD-----QMEQHI 213
Query: 122 ATN-QPAAPAQS 132
TN + AAP S
Sbjct: 214 MTNGRIAAPPLS 225
>UNIPROTKB|G5EC86 [details] [associations]
symbol:oma-1 "Protein OMA-1" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0009792 GO:GO:0005813 GO:GO:0006915 GO:GO:0008270
GO:GO:0003676 GO:GO:0001556 HSSP:P22893 GO:GO:0043186
GeneTree:ENSGT00530000063262 EMBL:Z54236 EMBL:Z54235 PIR:T19155
RefSeq:NP_501542.1 ProteinModelPortal:G5EC86 SMR:G5EC86
IntAct:G5EC86 EnsemblMetazoa:C09G9.6.1 EnsemblMetazoa:C09G9.6.2
GeneID:177703 KEGG:cel:CELE_C09G9.6 CTD:177703 WormBase:C09G9.6
OMA:LLEDIAF NextBio:898006 Uniprot:G5EC86
Length = 407
Score = 146 (56.5 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 42/132 (31%), Positives = 62/132 (46%)
Query: 6 QRTKAILLNPR-YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTH---HPHYRTQLC 61
+R A + P YKT C+ E C ++ C+FAH EL P F + Y+T+LC
Sbjct: 101 RRGLARMQKPESYKTVICQAWLESKTCSFADNCRFAHGEEELRPTFVEPLQNNKYKTKLC 160
Query: 62 RAYHKAGYCSFGARCIFIHEEREISPPDAKHNPRIIYVNPEYEACCTRDTQHIRRYERHN 121
Y G C +G RC+FIH + P +++ V+ + RD + E+H
Sbjct: 161 DKYTTTGLCPYGKRCLFIHPDH--GPNAYIRADKLLEVSQRHALADIRD-----QMEQHI 213
Query: 122 ATN-QPAAPAQS 132
TN + AAP S
Sbjct: 214 MTNGRIAAPPLS 225
>WB|WBGene00013319 [details] [associations]
symbol:ccch-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0009792 EMBL:Z99281 GO:GO:0008270 GO:GO:0000003
GO:GO:0003676 eggNOG:COG5063 GeneTree:ENSGT00530000063262
PIR:T27239 RefSeq:NP_502805.1 ProteinModelPortal:O18251 SMR:O18251
STRING:O18251 EnsemblMetazoa:Y57G11C.25 GeneID:178412
KEGG:cel:CELE_Y57G11C.25 UCSC:Y57G11C.25 CTD:178412
WormBase:Y57G11C.25 HOGENOM:HOG000114059 InParanoid:O18251
NextBio:901036 Uniprot:O18251
Length = 199
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 29/85 (34%), Positives = 42/85 (49%)
Query: 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTH----HPHYRTQLCRAYHKAGYCSF 72
+KT C+ C Y +C+FAH EL K + +P Y+T LC + G+C +
Sbjct: 69 FKTALCKTFQLTKACSYGEQCKFAHSVEELQLKHQNLGINNPKYKTVLCDNFSTTGHCKY 128
Query: 73 GARCIFIHEEREISPPDAK-HNPRI 96
G +C FIH R + P K NP +
Sbjct: 129 GTKCQFIH--RTVEPASLKIQNPLV 151
Score = 94 (38.1 bits), Expect = 0.00086, P = 0.00086
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 14 NPRYKTEFCRNIDELGVCRYSLKCQFAHHPGE 45
NP+YKT C N G C+Y KCQF H E
Sbjct: 109 NPKYKTVLCDNFSTTGHCKYGTKCQFIHRTVE 140
>TAIR|locus:2199352 [details] [associations]
symbol:AT1G68200 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 EMBL:AC016447 HSSP:P22893
eggNOG:COG5063 HOGENOM:HOG000238120 EMBL:DQ446410 EMBL:DQ056514
EMBL:BT026077 IPI:IPI00524596 IPI:IPI00846853 PIR:D96705
RefSeq:NP_001077792.1 RefSeq:NP_176987.1 UniGene:At.52430
ProteinModelPortal:Q9C9F5 SMR:Q9C9F5 PaxDb:Q9C9F5 PRIDE:Q9C9F5
EnsemblPlants:AT1G68200.1 GeneID:843149 KEGG:ath:AT1G68200
GeneFarm:2969 TAIR:At1g68200 InParanoid:Q9C9F5 OMA:SVMENED
PhylomeDB:Q9C9F5 ProtClustDB:CLSN2682260 Genevestigator:Q9C9F5
Uniprot:Q9C9F5
Length = 308
Score = 143 (55.4 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 29/67 (43%), Positives = 33/67 (49%)
Query: 18 KTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCI 77
KTE C E G C Y CQFAH EL P HP Y+T++CR C +G RC
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELRPVI-RHPRYKTEVCRMVLAGDNCPYGHRCH 282
Query: 78 FIHEERE 84
F H E
Sbjct: 283 FRHSLSE 289
>WB|WBGene00003228 [details] [associations]
symbol:mex-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0001708 "cell fate specification" evidence=IMP]
[GO:0030010 "establishment of cell polarity" evidence=IMP]
[GO:0001704 "formation of primary germ layer" evidence=IMP]
[GO:0009880 "embryonic pattern specification" evidence=IGI;IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] [GO:0003674 "molecular_function" evidence=NAS]
[GO:0003723 "RNA binding" evidence=ISS] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0001708
GO:GO:0009792 GO:GO:0002009 GO:GO:0008270 GO:GO:0000003
GO:GO:0003723 GO:GO:0009880 GO:GO:0030010 EMBL:AL023828 HSSP:P22893
GO:GO:0043186 GeneTree:ENSGT00530000063262 GO:GO:0001704 CTD:174836
EMBL:U81043 EMBL:Z66516 PIR:T26124 RefSeq:NP_001254325.1
UniGene:Cel.7263 ProteinModelPortal:G5ECB9 SMR:G5ECB9 IntAct:G5ECB9
EnsemblMetazoa:W03C9.7a.1 EnsemblMetazoa:W03C9.7a.2
EnsemblMetazoa:W03C9.7a.3 GeneID:174836 KEGG:cel:CELE_W03C9.7
WormBase:W03C9.7a OMA:HVERNQT NextBio:885712 Uniprot:G5ECB9
Length = 494
Score = 143 (55.4 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 29/75 (38%), Positives = 38/75 (50%)
Query: 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELL----PKFTHHPHYRTQLCRAYHKAGYCSF 72
+KT C G C Y C+FAH EL P+ HP Y+TQLC + G C +
Sbjct: 139 FKTALCDAFKRSGSCPYGEACRFAHGENELRMPSQPRGKAHPKYKTQLCDKFSNFGQCPY 198
Query: 73 GARCIFIHEEREISP 87
G RC FIH+ ++ P
Sbjct: 199 GPRCQFIHKLKKGLP 213
>WB|WBGene00003865 [details] [associations]
symbol:oma-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0048599 "oocyte development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] [GO:0001556 "oocyte maturation" evidence=IGI]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0009792 GO:GO:0005813 GO:GO:0008270 GO:GO:0003676
EMBL:FO080486 GO:GO:0001556 eggNOG:COG5063 GO:GO:0043186
GeneTree:ENSGT00530000063262 PIR:T28994 RefSeq:NP_505069.1
ProteinModelPortal:Q23359 SMR:Q23359 DIP:DIP-26006N IntAct:Q23359
MINT:MINT-251688 STRING:Q23359 PaxDb:Q23359
EnsemblMetazoa:ZC513.6.1 EnsemblMetazoa:ZC513.6.2 GeneID:179183
KEGG:cel:CELE_ZC513.6 UCSC:ZC513.6 CTD:179183 WormBase:ZC513.6
HOGENOM:HOG000016873 InParanoid:Q23359 OMA:HIMTGGR NextBio:904278
Uniprot:Q23359
Length = 393
Score = 139 (54.0 bits), Expect = 8.4e-09, P = 8.4e-09
Identities = 38/122 (31%), Positives = 52/122 (42%)
Query: 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTH---HPHYRTQLCRAYHKAGYCSFG 73
YKT C+ E C ++ C+FAH EL P + YRT+LC Y G C +G
Sbjct: 106 YKTVICQAWLESKTCAFAENCRFAHGEEELRPSLIEARQNNKYRTKLCDKYTTTGLCPYG 165
Query: 74 ARCIFIHEEREISPPDAKHNPRIIYVNPEYEACCTRDTQHIRRYERH--NATNQPAAPAQ 131
RC+FIH + P ++ V+ + RD + E H N A P Q
Sbjct: 166 KRCLFIHPDN--GPNAYIRADKLFEVSQRHALADLRD-----QMEHHIMNGGRSTAGPQQ 218
Query: 132 SD 133
D
Sbjct: 219 FD 220
>WB|WBGene00003388 [details] [associations]
symbol:moe-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0048599 "oocyte development"
evidence=IMP] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0008270 GO:GO:0003676 GO:GO:0048599 HSSP:P22893
eggNOG:COG5063 GeneTree:ENSGT00530000063262 EMBL:Z81521
HOGENOM:HOG000016873 PIR:T21620 RefSeq:NP_496795.1
UniGene:Cel.15255 ProteinModelPortal:Q9XV46 SMR:Q9XV46
DIP:DIP-25142N IntAct:Q9XV46 MINT:MINT-1108588 STRING:Q9XV46
EnsemblMetazoa:F32A11.6 GeneID:174960 KEGG:cel:CELE_F32A11.6
UCSC:F32A11.6 CTD:174960 WormBase:F32A11.6 InParanoid:Q9XV46
OMA:HLAEDMA NextBio:886196 Uniprot:Q9XV46
Length = 367
Score = 138 (53.6 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 38/119 (31%), Positives = 54/119 (45%)
Query: 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELLP-KFTHHPH--YRTQLCRAYHKAGYCSFG 73
YKT C+ E C ++ C+FAH EL P K + Y+T+LC Y G C +G
Sbjct: 131 YKTVICQAWLESKTCTFAENCRFAHGEEELRPAKLESRQNNKYKTKLCDKYTTTGLCPYG 190
Query: 74 ARCIFIHEEREISPPDAKHNPRIIY-VNPEYEACCTRD--TQHIRRYERHNATNQPAAP 129
RC+FIH + + P+A +Y V+ + RD I N+ NQ P
Sbjct: 191 KRCLFIHPDNQ---PNAYIRADKLYEVSQRHALADLRDHVESQIMTGNTRNSYNQQPPP 246
>WB|WBGene00007961 [details] [associations]
symbol:C35D6.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0008270 GO:GO:0003676
eggNOG:COG5063 GeneTree:ENSGT00530000063262 EMBL:Z82261 PIR:T19760
RefSeq:NP_502949.1 UniGene:Cel.13375 ProteinModelPortal:O45289
SMR:O45289 STRING:O45289 EnsemblMetazoa:C35D6.4 GeneID:183235
KEGG:cel:CELE_C35D6.4 UCSC:C35D6.4 CTD:183235 WormBase:C35D6.4
HOGENOM:HOG000114669 InParanoid:O45289 NextBio:920410
Uniprot:O45289
Length = 203
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/87 (34%), Positives = 43/87 (49%)
Query: 2 ESLSQRTKAILLNPR-YKTEFCRNIDELGV-CRYSLKCQFAHHPGEL-LPKFT-HHPHYR 57
+ L Q K++ +KT C G C Y KC+FAH EL P+ +H +Y+
Sbjct: 73 DELHQEMKSLKKKEEAFKTSLC-GFHRRGQKCAYGEKCKFAHSVHELRFPQTKRNHRNYK 131
Query: 58 TQLCRAYHKAGYCSFGARCIFIHEERE 84
T LC + G+C +G RC FIH +
Sbjct: 132 TVLCNNFSTTGHCKYGIRCQFIHRSMD 158
>WB|WBGene00004078 [details] [associations]
symbol:pos-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0008340 "determination
of adult lifespan" evidence=IMP] [GO:0001708 "cell fate
specification" evidence=IMP] [GO:0009880 "embryonic pattern
specification" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P
granule" evidence=IDA] [GO:0001106 "RNA polymerase II transcription
corepressor activity" evidence=IDA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA;IPI] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0001708
GO:GO:0008340 GO:GO:0009792 GO:GO:0008266 GO:GO:0008270
GO:GO:0003730 GO:GO:0009880 GO:GO:0001106 HSSP:P22893 GO:GO:0043186
GeneTree:ENSGT00530000063262 EMBL:FO081326 EMBL:AB006208 PIR:T37246
RefSeq:NP_505172.1 UniGene:Cel.19584 ProteinModelPortal:G5EF15
SMR:G5EF15 IntAct:G5EF15 EnsemblMetazoa:F52E1.1 GeneID:179224
KEGG:cel:CELE_F52E1.1 CTD:179224 WormBase:F52E1.1 OMA:QFIHKLV
ChEMBL:CHEMBL1293304 NextBio:904448 Uniprot:G5EF15
Length = 264
Score = 134 (52.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 30/84 (35%), Positives = 40/84 (47%)
Query: 2 ESLSQRTKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELL----PKFTHHPHYR 57
E + QR K +KT C C Y +C+FAH EL P+ +HP Y+
Sbjct: 88 EMMRQRRK----EDAFKTALCDAYKRSQACSYGDQCRFAHGVHELRLPMNPRGRNHPKYK 143
Query: 58 TQLCRAYHKAGYCSFGARCIFIHE 81
T LC + G C +G RC FIH+
Sbjct: 144 TVLCDKFSMTGNCKYGTRCQFIHK 167
>WB|WBGene00009539 [details] [associations]
symbol:F38C2.7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0008270 GO:GO:0003676
eggNOG:COG5063 GeneTree:ENSGT00530000063262 EMBL:Z82267
HOGENOM:HOG000114669 PIR:T21963 RefSeq:NP_502930.1
UniGene:Cel.12984 ProteinModelPortal:O45493 SMR:O45493
IntAct:O45493 STRING:O45493 EnsemblMetazoa:F38C2.7 GeneID:185463
KEGG:cel:CELE_F38C2.7 UCSC:F38C2.7 CTD:185463 WormBase:F38C2.7
InParanoid:O45493 NextBio:928376 Uniprot:O45493
Length = 203
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 30/83 (36%), Positives = 42/83 (50%)
Query: 2 ESLSQRTKAILLNPR-YKTEFCRNIDELGV-CRYSLKCQFAHHPGEL-LPKFT-HHPHYR 57
+ L Q K++ +KT C G C Y KC+FAH EL P+ +H +Y+
Sbjct: 73 DELHQEMKSLKKKEEAFKTSLC-GFHRRGQKCAYGEKCKFAHSVHELRFPQTKRNHRNYK 131
Query: 58 TQLCRAYHKAGYCSFGARCIFIH 80
T LC + G+C +G RC FIH
Sbjct: 132 TVLCNNFSTTGHCKYGIRCQFIH 154
>WB|WBGene00013796 [details] [associations]
symbol:Y116A8C.19 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0008270 GO:GO:0003676
HSSP:P22893 eggNOG:COG5063 GeneTree:ENSGT00530000063262
EMBL:AL117204 HOGENOM:HOG000114669 PIR:T31491 RefSeq:NP_503019.1
ProteinModelPortal:Q9U2V2 SMR:Q9U2V2 STRING:Q9U2V2
EnsemblMetazoa:Y116A8C.19 GeneID:178477 KEGG:cel:CELE_Y116A8C.19
UCSC:Y116A8C.19 CTD:178477 WormBase:Y116A8C.19 InParanoid:Q9U2V2
NextBio:901288 Uniprot:Q9U2V2
Length = 196
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/69 (42%), Positives = 37/69 (53%)
Query: 17 YKTEFCRNIDELGV-CRYSLKCQFAHHPGELLPKFTH----HPHYRTQLCRAYHKAGYCS 71
+KT C G C Y +C+FAH EL +FT H +Y+T LC + GYC
Sbjct: 84 FKTALC-GFQRRGQKCIYGEQCKFAHSVHEL--RFTQAKKTHRNYKTVLCDKFSTTGYCK 140
Query: 72 FGARCIFIH 80
+GARC FIH
Sbjct: 141 YGARCQFIH 149
>WB|WBGene00013797 [details] [associations]
symbol:Y116A8C.20 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0008270 GO:GO:0003676
eggNOG:COG5063 GeneTree:ENSGT00530000063262 EMBL:AL117204
HOGENOM:HOG000114669 PIR:T31492 RefSeq:NP_503020.1
ProteinModelPortal:Q9U2V1 SMR:Q9U2V1 STRING:Q9U2V1
EnsemblMetazoa:Y116A8C.20 GeneID:178478 KEGG:cel:CELE_Y116A8C.20
UCSC:Y116A8C.20 CTD:178478 WormBase:Y116A8C.20 InParanoid:Q9U2V1
NextBio:901292 Uniprot:Q9U2V1
Length = 201
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFT--HHPHYRTQLCRAYHKAGYCSFGA 74
+KT C + C Y +C+FAH EL + +H +Y+T LC + GYC +G
Sbjct: 89 FKTALCLSHKRGKTCIYGEQCKFAHGVHELRCQQAKKNHRNYKTVLCDKFTTTGYCKYGI 148
Query: 75 RCIFIHEERE 84
RC FIH +
Sbjct: 149 RCQFIHRSMD 158
>WB|WBGene00013370 [details] [associations]
symbol:Y60A9.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0008270 GO:GO:0003676
eggNOG:COG5063 GeneTree:ENSGT00530000063262 HOGENOM:HOG000114669
EMBL:AL110495 RefSeq:NP_510397.1 UniGene:Cel.512
ProteinModelPortal:Q9U1Y2 SMR:Q9U1Y2 EnsemblMetazoa:Y60A9.3
GeneID:190441 KEGG:cel:CELE_Y60A9.3 UCSC:Y60A9.3 CTD:190441
WormBase:Y60A9.3 InParanoid:Q9U1Y2 NextBio:945766 Uniprot:Q9U1Y2
Length = 203
Score = 124 (48.7 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 31 CRYSLKCQFAHHPGEL-LPKFT-HHPHYRTQLCRAYHKAGYCSFGARCIFIHEERE 84
C Y KC+FAH EL P+ +H +Y+T LC + G+C +G RC FIH +
Sbjct: 103 CAYGEKCKFAHSVHELRFPQTKRNHRNYKTVLCNKFSTTGHCKYGIRCQFIHRSMD 158
>UNIPROTKB|F1LVN6 [details] [associations]
symbol:F1LVN6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 PROSITE:PS50103 GO:GO:0008270 GO:GO:0003676
IPI:IPI00564509 Ensembl:ENSRNOT00000041400 Uniprot:F1LVN6
Length = 311
Score = 125 (49.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 28/68 (41%), Positives = 35/68 (51%)
Query: 13 LNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSF 72
+NP YKTE + + K QF H EL T HP Y+T+LCR +H +CS
Sbjct: 12 INPTYKTELFWPL------KVQEKWQFPHGFHELR-SLTGHPKYKTELCRTFHTISFCSC 64
Query: 73 GARCIFIH 80
RC FIH
Sbjct: 65 SPRCYFIH 72
>WB|WBGene00003230 [details] [associations]
symbol:mex-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0005813 "centrosome" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0043186 "P granule" evidence=IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0008187
"poly-pyrimidine tract binding" evidence=IDA] [GO:0032880
"regulation of protein localization" evidence=IGI;IMP] [GO:0019904
"protein domain specific binding" evidence=IPI] [GO:0019901
"protein kinase binding" evidence=IPI] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0009792
GO:GO:0040007 GO:GO:0005813 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0032880 GO:GO:0003730
eggNOG:COG5063 GO:GO:0043186 GO:GO:0008187
GeneTree:ENSGT00530000063262 EMBL:Z82286 PIR:T26081
RefSeq:NP_502566.1 ProteinModelPortal:Q9XUB2 SMR:Q9XUB2
IntAct:Q9XUB2 STRING:Q9XUB2 PaxDb:Q9XUB2 EnsemblMetazoa:W02A2.7.1
EnsemblMetazoa:W02A2.7.2 GeneID:178296 KEGG:cel:CELE_W02A2.7
UCSC:W02A2.7 CTD:178296 WormBase:W02A2.7 HOGENOM:HOG000113570
InParanoid:Q9XUB2 OMA:RYHRVME BindingDB:Q9XUB2 ChEMBL:CHEMBL1293319
NextBio:900550 Uniprot:Q9XUB2
Length = 468
Score = 112 (44.5 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 15 PRYKTEFCR-NIDELGVCRYSLKCQFAHHPGELLPKFT--HHPH--YRTQLCRAYHKAG- 68
P YKT C + + C +C+FAH EL +P+ Y+T+LC+ + + G
Sbjct: 269 PNYKTRLCMMHASGIKPCDMGARCKFAHGLKELRATDAPARYPNNKYKTKLCKNFARGGT 328
Query: 69 -YCSFGARCIFIHE-EREIS--PP 88
+C +G RC F+H ++E PP
Sbjct: 329 GFCPYGLRCEFVHPTDKEFQNIPP 352
>TAIR|locus:2062476 [details] [associations]
symbol:AT2G35430 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA;TAS]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 EMBL:AC005314 HSSP:P47974
HOGENOM:HOG000242590 EMBL:BT020232 EMBL:BT020553 IPI:IPI00545818
PIR:E84768 RefSeq:NP_181086.2 UniGene:At.49567
ProteinModelPortal:Q5PP65 SMR:Q5PP65 PaxDb:Q5PP65 PRIDE:Q5PP65
EnsemblPlants:AT2G35430.1 GeneID:818109 KEGG:ath:AT2G35430
TAIR:At2g35430 eggNOG:NOG298782 InParanoid:Q5PP65 OMA:PDKISRV
PhylomeDB:Q5PP65 ProtClustDB:CLSN2915129 Genevestigator:Q5PP65
Uniprot:Q5PP65
Length = 252
Score = 85 (35.0 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 54 PHYRTQLCRAYHKAGYCSFGARCIFIHEEREI 85
P+++T++C + GYC FG+ C F H E+
Sbjct: 142 PNWKTRICNKWQTTGYCPFGSHCHFAHGPSEL 173
Score = 58 (25.5 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 17 YKTEFCRNIDELGVCRYSLK-CQFAHHPGEL-LP 48
+KT+ C G C YS C FAH EL LP
Sbjct: 72 FKTKLCFKF-RAGTCPYSASSCHFAHSAEELRLP 104
>WB|WBGene00003231 [details] [associations]
symbol:mex-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0002009 "morphogenesis
of an epithelium" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009790
"embryo development" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0032880 "regulation of
protein localization" evidence=IGI] [GO:0019904 "protein domain
specific binding" evidence=IPI] [GO:0019901 "protein kinase
binding" evidence=IPI] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0009792 GO:GO:0002009
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0010171
GO:GO:0040011 GO:GO:0032880 GO:GO:0003730 eggNOG:COG5063
GO:GO:0043186 GeneTree:ENSGT00530000063262 EMBL:Z48009
HOGENOM:HOG000113570 PIR:T18624 RefSeq:NP_496043.1
ProteinModelPortal:Q09436 SMR:Q09436 DIP:DIP-26165N IntAct:Q09436
MINT:MINT-1040479 STRING:Q09436 PaxDb:Q09436 EnsemblMetazoa:AH6.5.1
EnsemblMetazoa:AH6.5.2 GeneID:174504 KEGG:cel:CELE_AH6.5 UCSC:AH6.5
CTD:174504 WormBase:AH6.5 InParanoid:Q09436 NextBio:884312
Uniprot:Q09436
Length = 467
Score = 103 (41.3 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 17 YKTEFCR-NIDELGVCRYSLKCQFAHHPGELLPKF--THHPH--YRTQLCRAYHK--AGY 69
+KT C + + C +C+FAH EL T +P+ Y+T+LC+ + + +G
Sbjct: 274 FKTRLCMTHAAGINPCALGARCKFAHGLKELRASDIPTRYPNNKYKTKLCKNFARGGSGV 333
Query: 70 CSFGARCIFIH 80
C +G RC F+H
Sbjct: 334 CPYGLRCEFVH 344
>TAIR|locus:2028306 [details] [associations]
symbol:AT1G32360 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA;TAS]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 EMBL:AC007767 EMBL:AC084110
EMBL:AK118013 EMBL:AY056407 EMBL:AY081710 IPI:IPI00524758
PIR:D86448 RefSeq:NP_564396.1 UniGene:At.15521 UniGene:At.74086
HSSP:P47974 ProteinModelPortal:Q9LQM3 SMR:Q9LQM3 PaxDb:Q9LQM3
PRIDE:Q9LQM3 EnsemblPlants:AT1G32360.1 GeneID:840128
KEGG:ath:AT1G32360 TAIR:At1g32360 eggNOG:NOG288218
HOGENOM:HOG000242590 InParanoid:Q9LQM3 OMA:PREEFQI PhylomeDB:Q9LQM3
ProtClustDB:CLSN2688195 Genevestigator:Q9LQM3 Uniprot:Q9LQM3
Length = 384
Score = 81 (33.6 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 55 HYRTQLCRAYHKAGYCSFGARCIFIHEEREI 85
+++T++C + GYC FGA+C F H E+
Sbjct: 260 NWKTRICNKWEITGYCPFGAKCHFAHGAAEL 290
Score = 66 (28.3 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 5 SQRTKAILLNPRYKTEFCRNIDELGVCRYSLKCQFAHHPGEL 46
S RTKAI +KT+ C G C Y C FAH EL
Sbjct: 81 SNRTKAIG-KMFFKTKLCCKF-RAGTCPYITNCNFAHTVEEL 120
>TAIR|locus:2101170 [details] [associations]
symbol:AT3G48440 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:AL049659
HOGENOM:HOG000237733 EMBL:BT033139 IPI:IPI00517303 PIR:T06698
RefSeq:NP_190414.1 UniGene:At.50258 ProteinModelPortal:Q9STM4
SMR:Q9STM4 PaxDb:Q9STM4 PRIDE:Q9STM4 EnsemblPlants:AT3G48440.1
GeneID:824003 KEGG:ath:AT3G48440 TAIR:At3g48440 eggNOG:NOG288127
InParanoid:Q9STM4 OMA:PEWNGYQ PhylomeDB:Q9STM4
ProtClustDB:CLSN2719348 Genevestigator:Q9STM4 GermOnline:AT3G48440
Uniprot:Q9STM4
Length = 448
Score = 98 (39.6 bits), Expect = 0.00029, P = 0.00029
Identities = 26/92 (28%), Positives = 39/92 (42%)
Query: 22 CRNIDELGVCRYSLKCQFAHHPGELLPKFTHH-------PHYRTQ-LCRAYHKAGYCSFG 73
C + G C++ C++ HHP LPK + P Q +C Y + G C FG
Sbjct: 352 CSYYMKTGDCKFKFNCKY-HHPKNRLPKLPPYALNDKGLPLRPDQNICTYYSRYGICKFG 410
Query: 74 ARCIFIHEEREISPPDAKHNPRIIYVNPEYEA 105
C F H + PP + + + I P+ A
Sbjct: 411 PACRFDHS---VQPPYSTESSQAIVEPPQVSA 439
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.137 0.449 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 133 133 0.00091 102 3 11 22 0.37 31
30 0.43 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 66
No. of states in DFA: 570 (61 KB)
Total size of DFA: 151 KB (2091 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.47u 0.05s 12.52t Elapsed: 00:00:10
Total cpu time: 12.48u 0.05s 12.53t Elapsed: 00:00:10
Start: Thu Aug 15 13:00:41 2013 End: Thu Aug 15 13:00:51 2013