Query psy4486
Match_columns 203
No_of_seqs 166 out of 305
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 18:21:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4486.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4486hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j1e_C Troponin I, TNI; THIN f 100.0 1.7E-65 6E-70 428.5 13.7 162 34-199 6-170 (180)
2 1ytz_I Troponin I; muscle, THI 100.0 4.8E-64 1.7E-68 420.2 10.3 160 35-199 5-169 (182)
3 1j1d_C Troponin I, TNI; THIN f 100.0 4E-50 1.4E-54 322.3 14.8 122 34-156 6-128 (133)
4 1ytz_T Troponin T; muscle, THI 100.0 1.3E-32 4.5E-37 213.6 9.5 93 48-143 5-97 (107)
5 1j1d_B Troponin T, TNT; THIN f 100.0 2E-32 6.8E-37 212.3 3.8 93 48-143 2-97 (106)
6 1a2x_B Troponin I; muscle cont 99.1 4.8E-12 1.6E-16 85.2 -0.4 42 36-77 6-47 (47)
7 3bas_A Myosin heavy chain, str 86.4 1.4 4.7E-05 32.2 5.5 53 77-130 2-57 (89)
8 1hjb_A Ccaat/enhancer binding 70.3 8.2 0.00028 28.3 5.2 49 93-141 35-83 (87)
9 1l8d_A DNA double-strand break 64.2 20 0.00068 26.0 6.4 59 75-135 47-105 (112)
10 3nmd_A CGMP dependent protein 62.0 34 0.0011 24.4 6.9 54 83-136 14-68 (72)
11 2fxo_A Myosin heavy chain, car 52.9 46 0.0016 25.3 6.9 50 88-137 77-126 (129)
12 4etp_A Kinesin-like protein KA 48.9 33 0.0011 31.0 6.3 56 90-145 13-73 (403)
13 1nkp_A C-MYC, MYC proto-oncoge 43.0 88 0.003 22.3 9.8 62 72-136 26-87 (88)
14 2q6q_A Spindle POLE BODY compo 42.5 9.4 0.00032 27.3 1.3 30 111-140 6-35 (74)
15 1ci6_A Transcription factor AT 42.3 60 0.0021 21.9 5.4 41 93-133 22-62 (63)
16 2l5g_B Putative uncharacterize 42.1 19 0.00065 23.3 2.6 26 112-137 6-31 (42)
17 3u06_A Protein claret segregat 40.3 53 0.0018 29.8 6.3 55 90-144 13-72 (412)
18 2oqq_A Transcription factor HY 33.4 44 0.0015 21.5 3.3 16 90-105 6-21 (42)
19 3o0z_A RHO-associated protein 33.3 94 0.0032 25.3 6.1 48 90-137 44-105 (168)
20 2fxo_A Myosin heavy chain, car 33.1 1.1E+02 0.0037 23.1 6.2 46 91-136 17-62 (129)
21 1t2k_D Cyclic-AMP-dependent tr 32.8 1E+02 0.0035 20.3 5.3 37 94-130 22-58 (61)
22 2eqb_B RAB guanine nucleotide 32.0 1.5E+02 0.0052 22.1 6.6 40 99-138 31-70 (97)
23 1jnm_A Proto-oncogene C-JUN; B 30.3 42 0.0014 22.4 3.0 34 94-127 22-55 (62)
24 3efg_A Protein SLYX homolog; x 29.8 1.1E+02 0.0039 21.5 5.4 50 90-139 10-59 (78)
25 1lq7_A Alpha3W; three helix bu 29.5 1.2E+02 0.004 20.8 5.1 58 66-125 6-65 (67)
26 1lwu_C Fibrinogen gamma chain; 28.5 1.1E+02 0.0038 27.1 6.3 53 91-143 9-61 (323)
27 1zxa_A CGMP-dependent protein 28.4 66 0.0023 22.5 3.8 42 98-139 15-56 (67)
28 3hnw_A Uncharacterized protein 27.7 1.5E+02 0.005 23.0 6.2 46 91-136 72-124 (138)
29 3s9g_A Protein hexim1; cyclin 27.0 1.5E+02 0.0051 22.4 5.8 50 84-133 27-76 (104)
30 3lay_A Zinc resistance-associa 24.9 2.7E+02 0.0093 22.4 10.6 76 38-119 67-142 (175)
31 3aji_B S6C, proteasome (prosom 23.2 98 0.0034 20.7 4.0 14 85-98 33-46 (83)
32 2krk_A 26S protease regulatory 23.2 72 0.0025 22.2 3.3 15 85-99 43-57 (86)
33 1nlw_A MAD protein, MAX dimeri 22.8 2E+02 0.0068 20.1 9.5 58 73-133 22-79 (80)
34 1v63_A Nucleolar transcription 22.2 65 0.0022 23.2 3.0 42 83-124 28-69 (101)
35 2akf_A Coronin-1A; coiled coil 21.5 82 0.0028 18.9 2.7 19 90-108 9-27 (32)
36 1nkp_B MAX protein, MYC proto- 21.4 2E+02 0.007 19.7 9.0 60 73-136 23-82 (83)
37 2wt7_A Proto-oncogene protein 21.3 1.9E+02 0.0064 19.2 5.4 37 93-129 22-58 (63)
No 1
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=100.00 E-value=1.7e-65 Score=428.47 Aligned_cols=162 Identities=29% Similarity=0.462 Sum_probs=108.4
Q ss_pred hcCCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcH
Q psy4486 34 AKKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDL 113 (203)
Q Consensus 34 akk~kms~~RK~~LksllL~kA~~~L~kEk~~k~eeKkk~LaER~~Pl~~idgLs~~~Lqe~ckELh~~I~~lEeErYDl 113 (203)
.++|||||+|+++|++|||++|+++|++|+++++++|++||+|||||| ||||||+++|+++|++||++|++||+|+|||
T Consensus 6 ~kk~~mt~~Rk~~Lk~lll~kA~e~L~~E~e~k~eEKkkiLaER~kPL-nid~Lse~~L~e~ckELh~~I~~LEeEKYDl 84 (180)
T 1j1e_C 6 KKKSKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRAQPL-ELAGLGFAELQDLARQLHARVDKVDEERYDI 84 (180)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 368999999999999999999999999999999999999999999888 9999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhhcCCCCcchhhhhcch-HHHHH-H-hhhhhccchhhhccccccchhhhhHHhhhccccc
Q psy4486 114 EIIFRVKEAEITELNAQVNDLRGKFIKPTLKKVSKYE-NKFAK-L-QKKAAEFNFRNQLKVVKKKEFTLEEEEKEKKPEW 190 (203)
Q Consensus 114 E~Kv~kq~~EI~eL~~kV~DLrGKfkkP~LkkV~~sa-~~~~~-l-~k~~~~~d~RanLK~VkKe~~~~~e~~~~~~~dW 190 (203)
+++|.+|+|||++|+++||||+|+|++|+|||||||| +|+.+ | ++|+++||||||||||+|++. ++++++||||
T Consensus 85 E~kvkkqdyEI~dL~~rV~DLrGKFkKP~LkkV~~s~d~m~~allg~k~~~~~d~RanLK~Vkke~~---e~~~~~~~dW 161 (180)
T 1j1e_C 85 EAKVTKNITEIADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDT---EKENREVGDW 161 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHSCC--------------------------------
T ss_pred HHHHHhcchhHHHHHHHHHHHHhcccccchhhhcccHHHHHHHHHHhhHhhhhhHHHhccccccccc---cccccccchH
Confidence 9999999999999999999999999999999999999 45554 4 378999999999999999874 3455689999
Q ss_pred ccccCCccc
Q psy4486 191 TKVGGDKGK 199 (203)
Q Consensus 191 rkn~e~k~~ 199 (203)
|+||+++.+
T Consensus 162 rkn~e~~~g 170 (180)
T 1j1e_C 162 RKNIDALSG 170 (180)
T ss_dssp ---------
T ss_pred HHHHHHhcC
Confidence 999999865
No 2
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=100.00 E-value=4.8e-64 Score=420.21 Aligned_cols=160 Identities=26% Similarity=0.430 Sum_probs=130.6
Q ss_pred cCCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcHH
Q psy4486 35 KKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLE 114 (203)
Q Consensus 35 kk~kms~~RK~~LksllL~kA~~~L~kEk~~k~eeKkk~LaER~~Pl~~idgLs~~~Lqe~ckELh~~I~~lEeErYDlE 114 (203)
++++|||+|+++|++|||++|+++|++|+++++++|++||+|||||| |||| |+++|+++|++||+||++||+++|||+
T Consensus 5 ~k~kmt~~Rk~~Lk~lll~kA~e~L~~E~e~k~eeKkkiLaER~kPL-nid~-se~~L~e~ckELh~~I~~LEeEKYDlE 82 (182)
T 1ytz_I 5 KKRRAATARRQHLKSAMLQLAVTEIEKEAAAKEVEKQNYLAEHSPPL-SLPG-SMQELQELSKKLHAKIDSVDEERYDTE 82 (182)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-CCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCC-CHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 56789999999999999999999999999999999999999999888 9999 999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhhcCCCCcchhhhhcch-HHHHHH-h-hhhhccchhhhccccccchhhhhHHhhh--cccc
Q psy4486 115 IIFRVKEAEITELNAQVNDLRGKFIKPTLKKVSKYE-NKFAKL-Q-KKAAEFNFRNQLKVVKKKEFTLEEEEKE--KKPE 189 (203)
Q Consensus 115 ~Kv~kq~~EI~eL~~kV~DLrGKfkkP~LkkV~~sa-~~~~~l-~-k~~~~~d~RanLK~VkKe~~~~~e~~~~--~~~d 189 (203)
++|.+++|||++|+++||||+|+|++|+|++||||| +|+.+| + +|+++||||||||||+|+++ +++++ +|||
T Consensus 83 ~kvkkq~yEI~dL~~rVnDLrGKfkKP~LkkV~~sad~m~kallg~k~k~~~d~RanLK~Vkke~~---e~~~~~~~~~d 159 (182)
T 1ytz_I 83 VKLQKTNKELEDLSQKLFDLRGKFKRPPLRRVRMSADAMLRALLGSKHKVNMDLRANLKQVKKEDT---EKEKDLRDVGD 159 (182)
T ss_dssp HHHHHHHHHHHHHTTTTGGGTCSCSSCSSCCCCCCHHHHHHHHHTTCCCCCCSSCCCCCCC-------------------
T ss_pred HHHHhhhHHHHHHHHHHHHHHhhhcccchhhccccHhHHHHHHhCCCchhhhhHHHhccccccchh---hhhhhhccccc
Confidence 999999999999999999999999999999999999 566664 3 78999999999999999874 33445 8999
Q ss_pred cccccCCccc
Q psy4486 190 WTKVGGDKGK 199 (203)
Q Consensus 190 Wrkn~e~k~~ 199 (203)
||+||+++.+
T Consensus 160 Wrkn~e~~~g 169 (182)
T 1ytz_I 160 WRKNIEEKSG 169 (182)
T ss_dssp ----------
T ss_pred HHHHHHhhcC
Confidence 9999999865
No 3
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=100.00 E-value=4e-50 Score=322.27 Aligned_cols=122 Identities=30% Similarity=0.480 Sum_probs=108.7
Q ss_pred hcCCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcH
Q psy4486 34 AKKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDL 113 (203)
Q Consensus 34 akk~kms~~RK~~LksllL~kA~~~L~kEk~~k~eeKkk~LaER~~Pl~~idgLs~~~Lqe~ckELh~~I~~lEeErYDl 113 (203)
+++|||||+|+++|++|||++|+++|++|+++++++|++||+|||||| ||||||+++|+++|++||+||++||+|||||
T Consensus 6 ~~k~~mt~~Rk~~Lk~lll~kA~e~l~kE~e~k~eeKkkiLaER~~pL-~id~ls~~~L~e~~keLh~~I~~LEeEKYDl 84 (133)
T 1j1d_C 6 KKKSKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRAQPL-ELAGLGFAELQDLARQLHARVDKVDEERYDI 84 (133)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC-CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 368999999999999999999999999999999999999999999888 9999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhhcCCCCcchhhhhcch-HHHHHH
Q psy4486 114 EIIFRVKEAEITELNAQVNDLRGKFIKPTLKKVSKYE-NKFAKL 156 (203)
Q Consensus 114 E~Kv~kq~~EI~eL~~kV~DLrGKfkkP~LkkV~~sa-~~~~~l 156 (203)
+++|++|+|||++|+++||||+|||+||+|||||||| +|+.+|
T Consensus 85 E~kvkkq~yEI~dL~~rV~Dl~gKfkKP~LkkVr~sad~ml~al 128 (133)
T 1j1d_C 85 EAKVTKNITEIADLTQKIFDLRGKFKRPTLRRVRISADAMMQAL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--------CCCCCCHHHHHHHH
T ss_pred HHHHHHcchHHHHHHHHHHHHHcccCCCccCccccCHHHHHHHH
Confidence 9999999999999999999999999999999999999 444444
No 4
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=99.98 E-value=1.3e-32 Score=213.62 Aligned_cols=93 Identities=23% Similarity=0.355 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHH
Q psy4486 48 RLLLRKKAAEELKKEQERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITEL 127 (203)
Q Consensus 48 ksllL~kA~~~L~kEk~~k~eeKkk~LaER~~Pl~~idgLs~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL 127 (203)
++.||+++....+ ..++.+++|++||+|||||| ||||||+++|+++|++||++|++||+||||||++|.+++|||++|
T Consensus 5 ~g~~~~k~e~~~~-k~q~e~EeKkkiLaER~~pL-~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL 82 (107)
T 1ytz_T 5 YSSYLAKADQKRG-KKQTARETKKKVLAERRKPL-NIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTL 82 (107)
T ss_dssp CTTHHHHHHHHHH-HHHHHHHHHHHHHHHTCCCC-CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhccc-HHHHHHHHHHHHHHHhCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHH
Confidence 4566788766664 46777789999999999888 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCcch
Q psy4486 128 NAQVNDLRGKFIKPTL 143 (203)
Q Consensus 128 ~~kV~DLrGKfkkP~L 143 (203)
+++|+|| |||++|+.
T Consensus 83 ~~rV~dl-gKfkKp~~ 97 (107)
T 1ytz_T 83 RNRIDQA-QKHSKKAG 97 (107)
T ss_dssp HHHHHHT-CCCC----
T ss_pred HHHHHHh-cCccCCCC
Confidence 9999999 99999986
No 5
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=99.97 E-value=2e-32 Score=212.32 Aligned_cols=93 Identities=23% Similarity=0.357 Sum_probs=67.9
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHH
Q psy4486 48 RLLLRKK---AAEELKKEQERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEI 124 (203)
Q Consensus 48 ksllL~k---A~~~L~kEk~~k~eeKkk~LaER~~Pl~~idgLs~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI 124 (203)
++.||++ +.... ...++.+++|++||+|||||| ||||||+++|+++|++||++|++||+|+||||++|.+++|||
T Consensus 2 ~~g~l~~~~~~e~~~-~k~q~ereeKkkiLaER~kpL-~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI 79 (106)
T 1j1d_B 2 FGGYIQKQAQTERKS-GKRQTEREKKKKILAERRKVL-AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEI 79 (106)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHhcc-cHHHHHHHHHHHHHHHhCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHH
Confidence 4566777 33333 245556699999999999888 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcch
Q psy4486 125 TELNAQVNDLRGKFIKPTL 143 (203)
Q Consensus 125 ~eL~~kV~DLrGKfkkP~L 143 (203)
++|+++|+|| |||+||+=
T Consensus 80 ~eL~~rV~dl-gKf~Kp~~ 97 (106)
T 1j1d_B 80 NVLRNRINDN-QKVSKTRG 97 (106)
T ss_dssp HHHHHHHHTC---------
T ss_pred HHHHHHHHHh-cCccCCCC
Confidence 9999999999 99999973
No 6
>1a2x_B Troponin I; muscle contraction regulation, complex (skeletal muscle/muscle protein); 2.30A {Oryctolagus cuniculus} SCOP: j.22.1.1
Probab=99.12 E-value=4.8e-12 Score=85.19 Aligned_cols=42 Identities=26% Similarity=0.459 Sum_probs=26.5
Q ss_pred CCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q psy4486 36 KGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVIEQR 77 (203)
Q Consensus 36 k~kms~~RK~~LksllL~kA~~~L~kEk~~k~eeKkk~LaER 77 (203)
+++||++|+++|+|+||++|.++|++|..+++++|++||+||
T Consensus 6 k~kms~sRK~~LKslmL~~A~~~Le~E~~~k~~eK~~~L~Er 47 (47)
T 1a2x_B 6 RNRAITARRQHLKSVMLQIAATELEKEEGRREAEKQNYLAEH 47 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456999999999999999999999999999999999999986
No 7
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=86.37 E-value=1.4 Score=32.16 Aligned_cols=53 Identities=15% Similarity=0.012 Sum_probs=36.7
Q ss_pred hcCCCCCCCCCCHHHH---HHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHH
Q psy4486 77 RCGTHKDWTNADEATV---NKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQ 130 (203)
Q Consensus 77 R~~Pl~~idgLs~~~L---qe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~k 130 (203)
+++||+++.. +..++ .+-+..|-..+...+..+.+|+.+......+.++|...
T Consensus 2 kVKPLL~~~~-~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 2 SHMPLLSIAR-QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp --------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789966543 45554 45577778889999999999999999999999999888
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=70.30 E-value=8.2 Score=28.30 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhcCCCCc
Q psy4486 93 NKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKP 141 (203)
Q Consensus 93 qe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrGKfkkP 141 (203)
+....+++..+..|+.+.-.|...|.....|+..|+.-+.++.|.|.+|
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~~~ 83 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLLAS 83 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHhcc
Confidence 3445677888889999999999999999999999999999999977766
No 9
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=64.24 E-value=20 Score=26.03 Aligned_cols=59 Identities=10% Similarity=0.079 Sum_probs=47.1
Q ss_pred hhhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhh
Q psy4486 75 EQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLR 135 (203)
Q Consensus 75 aER~~Pl~~idgLs~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLr 135 (203)
...| |+ .-+.++..........+...|..+..+-.++...+...+.+|..|+..+.|+.
T Consensus 47 g~~C-Pv-Cgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~~~~ 105 (112)
T 1l8d_A 47 KGKC-PV-CGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIKRLT 105 (112)
T ss_dssp SEEC-TT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCC-CC-CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579 56 66777777777788888888999988888999998888888999988888543
No 10
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=62.01 E-value=34 Score=24.39 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=40.0
Q ss_pred CCCCCC-HHHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhc
Q psy4486 83 DWTNAD-EATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 136 (203)
Q Consensus 83 ~idgLs-~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrG 136 (203)
+|.|++ ..+|+...+.--+.|...|+-==+++..+...+.+|..|+..+..++.
T Consensus 14 ~~~~mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 14 SIEGRGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456655 477888877777777777877778888899999999999999888776
No 11
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=52.89 E-value=46 Score=25.27 Aligned_cols=50 Identities=24% Similarity=0.243 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhcC
Q psy4486 88 DEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGK 137 (203)
Q Consensus 88 s~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrGK 137 (203)
...+|...+.+|..++...++..-+|...-++-..+|.+|...|.|+-+.
T Consensus 77 ~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~ 126 (129)
T 2fxo_A 77 NKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELT 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788999999999999999999999999999999999999999998764
No 12
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=48.86 E-value=33 Score=30.95 Aligned_cols=56 Identities=25% Similarity=0.386 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhcCC-----CCcchhh
Q psy4486 90 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKF-----IKPTLKK 145 (203)
Q Consensus 90 ~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrGKf-----kkP~Lkk 145 (203)
..|++.+.+|-..|..++.+.-++..++......-..|.+.|+||+|.+ +||.+..
T Consensus 13 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~~~~ 73 (403)
T 4etp_A 13 AALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLRIRPALKN 73 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCc
Confidence 5688889999999999999999999999999999999999999999986 5888765
No 13
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=43.03 E-value=88 Score=22.30 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=42.6
Q ss_pred HHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhc
Q psy4486 72 RVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 136 (203)
Q Consensus 72 k~LaER~~Pl~~idgLs~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrG 136 (203)
..|..-+|.+++-..+|-..+-..|- +.|..|....-.+...+.....+...|..+|..|+|
T Consensus 26 ~~Lr~~vP~~~~~~K~sK~~iL~~A~---~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 26 FALRDQIPELENNEKAPKVVILKKAT---AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHTTCGGGTTCTTCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555665443334566655544444 567777777777777777788889999999999987
No 14
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=42.53 E-value=9.4 Score=27.31 Aligned_cols=30 Identities=37% Similarity=0.458 Sum_probs=24.8
Q ss_pred hcHHHHHhhhhhHHHHHHHHHHHhhcCCCC
Q psy4486 111 YDLEIIFRVKEAEITELNAQVNDLRGKFIK 140 (203)
Q Consensus 111 YDlE~Kv~kq~~EI~eL~~kV~DLrGKfkk 140 (203)
-||..+|..+..||..|+.=|-.||||..|
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiK 35 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEK 35 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777888899999999999999996543
No 15
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=42.33 E-value=60 Score=21.85 Aligned_cols=41 Identities=17% Similarity=0.095 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHH
Q psy4486 93 NKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVND 133 (203)
Q Consensus 93 qe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~D 133 (203)
.+-+.+|...+..|+.+.-+|...|.....||..|+.=|.+
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44577888888888888888888888888888888776654
No 16
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=42.14 E-value=19 Score=23.29 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=16.0
Q ss_pred cHHHHHhhhhhHHHHHHHHHHHhhcC
Q psy4486 112 DLEIIFRVKEAEITELNAQVNDLRGK 137 (203)
Q Consensus 112 DlE~Kv~kq~~EI~eL~~kV~DLrGK 137 (203)
||-.++.+.+.||.--..+|++|+++
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkK 31 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKK 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566677777777777663
No 17
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=40.29 E-value=53 Score=29.81 Aligned_cols=55 Identities=24% Similarity=0.241 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhcCC-----CCcchh
Q psy4486 90 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKF-----IKPTLK 144 (203)
Q Consensus 90 ~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrGKf-----kkP~Lk 144 (203)
.+|++.+.+|-..|..+..+.-.+...+...+.+-..|.+.|+||+|.+ +||.+.
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~vRvRP~~~ 72 (412)
T 3u06_A 13 VHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVFCRIRPPLE 72 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcCCCCc
Confidence 6788889999999999999999999999999999999999999999975 477654
No 18
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=33.40 E-value=44 Score=21.53 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHh
Q psy4486 90 ATVNKILKELWDRAFK 105 (203)
Q Consensus 90 ~~Lqe~ckELh~~I~~ 105 (203)
.+|...+++|+.+...
T Consensus 6 ~eLE~r~k~le~~nae 21 (42)
T 2oqq_A 6 SELENRVKDLENKNSE 21 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555443
No 19
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=33.27 E-value=94 Score=25.31 Aligned_cols=48 Identities=21% Similarity=0.305 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcHHHHHh--------------hhhhHHHHHHHHHHHhhcC
Q psy4486 90 ATVNKILKELWDRAFKLESEKYDLEIIFR--------------VKEAEITELNAQVNDLRGK 137 (203)
Q Consensus 90 ~~Lqe~ckELh~~I~~lEeErYDlE~Kv~--------------kq~~EI~eL~~kV~DLrGK 137 (203)
+.+...|.+|.+.+..|+..+-.|+.-+. ...--|.+|.-||.-|.+-
T Consensus 44 ~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~E 105 (168)
T 3o0z_A 44 SQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEE 105 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777666666552 3334466777777777663
No 20
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=33.09 E-value=1.1e+02 Score=23.12 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhc
Q psy4486 91 TVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 136 (203)
Q Consensus 91 ~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrG 136 (203)
.+.+-++.|-..+...+..+.+|+.+......++++|...++.-++
T Consensus 17 ~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~ 62 (129)
T 2fxo_A 17 SMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQD 62 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566688889999999999999999999999999999988876554
No 21
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=32.76 E-value=1e+02 Score=20.26 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHH
Q psy4486 94 KILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQ 130 (203)
Q Consensus 94 e~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~k 130 (203)
+...+|...+..|+.+.-+|...|..-..++..|...
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666655555555555544
No 22
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.98 E-value=1.5e+02 Score=22.05 Aligned_cols=40 Identities=18% Similarity=0.102 Sum_probs=27.5
Q ss_pred HHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhcCC
Q psy4486 99 LWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKF 138 (203)
Q Consensus 99 Lh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrGKf 138 (203)
|...+..--.-|...|....+-..|+.+|+.-+|+=--++
T Consensus 31 L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~M 70 (97)
T 2eqb_B 31 LREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNM 70 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334467777888889999999999998855433
No 23
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.26 E-value=42 Score=22.37 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHH
Q psy4486 94 KILKELWDRAFKLESEKYDLEIIFRVKEAEITEL 127 (203)
Q Consensus 94 e~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL 127 (203)
+...+|...+..|+.+.-.|...|.....++..|
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666555555444444444333
No 24
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=29.77 E-value=1.1e+02 Score=21.50 Aligned_cols=50 Identities=14% Similarity=-0.025 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhcCCC
Q psy4486 90 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFI 139 (203)
Q Consensus 90 ~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrGKfk 139 (203)
+.|.+-.-+|=-+|.-.|.-==+|..-|..|..+|..|..++.-|.+++.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555445555555544444445666777777777777777777776654
No 25
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=29.51 E-value=1.2e+02 Score=20.76 Aligned_cols=58 Identities=19% Similarity=0.165 Sum_probs=40.0
Q ss_pred HHHHHhHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhh--hhhcHHHHHhhhhhHHH
Q psy4486 66 KAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLES--EKYDLEIIFRVKEAEIT 125 (203)
Q Consensus 66 k~eeKkk~LaER~~Pl~~idgLs~~~Lqe~ckELh~~I~~lEe--ErYDlE~Kv~kq~~EI~ 125 (203)
.-+++.+.|.+.++.| .-.| ..++|...-.+|..+|..|-. +--.++..|++...+|.
T Consensus 6 aleekvkaleekvkal-gggg-rieelkkkweelkkkieelggggevkkveeevkkleeeik 65 (67)
T 1lq7_A 6 ALEEKVKALEEKVKAL-GGGG-RIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIK 65 (67)
T ss_dssp HHHHHHHHHHHHHHHS-CCSS-SHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-cCCc-cHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 4467788899999877 4344 789999999999999887643 33344555555555554
No 26
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.50 E-value=1.1e+02 Score=27.07 Aligned_cols=53 Identities=19% Similarity=0.289 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhcCCCCcch
Q psy4486 91 TVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTL 143 (203)
Q Consensus 91 ~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrGKfkkP~L 143 (203)
.|.+-...|-..|...++.-..|+..+..+...|..|..+|.+|...+..|..
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~~~~ 61 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPCQ 61 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCE
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34444444666777777788888888889999999999999999998888764
No 27
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=28.42 E-value=66 Score=22.49 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=28.2
Q ss_pred HHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhcCCC
Q psy4486 98 ELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFI 139 (203)
Q Consensus 98 ELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrGKfk 139 (203)
+|+..|..=++-==+|+..+...+.+|..|+..+.-++-=|.
T Consensus 15 ~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 15 DFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444444555567788899999999999999999888554
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=27.70 E-value=1.5e+02 Score=22.99 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhh-------HHHHHHHHHHHhhc
Q psy4486 91 TVNKILKELWDRAFKLESEKYDLEIIFRVKEA-------EITELNAQVNDLRG 136 (203)
Q Consensus 91 ~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~-------EI~eL~~kV~DLrG 136 (203)
+++.-+..|-..|..++.+-||+-..+....- ++.+|..+++.|++
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777665555444 44455555555544
No 29
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=27.04 E-value=1.5e+02 Score=22.43 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHH
Q psy4486 84 WTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVND 133 (203)
Q Consensus 84 idgLs~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~D 133 (203)
|.+||-++|-.-|=+|-..+..++++-=-+-.-......-|.+|-..|..
T Consensus 27 L~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~ever 76 (104)
T 3s9g_A 27 LQNMSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDR 76 (104)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Confidence 46789999999999999999998777543333222223334444444333
No 30
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=24.88 E-value=2.7e+02 Score=22.36 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=46.7
Q ss_pred CCChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcHHHHH
Q psy4486 38 FMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIF 117 (203)
Q Consensus 38 kms~~RK~~LksllL~kA~~~L~kEk~~k~eeKkk~LaER~~Pl~~idgLs~~~Lqe~ckELh~~I~~lEeErYDlE~Kv 117 (203)
.+|++-+.+++.++ +........-.++....+..+-+.-. =+..|.+.++++.+++.+.=.++..+|.++...+
T Consensus 67 nLT~EQq~ql~~I~-~e~r~~~~~Lr~ql~akr~EL~aL~~-----a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em 140 (175)
T 3lay_A 67 PLTTEQQATAQKIY-DDYYTQTSALRQQLISKRYEYNALLT-----ASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAM 140 (175)
T ss_dssp -CCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHT-----SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888777766553 33333333223333333433333222 2445779999999999988888888888877776
Q ss_pred hh
Q psy4486 118 RV 119 (203)
Q Consensus 118 ~k 119 (203)
.+
T Consensus 141 ~K 142 (175)
T 3lay_A 141 AQ 142 (175)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 31
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=23.24 E-value=98 Score=20.75 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHH
Q psy4486 85 TNADEATVNKILKE 98 (203)
Q Consensus 85 dgLs~~~Lqe~ckE 98 (203)
+|+|-.+|..+|++
T Consensus 33 ~G~SGADi~~l~~e 46 (83)
T 3aji_B 33 DKISGADINSICQE 46 (83)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 48999999999997
No 32
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=23.15 E-value=72 Score=22.22 Aligned_cols=15 Identities=27% Similarity=0.271 Sum_probs=12.8
Q ss_pred CCCCHHHHHHHHHHH
Q psy4486 85 TNADEATVNKILKEL 99 (203)
Q Consensus 85 dgLs~~~Lqe~ckEL 99 (203)
+|+|-.+|..+|++=
T Consensus 43 ~G~SGADL~~l~~eA 57 (86)
T 2krk_A 43 PGASGAEVKGVCTEA 57 (86)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 388999999999973
No 33
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=22.79 E-value=2e+02 Score=20.08 Aligned_cols=58 Identities=14% Similarity=0.013 Sum_probs=35.9
Q ss_pred HhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHH
Q psy4486 73 VIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVND 133 (203)
Q Consensus 73 ~LaER~~Pl~~idgLs~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~D 133 (203)
.|..-+|.+++-+-+|--.+-..|- +.|..|.++--.+.........++..|+.++..
T Consensus 22 ~Lr~~vP~~~~~~k~sk~~iL~kA~---~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 22 KLKGLVPLGPDSSRHTTLSLLTKAK---LHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHSSCCCSSSCCCTTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCCCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3556665454445555444444443 667777777666776667777777777777654
No 34
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=22.23 E-value=65 Score=23.18 Aligned_cols=42 Identities=10% Similarity=0.111 Sum_probs=32.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHH
Q psy4486 83 DWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEI 124 (203)
Q Consensus 83 ~idgLs~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI 124 (203)
++.+++..++-.+|-+.|..+..-|=..|.-.+...+..|+.
T Consensus 28 ~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~ 69 (101)
T 1v63_A 28 ELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKV 69 (101)
T ss_dssp TTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 567788899999999999988877777887777666665553
No 35
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=21.53 E-value=82 Score=18.95 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy4486 90 ATVNKILKELWDRAFKLES 108 (203)
Q Consensus 90 ~~Lqe~ckELh~~I~~lEe 108 (203)
-.|+.++++|..++|.||+
T Consensus 9 r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 9 RNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999885
No 36
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.41 E-value=2e+02 Score=19.69 Aligned_cols=60 Identities=12% Similarity=0.043 Sum_probs=38.1
Q ss_pred HhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhc
Q psy4486 73 VIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 136 (203)
Q Consensus 73 ~LaER~~Pl~~idgLs~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrG 136 (203)
.|..-+|++ .-+.+|-..+-..+- +.|..|..+.-.++..+.....++..|..++..|.|
T Consensus 23 ~Lr~lvP~~-~~~k~sK~~iL~~Ai---~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~~ 82 (83)
T 1nkp_B 23 SLRDSVPSL-QGEKASRAQILDKAT---EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp HHHTTSGGG-TTSCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHCCCC-CCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344455444 235567666555544 345555555556667777777888888888888776
No 37
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=21.29 E-value=1.9e+02 Score=19.19 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHH
Q psy4486 93 NKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNA 129 (203)
Q Consensus 93 qe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~ 129 (203)
++.+.+|.+.+..|+.+.-.|...|..-..++..|..
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777776666666555544444444443
Done!