RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4482
         (133 letters)



>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 34

 Score = 47.0 bits (112), Expect = 3e-09
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 51 THHPHYRTQLCRAYHKAGYCSFGARCIFIHEERE 84
          T HP Y+T+LCR +H  G+C +G RC FIH   E
Sbjct: 1  TRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE 34



 Score = 42.0 bits (99), Expect = 3e-07
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 14 NPRYKTEFCRNIDELGVCRYSLKCQFAHHPGE 45
          +P+YKTE CR    +G C Y  +C F H+  E
Sbjct: 3  HPKYKTELCRTFHTIGFCPYGPRCHFIHNADE 34


>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475)
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 40

 Score = 45.5 bits (108), Expect = 2e-08
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 51 THHPHYRTQLCRAYHKAGYCSFGARCIFIHEEREISPPD 89
          T    Y+T+LCR Y ++G C +GA+C F H   E+   +
Sbjct: 2  TTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN 40



 Score = 44.0 bits (104), Expect = 6e-08
 Identities = 21/33 (63%), Positives = 22/33 (66%)

Query: 14 NPRYKTEFCRNIDELGVCRYSLKCQFAHHPGEL 46
          + RYKTE CR   E G CRY  KCQFAH  GEL
Sbjct: 4  SSRYKTELCRTYSESGRCRYGAKCQFAHGLGEL 36


>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 43.5 bits (103), Expect = 7e-08
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 14 NPRYKTEFCRNIDELGVCRYSLKCQFAHHPGELLP 48
          + RYKTE CR  +E G C+Y  KCQFAH   EL  
Sbjct: 1  STRYKTELCRPFEESGTCKYGEKCQFAHGFHELRS 35



 Score = 42.8 bits (101), Expect = 2e-07
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 56 YRTQLCRAYHKAGYCSFGARCIFIHEEREISP 87
          Y+T+LCR + ++G C +G +C F H   E+  
Sbjct: 4  YKTELCRPFEESGTCKYGEKCQFAHGFHELRS 35


>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing
          protein C19orf7 (KIAA1064) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 29

 Score = 23.7 bits (51), Expect = 1.6
 Identities = 7/26 (26%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 57 RTQLCRAYHKAGYCSFGARCIFIHEE 82
          + +LC+ Y   G+C+    C ++H +
Sbjct: 5  KRELCKFYIT-GFCARAENCPYMHGD 29


>d1k8ta_ e.41.1.1 (A:) Adenylylcyclase toxin (the edema factor)
           {Bacillus anthracis [TaxId: 1392]}
          Length = 509

 Score = 25.3 bits (55), Expect = 2.7
 Identities = 9/39 (23%), Positives = 17/39 (43%)

Query: 86  SPPDAKHNPRIIYVNPEYEACCTRDTQHIRRYERHNATN 124
           +    + +  I  +NPE E   T++ +   R+   N T 
Sbjct: 293 NEEFPEKDNEIFIINPEGEFILTKNWEMTGRFIEKNITG 331


>d1x9ba_ a.10.2.1 (A:) Hypothetical membrane protein Ta0354,
          soluble domain {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 53

 Score = 23.5 bits (50), Expect = 3.5
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 3  SLSQRTK-AILLNPRYKTEFCRNIDELGVCRYSL 35
          +LS R K   ++N   K+ F RN++EL      L
Sbjct: 2  NLSDRAKFESMINSPSKSVFVRNLNELEALAVRL 35


>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing
          protein C19orf7 (KIAA1064) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 56

 Score = 22.6 bits (48), Expect = 6.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 61 CRAYHKAGYCSFGARCIFIHE 81
          C+ YH  G C  G  C+F H+
Sbjct: 3  CKLYHTTGNCINGDDCMFSHD 23


>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 144

 Score = 23.8 bits (51), Expect = 6.9
 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 57  RTQLCRAYHKAGYCSFGARCIFI---HEEREISPPDAKHNPRIIYVNPEYEACCTRDTQH 113
           R  +  ++ +      GA C+F+    EE      D     R +  + ++        + 
Sbjct: 67  RFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEE 126

Query: 114 IRRYERH 120
           +   ER 
Sbjct: 127 VMVLERI 133


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.137    0.449 

Gapped
Lambda     K      H
   0.267   0.0697    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 539,572
Number of extensions: 25010
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 19
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.3 bits)