RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4486
(203 letters)
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Length = 182
Score = 96.5 bits (240), Expect = 1e-25
Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 6/174 (3%)
Query: 31 AKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVIEQRCGTHKDWTNADEA 90
+ + KK R++ L+ + + A E++KE K E++ + +
Sbjct: 1 SDEEKKRRAATARRQHLKSAMLQLAVTEIEKEAAAKEVEKQNYLAEHSPPLSL--PGSMQ 58
Query: 91 TVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKVSKYE 150
+ ++ K+L + ++ E+YD E+ + E+ +L+ ++ DLRGKF +P L++V
Sbjct: 59 ELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDLRGKFKRPPLRRVRMSA 118
Query: 151 NKFAKL---QKKAAEFNFRNQLKVVKKKEFTLEEEEKEKKPEWTKVGGDKGKEE 201
+ + K + R LK V KKE T +E++ +W K +K E
Sbjct: 119 DAMLRALLGSKHKVNMDLRANLKQV-KKEDTEKEKDLRDVGDWRKNIEEKSGME 171
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
3.30A {Homo sapiens} SCOP: h.1.25.2
Length = 180
Score = 94.3 bits (234), Expect = 1e-24
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 7/175 (4%)
Query: 30 KAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVIEQRCGTHKDWTNADE 89
+ KK ++ RK +L+ LL + A +EL++E E + E+ R + R +
Sbjct: 2 EPHAKKKSKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRAQP-LELAGLGF 60
Query: 90 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKVSKY 149
A + + ++L R K++ E+YD+E EI +L ++ DLRGKF +PTL++V
Sbjct: 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKRPTLRRVRIS 120
Query: 150 ENKFAKL---QKKAAEFNFRNQLKVVKKKEFTLEEEEKEKKPEWTKVGGDKGKEE 201
+ + + + R LK VKK++ E+E + +W K E
Sbjct: 121 ADAMMQALLGARAKESLDLRAHLKQVKKED---TEKENREVGDWRKNIDALSGME 172
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.2
Length = 133
Score = 86.1 bits (213), Expect = 5e-22
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Query: 30 KAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVIEQRCGTHKDWTNADE 89
+ KK ++ RK +L+ LL + A +EL++E E + E+ R + R +
Sbjct: 2 EPHAKKKSKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRAQP-LELAGLGF 60
Query: 90 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKVSK 148
A + + ++L R K++ E+YD+E EI +L ++ DLRGKF +PTL++V
Sbjct: 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKRPTLRRVRI 119
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 2e-06
Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 76 QRCGTHKD-WTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEA--EITELN--AQ 130
Q G D + + A +++W+RA + Y I+ V +T +
Sbjct: 1627 QEQGMGMDLYKTSKAA------QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680
Query: 131 VNDLRGKFIKPTLKKVS----KYENKFAKLQKKAAEFNFRNQLKVVKKKEFT 178
+R + + + K E F ++ + + + FR++ ++ +FT
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Score = 39.3 bits (91), Expect = 7e-04
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 23/96 (23%)
Query: 47 LRLLLRKKAAEELKKEQER-KAAERRRVIEQRCGT-----HKDW-TNADEATVNKILKEL 99
L L LRK A +Q R +ER+ R H A + I K+L
Sbjct: 389 LNLTLRKAKAPS-GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASD----LINKDL 443
Query: 100 WDRAFKLESEKYDLEI-IF--------RVKEAEITE 126
++ D++I ++ RV I+E
Sbjct: 444 VKNNVSFNAK--DIQIPVYDTFDGSDLRVLSGSISE 477
Score = 35.0 bits (80), Expect = 0.016
Identities = 26/179 (14%), Positives = 51/179 (28%), Gaps = 52/179 (29%)
Query: 25 MEEASKAKKAKKGFMTPER-KKKLRLLLRKKAAEELKKEQERKA----AERRRVIEQRCG 79
M+ +K A+ + R + + + E+ + I +
Sbjct: 1633 MDLYKTSKAAQDVW---NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 80 THKDWTNADEATVN-KILKELWDRAFKLESEKYDLEIIFRVKEAEI--TELNAQ------ 130
T D KI KE+ + + FR ++ + T+ Q
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTS---------YTFRSEKGLLSATQ-FTQPALTLM 1739
Query: 131 ----VNDLRGKFIKPTLKKVSKYENKFA--------KLQKKAAE---FNFRNQLKVVKK 174
DL+ K + P + FA L A+ + + ++VV
Sbjct: 1740 EKAAFEDLKSKGLIPA-------DATFAGHSLGEYAAL---ASLADVMSIESLVEVVFY 1788
Score = 31.9 bits (72), Expect = 0.14
Identities = 14/116 (12%), Positives = 33/116 (28%), Gaps = 34/116 (29%)
Query: 7 KKAKQAEIDRKRAEVRKRMEEASKAKKAK--KGF-----------MTPERKKKLRLLLRK 53
K + +D+ R +R K K F + P + L++
Sbjct: 395 KAKAPSGLDQSRIPFSER--------KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 54 K---AAEELK---------KE-QERKAAERRRVIEQRCGTHKDWTNADEATVNKIL 96
A++++ + + + R+++ W + IL
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Length = 107
Score = 42.6 bits (100), Expect = 6e-06
Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 54 KAAEELKKEQERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDL 113
A++ + +++ +++V+ +R + + +E + KELWD ++L++EKYD
Sbjct: 10 AKADQKRGKKQTARETKKKVLAERRKP-LNIDHLNEDKLRDKAKELWDWLYQLQTEKYDF 68
Query: 114 EIIFRVKEAEITELNAQVNDLRGKFIKPTLKK 145
+ K+ EI L +++ + K K
Sbjct: 69 AEQIKRKKYEIVTLRNRIDQAQKHSKKAGAKG 100
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 40.1 bits (94), Expect = 3e-04
Identities = 30/184 (16%), Positives = 58/184 (31%), Gaps = 13/184 (7%)
Query: 16 RKRAEVRKRMEEA-SKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVI 74
++ VRKR + + + K +++LR+ + ++K R R
Sbjct: 826 QRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHV-RGWLARVHYH 884
Query: 75 EQRCGTHKDWTNADEATVNKILKEL---WDRAFKLESEKYDLEIIFRVKEAEITELNAQV 131
+ LK+L + + LE + +I E N +
Sbjct: 885 RTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEY 944
Query: 132 NDLRGKFIKPTLKKV---SKYENKFAKLQKKAAEF-NFRNQLKV----VKKKEFTLEEEE 183
L K + K + +L+ E N N++ + K L + +
Sbjct: 945 KSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004
Query: 184 KEKK 187
EKK
Sbjct: 1005 TEKK 1008
Score = 32.4 bits (74), Expect = 0.087
Identities = 25/169 (14%), Positives = 64/169 (37%), Gaps = 16/169 (9%)
Query: 8 KAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLR------KKAAEELKK 61
K ++ K +++++++E +K K+ E+ L + + E L+
Sbjct: 920 KKLHIGLENKIMQLQRKIDEQNKEYKSLL-----EKMNNLEITYSTETEKLRSDVERLRM 974
Query: 62 --EQERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRV 119
E+ + A R +++ + + + I + + E +L+ +
Sbjct: 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTL 1034
Query: 120 KEAEITELNAQVNDLRGKFIKPTLKKVSKYENKFAKLQKKAAEFNFRNQ 168
+ E ELN +++D + + KK+ + +L+ + R Q
Sbjct: 1035 LKTEKEELNRRIHDQAKEITETMEKKL---VEETKQLELDLNDERLRYQ 1080
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 40.2 bits (94), Expect = 3e-04
Identities = 33/178 (18%), Positives = 68/178 (38%), Gaps = 6/178 (3%)
Query: 10 KQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAE 69
++ E+ K E+++ E KA+ K E+K + E+L+ E E A
Sbjct: 855 QEEEMQAKDEELQRTKERQQKAEAELKEL---EQKHTQLCEEKNLLQEKLQAETELYAEA 911
Query: 70 RRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNA 129
R K + ++E +R+ +L++EK ++ E ++ E A
Sbjct: 912 EEMR--VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969
Query: 130 QVNDLRGKFIKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEEKEKK 187
L+ K+ K E+ ++ + + +L + + T E+E+K
Sbjct: 970 ARQKLQ-LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK 1026
Score = 33.7 bits (77), Expect = 0.042
Identities = 33/199 (16%), Positives = 74/199 (37%), Gaps = 29/199 (14%)
Query: 4 DAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQ 63
+K + + + + E+A K K + + ++RL +K+ +EL+K +
Sbjct: 1003 TKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIK 1062
Query: 64 ERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAE 123
+ E +L ++ +L+++ +L+ KE E
Sbjct: 1063 RKLEGE--------------------------SSDLHEQIAELQAQIAELKAQLAKKEEE 1096
Query: 124 ITELNAQVNDLRGKFIKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEE 183
+ A++ D + LKK+ + E+ + LQ+ + +K++ L EE
Sbjct: 1097 LQAALARLEDETSQKNN-ALKKIRELESHISDLQEDLES--EKAARNKAEKQKRDLSEEL 1153
Query: 184 KEKKPEWTKVGGDKGKEEE 202
+ K E ++E
Sbjct: 1154 EALKTELEDTLDTTATQQE 1172
Score = 30.2 bits (68), Expect = 0.47
Identities = 35/207 (16%), Positives = 81/207 (39%), Gaps = 5/207 (2%)
Query: 1 MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK 60
+ + K+ + E + EEA++ K + + KK+ + + K
Sbjct: 942 RSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001
Query: 61 KEQERKAAERR-RVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEK---YDLEII 116
+ERK E R + ++ NK + + +L+ E+ +LE I
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1061
Query: 117 FRVKEAEITELNAQVNDLRGKFIKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKE 176
R E E ++L+ Q+ +L+ + I +++K E + + + + + K +E
Sbjct: 1062 KRKLEGESSDLHEQIAELQAQ-IAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE 1120
Query: 177 FTLEEEEKEKKPEWTKVGGDKGKEEES 203
+ ++ E K +K ++++
Sbjct: 1121 LESHISDLQEDLESEKAARNKAEKQKR 1147
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.004
Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 28/114 (24%)
Query: 84 WTNADEATVNKILKELWDRAFKLESEK------YDLEIIFRVKEAEITELNAQV----ND 133
W + ++ V ++ +L + + K + + +VK L+ + N
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 134 LRG----KFIKPT------------LKKVSKYENKFAKLQKKAAEFNF-RNQLK 170
+ I P LK + E + + +F F +++
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE-RMTLFRMVFLDFRFLEQKIR 508
Score = 36.4 bits (83), Expect = 0.005
Identities = 34/203 (16%), Positives = 69/203 (33%), Gaps = 46/203 (22%)
Query: 15 DRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRVI 74
D +++V + + K +K E + + ELK + E + A R ++
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQP--KESTISIPSIYL-----ELKVKLENEYALHRSIV 450
Query: 75 EQRCGTHKDWTNADEATVNKILKELWDRAF---------KLE-SEKYDL-EII---FRVK 120
+ K + + + ++ D+ F +E E+ L ++ FR
Sbjct: 451 DHY-NIPKTFDS------DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 121 EAEI----TELNAQ------VNDLR--GKFIKPTLKKVSKYENKFAKLQKKAAEFNFRN- 167
E +I T NA + L+ +I K + N K E +
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 168 -----QLKVVKKKEFTLEEEEKE 185
++ ++ + E EE K+
Sbjct: 564 YTDLLRIALMAEDEAIFEEAHKQ 586
Score = 31.4 bits (70), Expect = 0.19
Identities = 20/124 (16%), Positives = 36/124 (29%), Gaps = 26/124 (20%)
Query: 12 AEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLL---LRKKA------------- 55
D K +V+ + ++ M+ + L L K
Sbjct: 31 DNFDCK--DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88
Query: 56 ------AEELKKEQERKAAERRRVIEQRCGTHKDWTNADEATVN--KILKELWDRAFKLE 107
+K EQ + + R IEQR + D + V+ + +L +L
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 108 SEKY 111
K
Sbjct: 149 PAKN 152
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A
{Sulfolobus tokodaii}
Length = 522
Score = 35.2 bits (82), Expect = 0.010
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 1 MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP-ERKKKLRLLL 51
M + + E+ + + + K + + KG +T ER L LL
Sbjct: 2 MYEKPPVEKLIEELRQLKEKAYKGGGDERIQFQHSKGKLTARER---LALLF 50
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Length = 106
Score = 32.7 bits (74), Expect = 0.021
Identities = 25/97 (25%), Positives = 48/97 (49%)
Query: 51 LRKKAAEELKKEQERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEK 110
++K+A E K + + E+++ I + +E + + KELW + LE+EK
Sbjct: 6 IQKQAQTERKSGKRQTEREKKKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEAEK 65
Query: 111 YDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKVS 147
+DL+ F+ ++ EI L ++ND + KV+
Sbjct: 66 FDLQEKFKQQKYEINVLRNRINDNQKVSKTRGKAKVT 102
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain
duplication, multienzyme complex, transcarboxylase;
HET: MCA; 1.90A {Propionibacterium freudenreichii}
SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*
Length = 523
Score = 31.4 bits (72), Expect = 0.21
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 8 KAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP-ERKKKLRLLL 51
+ + ++ +R + E K+ +G T ER L LL
Sbjct: 13 EGRVEQLAEQRQVIEAGGGERRVEKQHSQGKQTARER---LNNLL 54
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin
biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella
typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Length = 196
Score = 30.1 bits (68), Expect = 0.30
Identities = 10/54 (18%), Positives = 15/54 (27%), Gaps = 1/54 (1%)
Query: 64 ERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAF-KLESEKYDLEII 116
ER E V Q T W + +W L D+ ++
Sbjct: 73 ERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVWQHGKRMLADPLLDMVVL 126
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC,
PCC, CT, carboxyltransfe polyketide, fatty acid, PKS,
FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A
3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Length = 530
Score = 30.6 bits (70), Expect = 0.33
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 8 KAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP-ERKKKLRLLL 51
K A++ R+ E + K+ KG +T ER + LLL
Sbjct: 15 AGKLADLRRRIEEATHAGSARAVEKQHAKGKLTARER---IDLLL 56
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis,
accase, ligase, transferase; 2.2A {Mycobacterium
tuberculosis} PDB: 2a7s_A
Length = 548
Score = 30.2 bits (69), Expect = 0.42
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 8 KAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP-ERKKKLRLLL 51
K AE+ ++R E + E + K KG +T ER + LL
Sbjct: 26 AGKLAELHKRREESLHPVGEDAVEKVHAKGKLTARER---IYALL 67
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint
center for structural genomics, JCSG, protein structu
initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima}
SCOP: c.14.1.4 c.14.1.4
Length = 527
Score = 30.2 bits (69), Expect = 0.48
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 8 KAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP-ERKKKLRLLL 51
+ K E+ + E+ + K+ + G +T ER L LLL
Sbjct: 16 RDKIEELKKIEKEIEQGGGPEKVEKQHRAGKLTAWER---LELLL 57
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Roseobacter denitrificans}
Length = 531
Score = 30.2 bits (69), Expect = 0.50
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 1 MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP-ERKKKLRLLL 51
K +++ +RA R + + +G +T ER + LLL
Sbjct: 16 PRGSHMMKDILEQLEDRRAAARLGGGQKRIDAQHGRGKLTARER---VDLLL 64
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 30.1 bits (68), Expect = 0.50
Identities = 14/98 (14%), Positives = 31/98 (31%)
Query: 2 ADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKK 61
D+ + + D + + K K+ E + L A+ L
Sbjct: 38 KADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALAN 97
Query: 62 EQERKAAERRRVIEQRCGTHKDWTNADEATVNKILKEL 99
+ + + R +I++ EA + L+E+
Sbjct: 98 LKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREI 135
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia
coli} PDB: 3crc_A*
Length = 265
Score = 28.6 bits (65), Expect = 1.0
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 155 KLQKKAAE--FNFRNQLKVVKKKEFTLEEEEKEKKPEWTKVGGDKGKEEE 202
K+QK+ A F++ VV K + EE E E + D+ K EE
Sbjct: 149 KIQKRCANVGFDWTTLGPVVDK----VYEEIDEVMYEARQAVVDQAKLEE 194
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 28.1 bits (63), Expect = 2.1
Identities = 25/243 (10%), Positives = 66/243 (27%), Gaps = 55/243 (22%)
Query: 12 AEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEEL------------ 59
A+++ +RA + + + +A + + ++ L + E +
Sbjct: 748 AQLEEERASEQTKSDYLKRANELVQWIND--KQASLESRDFGDSIESVQSFMNAHKEYKK 805
Query: 60 ----------------------KKEQERKAAERRRVIEQRCGTHKDWTNADEAT------ 91
K ++ W+ ++A
Sbjct: 806 TEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEA 865
Query: 92 ----------VNKILKELWDRAFKLESEKYDLEIIFRVKEAE--ITELNAQVNDLRGKFI 139
+ +L++ KLE+ + E IT + A++ +L F
Sbjct: 866 LRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLE-AFD 924
Query: 140 KPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEEKEKKPEWTKVGGDKGK 199
+ + + + E N+ ++ ++K+ ++ K
Sbjct: 925 GECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLA 984
Query: 200 EEE 202
E E
Sbjct: 985 ELE 987
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 4.1
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 5 AAKKAKQAEIDRK-RAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQ 63
A + ++ E RK R E RKR++E A K + + KK L ++++ + K +
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136
Query: 64 ERKAAE 69
+ A+
Sbjct: 137 NNRIAD 142
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 27.1 bits (60), Expect = 4.6
Identities = 12/117 (10%), Positives = 28/117 (23%), Gaps = 10/117 (8%)
Query: 3 DDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKE 62
D K+ + + + + + + L + E +
Sbjct: 629 DTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAEFTRL 688
Query: 63 QERKAAERRRVIEQR----------CGTHKDWTNADEATVNKILKELWDRAFKLESE 109
A+E R + TVN+++ L K+ +
Sbjct: 689 LGLGASEGDARTIARDPALLAFVGGAAPGDTFAQVASWTVNELVAGLRAGEVKVRAA 745
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 27.1 bits (60), Expect = 4.9
Identities = 8/62 (12%), Positives = 23/62 (37%)
Query: 5 AAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQE 64
K + + +++ +R++ + K A + P ++K + K + E +
Sbjct: 308 DLKNSVEVALNKLLDPIREKFNTPALKKLASAAYPDPSKQKPMAKGPAKNSEPEEVILEH 367
Query: 65 RK 66
Sbjct: 368 HH 369
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 27.1 bits (59), Expect = 5.0
Identities = 17/77 (22%), Positives = 31/77 (40%)
Query: 1 MADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELK 60
+ K + + + K + KKG T KK + ++ KKAA K
Sbjct: 341 LRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKK 400
Query: 61 KEQERKAAERRRVIEQR 77
++K AE++ E++
Sbjct: 401 PAADKKPAEKKPTTEEK 417
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Length = 250
Score = 26.7 bits (58), Expect = 5.3
Identities = 9/94 (9%), Positives = 31/94 (32%)
Query: 8 KAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERKA 67
K+ ++ + A ++ + + + +K T + + +++ E E +
Sbjct: 151 KSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWEYECEP 210
Query: 68 AERRRVIEQRCGTHKDWTNADEATVNKILKELWD 101
+ + ++ + + I LW
Sbjct: 211 GMVKGIHHGPSVAQPIHLDSTQLSRKFISDYLWS 244
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit;
carboxyltransferase, beta-BETA-alpha superhelix,
ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB:
3u9s_B* 3u9t_B
Length = 555
Score = 26.8 bits (60), Expect = 6.4
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 5 AAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP-ERKKKLRLLL 51
A + + + + A++A+ + +G + ER + LL
Sbjct: 40 ATMLEQVNALRTLLGRIHEGGGSAAQARHSARGKLLVRER---INRLL 84
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 26.5 bits (59), Expect = 7.0
Identities = 7/70 (10%), Positives = 19/70 (27%), Gaps = 2/70 (2%)
Query: 4 DAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLR-KKAAEELKK- 61
+ + +I E E + + + L R ++ ++L
Sbjct: 76 WQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLL 135
Query: 62 EQERKAAERR 71
+ E +
Sbjct: 136 YPKEAQLEEQ 145
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 26.7 bits (59), Expect = 7.8
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 89 EATVNKILKEL---WDRA-FKLESEKYDLEIIFRVKE--AEITELNAQVNDLRG-KFIKP 141
E + K L + W A +++ L+++ E ++ ++ + K
Sbjct: 220 EFVIEKSLNRIKKFWKEAQYEVIEHSSGLKLVREWDVLEQACKEDLEELVSMKASNYYKI 279
Query: 142 TLKKVSKYENKFAKLQK 158
+ E+K KL +
Sbjct: 280 FEQDCLDLESKLTKLSE 296
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 26.4 bits (58), Expect = 7.9
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 13/126 (10%)
Query: 81 HKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKE--AEITELNAQVNDLRGKF 138
W+ V K L++ + L + + + NA + DL +
Sbjct: 53 ETAWSAIIPRKVRKSLEDTLQKLKNLPNRIRQYSAFDHAQNLIKIYLKGNAIITDLHSEA 112
Query: 139 IKP----TLKKVSKYENKFAKLQ-KKAAEFNFRNQLKVVKK------KEFTLEEEEKEKK 187
IK LKK +L + + + ++ E LEE K +
Sbjct: 113 IKDRHWKILKKRLNTNWIITELTLGSIWDSDLARNENIYREVITAAQGEIALEEFLKGVR 172
Query: 188 PEWTKV 193
WT +
Sbjct: 173 EFWTTL 178
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 26.0 bits (58), Expect = 8.7
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 2 ADDAAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKK 61
A+ + ++D ++ +E K KAK+ +K +L KK E +
Sbjct: 37 AEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKED-AKDLIAEKEKLSNEKKEIIEKEA 95
Query: 62 EQERKAAERRRVI 74
E ++ + +
Sbjct: 96 EADKNLRSKINQV 108
>1xax_A Hypothetical UPF0054 protein HI0004; structural genomics, MMP,
hydrolase, protein structure initiative, S2F, structure
2 function project; NMR {Haemophilus influenzae}
Length = 154
Score = 25.7 bits (57), Expect = 9.1
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 86 NADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPT 142
N + + + + A + E + ++ + V EAE ELN RGK +PT
Sbjct: 14 NIEGLPTEEQIVQWATGAVQPEGNEVEMTVRI-VDEAESHELNLT---YRGK-DRPT 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.126 0.337
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,087,445
Number of extensions: 188749
Number of successful extensions: 840
Number of sequences better than 10.0: 1
Number of HSP's gapped: 762
Number of HSP's successfully gapped: 187
Length of query: 203
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 114
Effective length of database: 4,216,824
Effective search space: 480717936
Effective search space used: 480717936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.4 bits)