BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4485
         (91 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YIQ|A Chain A, Molecular Cloning And Structural Analysis Of
           Quinohemoprotein Alcohol Dehydrogenase Adhiig From
           Pseudomonas Putida Hk5. Compariison To The Other
           Quinohemoprotein Alcohol Dehydrogenase Adhiib Found In
           The Same Microorganism
          Length = 689

 Score = 27.3 bits (59), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 34  GSVEVKWSKRMTSGAVVSVVDFGSGGWWFESKSNLGNPSFYRSSDF 79
           G V   W+K M       ++D  +  +W   K NL  P+F+ + D+
Sbjct: 346 GIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDW 391


>pdb|2ENM|A Chain A, Solution Structure Of The Sh3 Domain From Mouse Sorting
          Nexin-9
          Length = 77

 Score = 26.2 bits (56), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 44 MTSGAVVSVVDFGSGGWWFESKSNLG 69
          +T G +++V +   GG W E K+N G
Sbjct: 29 VTEGEIITVTNPNVGGGWLEGKNNKG 54


>pdb|3NR9|A Chain A, Structure Of Human Cdc2-Like Kinase 2 (Clk2)
 pdb|3NR9|B Chain B, Structure Of Human Cdc2-Like Kinase 2 (Clk2)
 pdb|3NR9|C Chain C, Structure Of Human Cdc2-Like Kinase 2 (Clk2)
          Length = 368

 Score = 26.2 bits (56), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 35  SVEVKWSKRMTSGAVVSVVDFGSGGWWFESKSNLGNPSFYRSSD 78
           ++E K  +R      V VVDFGS  +  E  S + +   YR+ +
Sbjct: 180 NLEKKRDERSVKSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPE 223


>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
          Length = 193

 Score = 25.8 bits (55), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 44 MTSGAVVSVVDFGSGGWWF 62
          +++G VV VV+    GWWF
Sbjct: 30 LSTGDVVEVVEKSESGWWF 48


>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
          Domain Of P47phox
          Length = 193

 Score = 25.8 bits (55), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 44 MTSGAVVSVVDFGSGGWWF 62
          +++G VV VV+    GWWF
Sbjct: 30 LSTGDVVEVVEKSESGWWF 48


>pdb|1ZD1|A Chain A, Human Sulfortransferase Sult4a1
 pdb|1ZD1|B Chain B, Human Sulfortransferase Sult4a1
          Length = 284

 Score = 25.4 bits (54), Expect = 7.4,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 14  TPDIHGLFVAFAKRFFQDRLG------SVEVKWSKRMTSGAV 49
           T    G F  F +RF  D+LG       V+  W  RM S  +
Sbjct: 151 TMSYRGTFQEFCRRFMNDKLGYGSWFEHVQEFWEHRMDSNVL 192


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,000,250
Number of Sequences: 62578
Number of extensions: 105361
Number of successful extensions: 249
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 9
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)