RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4482
(133 letters)
>gnl|CDD|227395 COG5063, CTH1, CCCH-type Zn-finger protein [General function
prediction only].
Length = 351
Score = 46.6 bits (110), Expect = 7e-07
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTH-HPHYRTQLCRAYHKAGYCSFGAR 75
++TE C N ++ G C Y L+C F H + + Y CR K G G
Sbjct: 272 FRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGA 331
Query: 76 CIFIHEER 83
+++
Sbjct: 332 VCKSFDKK 339
Score = 45.0 bits (106), Expect = 2e-06
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 17 YKTEFCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARC 76
YKTE R+ E+ CRY K FA H + HP Y+T+ + GY + RC
Sbjct: 113 YKTEMLRSSTEIPYCRYPDKNPFA-HSKAISSLAQTHPKYKTESLEVFINPGYVPYSKRC 171
Query: 77 IFIH 80
FI
Sbjct: 172 CFIS 175
Score = 38.1 bits (88), Expect = 5e-04
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 15 PRYKT--EFCRNIDELGVCRYSL---KCQFA---HHPGELLPKFTHHPHYRTQLCRAYHK 66
P YKT E C + G C Y + KCQFA H EL K +RT+ C + K
Sbjct: 224 PLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQN-FRTEPCINWEK 282
Query: 67 AGYCSFGARCIFIHEEREISPPDAKHN 93
+GYC +G RC F H + + +
Sbjct: 283 SGYCPYGLRCCFKHGDDSDIEMYEEAS 309
>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and
similar).
Length = 27
Score = 38.7 bits (91), Expect = 2e-05
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 56 YRTQLCRAYHKAGYCSFGARCIFIH 80
Y+T+LCR + + G C +G RC F H
Sbjct: 1 YKTELCRFFSRTGTCKYGDRCKFAH 25
Score = 30.6 bits (70), Expect = 0.019
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 17 YKTEFCRNIDELGVCRYSLKCQFAHHP 43
YKTE CR G C+Y +C+FAH
Sbjct: 1 YKTELCRFFSRTGTCKYGDRCKFAHGQ 27
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger.
Length = 27
Score = 31.8 bits (73), Expect = 0.008
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 56 YRTQLCRAYHKAGYCSFGARCIFIHEE 82
Y+T+LC+ + K GYC G RC F H
Sbjct: 2 YKTELCK-FFKRGYCPRGDRCKFAHPL 27
Score = 27.2 bits (61), Expect = 0.36
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 16 RYKTEFCRNIDELGVCRYSLKCQFAHHP 43
+YKTE C+ + G C +C+FAH
Sbjct: 1 KYKTELCKFF-KRGYCPRGDRCKFAHPL 27
>gnl|CDD|224008 COG1083, NeuA, CMP-N-acetylneuraminic acid synthetase [Cell
envelope biogenesis, outer membrane].
Length = 228
Score = 32.7 bits (75), Expect = 0.036
Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 21/94 (22%)
Query: 37 CQFAHHP--------GELLPKFTHHPHYRT---QLCRAYHKAGYCSFGARCIFIHEEREI 85
+ HHP GE+ P P + T L +AY + G + + +
Sbjct: 134 VECEHHPYKAFSLNNGEVKP-VNEDPDFETRRQDLPKAYRENGAIYINKKDALLENDCFF 192
Query: 86 SPPDAKHNPRIIYVNPEYEACCTRDTQHIRRYER 119
P I+Y PE E+ D E
Sbjct: 193 IPNT------ILYEMPEDESI---DIDTELDLEI 217
>gnl|CDD|227416 COG5084, YTH1, Cleavage and polyadenylation specificity factor
(CPSF) Clipper subunit and related makorin family
Zn-finger proteins [General function prediction only].
Length = 285
Score = 31.4 bits (71), Expect = 0.10
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 11/95 (11%)
Query: 21 FCRNIDELGVCRYSLKCQFAHHPGELLPKFTHHPHYRTQLCRAYHKAGYCSFGARCIFIH 80
C+ G+C+ C+F H + CR++ G CS G C + H
Sbjct: 106 VCKFFLR-GLCKSGFSCEFLHEYDLR--------SSQGPPCRSFSLKGSCSSGPSCGYSH 156
Query: 81 EEREISPPDAKHNPRIIYVNPEYEACCTRDTQHIR 115
+ + + Y A C H
Sbjct: 157 IDPDSFAGNCDQYSGATYGFCPLGASCKF--SHTL 189
>gnl|CDD|235394 PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase;
Provisional.
Length = 1290
Score = 29.4 bits (67), Expect = 0.52
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 16/56 (28%)
Query: 9 KAILLNPRYKTE----FCRNID--ELGVCRYSLKCQ-FAH----HPG-ELLPKFTH 52
K+IL NPR + + F R D LGVC CQ ++ PG E P+F
Sbjct: 1104 KSILFNPRLRDQFEAFFARP-DTFALGVCN---GCQMMSNLKEIIPGAEHWPRFVR 1155
>gnl|CDD|227481 COG5152, COG5152, Uncharacterized conserved protein, contains RING
and CCCH-type Zn-fingers [General function prediction
only].
Length = 259
Score = 28.9 bits (64), Expect = 0.62
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 56 YRTQLCRAYHKAGYCSFGARCIFIH 80
+ +C+ Y + GYC +G C F+H
Sbjct: 139 TQPDVCKDYKETGYCGYGDSCKFLH 163
>gnl|CDD|235249 PRK04194, PRK04194, hypothetical protein; Provisional.
Length = 392
Score = 27.1 bits (61), Expect = 3.4
Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 23/69 (33%)
Query: 60 LCRAYHKAGYC---------SFGARCIFIHE---EREISPPD----------AKHNPRII 97
+C KA + G R + ER I + A + II
Sbjct: 297 ICP-PEKAEELARILFRETGTLGVREYPVERWVLERRIETVETPYGEVRVKVAYRDGGII 355
Query: 98 YVNPEYEAC 106
V PEYE C
Sbjct: 356 NVKPEYEDC 364
>gnl|CDD|224556 COG1641, COG1641, Uncharacterized conserved protein [Function
unknown].
Length = 387
Score = 26.9 bits (60), Expect = 3.8
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 13/49 (26%)
Query: 71 SFGARCIFIHE---EREISPPD----------AKHNPRIIYVNPEYEAC 106
S G R + +R A+ ++ PE+E C
Sbjct: 310 SLGVRVFPVERYTLDRRFETVKVEYGTIRVKVARFEGEVVNAKPEFEDC 358
>gnl|CDD|173824 cd00649, catalase_peroxidase_1, N-terminal catalytic domain of
catalase-peroxidases. This is a subgroup of
heme-dependent peroxidases of the plant superfamily that
share a heme prosthetic group and catalyze a multistep
oxidative reaction involving hydrogen peroxide as the
electron acceptor. Catalase-peroxidases can exhibit both
catalase and broad-spectrum peroxidase activities
depending on the steady-state concentration of hydrogen
peroxide. These enzymes are found in many archaeal and
bacterial organisms, where they neutralize potentially
lethal hydrogen peroxide molecules generated during
photosynthesis or stationary phase. Along with related
intracellular fungal and plant peroxidases,
catalase-peroxidases belong to class I of the plant
peroxidase superfamily. Unlike the eukaryotic enzymes,
they are typically comprised of two homologous domains
that probably arose via a single gene duplication event.
The heme binding motif is present only in the N-terminal
domain; the function of the C-terminal domain is not
clear.
Length = 409
Score = 26.5 bits (59), Expect = 5.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 81 EEREISPPDAKHNPRIIYVNPE 102
+R++ P A +IYVNPE
Sbjct: 184 GDRDLENPLAAVQMGLIYVNPE 205
>gnl|CDD|185516 PTZ00215, PTZ00215, ribose 5-phosphate isomerase; Provisional.
Length = 151
Score = 25.8 bits (57), Expect = 6.0
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 53 HPHYRTQLCRAYHKAGYCSFGARCIFIHEEREI------SPPDA-KHNPRI 96
H HY ++ R ++ A +FG R I +EI +P + +H RI
Sbjct: 91 HDHYTARMSRQHNNANVLAFGGRTTGIEVAKEIIDTFLSTPFEGGRHTERI 141
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.137 0.449
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,731,310
Number of extensions: 571895
Number of successful extensions: 549
Number of sequences better than 10.0: 1
Number of HSP's gapped: 546
Number of HSP's successfully gapped: 20
Length of query: 133
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 47
Effective length of database: 7,123,158
Effective search space: 334788426
Effective search space used: 334788426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)