RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4485
(91 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.12
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 38 VKWSKRMTSGAVVSVVDFGSGG 59
VKW A ++DFG GG
Sbjct: 488 VKWETTTQFKAT-HILDFGPGG 508
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 25.5 bits (56), Expect = 1.5
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 47 GAVVSVVDFGSGGWWF 62
G V V++ GWW+
Sbjct: 30 GVEVQVLEKQESGWWY 45
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 24.8 bits (55), Expect = 1.8
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 47 GAVVSVVDFGSGGWWF 62
G +++ + GGWW
Sbjct: 23 GEIITNIRKEDGGWWE 38
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 25.7 bits (57), Expect = 2.0
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 11 IDPTPDIH-GLFVAFAK-RFFQDRLGSVEVK 39
+P+ +IH G + K Q+ G E+
Sbjct: 39 YEPSGEIHLGHMMTVQKLMDLQE-AG-FEII 67
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 25.7 bits (57), Expect = 2.1
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 11 IDPTPDIH-GLFVAFAK-RFFQDRLGSVEVK 39
+P+ IH G ++ K Q+ G ++
Sbjct: 35 FEPSGKIHLGHYLQIKKMIDLQN-AG-FDII 63
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 71
Score = 25.0 bits (55), Expect = 2.2
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 47 GAVVSVVDFGSGGWWF 62
G V V+ GWW+
Sbjct: 30 GVTVEVIRKNLEGWWY 45
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 25.6 bits (57), Expect = 2.4
Identities = 3/15 (20%), Positives = 5/15 (33%)
Query: 10 VIDPTPDIHGLFVAF 24
I P+ + A
Sbjct: 324 YIGRHPEDSRILFAA 338
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 24.6 bits (54), Expect = 2.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 44 MTSGAVVSVVDFGSGGWWF 62
+ +G VV V++ GWWF
Sbjct: 27 LQAGEVVDVIEKNESGWWF 45
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 23.8 bits (52), Expect = 4.7
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 47 GAVVSVVDFGSGGWWF 62
A++ V+ GGWW
Sbjct: 28 SAIIQNVEKQEGGWWR 43
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 24.0 bits (52), Expect = 5.7
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 47 GAVVSVVDFGSGGWWF 62
G V V++ S GWW
Sbjct: 39 GTKVIVMEKCSDGWWR 54
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 23.8 bits (52), Expect = 5.8
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 47 GAVVSVVDFGSGGWWF 62
G ++ V + WW+
Sbjct: 28 GDIIRVFFKDNEDWWY 43
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 24.6 bits (54), Expect = 6.0
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 10 VIDPTPDIHGLFVAFA 25
+ID P+ + +A
Sbjct: 326 IIDLHPEHSNVVIAAG 341
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 23.4 bits (51), Expect = 7.0
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 47 GAVVSVVDFGSGGWWF 62
G ++ V+ G GWW
Sbjct: 30 GDILEVILEGEDGWWT 45
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 24.2 bits (52), Expect = 7.1
Identities = 5/14 (35%), Positives = 7/14 (50%), Gaps = 2/14 (14%)
Query: 57 SGGWWFES--KSNL 68
GGWW+ +N
Sbjct: 403 GGGWWYNRCHAANP 416
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B*
1deq_B 2a45_H*
Length = 461
Score = 24.2 bits (52), Expect = 7.6
Identities = 5/14 (35%), Positives = 7/14 (50%), Gaps = 2/14 (14%)
Query: 57 SGGWWFES--KSNL 68
GGWW+ +N
Sbjct: 399 GGGWWYNRCHAANP 412
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 24.0 bits (53), Expect = 8.0
Identities = 2/15 (13%), Positives = 7/15 (46%)
Query: 10 VIDPTPDIHGLFVAF 24
I +++ ++A
Sbjct: 317 AIGRIEELNDYYIAA 331
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 23.6 bits (51), Expect = 8.1
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 44 MTSGAVVSVVDFGSGGWWFESKSNLGNP 71
G + V++ GWW+ + P
Sbjct: 28 FQEGVSMEVLERNPNGWWYCQILDGVKP 55
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 24.1 bits (52), Expect = 8.1
Identities = 4/14 (28%), Positives = 5/14 (35%), Gaps = 2/14 (14%)
Query: 57 SGGWWFES--KSNL 68
GWW +L
Sbjct: 331 GSGWWMNKCHAGHL 344
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma
1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus}
PDB: 1ywp_A 1ywo_A
Length = 61
Score = 22.9 bits (50), Expect = 8.1
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 47 GAVVSVVDFGSGGWWF 62
A++ V+ GGWW
Sbjct: 25 SAIIQNVEKQDGGWWR 40
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Length = 409
Score = 24.1 bits (52), Expect = 8.4
Identities = 4/14 (28%), Positives = 5/14 (35%), Gaps = 2/14 (14%)
Query: 57 SGGWWFES--KSNL 68
GWW +L
Sbjct: 331 GSGWWMNRCHAGHL 344
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 24.2 bits (53), Expect = 8.5
Identities = 3/16 (18%), Positives = 5/16 (31%)
Query: 10 VIDPTPDIHGLFVAFA 25
+ID P +
Sbjct: 319 IIDTLPGHDNTLLITG 334
>3hag_A Capsid protein; jelly-roll beta sheets, beta barrel, icosahedral
virus; 3.50A {Hepatitis e virus type 4} PDB: 2zzq_A
2ztn_A
Length = 504
Score = 24.0 bits (51), Expect = 8.8
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 11/49 (22%)
Query: 37 EVKWSKRMTSGAVVSVV--------DFGSGGWWFESK---SNLGNPSFY 74
EV +T + + +GG F S+ S G P+
Sbjct: 253 EVGRGIALTLFNLADTLLGGLPTELISSAGGQLFYSRPVVSANGEPTVK 301
>3lo7_A PBPA, penicillin-binding protein A; transpeptidase domain, cell
membrane, cell shape, cell WALL biogenesis/degradation,
membrane; 2.05A {Mycobacterium tuberculosis}
Length = 483
Score = 24.2 bits (53), Expect = 9.2
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 6 SQWEVIDPTPDIHGLFVAFA 25
++ H ++AFA
Sbjct: 420 AEHGTDPRHTPPHAWYIAFA 439
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.438
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,503,982
Number of extensions: 75615
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 50
Length of query: 91
Length of database: 6,701,793
Length adjustment: 58
Effective length of query: 33
Effective length of database: 5,082,375
Effective search space: 167718375
Effective search space used: 167718375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)