BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4485
(91 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|D3ZVU1|SPRTN_RAT SprT-like domain-containing protein Spartan OS=Rattus norvegicus
GN=Sprtn PE=2 SV=1
Length = 496
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 1 MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGG 59
+SL D+ WE++DPTPD+ LF+ F RFF +L +VEVKWS RMT A + + G GG
Sbjct: 29 LSLVDASWELVDPTPDLQALFLQFNDRFFWGQLEAVEVKWSVRMTLCAGICTYE-GRGG 86
>sp|A5D979|SPRTN_BOVIN SprT-like domain-containing protein Spartan OS=Bos taurus
GN=SPRTN PE=2 SV=1
Length = 487
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 1 MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGG 59
+SL D+ WE++DPTPD+ GLFV F RFF +L +VEVKWS RMT A + + G GG
Sbjct: 29 LSLVDASWELVDPTPDLQGLFVLFNDRFFWGQLEAVEVKWSVRMTLCAGICSYE-GRGG 86
>sp|G3X912|SPRTN_MOUSE SprT-like domain-containing protein Spartan OS=Mus musculus
GN=Sprtn PE=2 SV=1
Length = 497
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 1 MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGG 59
+SL D+ WE++DPTPD+ LF+ F RFF +L +VEVKWS RMT A + + G GG
Sbjct: 30 VSLVDASWELVDPTPDLQALFLQFNDRFFWGQLEAVEVKWSVRMTLCAGICTYE-GRGG 87
>sp|Q9H040|SPRTN_HUMAN SprT-like domain-containing protein Spartan OS=Homo sapiens
GN=SPRTN PE=1 SV=2
Length = 489
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 1 MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGG 59
+SL D+ WE++DPTPD+ LFV F +FF +L +VEVKWS RMT A + + G GG
Sbjct: 29 LSLVDASWELVDPTPDLQALFVQFNDQFFWGQLEAVEVKWSVRMTLCAGICSYE-GKGG 86
>sp|F6UH96|SPRTN_XENTR SprT-like domain-containing protein Spartan OS=Xenopus tropicalis
GN=sprtn PE=2 SV=2
Length = 436
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGG 59
+S+ D WE++DP PDI LF+ F FF +L +EVKWS RMT A V + G GG
Sbjct: 3 LSVVDPTWELLDPNPDIRALFLEFNDTFFWGQLSGIEVKWSARMTLCAGVCSYE-GRGG 60
>sp|Q22557|SPRTN_CAEEL SprT-like domain-containing protein Spartan OS=Caenorhabditis
elegans GN=dvc-1 PE=1 SV=1
Length = 368
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 2 SLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDF--GSGG 59
SL D +E+ DP PDIH LF+ F RFF L EVKWS RM + A + + G GG
Sbjct: 5 SLVDPSFELSDPCPDIHALFIQFDARFFGGSLACCEVKWSPRMYACAGICSYEIRGGRGG 64
>sp|D1ZT73|FEN1_SORMK Flap endonuclease 1 OS=Sordaria macrospora (strain ATCC MYA-333 /
DSM 997 / K(L3346) / K-hell) GN=FEN1 PE=3 SV=1
Length = 394
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 3 LNDSQWEVIDPTPDIHGL--FVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDF 55
L D +WE PDI GL F+A K F +DR+ S +K K M + + F
Sbjct: 298 LCDFKWE----KPDIEGLVQFLAHEKGFSEDRVRSASIKLQKNMQTSQQARIEGF 348
>sp|Q9A4Z6|SFSA_CAUCR Sugar fermentation stimulation protein homolog OS=Caulobacter
crescentus (strain ATCC 19089 / CB15) GN=sfsA PE=3 SV=1
Length = 239
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 13 PTPDIHGLFVAFAKRFFQDR-LGSVEVKWSKRMTSGAVVSVVDFGSGGW 60
P P IHG V+ KRFF D L + + GA++ V D G G W
Sbjct: 4 PQPLIHGRLVSRYKRFFADLVLDDGQEITAHCPNPGAMLGVKDAGQGAW 52
>sp|B8H0Z4|SFSA_CAUCN Sugar fermentation stimulation protein homolog OS=Caulobacter
crescentus (strain NA1000 / CB15N) GN=sfsA PE=3 SV=1
Length = 239
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 13 PTPDIHGLFVAFAKRFFQDR-LGSVEVKWSKRMTSGAVVSVVDFGSGGW 60
P P IHG V+ KRFF D L + + GA++ V D G G W
Sbjct: 4 PQPLIHGRLVSRYKRFFADLVLDDGQEITAHCPNPGAMLGVKDAGQGAW 52
>sp|Q828A5|ARGJ_STRAW Arginine biosynthesis bifunctional protein ArgJ OS=Streptomyces
avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 /
NCIMB 12804 / NRRL 8165 / MA-4680) GN=argJ PE=3 SV=1
Length = 383
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 18 HGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGG 59
+G +A A F +R+ + V WS+++ G VVS V SGG
Sbjct: 32 NGPRLAAAGVFTSNRVKAAPVLWSEQVLKGGVVSAVVLNSGG 73
>sp|Q7SG06|PPIH_NEUCR Peptidyl-prolyl cis-trans isomerase H OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=cyp-3 PE=3 SV=1
Length = 182
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 63 ESKSNLGNPSFYRSSDFYRNIYTF 86
ESK+NLG P Y+ S F+R I F
Sbjct: 51 ESKNNLGRPQGYKGSKFHRIIPNF 74
>sp|Q0CDB3|AMPP1_ASPTN Probable Xaa-Pro aminopeptidase P OS=Aspergillus terreus (strain
NIH 2624 / FGSC A1156) GN=ampp PE=3 SV=1
Length = 654
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 2 SLNDSQWEVIDPTPDIHGLFV---AFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVD 54
+L D W P+P + V FA + FQD++ + + K+ T+G V+S++D
Sbjct: 184 NLVDLVWGNDRPSPPREKVTVHPEKFAGKSFQDKISELRKELEKKKTAGFVISMLD 239
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,644,889
Number of Sequences: 539616
Number of extensions: 1207960
Number of successful extensions: 2806
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2796
Number of HSP's gapped (non-prelim): 14
length of query: 91
length of database: 191,569,459
effective HSP length: 61
effective length of query: 30
effective length of database: 158,652,883
effective search space: 4759586490
effective search space used: 4759586490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)