Query psy4486
Match_columns 203
No_of_seqs 166 out of 305
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 18:20:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4486.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4486hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3977|consensus 100.0 1.5E-62 3.2E-67 415.4 15.1 199 1-199 1-205 (221)
2 PF00992 Troponin: Troponin; 100.0 6.7E-42 1.5E-46 274.7 6.1 129 44-173 1-132 (132)
3 KOG3634|consensus 99.7 3.5E-16 7.6E-21 142.0 12.6 100 35-135 176-278 (361)
4 PF00992 Troponin: Troponin; 85.8 1 2.2E-05 36.4 3.6 37 63-100 96-132 (132)
5 KOG1029|consensus 71.2 31 0.00067 36.3 9.5 21 12-32 337-357 (1118)
6 COG4839 FtsL Protein required 52.9 24 0.00052 28.6 4.1 37 100-136 59-95 (120)
7 KOG1144|consensus 52.0 55 0.0012 34.5 7.4 26 5-30 231-256 (1064)
8 PF01486 K-box: K-box region; 51.9 57 0.0012 24.5 5.9 47 83-135 42-88 (100)
9 PF09726 Macoilin: Transmembra 51.8 1.6E+02 0.0036 30.1 10.7 119 6-134 499-655 (697)
10 PF10234 Cluap1: Clusterin-ass 50.7 61 0.0013 29.4 6.8 88 49-143 127-223 (267)
11 TIGR02231 conserved hypothetic 48.8 1.9E+02 0.0042 27.7 10.3 51 86-136 123-173 (525)
12 PF10044 Ret_tiss: Retinal tis 48.4 18 0.00038 28.1 2.6 24 84-107 55-78 (95)
13 KOG2507|consensus 46.4 43 0.00094 32.8 5.4 64 11-76 209-272 (506)
14 KOG4196|consensus 43.9 88 0.0019 25.9 6.1 24 83-106 20-44 (135)
15 PHA03011 hypothetical protein; 42.7 1E+02 0.0022 24.7 6.1 47 90-136 67-113 (120)
16 PF04859 DUF641: Plant protein 41.8 1.9E+02 0.0042 23.6 9.4 77 53-136 44-122 (131)
17 PRK04863 mukB cell division pr 40.0 5.4E+02 0.012 28.9 13.0 71 80-150 428-501 (1486)
18 KOG3866|consensus 37.7 66 0.0014 30.6 5.1 34 80-118 218-251 (442)
19 COG1340 Uncharacterized archae 37.5 1E+02 0.0022 28.5 6.2 51 90-140 168-218 (294)
20 PF08581 Tup_N: Tup N-terminal 35.9 1.5E+02 0.0034 22.0 5.9 32 105-136 22-53 (79)
21 KOG1029|consensus 35.8 4.2E+02 0.009 28.4 10.7 17 124-140 488-504 (1118)
22 PF06034 DUF919: Nucleopolyhed 33.6 91 0.002 22.5 4.2 47 90-138 8-54 (62)
23 PF11544 Spc42p: Spindle pole 31.4 28 0.00061 26.1 1.3 29 111-139 8-36 (76)
24 PF10779 XhlA: Haemolysin XhlA 30.4 2E+02 0.0044 20.4 5.9 47 90-136 2-48 (71)
25 PF07889 DUF1664: Protein of u 29.1 1.7E+02 0.0036 23.7 5.5 75 52-137 41-118 (126)
26 PF11559 ADIP: Afadin- and alp 29.0 2.4E+02 0.0051 22.4 6.4 49 88-136 29-80 (151)
27 KOG2412|consensus 26.3 7E+02 0.015 25.3 10.8 57 90-150 297-353 (591)
28 PRK04325 hypothetical protein; 26.2 75 0.0016 23.2 2.8 27 110-136 11-37 (74)
29 smart00540 LEM in nuclear memb 26.1 41 0.00089 22.5 1.3 17 83-99 2-18 (44)
30 COG3883 Uncharacterized protei 25.9 1.2E+02 0.0027 27.5 4.7 51 90-140 55-105 (265)
31 KOG0163|consensus 25.9 5.7E+02 0.012 27.5 9.8 21 12-32 935-955 (1259)
32 COG5085 Predicted membrane pro 25.4 1.7E+02 0.0036 26.2 5.2 39 62-105 124-162 (230)
33 KOG4503|consensus 25.4 1.7E+02 0.0036 26.2 5.2 39 62-105 124-162 (230)
34 PRK04406 hypothetical protein; 25.3 1.4E+02 0.003 21.9 4.1 33 104-136 7-39 (75)
35 smart00513 SAP Putative DNA-bi 24.8 65 0.0014 19.8 1.9 16 85-100 2-17 (35)
36 KOG1655|consensus 24.5 1.9E+02 0.0042 25.6 5.4 59 99-157 17-83 (218)
37 cd00520 RRF Ribosome recycling 23.9 4.3E+02 0.0094 22.1 8.3 66 35-105 97-169 (179)
38 PF09755 DUF2046: Uncharacteri 23.2 1.7E+02 0.0037 27.2 5.1 44 93-136 105-149 (310)
39 PRK00295 hypothetical protein; 22.8 1.2E+02 0.0025 21.8 3.2 24 112-135 9-32 (68)
40 TIGR00496 frr ribosome recycli 22.6 4.7E+02 0.01 22.0 7.6 53 35-92 92-144 (176)
41 COG1340 Uncharacterized archae 22.5 1.9E+02 0.0041 26.8 5.3 45 90-134 44-88 (294)
42 PF08232 Striatin: Striatin fa 21.7 1.6E+02 0.0034 23.7 4.1 38 98-135 29-73 (134)
43 PF02037 SAP: SAP domain; Int 21.5 60 0.0013 20.2 1.3 16 84-99 1-16 (35)
44 PF04508 Pox_A_type_inc: Viral 20.8 84 0.0018 18.5 1.7 13 123-135 2-14 (23)
45 PF12718 Tropomyosin_1: Tropom 20.8 3.3E+02 0.0073 22.0 5.9 46 89-134 2-47 (143)
46 KOG1853|consensus 20.0 2.4E+02 0.0053 26.1 5.4 47 88-134 99-145 (333)
No 1
>KOG3977|consensus
Probab=100.00 E-value=1.5e-62 Score=415.45 Aligned_cols=199 Identities=45% Similarity=0.618 Sum_probs=183.5
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHhhHHHHHhhhhcCCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCC
Q psy4486 1 MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVIEQRCGT 80 (203)
Q Consensus 1 ~~~~~~~~r~~~E~~rk~aE~rkR~eE~~~kkKakk~kms~~RK~~LksllL~kA~~~L~kEk~~k~eeKkk~LaER~~P 80 (203)
|.|.++++|+++++++++||+|+|++|++..+++++||+||+|+++|++|||++|+++|++++..+++||.+||++|+.|
T Consensus 1 ~~dg~~~~rka~~re~kk~evrkrleeA~~~~~~KKgfltpeRKkkLrkLlm~kAaedLkqqq~~kEqErqr~LaeR~i~ 80 (221)
T KOG3977|consen 1 EVDGDDAARKAQEREAKKAEVRKRLEEAGMPKKEKKGFLTPERKKKLRKLLMQKAAEDLKQQQELKEQERQRYLAERTIP 80 (221)
T ss_pred CCccchhhhhccchhHHHHHHHHHHHHhcccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 57888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCH-HHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhcCCCCcchhhhhcchH-HHHHH--
Q psy4486 81 HKDWTNADE-ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKVSKYEN-KFAKL-- 156 (203)
Q Consensus 81 l~~idgLs~-~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrGKfkkP~LkkV~~sa~-~~~~l-- 156 (203)
|||+|+++. ..|+++|++||.+|+.||+|+|||+++|.++..||++|+|+||||+|||++|+|++||+|++ |+.++
T Consensus 81 lp~~d~l~d~g~Lq~ly~~l~arv~~leEEkYDi~~~v~qt~~EIndLtikvnDLRGKFvkPtLkkVsks~~kf~ka~~~ 160 (221)
T KOG3977|consen 81 LPDVDSLDDRGLLQDLYRELHARVDALEEEKYDIEAKVTQTETEINDLTIKVNDLRGKFVKPTLKKVSKSADKFLKALLG 160 (221)
T ss_pred CCCCCcccchHHHHHHHHHHHHHHHHHHHhhcchhheeehhhhhHHHHHHHHHHhcccccCccHHHHHhhhHHHHHHhhc
Confidence 999999886 66999999999999999999999999999999999999999999999999999999999994 44555
Q ss_pred hhhhhccchhhhccccccchhhhhH--HhhhcccccccccCCccc
Q psy4486 157 QKKAAEFNFRNQLKVVKKKEFTLEE--EEKEKKPEWTKVGGDKGK 199 (203)
Q Consensus 157 ~k~~~~~d~RanLK~VkKe~~~~~e--~~~~~~~dWrkn~e~k~~ 199 (203)
++|+++||||||||+|||+++..+. +.+.+||||||||+...+
T Consensus 161 ~k~~~k~DlRanLK~VKKed~~~e~~~kkk~ek~dW~K~~~~~~~ 205 (221)
T KOG3977|consen 161 SKHKVKMDLRANLKQVKKEDTEKERPNKKKREKGDWRKNIEPESG 205 (221)
T ss_pred cchhhhHHHHHHHHHhhhhhHHHhhhhhhcccchhhhhccCcccc
Confidence 3689999999999999999764332 234689999999988654
No 2
>PF00992 Troponin: Troponin; InterPro: IPR001978 The troponin (Tn) complex regulates Ca2+ induced muscle contraction. Tn contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin [, , ].; PDB: 1J1D_C 1MXL_I 1LXF_I 2KRD_I 1J1E_F 2L1R_B 2KGB_I 1YTZ_I 1YV0_I 1VDJ_A ....
Probab=100.00 E-value=6.7e-42 Score=274.72 Aligned_cols=129 Identities=43% Similarity=0.541 Sum_probs=120.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhH
Q psy4486 44 KKKLRLLLRKKAAEELKKEQERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAE 123 (203)
Q Consensus 44 K~~LksllL~kA~~~L~kEk~~k~eeKkk~LaER~~Pl~~idgLs~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~E 123 (203)
|++|++||+.+|..++..++..+++++.+||++||||+ +|||+|.++|+++|++||++|+.||+|+||+|++|.+++||
T Consensus 1 K~~lK~L~~~kA~~el~~e~~~keeek~~~L~eri~~l-~~~g~~~~eL~~~~k~lh~ri~~leeEryd~E~kv~k~~~E 79 (132)
T PF00992_consen 1 KRMLKDLLLLKAKIELHFEQRKKEEEKRRYLAERIPPL-KLDGLSRAELQELCKELHERIDKLEEERYDLEEKVAKQDYE 79 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCTSS---GTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 46899999999999999999999999999999999999 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcchhhhhcch-HHHHHH--hhhhhccchhhhccccc
Q psy4486 124 ITELNAQVNDLRGKFIKPTLKKVSKYE-NKFAKL--QKKAAEFNFRNQLKVVK 173 (203)
Q Consensus 124 I~eL~~kV~DLrGKfkkP~LkkV~~sa-~~~~~l--~k~~~~~d~RanLK~Vk 173 (203)
|++|+++|+|++|+|+||+||+|++|+ +|..++ .+|.+++|||+|||+|+
T Consensus 80 i~elk~kv~d~rgkfkkp~lkkvkk~~~~~~~~~l~~k~~~~~~lr~~lK~vk 132 (132)
T PF00992_consen 80 IEELKKKVNDLRGKFKKPTLKKVKKSADAMRRKLLGIKHKVSMDLRANLKEVK 132 (132)
T ss_dssp HHHHCCCCCCCCCSHCCHHHHHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHcccccchHHHHHHHHHHHHHHhhhCcccccHHHHHHHhhccC
Confidence 999999999999999999999999999 454444 37899999999999996
No 3
>KOG3634|consensus
Probab=99.68 E-value=3.5e-16 Score=141.99 Aligned_cols=100 Identities=23% Similarity=0.305 Sum_probs=78.2
Q ss_pred cCCCCChHHHhhhHHHHHHHH--HHHHHH-HHHHHHHHHhHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhh
Q psy4486 35 KKGFMTPERKKKLRLLLRKKA--AEELKK-EQERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKY 111 (203)
Q Consensus 35 kk~kms~~RK~~LksllL~kA--~~~L~k-Ek~~k~eeKkk~LaER~~Pl~~idgLs~~~Lqe~ckELh~~I~~lEeErY 111 (203)
.+++.|-+-+..-.+.+..++ ..+.+- ..++..+.|..+|+.|..|| +||+|+.++|++++++||++|++|+.++|
T Consensus 176 ~gknftvakk~a~~~~fgn~~qak~e~~mtKeQqEdakk~~l~aiRkk~~-~~~~~~e~~LkeKiKELhqrI~kLE~EKy 254 (361)
T KOG3634|consen 176 AGKNFTVAKKGAQNDGFGNIVQAKQEMGMTKEQQEDAKKKFLLAIRKKPL-NISELPENDLKEKIKELHQRICKLETEKY 254 (361)
T ss_pred ccCcceeecccccchhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccc-ccccCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445555554432234444443 233332 34556688888899999888 99999999999999999999999999999
Q ss_pred cHHHHHhhhhhHHHHHHHHHHHhh
Q psy4486 112 DLEIIFRVKEAEITELNAQVNDLR 135 (203)
Q Consensus 112 DlE~Kv~kq~~EI~eL~~kV~DLr 135 (203)
||+.+..+|+|+|++|+.|+.+.+
T Consensus 255 DLekR~eRQeYDlkeL~eRqrq~~ 278 (361)
T KOG3634|consen 255 DLEKRHERQEYDLKELNERQRQVQ 278 (361)
T ss_pred hHHHHHHhhhccHHHHHHHHHHHH
Confidence 999999999999999999998764
No 4
>PF00992 Troponin: Troponin; InterPro: IPR001978 The troponin (Tn) complex regulates Ca2+ induced muscle contraction. Tn contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin [, , ].; PDB: 1J1D_C 1MXL_I 1LXF_I 2KRD_I 1J1E_F 2L1R_B 2KGB_I 1YTZ_I 1YV0_I 1VDJ_A ....
Probab=85.77 E-value=1 Score=36.44 Aligned_cols=37 Identities=11% Similarity=-0.011 Sum_probs=32.2
Q ss_pred HHHHHHHHhHHhhhhcCCCCCCCCCCHHHHHHHHHHHH
Q psy4486 63 QERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELW 100 (203)
Q Consensus 63 k~~k~eeKkk~LaER~~Pl~~idgLs~~~Lqe~ckELh 100 (203)
+.+....+..+++.+..|| +++|++..+|++.++++|
T Consensus 96 kp~lkkvkk~~~~~~~~~l-~~k~~~~~~lr~~lK~vk 132 (132)
T PF00992_consen 96 KPTLKKVKKSADAMRRKLL-GIKHKVSMDLRANLKEVK 132 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CTTCSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhh-CcccccHHHHHHHhhccC
Confidence 4456667788999999888 999999999999999987
No 5
>KOG1029|consensus
Probab=71.23 E-value=31 Score=36.25 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=9.9
Q ss_pred HHHHHhHHHHHHhhHHHHHhh
Q psy4486 12 AEIDRKRAEVRKRMEEASKAK 32 (203)
Q Consensus 12 ~E~~rk~aE~rkR~eE~~~kk 32 (203)
+|.++|++|++.++|-++..|
T Consensus 337 eeqqqreree~eqkEreE~ek 357 (1118)
T KOG1029|consen 337 EEQQQREREEVEQKEREEEEK 357 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544444433333
No 6
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=52.91 E-value=24 Score=28.63 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=32.7
Q ss_pred HHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhc
Q psy4486 100 WDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 136 (203)
Q Consensus 100 h~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrG 136 (203)
...+.++-.+--||++++..+..++.+|.+.|+||..
T Consensus 59 q~~~yqvq~ei~~Le~kIs~q~~e~~dlkqeV~dLss 95 (120)
T COG4839 59 QTKAYQVQGEITDLESKISEQKTENDDLKQEVKDLSS 95 (120)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhcc
Confidence 4566778888889999999999999999999999965
No 7
>KOG1144|consensus
Probab=51.98 E-value=55 Score=34.50 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhHHHHHHhhHHHHH
Q psy4486 5 AAKKAKQAEIDRKRAEVRKRMEEASK 30 (203)
Q Consensus 5 ~~~~r~~~E~~rk~aE~rkR~eE~~~ 30 (203)
+..+|.++|+.|+.+|+++|++|.++
T Consensus 231 E~qkreeEE~~r~eeEEer~~ee~E~ 256 (1064)
T KOG1144|consen 231 ERQKREEEERLRREEEEERRREEEEA 256 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888877766665443
No 8
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=51.88 E-value=57 Score=24.45 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=37.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhh
Q psy4486 83 DWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLR 135 (203)
Q Consensus 83 ~idgLs~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLr 135 (203)
+|++||..+|+.+=..|...+..|-+-+..+ -..+|..|+.++..|.
T Consensus 42 dL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~------l~~~i~~l~~ke~~l~ 88 (100)
T PF01486_consen 42 DLESLSLKELQQLEQQLESALKRVRSRKDQL------LMEQIEELKKKERELE 88 (100)
T ss_pred cccccchHHHHHHHHhhhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998776643 3455777777766654
No 9
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=51.84 E-value=1.6e+02 Score=30.05 Aligned_cols=119 Identities=23% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHH-HhhHHHHHhhhh---------cCCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q psy4486 6 AKKAKQAEIDRKRAEVR-KRMEEASKAKKA---------KKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVIE 75 (203)
Q Consensus 6 ~~~r~~~E~~rk~aE~r-kR~eE~~~kkKa---------kk~kms~~RK~~LksllL~kA~~~L~kEk~~k~eeKkk~La 75 (203)
+.++....-+...+++| .|++|++.+.++ --+-.--.|+.. |-.=-..|..+-..+++.....-.
T Consensus 499 eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~-----lE~E~~~lr~elk~kee~~~~~e~ 573 (697)
T PF09726_consen 499 EERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQ-----LESELKKLRRELKQKEEQIRELES 573 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcCCCCCC---CCCCHHHH-------------------------HHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHH
Q psy4486 76 QRCGTHKDW---TNADEATV-------------------------NKILKELWDRAFKLESEKYDLEIIFRVKEAEITEL 127 (203)
Q Consensus 76 ER~~Pl~~i---dgLs~~~L-------------------------qe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL 127 (203)
+.-..- .. +.-+.+.| ++|-.-|.+.-.+|| .++..+.+++.||.+|
T Consensus 574 ~~~~lr-~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~e----i~~~~~~~~d~ei~~l 648 (697)
T PF09726_consen 574 ELQELR-KYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLE----IAQGQLRKKDKEIEEL 648 (697)
T ss_pred HHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHh
Q psy4486 128 NAQVNDL 134 (203)
Q Consensus 128 ~~kV~DL 134 (203)
+.+|.++
T Consensus 649 k~ki~~~ 655 (697)
T PF09726_consen 649 KAKIAQL 655 (697)
T ss_pred HHHHHHH
No 10
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=50.65 E-value=61 Score=29.43 Aligned_cols=88 Identities=19% Similarity=0.321 Sum_probs=65.6
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHhHHhhhhcCCCCCCCCCCH------HHHHHHHHHHHHHHHhhhhhhhcHHHHHhh
Q psy4486 49 LLLRKKAAE---ELKKEQERKAAERRRVIEQRCGTHKDWTNADE------ATVNKILKELWDRAFKLESEKYDLEIIFRV 119 (203)
Q Consensus 49 sllL~kA~~---~L~kEk~~k~eeKkk~LaER~~Pl~~idgLs~------~~Lqe~ckELh~~I~~lEeErYDlE~Kv~k 119 (203)
|=|.+.++. .|++|- ..++.+...++ .|+ +|+++.. ..++.-+..+-+.|+.|..+-=.|+.|+.+
T Consensus 127 seit~~GA~LydlL~kE~-~lr~~R~~a~~---r~~-e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIek 201 (267)
T PF10234_consen 127 SEITQRGASLYDLLGKEV-ELREERQRALA---RPL-ELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEK 201 (267)
T ss_pred HHHHHHHHHHHHHHhchH-hHHHHHHHHHc---CCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555554 356555 67777888887 356 6766321 335566677777899999999999999999
Q ss_pred hhhHHHHHHHHHHHhhcCCCCcch
Q psy4486 120 KEAEITELNAQVNDLRGKFIKPTL 143 (203)
Q Consensus 120 q~~EI~eL~~kV~DLrGKfkkP~L 143 (203)
...|+.-...|..-|+. +||+.
T Consensus 202 kk~ELER~qKRL~sLq~--vRPAf 223 (267)
T PF10234_consen 202 KKQELERNQKRLQSLQS--VRPAF 223 (267)
T ss_pred HHHHHHHHHHHHHHHHh--cChHH
Confidence 99999999999999998 77864
No 11
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=48.79 E-value=1.9e+02 Score=27.70 Aligned_cols=51 Identities=20% Similarity=0.133 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhc
Q psy4486 86 NADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 136 (203)
Q Consensus 86 gLs~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrG 136 (203)
+.+..+|.++..-+..++..+..+.++++..+.....+|..|..++..|.|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 123 EPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 457899999999999999999999999999999999999999999999988
No 12
>PF10044 Ret_tiss: Retinal tissue protein; InterPro: IPR018737 Rtp is a family of proteins of approximately 112 amino acids in length which is conserved from nematodes to humans. The proposed tertiary structure is of almost entirely alpha helix interrupted only by loops located at proline residues. Three sites in the protein sequence reveal two types of possible post-translation modification. A serine residue, at position 41, is a candidate for protein kinase C phosphorylation. Glycine residues at position 69 and 91 are probable sites for acetylation by covalent amide linkage of myristate via N-myristoyl transferase. Rtp is differentially expressed in the trout retina between parr and smolt developmental stages (smoltification). It is likely to be a house-keeping protein [].
Probab=48.37 E-value=18 Score=28.14 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=19.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhh
Q psy4486 84 WTNADEATVNKILKELWDRAFKLE 107 (203)
Q Consensus 84 idgLs~~~Lqe~ckELh~~I~~lE 107 (203)
++.|+.++|.+..+.||+++++|=
T Consensus 55 Ls~Lt~~~L~~~Ik~L~~~aYqLG 78 (95)
T PF10044_consen 55 LSSLTPDQLIEKIKKLQDEAYQLG 78 (95)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHh
Confidence 567788889999999999988763
No 13
>KOG2507|consensus
Probab=46.40 E-value=43 Score=32.78 Aligned_cols=64 Identities=25% Similarity=0.361 Sum_probs=48.4
Q ss_pred HHHHHHhHHHHHHhhHHHHHhhhhcCCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q psy4486 11 QAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVIEQ 76 (203)
Q Consensus 11 ~~E~~rk~aE~rkR~eE~~~kkKakk~kms~~RK~~LksllL~kA~~~L~kEk~~k~eeKkk~LaE 76 (203)
|--.+++++|++.-.++.-.++++++--+++.++. .-=.+.++.+....|+.+....|++|+++
T Consensus 209 qkr~Ek~kee~~hekeee~~rr~agkE~~~~~a~~--~ee~tkrm~eqrkrer~e~~aareRI~aq 272 (506)
T KOG2507|consen 209 QKRVEKTKEEVEHEKEEEPLRRQAGKEPIRPTAPG--TEENTKRMREQRKRERKEGTAARERILAQ 272 (506)
T ss_pred ccchhhhHHHHHHHhhhhhHhhhhccccccccccc--chHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33456667777777777777888888888877654 23447778888888999999999999874
No 14
>KOG4196|consensus
Probab=43.95 E-value=88 Score=25.88 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=17.6
Q ss_pred CCCCCCHHHHHHH-HHHHHHHHHhh
Q psy4486 83 DWTNADEATVNKI-LKELWDRAFKL 106 (203)
Q Consensus 83 ~idgLs~~~Lqe~-ckELh~~I~~l 106 (203)
+.|+||+++|-.+ ++||..++..+
T Consensus 20 ~~d~lsDd~LvsmSVReLNr~LrG~ 44 (135)
T KOG4196|consen 20 GGDRLSDDELVSMSVRELNRHLRGL 44 (135)
T ss_pred CCCCcCHHHHHHhhHHHHHHHhcCC
Confidence 6799999998766 66776666533
No 15
>PHA03011 hypothetical protein; Provisional
Probab=42.69 E-value=1e+02 Score=24.66 Aligned_cols=47 Identities=32% Similarity=0.391 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhc
Q psy4486 90 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 136 (203)
Q Consensus 90 ~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrG 136 (203)
++|..-..+|.+--.-++.++-|++.-+..++-+|.-|+..|.-|+.
T Consensus 67 deL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ 113 (120)
T PHA03011 67 DELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKE 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 45666677777778889999999999999999999999999987753
No 16
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=41.80 E-value=1.9e+02 Score=23.56 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCC--HHHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHH
Q psy4486 53 KKAAEELKKEQERKAAERRRVIEQRCGTHKDWTNAD--EATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQ 130 (203)
Q Consensus 53 ~kA~~~L~kEk~~k~eeKkk~LaER~~Pl~~idgLs--~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~k 130 (203)
+-|..-.-.|-....+=|..|..-...|.|....+. .+++|.+.+-+.-.+..| +.-+...|-||..|+.+
T Consensus 44 ~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kL-------e~e~~~Kdsei~~Lr~~ 116 (131)
T PF04859_consen 44 QAADEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKL-------EAELRAKDSEIDRLREK 116 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 345555566677788889999887766554443332 366777777766666664 45688889999999999
Q ss_pred HHHhhc
Q psy4486 131 VNDLRG 136 (203)
Q Consensus 131 V~DLrG 136 (203)
+.++..
T Consensus 117 L~~~~~ 122 (131)
T PF04859_consen 117 LDELNR 122 (131)
T ss_pred HHHHHH
Confidence 988754
No 17
>PRK04863 mukB cell division protein MukB; Provisional
Probab=40.01 E-value=5.4e+02 Score=28.86 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=59.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHH---hhcCCCCcchhhhhcch
Q psy4486 80 THKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVND---LRGKFIKPTLKKVSKYE 150 (203)
Q Consensus 80 Pl~~idgLs~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~D---LrGKfkkP~LkkV~~sa 150 (203)
.+..+++||.++|+..-..+.+++..+..+.-+++.++......+..++...+. ..|+..++..-.+-.+.
T Consensus 428 ~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~ 501 (1486)
T PRK04863 428 QLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVAREL 501 (1486)
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 344678899999999999999999999999999999999999999999998887 57877776655554443
No 18
>KOG3866|consensus
Probab=37.75 E-value=66 Score=30.59 Aligned_cols=34 Identities=15% Similarity=0.473 Sum_probs=26.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcHHHHHh
Q psy4486 80 THKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFR 118 (203)
Q Consensus 80 Pl~~idgLs~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~ 118 (203)
|-.|.+| |.++|+ +.|.-.|.||-..||--.-+.
T Consensus 218 pKvnhPG-SkdQLk----EVWEE~DgLdpn~fdPKTFF~ 251 (442)
T KOG3866|consen 218 PKVNHPG-SKDQLK----EVWEESDGLDPNQFDPKTFFA 251 (442)
T ss_pred ccCCCCC-cHHHHH----HHHHHhcCCCcccCCcchhee
Confidence 3348999 888885 678889999999998665554
No 19
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=37.49 E-value=1e+02 Score=28.49 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhcCCCC
Q psy4486 90 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIK 140 (203)
Q Consensus 90 ~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrGKfkk 140 (203)
++|...+.+||..|..|-.+==.+-..+...-.++.+++-+++.+--+|+.
T Consensus 168 ~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve 218 (294)
T COG1340 168 DELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVE 218 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777766665555555666656666666666666555554
No 20
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=35.93 E-value=1.5e+02 Score=22.01 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=27.0
Q ss_pred hhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhc
Q psy4486 105 KLESEKYDLEIIFRVKEAEITELNAQVNDLRG 136 (203)
Q Consensus 105 ~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrG 136 (203)
.+...+=|++.++..|-.||+.++..|.+|--
T Consensus 22 ~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~ 53 (79)
T PF08581_consen 22 SYKHQKDEYEHKINSQIQEMQQIRQKVYELEQ 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34447778899999999999999999999864
No 21
>KOG1029|consensus
Probab=35.81 E-value=4.2e+02 Score=28.39 Aligned_cols=17 Identities=35% Similarity=0.630 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhhcCCCC
Q psy4486 124 ITELNAQVNDLRGKFIK 140 (203)
Q Consensus 124 I~eL~~kV~DLrGKfkk 140 (203)
|..|..+|.+++-+.-+
T Consensus 488 i~qlqarikE~q~kl~~ 504 (1118)
T KOG1029|consen 488 IDQLQARIKELQEKLQK 504 (1118)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44455556555554433
No 22
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=33.57 E-value=91 Score=22.47 Aligned_cols=47 Identities=15% Similarity=0.324 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhcCC
Q psy4486 90 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKF 138 (203)
Q Consensus 90 ~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrGKf 138 (203)
++|.++|.-=++ -.+....|.--.++.++-.|+.++..+++++|-.|
T Consensus 8 ~QLd~I~~~K~~--l~ik~~H~Ekl~kitK~p~El~~i~~kl~~~R~~F 54 (62)
T PF06034_consen 8 QQLDEINQMKRQ--LTIKSQHWEKLKKITKNPKELQEIEKKLQELRQNF 54 (62)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 455555553333 34566677778889999999999999999998765
No 23
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=31.43 E-value=28 Score=26.13 Aligned_cols=29 Identities=41% Similarity=0.554 Sum_probs=24.1
Q ss_pred hcHHHHHhhhhhHHHHHHHHHHHhhcCCC
Q psy4486 111 YDLEIIFRVKEAEITELNAQVNDLRGKFI 139 (203)
Q Consensus 111 YDlE~Kv~kq~~EI~eL~~kV~DLrGKfk 139 (203)
=||-.++...+.||.-|++=|..|+||..
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLi 36 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLI 36 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788889999999999999999543
No 24
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=30.36 E-value=2e+02 Score=20.39 Aligned_cols=47 Identities=19% Similarity=0.223 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhc
Q psy4486 90 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 136 (203)
Q Consensus 90 ~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrG 136 (203)
+++++....++..++.++..-=.+|.....++..|..++.++.++.+
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888887777777888888888889999998888765
No 25
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=29.06 E-value=1.7e+02 Score=23.75 Aligned_cols=75 Identities=16% Similarity=0.214 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHH---HHHHHHhHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHH
Q psy4486 52 RKKAAEELKKEQE---RKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELN 128 (203)
Q Consensus 52 L~kA~~~L~kEk~---~k~eeKkk~LaER~~Pl~~idgLs~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~ 128 (203)
|..|...+.+.-. ..-..=++.|..|+- ++|. +.|+..++.+.+-+.+..+- ..+..-..+|..+.
T Consensus 41 m~~A~~~v~kql~~vs~~l~~tKkhLsqRId---~vd~-klDe~~ei~~~i~~eV~~v~-------~dv~~i~~dv~~v~ 109 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVSESLSSTKKHLSQRID---RVDD-KLDEQKEISKQIKDEVTEVR-------EDVSQIGDDVDSVQ 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh-hHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHH
Confidence 4555555443221 223334567788885 4565 77777777776666554444 44455555566666
Q ss_pred HHHHHhhcC
Q psy4486 129 AQVNDLRGK 137 (203)
Q Consensus 129 ~kV~DLrGK 137 (203)
..|..|.||
T Consensus 110 ~~V~~Le~k 118 (126)
T PF07889_consen 110 QMVEGLEGK 118 (126)
T ss_pred HHHHHHHHH
Confidence 666666554
No 26
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=29.03 E-value=2.4e+02 Score=22.44 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHHHHHhhhhh---hhcHHHHHhhhhhHHHHHHHHHHHhhc
Q psy4486 88 DEATVNKILKELWDRAFKLESE---KYDLEIIFRVKEAEITELNAQVNDLRG 136 (203)
Q Consensus 88 s~~~Lqe~ckELh~~I~~lEeE---rYDlE~Kv~kq~~EI~eL~~kV~DLrG 136 (203)
+.+.+..+|+=+|+-|...+.+ +=++..++....++|..|+..|..|..
T Consensus 29 ~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~ 80 (151)
T PF11559_consen 29 SEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKE 80 (151)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5677888999999888877765 557888889999999999999988865
No 27
>KOG2412|consensus
Probab=26.33 E-value=7e+02 Score=25.34 Aligned_cols=57 Identities=21% Similarity=0.332 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhcCCCCcchhhhhcch
Q psy4486 90 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKVSKYE 150 (203)
Q Consensus 90 ~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrGKfkkP~LkkV~~sa 150 (203)
+.+..-..-.|..++.+-.-+-|++.=+.+.+-++..++.. ++. -.-|+|--++.|.
T Consensus 297 ~~~~~ds~m~w~~~d~i~q~k~d~v~pi~~kd~~lk~~~~~---~kr-~in~~~~qis~~~ 353 (591)
T KOG2412|consen 297 TSSASDSQMFWNSQDAIAQSKLDLVNPILKKDEELKNYNQS---LKR-AINPPFSQISKSN 353 (591)
T ss_pred CCchhHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHh-hcCCChhhhhhcc
Confidence 34557777788878888888889988888777666666554 333 3458888888887
No 28
>PRK04325 hypothetical protein; Provisional
Probab=26.18 E-value=75 Score=23.15 Aligned_cols=27 Identities=33% Similarity=0.335 Sum_probs=18.1
Q ss_pred hhcHHHHHhhhhhHHHHHHHHHHHhhc
Q psy4486 110 KYDLEIIFRVKEAEITELNAQVNDLRG 136 (203)
Q Consensus 110 rYDlE~Kv~kq~~EI~eL~~kV~DLrG 136 (203)
=-|||.++.-|+.-|.+||.-|...+.
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~ 37 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQ 37 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777776666554
No 29
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=26.13 E-value=41 Score=22.55 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=14.2
Q ss_pred CCCCCCHHHHHHHHHHH
Q psy4486 83 DWTNADEATVNKILKEL 99 (203)
Q Consensus 83 ~idgLs~~~Lqe~ckEL 99 (203)
+++.||.++|+..|.++
T Consensus 2 d~~~LSd~eL~~~L~~~ 18 (44)
T smart00540 2 DVDRLSDAELRAELKQY 18 (44)
T ss_pred chhHcCHHHHHHHHHHc
Confidence 67889999999998864
No 30
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.92 E-value=1.2e+02 Score=27.52 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhcCCCC
Q psy4486 90 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIK 140 (203)
Q Consensus 90 ~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrGKfkk 140 (203)
+.|..-+.++...|+.++++-=-+...+++...+|.+|+.+|.+..-.|++
T Consensus 55 ~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 55 ESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666777888888999999999888776654
No 31
>KOG0163|consensus
Probab=25.91 E-value=5.7e+02 Score=27.48 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=14.1
Q ss_pred HHHHHhHHHHHHhhHHHHHhh
Q psy4486 12 AEIDRKRAEVRKRMEEASKAK 32 (203)
Q Consensus 12 ~E~~rk~aE~rkR~eE~~~kk 32 (203)
.||.||+||+..|+|+++.++
T Consensus 935 ~ER~rrEaeek~rre~ee~k~ 955 (1259)
T KOG0163|consen 935 AERKRREAEEKRRREEEEKKR 955 (1259)
T ss_pred HHHHhhhhhHHHHHHHHHHHH
Confidence 466777787777777766543
No 32
>COG5085 Predicted membrane protein [Function unknown]
Probab=25.42 E-value=1.7e+02 Score=26.18 Aligned_cols=39 Identities=8% Similarity=0.095 Sum_probs=32.9
Q ss_pred HHHHHHHHHhHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy4486 62 EQERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFK 105 (203)
Q Consensus 62 Ek~~k~eeKkk~LaER~~Pl~~idgLs~~~Lqe~ckELh~~I~~ 105 (203)
.+.+-+.-+..||.-+|-|.+-++. |-++|.+|-+-++.
T Consensus 124 ~q~q~a~ck~~Yl~n~Cd~~~rvPA-----i~E~C~kwkqcm~~ 162 (230)
T COG5085 124 IQHQIAECKTSYLINKCDPATRVPA-----IEELCSKWKQCMKN 162 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCcc-----HHHHHHHHHHHHhc
Confidence 4566778899999999998866666 89999999888877
No 33
>KOG4503|consensus
Probab=25.42 E-value=1.7e+02 Score=26.18 Aligned_cols=39 Identities=8% Similarity=0.095 Sum_probs=32.9
Q ss_pred HHHHHHHHHhHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy4486 62 EQERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFK 105 (203)
Q Consensus 62 Ek~~k~eeKkk~LaER~~Pl~~idgLs~~~Lqe~ckELh~~I~~ 105 (203)
.+.+-+.-+..||.-+|-|.+-++. |-++|.+|-+-++.
T Consensus 124 ~q~q~a~ck~~Yl~n~Cd~~~rvPA-----i~E~C~kwkqcm~~ 162 (230)
T KOG4503|consen 124 IQHQIAECKTSYLINKCDPATRVPA-----IEELCSKWKQCMKN 162 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCcc-----HHHHHHHHHHHHhc
Confidence 4566778899999999998866666 89999999888877
No 34
>PRK04406 hypothetical protein; Provisional
Probab=25.30 E-value=1.4e+02 Score=21.91 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=20.8
Q ss_pred HhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhc
Q psy4486 104 FKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 136 (203)
Q Consensus 104 ~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrG 136 (203)
+.+++-=-|||.++..++.-|.+||.-|...+.
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~ 39 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALSQQQL 39 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444456677777777777777776665543
No 35
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=24.81 E-value=65 Score=19.77 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=12.9
Q ss_pred CCCCHHHHHHHHHHHH
Q psy4486 85 TNADEATVNKILKELW 100 (203)
Q Consensus 85 dgLs~~~Lqe~ckELh 100 (203)
..|+.++|+++|+.+.
T Consensus 2 ~~l~~~~Lk~~l~~~g 17 (35)
T smart00513 2 AKLKVSELKDELKKRG 17 (35)
T ss_pred CcCcHHHHHHHHHHcC
Confidence 5688899999998653
No 36
>KOG1655|consensus
Probab=24.52 E-value=1.9e+02 Score=25.59 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=45.0
Q ss_pred HHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhcCCCCcch--------hhhhcchHHHHHHh
Q psy4486 99 LWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTL--------KKVSKYENKFAKLQ 157 (203)
Q Consensus 99 Lh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrGKfkkP~L--------kkV~~sa~~~~~l~ 157 (203)
|.+.|+.|+.--=.++.|+.+.+.+|-.++.+|.-.|---.+|+| |.-+||+++..+|.
T Consensus 17 L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~ 83 (218)
T KOG1655|consen 17 LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLD 83 (218)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777778899999999999999999988765666654 44577777777774
No 37
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=23.93 E-value=4.3e+02 Score=22.11 Aligned_cols=66 Identities=18% Similarity=0.157 Sum_probs=40.5
Q ss_pred cCCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCCHHH-------HHHHHHHHHHHHHh
Q psy4486 35 KKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVIEQRCGTHKDWTNADEAT-------VNKILKELWDRAFK 105 (203)
Q Consensus 35 kk~kms~~RK~~LksllL~kA~~~L~kEk~~k~eeKkk~LaER~~Pl~~idgLs~~~-------Lqe~ckELh~~I~~ 105 (203)
.-+.||.+||..| .+.|....+.-+..-+--|+.++.. ++.+..-.++|+|+ +|.+...+-..|+.
T Consensus 97 ~iP~lT~E~R~~l----vK~~k~~~E~~Kv~iRniR~~~~~~-lKk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~ 169 (179)
T cd00520 97 NLPPLTEERRKEL----VKDAKKIAEEAKVAIRNIRRDANDK-IKKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDE 169 (179)
T ss_pred cCCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999998875 5556666666677777778777765 43342333466544 45555544444443
No 38
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=23.17 E-value=1.7e+02 Score=27.24 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhhhhhhcHHHHHhh-hhhHHHHHHHHHHHhhc
Q psy4486 93 NKILKELWDRAFKLESEKYDLEIIFRV-KEAEITELNAQVNDLRG 136 (203)
Q Consensus 93 qe~ckELh~~I~~lEeErYDlE~Kv~k-q~~EI~eL~~kV~DLrG 136 (203)
.-+.+.|-.+|.+|-.++-+++..+.. |.|.|+-|..+|..|..
T Consensus 105 E~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~ 149 (310)
T PF09755_consen 105 EFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEK 149 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999988 88999999999999965
No 39
>PRK00295 hypothetical protein; Provisional
Probab=22.85 E-value=1.2e+02 Score=21.80 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=12.9
Q ss_pred cHHHHHhhhhhHHHHHHHHHHHhh
Q psy4486 112 DLEIIFRVKEAEITELNAQVNDLR 135 (203)
Q Consensus 112 DlE~Kv~kq~~EI~eL~~kV~DLr 135 (203)
|||.++.-++.-|.+||.-|...+
T Consensus 9 ~LE~kla~qE~tie~Ln~~v~~Qq 32 (68)
T PRK00295 9 ELESRQAFQDDTIQALNDVLVEQQ 32 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555554443
No 40
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=22.63 E-value=4.7e+02 Score=22.00 Aligned_cols=53 Identities=19% Similarity=0.133 Sum_probs=35.0
Q ss_pred cCCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCCHHHH
Q psy4486 35 KKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVIEQRCGTHKDWTNADEATV 92 (203)
Q Consensus 35 kk~kms~~RK~~LksllL~kA~~~L~kEk~~k~eeKkk~LaER~~Pl~~idgLs~~~L 92 (203)
.-+.||.+||..| .+.|....+.-+..-+--|+.++.. ++.+..-.++|+|++
T Consensus 92 ~iP~lT~E~Rkel----vK~~k~~~E~aKv~iRniRr~~~~~-iKk~~k~~~iseD~~ 144 (176)
T TIGR00496 92 NFPPLTEERRKEL----VKHAKKIAEQAKVAVRNVRRDANDK-VKKLEKDKEISEDEE 144 (176)
T ss_pred cCCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCChhHH
Confidence 3578999998875 5556666676777778888888775 333422345676554
No 41
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=22.49 E-value=1.9e+02 Score=26.76 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHh
Q psy4486 90 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDL 134 (203)
Q Consensus 90 ~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DL 134 (203)
++|...+++|-+.+..+-+.|=.|...|..-...-+++|.+++.|
T Consensus 44 deln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL 88 (294)
T COG1340 44 DELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQEL 88 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555444444444444443
No 42
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=21.73 E-value=1.6e+02 Score=23.74 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=19.8
Q ss_pred HHHHHHHhhhhhhh-------cHHHHHhhhhhHHHHHHHHHHHhh
Q psy4486 98 ELWDRAFKLESEKY-------DLEIIFRVKEAEITELNAQVNDLR 135 (203)
Q Consensus 98 ELh~~I~~lEeErY-------DlE~Kv~kq~~EI~eL~~kV~DLr 135 (203)
||-.+|..|++|+= ||--+|+.-.|.+...+.+...+.
T Consensus 29 EmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~ 73 (134)
T PF08232_consen 29 EMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLK 73 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34455555555543 555555555555555555554443
No 43
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=21.50 E-value=60 Score=20.17 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=12.7
Q ss_pred CCCCCHHHHHHHHHHH
Q psy4486 84 WTNADEATVNKILKEL 99 (203)
Q Consensus 84 idgLs~~~Lqe~ckEL 99 (203)
++.|+..+|++.|+.+
T Consensus 1 l~~l~v~eLk~~l~~~ 16 (35)
T PF02037_consen 1 LSKLTVAELKEELKER 16 (35)
T ss_dssp TTTSHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHHHC
Confidence 3568889999999865
No 44
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=20.81 E-value=84 Score=18.55 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhh
Q psy4486 123 EITELNAQVNDLR 135 (203)
Q Consensus 123 EI~eL~~kV~DLr 135 (203)
||+.|+.+|.||-
T Consensus 2 E~~rlr~rI~dLe 14 (23)
T PF04508_consen 2 EMNRLRNRISDLE 14 (23)
T ss_pred hHHHHHHHHHHHH
Confidence 5667777777764
No 45
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=20.77 E-value=3.3e+02 Score=22.02 Aligned_cols=46 Identities=30% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHh
Q psy4486 89 EATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDL 134 (203)
Q Consensus 89 ~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DL 134 (203)
++.|+-=+-.+.++...+++.-=+++........+|..|+.++..|
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~l 47 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQL 47 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 46
>KOG1853|consensus
Probab=20.04 E-value=2.4e+02 Score=26.09 Aligned_cols=47 Identities=21% Similarity=0.240 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHh
Q psy4486 88 DEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDL 134 (203)
Q Consensus 88 s~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DL 134 (203)
+..++.++|..||..|..||--.-|||---.-.-|-+.|+-+++|..
T Consensus 99 dlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqA 145 (333)
T KOG1853|consen 99 DLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQA 145 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHH
Confidence 34678999999999999999888888877777778888888888874
Done!