Query psy4485
Match_columns 91
No_of_seqs 92 out of 101
Neff 3.1
Searched_HMMs 46136
Date Fri Aug 16 18:18:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4485.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4485hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3931|consensus 100.0 6.9E-33 1.5E-37 228.4 5.5 66 1-67 29-94 (484)
2 PF10263 SprT-like: SprT-like 99.1 8.8E-11 1.9E-15 80.6 5.5 48 17-66 1-48 (157)
3 smart00731 SprT SprT homologue 98.6 1.8E-08 3.9E-13 70.5 2.3 47 15-66 1-47 (146)
4 PRK04351 hypothetical protein; 97.2 0.00026 5.6E-09 51.3 2.9 58 16-83 5-64 (149)
5 KOG3854|consensus 83.0 0.38 8.3E-06 41.7 0.0 36 17-53 292-327 (505)
6 PRK13489 chemoreceptor glutami 70.0 4.5 9.7E-05 31.9 2.7 26 44-69 41-68 (233)
7 PRK13495 chemoreceptor glutami 68.8 6.9 0.00015 28.8 3.3 26 44-69 25-52 (159)
8 PRK13498 chemoreceptor glutami 67.9 5.6 0.00012 29.4 2.7 25 44-68 30-56 (167)
9 PRK13488 chemoreceptor glutami 67.6 7.3 0.00016 28.5 3.2 25 44-68 25-51 (157)
10 PRK13497 chemoreceptor glutami 67.0 5.8 0.00013 29.9 2.7 26 44-69 31-58 (184)
11 PRK13487 chemoreceptor glutami 65.0 6.8 0.00015 29.9 2.7 25 44-68 44-70 (201)
12 PRK13490 chemoreceptor glutami 64.9 8.8 0.00019 28.2 3.2 26 44-69 27-54 (162)
13 PRK13491 chemoreceptor glutami 62.5 7.9 0.00017 29.8 2.7 25 44-68 37-63 (199)
14 PRK13494 chemoreceptor glutami 62.1 10 0.00022 28.1 3.2 25 44-68 33-59 (163)
15 PRK13493 chemoreceptor glutami 60.4 8.9 0.00019 29.6 2.7 25 44-68 51-77 (213)
16 PF10785 NADH-u_ox-rdase: NADH 57.9 8.1 0.00018 25.7 1.9 23 5-27 1-23 (86)
17 PLN02975 complex I subunit 54.6 8.5 0.00019 26.9 1.6 25 3-27 5-29 (97)
18 PF12221 HflK_N: Bacterial mem 49.8 35 0.00075 20.4 3.5 28 1-28 1-34 (42)
19 PF06945 DUF1289: Protein of u 48.2 6.5 0.00014 23.8 0.2 17 45-62 2-18 (51)
20 PLN02343 allene oxide cyclase 42.2 18 0.00038 28.9 1.8 30 40-87 102-134 (229)
21 COG1871 CheD Chemotaxis protei 33.6 47 0.001 25.2 2.8 26 43-68 30-57 (164)
22 KOG0684|consensus 31.2 46 0.001 29.1 2.7 34 5-44 451-485 (486)
23 PF12894 Apc4_WD40: Anaphase-p 28.4 38 0.00083 20.1 1.3 14 37-50 16-29 (47)
24 PF01846 FF: FF domain; Inter 22.6 23 0.0005 20.2 -0.4 21 4-24 30-51 (51)
25 PF13893 RRM_5: RNA recognitio 20.4 37 0.00081 19.1 0.2 24 16-41 33-56 (56)
No 1
>KOG3931|consensus
Probab=99.97 E-value=6.9e-33 Score=228.41 Aligned_cols=66 Identities=45% Similarity=0.782 Sum_probs=64.8
Q ss_pred CCCCCCcccccCCCCCHHHHHHHHHHHHhcCcCCCeEEEeCCCCccceeeEEEecCCcceEEEeccC
Q psy4485 1 MSLNDSQWEVIDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGGWWFESKSN 67 (91)
Q Consensus 1 ~slvD~~wEl~DP~PDIh~LF~~fN~~fF~g~L~~VeV~WSkRMT~CAGiC~y~~g~gG~C~i~ls~ 67 (91)
||||||+|||+||+|||++||.+||++||||+|++|+|+||+||++|||||+|+ |++|+|.|+||+
T Consensus 29 ~sLVDpswELvDPtPDi~AlFiqFd~~FF~g~L~avevkWS~rMy~CAGICsye-g~gg~csIRLSe 94 (484)
T KOG3931|consen 29 LSLVDPSWELVDPTPDIQALFIQFDDQFFWGQLEAVEVKWSVRMYLCAGICSYE-GKGGMCSIRLSE 94 (484)
T ss_pred ccccCCcceecCCCccHHHHHhhhhHHhhhccceeEEEecchhhheecceeeec-cccceEEEEecc
Confidence 689999999999999999999999999999999999999999999999999999 999999999986
No 2
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=99.14 E-value=8.8e-11 Score=80.59 Aligned_cols=48 Identities=25% Similarity=0.343 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcCcCCCeEEEeCCCCccceeeEEEecCCcceEEEecc
Q psy4485 17 IHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGGWWFESKS 66 (91)
Q Consensus 17 Ih~LF~~fN~~fF~g~L~~VeV~WSkRMT~CAGiC~y~~g~gG~C~i~ls 66 (91)
+++||.+||+.||+|+|+.+.|+||+||+.+||.|.++ +.+.+.|.++
T Consensus 1 ~~~~f~~~n~~~F~~~L~~~~i~~~~~~~~~~G~~~~~--~~~~~~I~ls 48 (157)
T PF10263_consen 1 LEELFDRFNEEYFGGKLPPIPITWSKRMKRTAGRCRYK--RRSPCEIRLS 48 (157)
T ss_pred CHHHHHHHHHHHhCCCCCCeEEEEECCCCCceEEEEEC--CCCceEEEEC
Confidence 46899999999999999999999999999999999998 4336778776
No 3
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=98.62 E-value=1.8e-08 Score=70.48 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHhcCcCCCeEEEeCCCCccceeeEEEecCCcceEEEecc
Q psy4485 15 PDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGGWWFESKS 66 (91)
Q Consensus 15 PDIh~LF~~fN~~fF~g~L~~VeV~WSkRMT~CAGiC~y~~g~gG~C~i~ls 66 (91)
+|+.++|.++|..||.++|+.+.|.||+||+..||.|.+. .+.|+++
T Consensus 1 ~~L~~~~~~~n~~~F~~~l~~~~i~w~~r~~~~~G~~~~~-----~~~I~ln 47 (146)
T smart00731 1 QELTQRLEDASLRVFGRKLPHPKVVWNKRLRKTGGRCLLK-----SAEIRLN 47 (146)
T ss_pred ChHHHHHHHHHHHHHCCCCCCCEEEEehhhhhhhHHhhcC-----CCEEEeC
Confidence 4789999999999999999999999999999999999763 3666665
No 4
>PRK04351 hypothetical protein; Provisional
Probab=97.24 E-value=0.00026 Score=51.33 Aligned_cols=58 Identities=10% Similarity=0.206 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHhcCcCCCeEEEeCCCCccceeeEEEecCCcceEEEeccCCCCCceeec--chhhhce
Q psy4485 16 DIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGGWWFESKSNLGNPSFYRS--SDFYRNI 83 (91)
Q Consensus 16 DIh~LF~~fN~~fF~g~L~~VeV~WSkRMT~CAGiC~y~~g~gG~C~i~ls~l~~p~~~~~--~~~~~~~ 83 (91)
.+..|+++++..+|...++. +|.|++||+..||.+..+ . ..|.++ |..+.+ .+|.+++
T Consensus 5 ~l~~l~~~~s~~~F~~~f~~-~v~~n~RlrttgG~~~l~--~---~~I~ln----p~ll~~~~~~~l~~v 64 (149)
T PRK04351 5 ELQRLVEEISLEYFGKPFRH-QAYFNKRLRTTGGRYLLK--D---HHIEFN----PKMLEEYGLEELIGI 64 (149)
T ss_pred HHHHHHHHHHHHHhCCCCCc-EEEEeccchhhhheeecC--C---CeEEeC----HHHHhhccHHHHHhh
Confidence 47899999999999999995 999999999999999776 2 345553 666665 5555543
No 5
>KOG3854|consensus
Probab=82.95 E-value=0.38 Score=41.72 Aligned_cols=36 Identities=22% Similarity=0.413 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCcCCCeEEEeCCCCccceeeEEE
Q psy4485 17 IHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVV 53 (91)
Q Consensus 17 Ih~LF~~fN~~fF~g~L~~VeV~WSkRMT~CAGiC~y 53 (91)
...||..||...|..+|. |.+.|+++|--.||.|.-
T Consensus 292 aq~L~~~fn~aV~~~~L~-vpi~W~~~mrktag~cl~ 327 (505)
T KOG3854|consen 292 AQVLYKMFNHAVFSKKLQ-VPIGWNNLMRKTAGCCLN 327 (505)
T ss_pred HHHHHHHHHhhhcccCCC-chHHHHHHhhhccccccc
Confidence 357999999999999996 445999999999999965
No 6
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=70.03 E-value=4.5 Score=31.85 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=22.7
Q ss_pred CccceeeEEEec--CCcceEEEeccCCC
Q psy4485 44 MTSGAVVSVVDF--GSGGWWFESKSNLG 69 (91)
Q Consensus 44 MT~CAGiC~y~~--g~gG~C~i~ls~l~ 69 (91)
+-+|-|+|-|++ +-||+|.+.|+.-+
T Consensus 41 LGSCVaV~LyDp~~~IGGM~HfmLP~~~ 68 (233)
T PRK13489 41 LGSCVAACLHDPVAGIGGMNHFMLPDDG 68 (233)
T ss_pred CccceEEEEEcCCCCEEEEEEEECCCCc
Confidence 789999999997 56999999999753
No 7
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=68.84 E-value=6.9 Score=28.77 Aligned_cols=26 Identities=19% Similarity=0.063 Sum_probs=22.1
Q ss_pred CccceeeEEEec--CCcceEEEeccCCC
Q psy4485 44 MTSGAVVSVVDF--GSGGWWFESKSNLG 69 (91)
Q Consensus 44 MT~CAGiC~y~~--g~gG~C~i~ls~l~ 69 (91)
+-+|-|+|-|++ +-+|+|.+.|+.-.
T Consensus 25 LGSCVaV~l~Dp~~~igGm~H~mLP~~~ 52 (159)
T PRK13495 25 LGSCVGVCMRDPVAKVGAMAHVMLPDSG 52 (159)
T ss_pred CcCeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 678999999996 55899999999754
No 8
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=67.89 E-value=5.6 Score=29.39 Aligned_cols=25 Identities=12% Similarity=0.001 Sum_probs=21.9
Q ss_pred CccceeeEEEec--CCcceEEEeccCC
Q psy4485 44 MTSGAVVSVVDF--GSGGWWFESKSNL 68 (91)
Q Consensus 44 MT~CAGiC~y~~--g~gG~C~i~ls~l 68 (91)
+-+|.|+|-|++ +-+|+|.+.|+.-
T Consensus 30 LGSCVav~l~Dp~~~iGGm~H~mLP~~ 56 (167)
T PRK13498 30 LGSCVAITFWHPQQHIGGMCHFMLPGR 56 (167)
T ss_pred CcccEEEEEEcCCCCEEEEEEEECCCC
Confidence 779999999996 5589999999965
No 9
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=67.56 E-value=7.3 Score=28.48 Aligned_cols=25 Identities=16% Similarity=0.028 Sum_probs=21.7
Q ss_pred CccceeeEEEec--CCcceEEEeccCC
Q psy4485 44 MTSGAVVSVVDF--GSGGWWFESKSNL 68 (91)
Q Consensus 44 MT~CAGiC~y~~--g~gG~C~i~ls~l 68 (91)
+-+|-|+|-|++ +-+|+|.+.|++-
T Consensus 25 LGSCVav~l~dp~~~igGm~H~mLP~~ 51 (157)
T PRK13488 25 LGSCVGIILYDRGKKIGGLAHVMLPES 51 (157)
T ss_pred CcCeEEEEEEcCCCCEEEEEEEECCCC
Confidence 678999999996 5589999999973
No 10
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=67.03 E-value=5.8 Score=29.91 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=22.3
Q ss_pred CccceeeEEEec--CCcceEEEeccCCC
Q psy4485 44 MTSGAVVSVVDF--GSGGWWFESKSNLG 69 (91)
Q Consensus 44 MT~CAGiC~y~~--g~gG~C~i~ls~l~ 69 (91)
+-+|-|+|-|++ +-+|+|.+.|+.-.
T Consensus 31 LGSCVaV~l~Dp~~~iGGm~H~mLP~~~ 58 (184)
T PRK13497 31 LGSCVAACLRDPVAGVGGMNHFLLPGSA 58 (184)
T ss_pred CccceEEEEEcCCCCEEEEEEEECCCCC
Confidence 678999999996 55999999999653
No 11
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=65.02 E-value=6.8 Score=29.93 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=22.0
Q ss_pred CccceeeEEEec--CCcceEEEeccCC
Q psy4485 44 MTSGAVVSVVDF--GSGGWWFESKSNL 68 (91)
Q Consensus 44 MT~CAGiC~y~~--g~gG~C~i~ls~l 68 (91)
+-+|-|+|-|++ +-+|+|.+.|++-
T Consensus 44 LGSCVaV~l~Dp~~~iGGm~H~mLP~~ 70 (201)
T PRK13487 44 LGSCVSACLRDPVLGIGGMNHFMLPDG 70 (201)
T ss_pred CcccEEEEEEcCCCCEEEEEEEECCCC
Confidence 779999999996 5599999999973
No 12
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=64.87 E-value=8.8 Score=28.19 Aligned_cols=26 Identities=15% Similarity=0.012 Sum_probs=22.2
Q ss_pred CccceeeEEEec--CCcceEEEeccCCC
Q psy4485 44 MTSGAVVSVVDF--GSGGWWFESKSNLG 69 (91)
Q Consensus 44 MT~CAGiC~y~~--g~gG~C~i~ls~l~ 69 (91)
+-+|-|+|-|++ +-+|+|.+.|++-.
T Consensus 27 LGSCVav~l~dp~~~igGm~H~mLP~~~ 54 (162)
T PRK13490 27 LGSCIGIALYDGIKCIGGLSHIMLPDST 54 (162)
T ss_pred CcceEEEEEEcCCCCEEEEEEEECCCCc
Confidence 678999999996 55899999999664
No 13
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=62.47 E-value=7.9 Score=29.85 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.6
Q ss_pred CccceeeEEEec--CCcceEEEeccCC
Q psy4485 44 MTSGAVVSVVDF--GSGGWWFESKSNL 68 (91)
Q Consensus 44 MT~CAGiC~y~~--g~gG~C~i~ls~l 68 (91)
+-+|-|+|-|++ +-||+|.+.|++-
T Consensus 37 LGSCVaV~LyDp~~~IGGM~H~mLP~~ 63 (199)
T PRK13491 37 LGSCICTCMCDPVAGVGGMNHFLLPSA 63 (199)
T ss_pred ccccEEEEEEcCCCCEEEEEEEECCCC
Confidence 668999999996 5599999999973
No 14
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=62.12 E-value=10 Score=28.11 Aligned_cols=25 Identities=16% Similarity=-0.082 Sum_probs=21.7
Q ss_pred CccceeeEEEec--CCcceEEEeccCC
Q psy4485 44 MTSGAVVSVVDF--GSGGWWFESKSNL 68 (91)
Q Consensus 44 MT~CAGiC~y~~--g~gG~C~i~ls~l 68 (91)
+-+|-|+|-|++ +-+|+|.+.|+.-
T Consensus 33 LGSCVaV~l~Dp~~~iGGm~H~mLP~~ 59 (163)
T PRK13494 33 LGSCVAVVLYDESRNLIGMNHYVLVKS 59 (163)
T ss_pred CcccEEEEEEcCCCCEEEEEEEECCCC
Confidence 679999999996 5589999999973
No 15
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=60.45 E-value=8.9 Score=29.57 Aligned_cols=25 Identities=16% Similarity=-0.037 Sum_probs=21.9
Q ss_pred CccceeeEEEec--CCcceEEEeccCC
Q psy4485 44 MTSGAVVSVVDF--GSGGWWFESKSNL 68 (91)
Q Consensus 44 MT~CAGiC~y~~--g~gG~C~i~ls~l 68 (91)
+-+|-|+|-|++ +-+|+|.+.|++-
T Consensus 51 LGSCVaV~l~Dp~~~iGGm~H~mLP~~ 77 (213)
T PRK13493 51 LGSCVSACAWDIEMKVGGMNHFLLPFN 77 (213)
T ss_pred CccceEEEEEcCCCCEEEEEEEEcCCC
Confidence 779999999996 5599999999965
No 16
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=57.89 E-value=8.1 Score=25.74 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.1
Q ss_pred CCcccccCCCCCHHHHHHHHHHH
Q psy4485 5 DSQWEVIDPTPDIHGLFVAFAKR 27 (91)
Q Consensus 5 D~~wEl~DP~PDIh~LF~~fN~~ 27 (91)
+|++++||++|.+...+..|+..
T Consensus 1 ~~~YPvId~dP~f~rVv~~~R~s 23 (86)
T PF10785_consen 1 KPPYPVIDSDPHFKRVVRYFRPS 23 (86)
T ss_pred CCCCCccCCCCCHHHHHHhCCHH
Confidence 58899999999999999988753
No 17
>PLN02975 complex I subunit
Probab=54.57 E-value=8.5 Score=26.88 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=21.4
Q ss_pred CCCCcccccCCCCCHHHHHHHHHHH
Q psy4485 3 LNDSQWEVIDPTPDIHGLFVAFAKR 27 (91)
Q Consensus 3 lvD~~wEl~DP~PDIh~LF~~fN~~ 27 (91)
+.-|++++||+.|-+...+.+|+..
T Consensus 5 ~~~P~YPlId~dP~f~rVv~yfr~s 29 (97)
T PLN02975 5 SDKPEYPVVDRNPTFTKVVGNFSAL 29 (97)
T ss_pred cCCCCCCccCCCCChHHHHHhCCHH
Confidence 3469999999999999999888764
No 18
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=49.81 E-value=35 Score=20.42 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=19.6
Q ss_pred CCCCCCccccc------CCCCCHHHHHHHHHHHH
Q psy4485 1 MSLNDSQWEVI------DPTPDIHGLFVAFAKRF 28 (91)
Q Consensus 1 ~slvD~~wEl~------DP~PDIh~LF~~fN~~f 28 (91)
|+.-||.|--- +.-||+-+||..+++++
T Consensus 1 MawNepg~~~~dPWg~~~gPPDLdel~r~l~~kl 34 (42)
T PF12221_consen 1 MAWNEPGNGDQDPWGRNQGPPDLDELFRKLQDKL 34 (42)
T ss_pred CCccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 55666665311 23599999999999875
No 19
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=48.24 E-value=6.5 Score=23.76 Aligned_cols=17 Identities=24% Similarity=0.092 Sum_probs=13.0
Q ss_pred ccceeeEEEecCCcceEE
Q psy4485 45 TSGAVVSVVDFGSGGWWF 62 (91)
Q Consensus 45 T~CAGiC~y~~g~gG~C~ 62 (91)
+=|-|+|.+. +..|+|.
T Consensus 2 SPCi~vC~~d-~~~~~C~ 18 (51)
T PF06945_consen 2 SPCIGVCKLD-PSDGVCR 18 (51)
T ss_pred CCCccccccC-CCCCccC
Confidence 3489999998 6677763
No 20
>PLN02343 allene oxide cyclase
Probab=42.17 E-value=18 Score=28.92 Aligned_cols=30 Identities=33% Similarity=0.426 Sum_probs=21.8
Q ss_pred eCCCCccceeeEEEec---CCcceEEEeccCCCCCceeecchhhhceeeec
Q psy4485 40 WSKRMTSGAVVSVVDF---GSGGWWFESKSNLGNPSFYRSSDFYRNIYTFH 87 (91)
Q Consensus 40 WSkRMT~CAGiC~y~~---g~gG~C~i~ls~l~~p~~~~~~~~~~~~~~~~ 87 (91)
..+|+-..||+|..-. +++| |-|..||+|+
T Consensus 102 L~kRlGiTaG~Cvliq~~pek~g------------------DryEa~ySfy 134 (229)
T PLN02343 102 LKKRLGITAGLCVLIQHVPEKKG------------------DRYEAIYSFY 134 (229)
T ss_pred hhhhhcccceeEEEEEeccccCC------------------ceeEEEEEEE
Confidence 3489999999996542 3444 7788888885
No 21
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=33.60 E-value=47 Score=25.24 Aligned_cols=26 Identities=23% Similarity=0.119 Sum_probs=21.4
Q ss_pred CCccceeeEEEec--CCcceEEEeccCC
Q psy4485 43 RMTSGAVVSVVDF--GSGGWWFESKSNL 68 (91)
Q Consensus 43 RMT~CAGiC~y~~--g~gG~C~i~ls~l 68 (91)
=+-+|.|+|-|++ +-+|+=.+.|++-
T Consensus 30 gLGSCV~v~l~D~~~~vgGm~H~mLP~s 57 (164)
T COG1871 30 GLGSCVGVCLRDPVNGVGGMNHFMLPDS 57 (164)
T ss_pred cccceEEEEEEccccCccceeEEeccCC
Confidence 4679999999996 6688888888873
No 22
>KOG0684|consensus
Probab=31.23 E-value=46 Score=29.15 Aligned_cols=34 Identities=24% Similarity=0.587 Sum_probs=22.9
Q ss_pred CCcccccC-CCCCHHHHHHHHHHHHhcCcCCCeEEEeCCCC
Q psy4485 5 DSQWEVID-PTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRM 44 (91)
Q Consensus 5 D~~wEl~D-P~PDIh~LF~~fN~~fF~g~L~~VeV~WSkRM 44 (91)
+=+||+|| |.|.+ +|+.+ =.+-.++|.|+|..|-
T Consensus 451 ~fdleLid~~~P~~-----d~s~~-v~~P~g~v~irYK~R~ 485 (486)
T KOG0684|consen 451 HFDLELIDGPFPEV-----DYSRM-VMQPEGDVRIRYKRRP 485 (486)
T ss_pred HcceeecCCCCCCC-----CHHHh-hcCCCCCceEEEeecC
Confidence 45899999 55543 24444 4455579999998774
No 23
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=28.36 E-value=38 Score=20.06 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=12.1
Q ss_pred EEEeCCCCccceee
Q psy4485 37 EVKWSKRMTSGAVV 50 (91)
Q Consensus 37 eV~WSkRMT~CAGi 50 (91)
.+.|||+|-+-|-.
T Consensus 16 ~~~w~P~mdLiA~~ 29 (47)
T PF12894_consen 16 CMSWCPTMDLIALG 29 (47)
T ss_pred EEEECCCCCEEEEE
Confidence 68999999998864
No 24
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=22.64 E-value=23 Score=20.23 Aligned_cols=21 Identities=24% Similarity=0.596 Sum_probs=16.5
Q ss_pred CCCccccc-CCCCCHHHHHHHH
Q psy4485 4 NDSQWEVI-DPTPDIHGLFVAF 24 (91)
Q Consensus 4 vD~~wEl~-DP~PDIh~LF~~f 24 (91)
-||.|..| +...+-.+||.+|
T Consensus 30 ~dpry~~i~~~~~~R~~lF~ey 51 (51)
T PF01846_consen 30 KDPRYKAIGDSESERESLFEEY 51 (51)
T ss_dssp TSCHHHHSTSCHHHHHHHHHHH
T ss_pred cCHHHHHhcCCHHHHHHHHHhC
Confidence 47888888 7777788888876
No 25
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=20.43 E-value=37 Score=19.15 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHhcCcCCCeEEEeC
Q psy4485 16 DIHGLFVAFAKRFFQDRLGSVEVKWS 41 (91)
Q Consensus 16 DIh~LF~~fN~~fF~g~L~~VeV~WS 41 (91)
|......++|...|.|+ .+.|.||
T Consensus 33 ~A~~a~~~l~~~~~~g~--~l~V~~a 56 (56)
T PF13893_consen 33 DAQKAIEQLNGRQFNGR--PLKVSYA 56 (56)
T ss_dssp HHHHHHHHHTTSEETTE--EEEEEEE
T ss_pred HHHHHHHHhCCCEECCc--EEEEEEC
Confidence 45567778898888887 5888886
Done!