Query psy4486
Match_columns 203
No_of_seqs 166 out of 305
Neff 4.6
Searched_HMMs 13730
Date Fri Aug 16 18:21:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4486.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4486hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nkpa_ a.38.1.1 (A:) Myc prot 77.8 7.5 0.00055 25.8 9.8 75 59-136 13-87 (88)
2 d1nkpb_ a.38.1.1 (B:) Max prot 39.2 44 0.0032 21.5 9.4 61 72-136 22-82 (83)
3 d1ge9a_ d.67.3.1 (A:) Ribosome 37.0 77 0.0056 23.6 8.4 63 35-105 103-172 (184)
4 d1st6a3 a.24.9.1 (A:253-371) V 30.1 87 0.0064 22.2 7.2 15 121-135 73-87 (119)
5 d1v63a_ a.21.1.1 (A:) Nucleola 27.0 22 0.0016 23.5 3.0 42 84-125 29-70 (101)
6 d1ek8a_ d.67.3.1 (A:) Ribosome 23.6 86 0.0063 23.3 6.3 54 35-93 101-154 (185)
7 d1lwma_ a.21.1.1 (A:) NHP6a {B 22.2 44 0.0032 21.8 3.8 41 85-125 44-84 (93)
8 d1eh1a_ d.67.3.1 (A:) Ribosome 21.3 61 0.0045 24.2 4.9 53 35-92 102-154 (185)
9 d1x4ta1 a.2.15.1 (A:7-86) Pre- 19.7 1.2E+02 0.0088 20.2 5.8 13 130-146 68-80 (80)
10 d1is1a_ d.67.3.1 (A:) Ribosome 19.6 1.6E+02 0.011 21.8 7.0 56 35-95 101-156 (185)
No 1
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=77.80 E-value=7.5 Score=25.84 Aligned_cols=75 Identities=11% Similarity=0.127 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhHHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhc
Q psy4486 59 LKKEQERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 136 (203)
Q Consensus 59 L~kEk~~k~eeKkk~LaER~~Pl~~idgLs~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrG 136 (203)
.++......-+.=..|..-+||+++-..+|-..+-..+-+ .|..|..+--.+...+.....+...|..+++.|+|
T Consensus 13 ~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~---yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~g 87 (88)
T d1nkpa_ 13 LERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATA---YILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4443444444444567777776644455777666555553 34444444455555666666778889999999987
No 2
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.23 E-value=44 Score=21.47 Aligned_cols=61 Identities=11% Similarity=0.046 Sum_probs=38.7
Q ss_pred HHhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHHHHHHHHHHhhc
Q psy4486 72 RVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 136 (203)
Q Consensus 72 k~LaER~~Pl~~idgLs~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~eL~~kV~DLrG 136 (203)
.-|..-+|++ .-+.+|-..+-..+- ..|..|..+.-++...+.....+...|..+|+.|+|
T Consensus 22 ~~L~~llP~~-~~~k~sK~~iL~~A~---~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~g 82 (83)
T d1nkpb_ 22 HSLRDSVPSL-QGEKASRAQILDKAT---EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp HHHHTTSGGG-TTSCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHhCCC-CCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455556544 335567666544444 334555555556666666777778889999988887
No 3
>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]}
Probab=36.97 E-value=77 Score=23.62 Aligned_cols=63 Identities=19% Similarity=0.200 Sum_probs=41.1
Q ss_pred cCCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCCHHH-------HHHHHHHHHHHHHh
Q psy4486 35 KKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVIEQRCGTHKDWTNADEAT-------VNKILKELWDRAFK 105 (203)
Q Consensus 35 kk~kms~~RK~~LksllL~kA~~~L~kEk~~k~eeKkk~LaER~~Pl~~idgLs~~~-------Lqe~ckELh~~I~~ 105 (203)
.-+.||.+||..| .+.|....+.-+..-+-.|+.++.. ++ ...++|+|+ ||.+...+...|+.
T Consensus 103 ~iP~lT~E~R~~l----vK~ak~~~E~aKv~iRniR~~~~~~-lK---k~k~iseD~~k~~~~~iqkltd~~~~~id~ 172 (184)
T d1ge9a_ 103 TLPPLTEERRREL----VRLLHKITEEARVRVRNVRREAKEM-IE---ELEGISEDEKKRALERLQKLTDKYIDEINK 172 (184)
T ss_dssp ECCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HH---HSTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHH-HH---HhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999998875 5556666777777778888888754 43 335788766 44444444444443
No 4
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=30.13 E-value=87 Score=22.22 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHhh
Q psy4486 121 EAEITELNAQVNDLR 135 (203)
Q Consensus 121 ~~EI~eL~~kV~DLr 135 (203)
-.||..|+.++.||+
T Consensus 73 c~ei~~lt~qLadLr 87 (119)
T d1st6a3 73 CKTLGQMTDQLADLR 87 (119)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666666666664
No 5
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.00 E-value=22 Score=23.53 Aligned_cols=42 Identities=10% Similarity=0.087 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHH
Q psy4486 84 WTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEIT 125 (203)
Q Consensus 84 idgLs~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~ 125 (203)
..|++..++..+|-+.|..|..-+=..|.-.+...+..|...
T Consensus 29 ~~~~~~~ei~k~~g~~Wk~ls~~eK~~Y~~~a~~~~~~y~~e 70 (101)
T d1v63a_ 29 LNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVH 70 (101)
T ss_dssp TTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999888888778877777766666544
No 6
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]}
Probab=23.55 E-value=86 Score=23.33 Aligned_cols=54 Identities=19% Similarity=0.110 Sum_probs=34.4
Q ss_pred cCCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCCHHHHH
Q psy4486 35 KKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVIEQRCGTHKDWTNADEATVN 93 (203)
Q Consensus 35 kk~kms~~RK~~LksllL~kA~~~L~kEk~~k~eeKkk~LaER~~Pl~~idgLs~~~Lq 93 (203)
.-+.||.+|+..| .+.|....+.-+..-+.-|+.++.. ++.+..-.++|+|+..
T Consensus 101 ~iP~lT~E~R~el----vK~~k~~~E~~kv~iR~iRr~~~~~-ik~~~k~~~iseD~~k 154 (185)
T d1ek8a_ 101 PLPPLTEERRKDL----TKIVRGEAEQARVAVRNVRRDANDK-VKALLKDKEISEDDDR 154 (185)
T ss_dssp ECCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSSCCHHHHH
T ss_pred ccCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccCCCChhHHH
Confidence 4578999998875 4556556666666677777777654 3333223578887543
No 7
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.19 E-value=44 Score=21.85 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhhhcHHHHHhhhhhHHH
Q psy4486 85 TNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEIT 125 (203)
Q Consensus 85 dgLs~~~Lqe~ckELh~~I~~lEeErYDlE~Kv~kq~~EI~ 125 (203)
+|++..++...|.+.|..+..-+=..|.-.+...+..|+..
T Consensus 44 p~~~~~ei~k~l~~~W~~ls~~eK~~y~~~a~~~k~~y~~e 84 (93)
T d1lwma_ 44 PDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESE 84 (93)
T ss_dssp TTSCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34677899999999999999888889988888888777754
No 8
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]}
Probab=21.32 E-value=61 Score=24.23 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=32.8
Q ss_pred cCCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCCHHHH
Q psy4486 35 KKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVIEQRCGTHKDWTNADEATV 92 (203)
Q Consensus 35 kk~kms~~RK~~LksllL~kA~~~L~kEk~~k~eeKkk~LaER~~Pl~~idgLs~~~L 92 (203)
.-+.||.+||..| .+.|....+.-+..-+..|+.++..-- .+..=.++|+|+.
T Consensus 102 ~iP~lT~E~R~el----vK~~k~~~E~akv~iR~iR~~~~~~ik-k~~k~~~iseD~~ 154 (185)
T d1eh1a_ 102 NIPPLTEERRKDL----VRAVRQYAEEGRVAIRNIRREALDKLK-KLAKELHLSEDET 154 (185)
T ss_dssp ECCCCCTTHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTCCHHHH
T ss_pred cCCCCcHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccCCCCHHHH
Confidence 3578999998875 555666666666677777777766432 2212235676543
No 9
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.66 E-value=1.2e+02 Score=20.15 Aligned_cols=13 Identities=38% Similarity=0.790 Sum_probs=7.2
Q ss_pred HHHHhhcCCCCcchhhh
Q psy4486 130 QVNDLRGKFIKPTLKKV 146 (203)
Q Consensus 130 kV~DLrGKfkkP~LkkV 146 (203)
+|.+|.| |...||
T Consensus 68 rI~eLGG----pdY~r~ 80 (80)
T d1x4ta1 68 RIKELGG----PDYGKV 80 (80)
T ss_dssp HHHHHTS----CCSTTT
T ss_pred HHHHhCC----CCcccC
Confidence 4556667 655543
No 10
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]}
Probab=19.58 E-value=1.6e+02 Score=21.78 Aligned_cols=56 Identities=20% Similarity=0.061 Sum_probs=33.9
Q ss_pred cCCCCChHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcCCCCCCCCCCHHHHHHH
Q psy4486 35 KKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVIEQRCGTHKDWTNADEATVNKI 95 (203)
Q Consensus 35 kk~kms~~RK~~LksllL~kA~~~L~kEk~~k~eeKkk~LaER~~Pl~~idgLs~~~Lqe~ 95 (203)
.-+.||.+||..| .+.|....+.-+..-+.-|+..+.. ++-+..-.++|+|++...
T Consensus 101 ~iP~lT~E~R~el----vK~~k~~~E~akv~iRniRr~~~~~-ikk~~k~~~iseD~~k~~ 156 (185)
T d1is1a_ 101 PLPPLTEERRKDL----VKIVRGEAEGGRVAVRNIRRDANND-LKALLKDKEISEDEDRKA 156 (185)
T ss_dssp ECCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTSSCHHHHHHH
T ss_pred cCCCCcHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhccCCCCHhHHHHH
Confidence 4578999998875 5556666666666666666666553 222222356787664433
Done!