RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4486
(203 letters)
>gnl|CDD|201540 pfam00992, Troponin, Troponin. Troponin (Tn) contains three
subunits, Ca2+ binding (TnC), inhibitory (TnI), and
tropomyosin binding (TnT). this Pfam contains members of
the TnT subunit. Troponin is a complex of three
proteins, Ca2+ binding (TnC), inhibitory (TnI), and
tropomyosin binding (TnT). The troponin complex
regulates Ca++ induced muscle contraction. This family
includes troponin T and troponin I. Troponin I binds to
actin and troponin T binds to tropomyosin.
Length = 131
Score = 91.5 bits (228), Expect = 5e-24
Identities = 52/133 (39%), Positives = 74/133 (55%), Gaps = 5/133 (3%)
Query: 44 KKKLRLLLRKKAAEELKKEQERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRA 103
K+ L+ LL KAAEEL+ EQ +K E+ + + +RC + A + ++ K+L R
Sbjct: 1 KRHLKSLLLLKAAEELEFEQRKKEEEKEKYLAERCPPLRLS--LSRAELQELCKKLHARI 58
Query: 104 FKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKVSKYENKFAKL---QKKA 160
+L+ E+YD+E K+ EI +L +VNDLRGKF KPTLKKV K + K K
Sbjct: 59 DRLDEERYDIEEKVAKKDKEIEDLKKKVNDLRGKFKKPTLKKVRKSADAMLKALLGSKHK 118
Query: 161 AEFNFRNQLKVVK 173
+ R LK VK
Sbjct: 119 VSMDLRANLKQVK 131
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 32.9 bits (75), Expect = 0.10
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 1 MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAA 56
+A + A++ +QAE R+R E + A +A +A+ +R++KL+ LL+K +
Sbjct: 261 LAKEEAERERQAEEQRRREEEKA----AMEADRAQAKAEVEKRREKLQNLLKKASR 312
Score = 27.5 bits (61), Expect = 6.4
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 38 FMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVIEQRCGTHKDWTNA 87
F+ E++++L L A EE E+ER+A E+RR E++ D A
Sbjct: 249 FLLEEKRRELEKL----AKEE--AERERQAEEQRRREEEKAAMEADRAQA 292
Score = 26.8 bits (59), Expect = 9.4
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 14 IDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKL--RLLLRKK 54
I RK E R+ EEA +AK K M E K+K LL +K
Sbjct: 435 IYRKLQEERRLREEAIRAKAEKTARMKAEMKEKTLKMFLLSQK 477
>gnl|CDD|233764 TIGR02177, PorB_KorB, 2-oxoacid:acceptor oxidoreductase, beta
subunit, pyruvate/2-ketoisovalerate family. A number of
anaerobic and microaerophilic species lack pyruvate
dehydrogenase and have instead a four subunit,
oxygen-sensitive pyruvate oxidoreductase, with either
ferredoxins or flavodoxins used as the acceptor. Several
related four-subunit enzymes may exist in the same
species. This model describes a subfamily of beta
subunits, representing mostly pyruvate and
2-ketoisovalerate specific enzymes.
Length = 287
Score = 31.7 bits (72), Expect = 0.19
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 32/107 (29%)
Query: 91 TVNKILKELW--DRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKVSK 148
T NKI W +R +KL+ E YD P +++ +
Sbjct: 189 TYNKINTYEWYRERVYKLDEEGYD----------------------------PIVREPEE 220
Query: 149 YENKFAKLQKKAAEFNFRNQLKV--VKKKEFTLEEEEKEKKPEWTKV 193
+E K A KKA E+ R + + + + T EE ++ P +
Sbjct: 221 FEEKAAAAIKKAMEWGDRIPIGIFYKNENKETFEERLEKILPRYMSA 267
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 32.0 bits (72), Expect = 0.21
Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 22/215 (10%)
Query: 2 ADDAAKKA----KQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAE 57
AD+A KKA K+A+ +K AE +K+ +EA KA++AKK + + K A+
Sbjct: 1485 ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA-------DEAKKAEEAKKAD 1537
Query: 58 ELKKEQE-------RKAAERRRVIEQRCGTHKDWTNADEATVNK---ILKELWDRAFKLE 107
E KK +E +KA E ++ E++ D+ + K+ + +
Sbjct: 1538 EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEV 1597
Query: 108 SEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKVSKYENKFAKLQKKAAEFNFRN 167
+ Y+ E + +EA+ E A++ K + KKV + + K A+ +KKA E
Sbjct: 1598 MKLYEEEKKMKAEEAKKAE-EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAE 1656
Query: 168 QLKVVKKKEFTLEEEEKEKKPEWTKVGGDKGKEEE 202
+ +K E + EE +KK E K + K+
Sbjct: 1657 EENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAA 1691
Score = 29.7 bits (66), Expect = 1.2
Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 17/201 (8%)
Query: 2 ADDAAKKA----------KQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLL 51
AD+A KKA K+AE +K E +K+ EEA KA +AKK E KK
Sbjct: 1446 ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK---KAEEAKKKADEA 1502
Query: 52 RKKAAEELKKEQERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKY 111
+K A + K ++ +KA E ++ E + ADEA + K+ K E
Sbjct: 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEA--KKADEAKKAEEKKKA--DELKKAEELK 1558
Query: 112 DLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKV 171
E + +EA+ E + + + + K + + K + +KK + +
Sbjct: 1559 KAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEA 1618
Query: 172 VKKKEFTLEEEEKEKKPEWTK 192
K E + EE++KK E K
Sbjct: 1619 KIKAEELKKAEEEKKKVEQLK 1639
Score = 29.3 bits (65), Expect = 1.7
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 13/210 (6%)
Query: 2 ADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKK 61
AD+A KKA++A+ +K +K+ EEA KA +A K + K A E KK
Sbjct: 1317 ADEAKKKAEEAK--KKADAAKKKAEEAKKAAEAAKA-EAEAAADEAEAAEEKAEAAEKKK 1373
Query: 62 EQERKAA--------ERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDL 113
E+ +K A E+++ E + +D ADE K+ D A K EK
Sbjct: 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKA 1433
Query: 114 EIIFRVKEAEITELNAQVNDLRGKFIKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVK 173
+ + K E + + KK ++ K + +KKA E ++ K K
Sbjct: 1434 DEA-KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAK-KK 1491
Query: 174 KKEFTLEEEEKEKKPEWTKVGGDKGKEEES 203
+E + +E +K E K + K EE+
Sbjct: 1492 AEEAKKKADEAKKAAEAKKKADEAKKAEEA 1521
Score = 29.0 bits (64), Expect = 2.2
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 5 AAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQE 64
AA++AK+AE D+K+AE K+ EE K K A+ E KK L +K+A E+ K E+
Sbjct: 1663 AAEEAKKAEEDKKKAEEAKKAEEDEK-KAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
Query: 65 RKAAERRRV 73
+KA E ++
Sbjct: 1722 KKAEEENKI 1730
Score = 29.0 bits (64), Expect = 2.3
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 5 AAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQE 64
A + K+AE +K E +K+ EEA KA +AKK E KK +K + E +
Sbjct: 1420 ADEAKKKAEEKKKADEAKKKAEEAKKADEAKK---KAEEAKKAEEAKKKAEEAKKADEAK 1476
Query: 65 RKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEK 110
+KA E ++ E + + ADEA K+ D A K E K
Sbjct: 1477 KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
Score = 29.0 bits (64), Expect = 2.3
Identities = 57/197 (28%), Positives = 83/197 (42%), Gaps = 8/197 (4%)
Query: 6 AKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQER 65
A +AK+AE +K E +K+ EEA KA +AKK E KK +KKA E K +
Sbjct: 1292 ADEAKKAEEKKKADEAKKKAEEAKKADEAKK---KAEEAKKKADAAKKKAEEAKKAAEAA 1348
Query: 66 KAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEIT 125
KA E K A E + K+ D A K EK + + E +
Sbjct: 1349 KAEAEAAADEAEAAEEK--AEAAEKKKEEAKKKA-DAAKKKAEEKKKADEAKKKAEEDKK 1405
Query: 126 ELNAQVNDLRGKFIKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEEKE 185
+ + K KK ++ + K + +KKA E ++ K KK E + EE +
Sbjct: 1406 KADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAK--KKAEEAKKAEEAK 1463
Query: 186 KKPEWTKVGGDKGKEEE 202
KK E K + K+ E
Sbjct: 1464 KKAEEAKKADEAKKKAE 1480
Score = 28.6 bits (63), Expect = 2.9
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 6 AKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQER 65
A++A++AE +K+AE ++ EEA KA+ A+K + + R+ + +KA + K E+ R
Sbjct: 1111 AEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEAR 1170
Query: 66 KAAERRRVIEQR 77
KA + ++ R
Sbjct: 1171 KAEDAKKAEAAR 1182
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive
type) [DNA replication, recombination, and repair].
Length = 1444
Score = 30.4 bits (69), Expect = 0.75
Identities = 20/121 (16%), Positives = 47/121 (38%), Gaps = 4/121 (3%)
Query: 58 ELKKEQERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIF 117
L + + K +IEQ + + + ++ K+L ++F + E+
Sbjct: 114 SLLNKLKLKVKGNNILIEQVLNNPE--FDHFKNKSPELQKKL--QSFGFPQLLIEFEVND 169
Query: 118 RVKEAEITELNAQVNDLRGKFIKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEF 177
+E E + +N+ K + L+ K + + K++K F+ + K+ +E
Sbjct: 170 ISEEQEFEKFEEAINEEVEKAAQEALEAEKKLKAESPKVEKPKPLFDGQKGRKIKSTEEI 229
Query: 178 T 178
Sbjct: 230 K 230
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 30.2 bits (68), Expect = 0.83
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 16 RKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVIE 75
+RA+ R++ +K KK F+ R+ +LR+++ A EL E R
Sbjct: 289 EQRAQYREK-------QKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKN 341
Query: 76 QRCGTHKDWTNADEATVNKILKE 98
+ K+ A +I +E
Sbjct: 342 EAKARKKEIAQKRRAAEREINRE 364
>gnl|CDD|221313 pfam11917, DUF3435, Protein of unknown function (DUF3435). This
family of proteins are functionally uncharacterized.
This protein is found in eukaryotes. Proteins in this
family are typically between 435 to 791 amino acids in
length. This family is related to pfam00589 suggesting
it may be an integrase enzyme.
Length = 418
Score = 30.0 bits (68), Expect = 0.91
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 8 KAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERKA 67
+Q ID +R + E K + + PER + + LL +E L+ E ER+
Sbjct: 350 DEEQPVIDIERQLSGLAVSEEVKEDLPDEQLVPPERIRLISKLLTWPTSETLEDELERRI 409
Query: 68 A 68
A
Sbjct: 410 A 410
>gnl|CDD|238932 cd01972, Nitrogenase_VnfE_like, Nitrogenase_VnfE_like: VnfE subunit
of the VnfEN complex_like. This group in addition to
VnfE contains a subset of the alpha subunit of the
nitrogenase MoFe protein and NifE-like proteins. The
nitrogenase enzyme system catalyzes the ATP-dependent
reduction of dinitrogen to ammonia. NifEN participates
in the synthesis of the iron-molybdenum cofactor
(FeMoco) of MoFe protein of the
molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur
containing precursor of the FeMoco) from NifB is
transferred to NifEN where it is further processed to
FeMoco. VnfEN may similarly be a scaffolding protein
for the iron-vanadium cofactor (FeVco) of the
vanadium-dependent (V)-nitrogenase. NifE and NifN are
essential for the Mo-nitrogenase, VnfE and VnfN are not
essential for the V-nitrogenase. NifE and NifN can
substitute when the vnfEN genes are inactivated.
Length = 426
Score = 29.7 bits (67), Expect = 0.95
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 12 AEIDRKRAEVRKRMEEASKAKKAKKGFMT 40
A I+R+ V +EE KA K KK +
Sbjct: 271 AVIEREHERVAPEIEELRKALKGKKAIVE 299
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 29.9 bits (68), Expect = 0.98
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 19 AEVRKRMEEASKAKKAKKGFMTP----ERKKKLRLLLRKKAAEELKKEQERKAAE 69
AE+R +E KA++AK F ER+K R KKAAE + + A
Sbjct: 436 AEIRAIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDKDAVAA 490
>gnl|CDD|216807 pfam01956, DUF106, Integral membrane protein DUF106. This
archaebacterial protein family has no known function.
Members are predicted to be integral membrane proteins.
Length = 168
Score = 28.8 bits (65), Expect = 1.3
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 12/52 (23%)
Query: 14 IDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQER 65
IDRK + +KR +E K R ++LR K + ++ +K QE
Sbjct: 38 IDRKMEKYQKREKEIQK------------RARELRKNGDKLSPKKFEKRQEE 77
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 28.8 bits (64), Expect = 2.2
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 1 MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKK--AKKGFMTPERKKKLRLLLRKKAA 56
M AKKA + K+A +K + AKK AKK P KK + RK A
Sbjct: 992 MKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKAAG 1049
>gnl|CDD|177283 PHA00451, PHA00451, protein kinase.
Length = 362
Score = 28.2 bits (63), Expect = 2.7
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 12 AEIDRKRAEVRKRMEEASKAKKAK---KGFMTPERK-----KKLRLLLRKKAAEELKK-- 61
AE++ + RM E K +KAK G RK +K LR + A+EL
Sbjct: 235 AEVEAIANQ---RMIERCKNRKAKRDPNGTFQVARKAAMKRRKRNRKLRARNAKELAAMR 291
Query: 62 ---EQERKAAERRRVIEQRCGTHKDWTNADEATVNKI 95
Q R+ R R++ H W + + K+
Sbjct: 292 MEANQIRRNEPRARMLMGDKHWHNAWLHNNNLDFAKL 328
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 28.4 bits (64), Expect = 2.9
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 88 DEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKVS 147
V + LK+L +LE E E+I R + E+ E+ + L + LK+++
Sbjct: 189 LSDEVEEELKKLGFERLELEEEGTPSELI-REIKEELEEIEKERESLLEE-----LKELA 242
Query: 148 KYENKF 153
K +
Sbjct: 243 KKYLEE 248
>gnl|CDD|236698 PRK10475, PRK10475, 23S rRNA pseudouridine synthase F; Provisional.
Length = 290
Score = 28.2 bits (63), Expect = 3.4
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 5 AAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLR 48
A K K A I R ++ K E+ + K F +P RKKK R
Sbjct: 247 AKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 28.0 bits (63), Expect = 3.4
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 6 AKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQER 65
K+ + ++ ++ +EEA K + K K LL K+ +L+ E ER
Sbjct: 19 RKRIAEKKLGSAEELAKRIIEEAKKEAETLK---------KEALLEAKEEVHKLRAELER 69
Query: 66 KAAERRRVIEQR 77
+ ERR +++
Sbjct: 70 ELKERRNELQRL 81
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 28.0 bits (63), Expect = 3.4
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 28 ASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVIEQ 76
+ ++ + G ++P +KKLR R KA ++ +KE+ KAA +++
Sbjct: 395 EGEEEEGENGNLSPAERKKLRKKQR-KAEKKAEKEEAEKAAAKKKAEAA 442
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase.
Length = 448
Score = 28.1 bits (63), Expect = 3.9
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 4 DAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQ 63
D + +Q E+D R E K +E +K K A K T + L E + Q
Sbjct: 39 DKEWRQRQFELDSLRKEFNKLNKEVAKLKIA-KEDATELIAETKELKKEITEKEA--EVQ 95
Query: 64 ERKAA 68
E KAA
Sbjct: 96 EAKAA 100
>gnl|CDD|143463 cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcus jannaschii
NAD+-dependent lactaldehyde dehydrogenase-like.
NAD+-dependent, lactaldehyde dehydrogenase
(EC=1.2.1.22) involved the biosynthesis of coenzyme
F(420) in Methanocaldococcus jannaschii through the
oxidation of lactaldehyde to lactate and generation of
NAPH, and similar sequences are included in this CD.
Length = 456
Score = 28.1 bits (63), Expect = 4.1
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 18 RAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERKA 67
R EVR+ +E A KAK +R K L K AE +++ +E A
Sbjct: 20 REEVREAIEVAEKAKDVMSNLPAYKRYKILM-----KVAELIERRKEELA 64
>gnl|CDD|226654 COG4191, COG4191, Signal transduction histidine kinase regulating
C4-dicarboxylate transport system [Signal transduction
mechanisms].
Length = 603
Score = 28.1 bits (63), Expect = 4.4
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 47 LRLLLRKKAAEELKKEQERKAAERRR 72
R LR +E + E ER+ ER
Sbjct: 320 RRARLRLAELQEARAELERRVEERTA 345
>gnl|CDD|212510 cd11724, TP_methylase_like, Uncharacterized subfamily of S-AdoMet
dependent tetrapyrrole methylases. TP-methylases use
S-AdoMet (S-adenosyl-L-methionine or SAM) in the
methylation of diverse substrates. Most members
catalyze various methylation steps in cobalamin
(vitamin B12) biosynthesis, other members like
Diphthine synthase and Ribosomal RNA small subunit
methyltransferase I (RsmI) act on other substrates. The
function of this subfamily is not known.
Length = 255
Score = 27.7 bits (62), Expect = 4.4
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 36 KGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVIEQR 77
K F K L K E ++E++R+ E +VI +
Sbjct: 55 KLFWHYGGKPWENLEAEKSPREAFEEEKKRQREEFVKVIREA 96
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 27.7 bits (62), Expect = 4.5
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 2 ADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKK 61
AD A +A++ E++ + E+R R+EE A +A R+ L R + E
Sbjct: 307 ADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAA 366
Query: 62 EQERKAAERRRVIEQR 77
E E + E R +E R
Sbjct: 367 ELESELEEAREAVEDR 382
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 27.7 bits (63), Expect = 4.9
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 4 DAAKKAKQAEIDRKRAEVRKRMEEASK--AKKAKKGFMTPERKKKLRLLLRKKAAEELKK 61
D ++ Q E++ +AE R SK + +KG +++ L K+ + L+
Sbjct: 34 DEERRELQTELEELQAE-RN---ALSKEIGQAKRKGEDAEALIAEVKEL--KEEIKALEA 87
Query: 62 EQERKAAERR 71
E + AE
Sbjct: 88 ELDELEAELE 97
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 27.3 bits (61), Expect = 6.3
Identities = 21/134 (15%), Positives = 53/134 (39%), Gaps = 2/134 (1%)
Query: 4 DAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQ 63
A + + +++ R EV + EE + +K + + + + ++ L+++
Sbjct: 259 TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQL 318
Query: 64 ERKAAERRRVIEQRCGTHKDWT--NADEATVNKILKELWDRAFKLESEKYDLEIIFRVKE 121
E A+ + + ++ + + L+ L +LE+E +LE E
Sbjct: 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378
Query: 122 AEITELNAQVNDLR 135
++ L ++V L
Sbjct: 379 EQLETLRSKVAQLE 392
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 26.8 bits (60), Expect = 7.5
Identities = 13/67 (19%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 6 AKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQER 65
K ++ E ++ + +E ++ KK +K +++++ L K + EE +K +E+
Sbjct: 261 VDKTREEEEEKILKAAEEERQEEAQEKKEEK-----KKEEREA-KLAKLSPEEQRKLEEK 314
Query: 66 KAAERRR 72
+ ++ R
Sbjct: 315 ERKKQAR 321
>gnl|CDD|224328 COG1410, MetH, Methionine synthase I, cobalamin-binding domain
[Amino acid transport and metabolism].
Length = 842
Score = 27.3 bits (61), Expect = 7.6
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 28 ASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVIEQ-RCGTHKDWTN 86
AS+A M+ E++ RK+ + RKA R IE R W +
Sbjct: 520 ASRAVGVMDTLMSAEQRADYSEGFRKEYETVRTQHANRKARTRPLSIEAARDNAEAVWAD 579
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 26.8 bits (60), Expect = 8.6
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 24/79 (30%)
Query: 5 AAKKAKQAEIDRKRAEVRKRMEE--------ASKAKKAKKGFMTPERKKKLRLLLRKKAA 56
A + ++A K+ + + +E ASKAKKAK R K
Sbjct: 243 AERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKS---------------RIKRL 287
Query: 57 EELKKEQ-ERKAAERRRVI 74
E+L+ E + E + +
Sbjct: 288 EKLEARLAEERPVEEGKPL 306
>gnl|CDD|218843 pfam05988, DUF899, Bacterial protein of unknown function
(DUF899). This family consists of several
uncharacterized bacterial proteins of unknown function.
Length = 211
Score = 26.4 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 43 RKKKLRLLLRKKAAEELKKEQERKAAERRR 72
+ LL R+K EL + ++ AAERR
Sbjct: 13 LAARRALLAREK---ELTRARDALAAERRA 39
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 26.7 bits (60), Expect = 9.3
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 16/131 (12%)
Query: 6 AKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQER 65
KK +A+I E ++ +EEA K +A K K LL K+ +L+ E E+
Sbjct: 25 RKKIAEAKIKEAEEEAKRILEEAKKEAEAIK---------KEALLEAKEEIHKLRNEFEK 75
Query: 66 KAAERRRVI---EQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEA 122
+ ERR + E+R ++ + + K +EL + +LE ++ +LE KE
Sbjct: 76 ELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELE----KKEE 131
Query: 123 EITELNAQVND 133
E+ EL +
Sbjct: 132 ELEELIEEQLQ 142
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 27.0 bits (60), Expect = 9.4
Identities = 42/201 (20%), Positives = 79/201 (39%), Gaps = 22/201 (10%)
Query: 11 QAEIDRKRAEVR--KRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK-KEQERKA 67
+AEID+ AE+ +R E + ++ K E K++L L + + + E +
Sbjct: 328 EAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL 387
Query: 68 AERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITEL 127
+ R +E+ + + + L L + +L E DL EA+I EL
Sbjct: 388 KDYREKLEK--------LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINEL 439
Query: 128 NAQVNDLRGKF------IKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEE 181
+ D + ++ +SKYE + L+++ K + K + L E
Sbjct: 440 EEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE-----KELSKLQRELAE 494
Query: 182 EEKEKKPEWTKVGGDKGKEEE 202
E + + +V G + EE
Sbjct: 495 AEAQARASEERVRGGRAVEEV 515
>gnl|CDD|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast. This
model is designed to capture orthologs of bacterial
transketolases. The group includes two from the yeast
Saccharomyces cerevisiae but excludes dihydroxyactetone
synthases (formaldehyde transketolases) from various
yeasts and the even more distant mammalian
transketolases. Among the family of thiamine
diphosphate-dependent enzymes that includes
transketolases, dihydroxyacetone synthases, pyruvate
dehydrogenase E1-beta subunits, and
deoxyxylulose-5-phosphate synthases, mammalian and
bacterial transketolases seem not to be orthologous
[Energy metabolism, Pentose phosphate pathway].
Length = 653
Score = 26.6 bits (59), Expect = 9.8
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 139 IKPTLKKVSKYENKFAKLQKK----AAEFNFR 166
+ K ++ FA +KK AAEF R
Sbjct: 295 KERGAKAEQEWNELFAAYKKKYPELAAEFTRR 326
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.126 0.337
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,321,253
Number of extensions: 1006252
Number of successful extensions: 3247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2459
Number of HSP's successfully gapped: 544
Length of query: 203
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 111
Effective length of database: 6,857,034
Effective search space: 761130774
Effective search space used: 761130774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (25.8 bits)