Query psy4485
Match_columns 91
No_of_seqs 92 out of 101
Neff 3.1
Searched_HMMs 13730
Date Fri Aug 16 18:19:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4485.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4485hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f9zc1 d.194.1.3 (C:1-157) Ch 66.0 2.3 0.00017 28.5 3.1 26 44-69 24-51 (157)
2 d2pjsa1 d.32.1.2 (A:3-113) Unc 25.1 6.9 0.00051 21.3 -0.0 22 65-86 5-26 (111)
3 d1kf6b2 d.15.4.2 (B:1-105) Fum 20.3 23 0.0017 21.7 1.8 55 11-70 30-86 (105)
4 d1x5sa1 d.58.7.1 (A:8-97) Cold 19.4 53 0.0038 17.8 3.1 33 16-54 21-53 (90)
5 d1iruk_ d.153.1.4 (K:) Proteas 19.3 38 0.0027 20.2 2.6 42 44-90 1-42 (199)
6 d2brja1 b.159.1.1 (A:15-188) A 17.4 17 0.0012 25.1 0.6 13 42-54 48-60 (174)
7 d1rk8a_ d.58.7.1 (A:) RNA-bind 17.4 42 0.003 18.5 2.3 24 31-54 32-55 (88)
8 d2cqca1 d.58.7.1 (A:109-191) A 16.1 52 0.0038 17.6 2.5 32 16-53 25-56 (83)
9 d1e4ra_ g.9.1.1 (A:) Beta-defe 15.0 8 0.00058 20.5 -1.3 8 47-54 9-16 (35)
10 d1jmxg_ a.137.9.1 (G:) Quinohe 12.9 37 0.0027 20.6 1.3 12 3-15 8-19 (77)
No 1
>d2f9zc1 d.194.1.3 (C:1-157) Chemoreceptor glutamine deamidase CheD {Thermotoga maritima [TaxId: 2336]}
Probab=65.99 E-value=2.3 Score=28.46 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=21.7
Q ss_pred CccceeeEEEec--CCcceEEEeccCCC
Q psy4485 44 MTSGAVVSVVDF--GSGGWWFESKSNLG 69 (91)
Q Consensus 44 MT~CAGiC~y~~--g~gG~C~i~ls~l~ 69 (91)
+-+|-|+|-|++ +-+|+|.+.|+.=.
T Consensus 24 LGSCVav~l~Dp~~~iGGm~H~mLP~~~ 51 (157)
T d2f9zc1 24 LGSCVAVCMRDPVAKVGAMAHVMLPDSG 51 (157)
T ss_dssp ESSCEEEEEEETTTTEEEEEEECBSCCS
T ss_pred CcCeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 568999999996 55899999999643
No 2
>d2pjsa1 d.32.1.2 (A:3-113) Uncharacterized protein Atu1953 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=25.11 E-value=6.9 Score=21.29 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=18.1
Q ss_pred ccCCCCCceeecchhhhceeee
Q psy4485 65 KSNLGNPSFYRSSDFYRNIYTF 86 (91)
Q Consensus 65 ls~l~~p~~~~~~~~~~~~~~~ 86 (91)
..+|.++..-++.+||+++.-|
T Consensus 5 ~~~l~v~d~~~a~~FY~~~lG~ 26 (111)
T d2pjsa1 5 VANIATPEPARAQAFYGDILGM 26 (111)
T ss_dssp EEEEECSCGGGGHHHHTTTTCC
T ss_pred EEEEEeCCHHHHHHHHHHhhCC
Confidence 4678889999999999988654
No 3
>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.31 E-value=23 Score=21.73 Aligned_cols=55 Identities=11% Similarity=0.030 Sum_probs=37.2
Q ss_pred cCCCCCHHHHHHHHHHHHhcCcCCCeEEEeCCCCccceeeEEEec-CCcce-EEEeccCCCC
Q psy4485 11 IDPTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDF-GSGGW-WFESKSNLGN 70 (91)
Q Consensus 11 ~DP~PDIh~LF~~fN~~fF~g~L~~VeV~WSkRMT~CAGiC~y~~-g~gG~-C~i~ls~l~~ 70 (91)
++|..-+-++-.+.++. .=+++..++|-|+..| |.|-... |+..+ |.-...+++.
T Consensus 30 ~~~~~tvLd~L~~Ik~~----~d~sLsfr~sCr~giC-GsCam~ING~~~LAC~t~v~~~~~ 86 (105)
T d1kf6b2 30 YDATTSLLDALGYIKDN----LAPDLSYRWSCRMAIC-GSCGMMVNNVPKLACKTFLRDYTD 86 (105)
T ss_dssp ECTTCBHHHHHHHHHHH----TCTTCCCCCCCSSSSS-CCCEEEETTEEEEGGGCBGGGCTT
T ss_pred cCCCCcHHHHHHHHHHh----cCCcceEEeccCCCCC-CCCeEEECCcccccceeEeeccCC
Confidence 35666677777666653 2356789999999999 9998885 44444 5555555544
No 4
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.45 E-value=53 Score=17.84 Aligned_cols=33 Identities=12% Similarity=0.236 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHhcCcCCCeEEEeCCCCccceeeEEEe
Q psy4485 16 DIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVD 54 (91)
Q Consensus 16 DIh~LF~~fN~~fF~g~L~~VeV~WSkRMT~CAGiC~y~ 54 (91)
||.++|.+| |.+..+.+...+.-..+-|.|..+
T Consensus 21 ~l~~~F~~~------G~i~~~~~~~~~~~~~~~g~afV~ 53 (90)
T d1x5sa1 21 SLEQVFSKY------GQISEVVVVKDRETQRSRGFGFVT 53 (90)
T ss_dssp HHHHHHHHH------SCCCEEEECCCSSSCSCCSEEEEE
T ss_pred HHHHhhhcc------ccccceeeccccccccccceEEEE
Confidence 566666654 677777777766555555555444
No 5
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.29 E-value=38 Score=20.19 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=28.8
Q ss_pred CccceeeEEEecCCcceEEEeccCCCCCceeecchhhhceeeecccc
Q psy4485 44 MTSGAVVSVVDFGSGGWWFESKSNLGNPSFYRSSDFYRNIYTFHNSV 90 (91)
Q Consensus 44 MT~CAGiC~y~~g~gG~C~i~ls~l~~p~~~~~~~~~~~~~~~~~~~ 90 (91)
||-+.|+. +++|..+..-+.++....-.+ +-.+.|+.+++.+
T Consensus 1 Mt~ivgi~----~kdgVviaaD~r~~~g~~~~~-~~~~Ki~~i~~~i 42 (199)
T d1iruk_ 1 MEYLIGIQ----GPDYVLVASDRVAASNIVQMK-DDHDKMFKMSEKI 42 (199)
T ss_dssp CCCEEEEE----CSSEEEEEEECCEEETTEEEE-SSCCCEEECSSSE
T ss_pred CeEEEEEE----ECCEEEEEECCCccCCCeeec-CCcceEEEecCcE
Confidence 88889986 466777777667766665443 4457888877643
No 6
>d2brja1 b.159.1.1 (A:15-188) Allene oxide cyclase, AOC {Thale cress (Arabidopsis thaliana), chloroplast AOC2 [TaxId: 3702]}
Probab=17.39 E-value=17 Score=25.14 Aligned_cols=13 Identities=38% Similarity=0.245 Sum_probs=10.5
Q ss_pred CCCccceeeEEEe
Q psy4485 42 KRMTSGAVVSVVD 54 (91)
Q Consensus 42 kRMT~CAGiC~y~ 54 (91)
+|+-..||+|..-
T Consensus 48 kRlGitaG~C~li 60 (174)
T d2brja1 48 KRVGITAGLCVVI 60 (174)
T ss_dssp CEEEEEEEEEEEE
T ss_pred hhccceeeEEEEE
Confidence 7888899999654
No 7
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=17.37 E-value=42 Score=18.48 Aligned_cols=24 Identities=8% Similarity=0.231 Sum_probs=14.3
Q ss_pred CcCCCeEEEeCCCCccceeeEEEe
Q psy4485 31 DRLGSVEVKWSKRMTSGAVVSVVD 54 (91)
Q Consensus 31 g~L~~VeV~WSkRMT~CAGiC~y~ 54 (91)
|.+..|.|...+.=..+-|.|..+
T Consensus 32 G~i~~v~i~~d~~tg~~~g~afV~ 55 (88)
T d1rk8a_ 32 GEIKNIHLNLDRRTGFSKGYALVE 55 (88)
T ss_dssp SCEEEEEEEECTTTSSEEEEEEEE
T ss_pred CCcccccccccccccccccceeEE
Confidence 667778888765433444555443
No 8
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.07 E-value=52 Score=17.64 Aligned_cols=32 Identities=13% Similarity=0.364 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHhcCcCCCeEEEeCCCCccceeeEEE
Q psy4485 16 DIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVV 53 (91)
Q Consensus 16 DIh~LF~~fN~~fF~g~L~~VeV~WSkRMT~CAGiC~y 53 (91)
||.++|.+| |.+-.|.|...+.--.+-|.|..
T Consensus 25 ~l~~~F~~~------G~i~~v~i~~~~~~~~~~g~afV 56 (83)
T d2cqca1 25 DLREVFSKY------GPIADVSIVYDQQSRRSRGFAFV 56 (83)
T ss_dssp HHHHHHHTT------SCEEEEEEEECSSSSSEEEEEEE
T ss_pred HHHHHHHHh------CCCccccccccccccccccceEE
Confidence 455666553 56667777776543344444433
No 9
>d1e4ra_ g.9.1.1 (A:) Beta-defensin, BD {Mouse (Mus musculus), MBD6 [TaxId: 10090]}
Probab=15.04 E-value=8 Score=20.52 Aligned_cols=8 Identities=0% Similarity=-0.085 Sum_probs=5.9
Q ss_pred ceeeEEEe
Q psy4485 47 GAVVSVVD 54 (91)
Q Consensus 47 CAGiC~y~ 54 (91)
-+|||.|.
T Consensus 9 nggicqyr 16 (35)
T d1e4ra_ 9 NGGICQYR 16 (35)
T ss_dssp GTCEEESC
T ss_pred cCCEEEEE
Confidence 36888886
No 10
>d1jmxg_ a.137.9.1 (G:) Quinohemoprotein amine dehydrogenase C chain {Pseudomonas putida [TaxId: 303]}
Probab=12.92 E-value=37 Score=20.59 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=8.6
Q ss_pred CCCCcccccCCCC
Q psy4485 3 LNDSQWEVIDPTP 15 (91)
Q Consensus 3 lvD~~wEl~DP~P 15 (91)
..||-|| +|++-
T Consensus 8 t~dPGWE-vD~fG 19 (77)
T d1jmxg_ 8 TTDPGWE-VDAFG 19 (77)
T ss_dssp CCSSCSS-SCTTS
T ss_pred ccCCCce-ecCCc
Confidence 4689999 47653
Done!