RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4485
         (91 letters)



>d2d3qa1 d.58.4.14 (A:4-442) Decolorizing peroxidase DyP
          {Geotrichum candidum [TaxId: 27317]}
          Length = 439

 Score = 23.6 bits (50), Expect = 4.7
 Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 11/69 (15%)

Query: 3  LNDSQWEVIDPTPDIHGLFVAFA-----------KRFFQDRLGSVEVKWSKRMTSGAVVS 51
          LN+ Q +++         FV F            K +  +R+ S  +  S          
Sbjct: 5  LNNIQGDILVGMKKQKERFVFFQVNDATSFKTALKTYVPERITSAAILISDPSQQPLAFV 64

Query: 52 VVDFGSGGW 60
           + F + G 
Sbjct: 65 NLGFSNTGL 73


>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes
          simplex virus 1 [TaxId: 10298]}
          Length = 1122

 Score = 23.6 bits (51), Expect = 5.2
 Identities = 4/14 (28%), Positives = 7/14 (50%)

Query: 75 RSSDFYRNIYTFHN 88
            S +  ++Y FH 
Sbjct: 78 TPSHYSSSVYVFHG 91


>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha
           chain {Escherichia coli [TaxId: 562]}
          Length = 1074

 Score = 22.9 bits (48), Expect = 9.0
 Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 1/52 (1%)

Query: 13  PTPDIHGLFVAFAKRFFQDRLGSVEVKWSKRMTSGAVVSVVDFGSGGWWFES 64
           P P +  +  A   R+    +G   + +          S   +G      ES
Sbjct: 190 PIPAMSMVSYASGARYLS-LIGGTCLSFYDWYCDLPPASPQTWGEQTDVPES 240


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.438 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 382,831
Number of extensions: 14975
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 12
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)