RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4486
         (203 letters)



>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B
          subunit, PccB {Mycobacterium tuberculosis [TaxId:
          1773]}
          Length = 258

 Score = 28.6 bits (63), Expect = 0.40
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 9  AKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP-ERKKKLRLLLRKKAAEEL 59
           K AE+ ++R E    + E +  K   KG +T  ER   +  LL + +  EL
Sbjct: 8  GKLAELHKRREESLHPVGEDAVEKVHAKGKLTARER---IYALLDEDSFVEL 56


>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B
          subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
          Length = 258

 Score = 27.8 bits (61), Expect = 0.85
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 4/76 (5%)

Query: 10 KQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP-ERKKKLRLLLRKKAAEELKKEQERKAA 68
          K A++ R+  E        +  K+  KG +T  ER   + LLL + +  EL +    ++ 
Sbjct: 8  KLADLRRRIEEATHAGSARAVEKQHAKGKLTARER---IDLLLDEGSFVELDEFARHRST 64

Query: 69 ERRRVIEQRCGTHKDW 84
                 +  G     
Sbjct: 65 NFGLDANRPYGDGVVT 80


>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase
          (transcarboxylase 12S) {Propionibacterium
          freudenreichii [TaxId: 1744]}
          Length = 253

 Score = 27.1 bits (59), Expect = 1.3
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 5  AAKKAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP-ERKKKLRLLL 51
          +  + +  ++  +R  +     E    K+  +G  T  ER   L  LL
Sbjct: 4  STMEGRVEQLAEQRQVIEAGGGERRVEKQHSQGKQTARER---LNNLL 48


>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B
          subunit, PccB {Thermotoga maritima [TaxId: 2336]}
          Length = 251

 Score = 26.6 bits (58), Expect = 1.8
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 8  KAKQAEIDRKRAEVRKRMEEASKAKKAKKGFMTP-ERKKKLRLLL 51
          + K  E+ +   E+ +        K+ + G +T  ER   L LLL
Sbjct: 4  RDKIEELKKIEKEIEQGGGPEKVEKQHRAGKLTAWER---LELLL 45


>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 108

 Score = 24.2 bits (52), Expect = 6.5
 Identities = 8/43 (18%), Positives = 14/43 (32%)

Query: 23 KRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQER 65
               A  AK +  G         LR+   K  +  +K   ++
Sbjct: 53 ADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDK 95


>d2pu9b1 b.34.4.3 (B:1-73) Ferredoxin thioredoxin reductase (FTR),
           alpha (variable) chain {Synechocystis sp. [TaxId: 1143]}
          Length = 73

 Score = 23.1 bits (50), Expect = 9.5
 Identities = 8/28 (28%), Positives = 16/28 (57%)

Query: 126 ELNAQVNDLRGKFIKPTLKKVSKYENKF 153
           E+ A + + +G+ I   L  + K+E +F
Sbjct: 34  EVAAVLTEWQGRPISANLPVLVKFEQRF 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.126    0.337 

Gapped
Lambda     K      H
   0.267   0.0622    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 749,281
Number of extensions: 36719
Number of successful extensions: 194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 58
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.7 bits)