Query psy4485
Match_columns 91
No_of_seqs 92 out of 101
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 18:19:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4485.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4485hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f9z_C Protein (chemotaxis met 70.3 2.8 9.4E-05 29.8 2.6 26 44-69 26-53 (159)
2 2vok_A 52 kDa RO protein; poly 41.8 48 0.0017 23.2 5.0 18 36-53 66-83 (188)
3 2fbe_A Predicted: similar to R 40.2 50 0.0017 23.4 4.9 18 36-53 67-84 (201)
4 1weq_A PHD finger protein 7; s 29.3 17 0.00059 23.7 0.9 9 5-14 4-12 (85)
5 4ae8_A Thioesterase superfamil 21.1 42 0.0014 24.0 1.7 25 2-31 18-42 (211)
6 1wh2_A Hypothetical protein AT 21.1 25 0.00084 22.2 0.4 32 3-34 15-52 (78)
7 4b3n_A Maltose-binding peripla 18.5 80 0.0027 24.9 2.9 17 36-52 474-490 (602)
8 1whv_A Poly(A)-specific ribonu 18.4 18 0.0006 24.5 -0.8 19 15-42 30-48 (100)
9 3ctr_A Poly(A)-specific ribonu 18.1 18 0.00061 24.5 -0.8 27 15-51 20-46 (101)
10 2kmu_A ATP-dependent DNA helic 17.1 59 0.002 19.6 1.5 19 9-27 31-50 (56)
No 1
>2f9z_C Protein (chemotaxis methylation protein); bacterial chemotaxis, signal transduction, receptor deamidas aspartyl phosphatase, protein complex; 2.40A {Thermotoga maritima} SCOP: d.194.1.3
Probab=70.35 E-value=2.8 Score=29.82 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=21.3
Q ss_pred CccceeeEEEec--CCcceEEEeccCCC
Q psy4485 44 MTSGAVVSVVDF--GSGGWWFESKSNLG 69 (91)
Q Consensus 44 MT~CAGiC~y~~--g~gG~C~i~ls~l~ 69 (91)
+-+|-|+|-|++ +-+|+|.+.|+.-.
T Consensus 26 LGSCVav~l~Dp~~~iGGm~H~mLP~~~ 53 (159)
T 2f9z_C 26 LGSCVAVCMRDPVAKVGAMAHVMLPDSG 53 (159)
T ss_dssp ESSCEEEEEEETTTTEEEEEEECBSCCS
T ss_pred CcCeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 557999999996 44999999998543
No 2
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=41.78 E-value=48 Score=23.22 Aligned_cols=18 Identities=17% Similarity=-0.044 Sum_probs=14.2
Q ss_pred eEEEeCCCCccceeeEEE
Q psy4485 36 VEVKWSKRMTSGAVVSVV 53 (91)
Q Consensus 36 VeV~WSkRMT~CAGiC~y 53 (91)
=||+|+..-.-.-|+|+-
T Consensus 66 WEVev~~~~~w~vGV~~~ 83 (188)
T 2vok_A 66 WEVDVTQKEAWDLGVCRD 83 (188)
T ss_dssp EEEECTTCSCEEEEEEET
T ss_pred EEEEecCCceEEEEEeeC
Confidence 488898877778899963
No 3
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22
Probab=40.23 E-value=50 Score=23.37 Aligned_cols=18 Identities=17% Similarity=-0.088 Sum_probs=14.2
Q ss_pred eEEEeCCCCccceeeEEE
Q psy4485 36 VEVKWSKRMTSGAVVSVV 53 (91)
Q Consensus 36 VeV~WSkRMT~CAGiC~y 53 (91)
=||+|+.+..-.-|+|+-
T Consensus 67 WEVev~~~~~w~vGV~~~ 84 (201)
T 2fbe_A 67 WEVDVGTSQVWDVGVCKE 84 (201)
T ss_dssp EEEECTTCSEEEEEEEET
T ss_pred EEEEeCCCCEEEEEEeeC
Confidence 488888877778899963
No 4
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=29.34 E-value=17 Score=23.67 Aligned_cols=9 Identities=33% Similarity=0.486 Sum_probs=6.5
Q ss_pred CCcccccCCC
Q psy4485 5 DSQWEVIDPT 14 (91)
Q Consensus 5 D~~wEl~DP~ 14 (91)
|+.||+ ||+
T Consensus 4 DAsWEl-e~n 12 (85)
T 1weq_A 4 GSSGEL-EPG 12 (85)
T ss_dssp CCCCCC-CTT
T ss_pred CCcccc-CcC
Confidence 788886 654
No 5
>4ae8_A Thioesterase superfamily member 4; hydrolase, hotdog-fold; 1.59A {Homo sapiens} PDB: 4gah_A*
Probab=21.11 E-value=42 Score=23.98 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=19.0
Q ss_pred CCCCCcccccCCCCCHHHHHHHHHHHHhcC
Q psy4485 2 SLNDSQWEVIDPTPDIHGLFVAFAKRFFQD 31 (91)
Q Consensus 2 slvD~~wEl~DP~PDIh~LF~~fN~~fF~g 31 (91)
+|=.|.|- ||+..||+||++..=.|
T Consensus 18 ~~~~~~~~-----~~~~~~~~~~~~~~~~~ 42 (211)
T 4ae8_A 18 SVPNPSWN-----KDLRLLFDQFMKKCEDG 42 (211)
T ss_dssp SSCCTTCC-----HHHHHHHHHHHHHTTTS
T ss_pred cCCCCccC-----HHHHHHHHHHHhhCcCC
Confidence 34456665 89999999999987544
No 6
>1wh2_A Hypothetical protein AT5G08430; GYF domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} SCOP: d.76.1.1
Probab=21.09 E-value=25 Score=22.20 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=25.1
Q ss_pred CCCCcccccCCCCCHH------HHHHHHHHHHhcCcCC
Q psy4485 3 LNDSQWEVIDPTPDIH------GLFVAFAKRFFQDRLG 34 (91)
Q Consensus 3 lvD~~wEl~DP~PDIh------~LF~~fN~~fF~g~L~ 34 (91)
.-+..|+.+||.-.|+ +|-.-|..-||...|.
T Consensus 15 ~~~~~W~Y~Dp~g~iQGPFs~~~M~~W~~~GyF~~~L~ 52 (78)
T 1wh2_A 15 KEKLNWLYKDPQGLVQGPFSLTQLKAWSDAEYFTKQFR 52 (78)
T ss_dssp SSSCCEEEECTTSCEEEEECHHHHHHHHTTTSSCSCCE
T ss_pred cccCeEEEECCCCCCcCCcCHHHHHHHHHcCCCCCCce
Confidence 4456899999987665 7778888899987664
No 7
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=18.49 E-value=80 Score=24.93 Aligned_cols=17 Identities=29% Similarity=0.020 Sum_probs=12.0
Q ss_pred eEEEeCCCCccceeeEE
Q psy4485 36 VEVKWSKRMTSGAVVSV 52 (91)
Q Consensus 36 VeV~WSkRMT~CAGiC~ 52 (91)
=||+++.+-.=.-|+|+
T Consensus 474 WEV~v~~~~~w~~Gv~~ 490 (602)
T 4b3n_A 474 WEVDVSKKSAWILGVCA 490 (602)
T ss_dssp EEEECTTCSCEEEEEEC
T ss_pred EEEEECCCeeEEEEEee
Confidence 37888877665678884
No 8
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=18.37 E-value=18 Score=24.49 Aligned_cols=19 Identities=37% Similarity=0.920 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHhcCcCCCeEEEeCC
Q psy4485 15 PDIHGLFVAFAKRFFQDRLGSVEVKWSK 42 (91)
Q Consensus 15 PDIh~LF~~fN~~fF~g~L~~VeV~WSk 42 (91)
-||..||..| ++|.|+|=+
T Consensus 30 ~DI~~lFs~f---------ggv~I~Wid 48 (100)
T 1whv_A 30 SDLYQLFSAF---------GNIQISWID 48 (100)
T ss_dssp HHHHHHHTTT---------CSCCCEEEE
T ss_pred HHHHHHhhcc---------CCEEEEEEc
Confidence 3789999887 499999965
No 9
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=18.11 E-value=18 Score=24.49 Aligned_cols=27 Identities=37% Similarity=0.684 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHhcCcCCCeEEEeCCCCccceeeE
Q psy4485 15 PDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVS 51 (91)
Q Consensus 15 PDIh~LF~~fN~~fF~g~L~~VeV~WSkRMT~CAGiC 51 (91)
-||..||..| ++|.|+|=+- |+|-++-
T Consensus 20 ~Di~~lFs~f---------ggv~I~WidD-TsAlvvf 46 (101)
T 3ctr_A 20 SDLYQLFSAF---------GNIQISWIDD-TSAFVSL 46 (101)
T ss_dssp HHHHHHTTTS---------EEEEEEEEET-TEEEEEE
T ss_pred HHHHHHHhcc---------CCEEEEEEcC-CeEEEEe
Confidence 4788888887 4999999763 4554444
No 10
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=17.13 E-value=59 Score=19.56 Aligned_cols=19 Identities=11% Similarity=0.471 Sum_probs=15.5
Q ss_pred cccCCCCC-HHHHHHHHHHH
Q psy4485 9 EVIDPTPD-IHGLFVAFAKR 27 (91)
Q Consensus 9 El~DP~PD-Ih~LF~~fN~~ 27 (91)
+-|--+|+ |.++|.+|+.+
T Consensus 31 ~DIk~~p~~I~~~YK~Y~~L 50 (56)
T 2kmu_A 31 DDVEAAPEETRALYREYRTL 50 (56)
T ss_dssp HHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHH
Confidence 34567899 99999999975
Done!