BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4487
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WFG|A Chain A, Pdz Domain Of Human Rim2b
Length = 131
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 79/112 (70%), Gaps = 3/112 (2%)
Query: 82 HPLSWKPSADGKYMIGHMILRK---SGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVK 138
HP++W+PS DG +IG ++L K G + + LG+KV+GGK+ E G A I KVK
Sbjct: 14 HPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVK 73
Query: 139 KGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190
KGS AD GHL GD+V+EWNGR ++G +F++V +II ES+ EPQVEL+VSR
Sbjct: 74 KGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSR 125
>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In Complex
With An Elks1b C-Terminal Peptide
Length = 114
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 80/110 (72%)
Query: 81 AHPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKG 140
+HP++W+PS +G +IG +IL K + + LG+KV+GGK+ + G GA I KVKKG
Sbjct: 5 SHPVTWQPSKEGDRLIGRVILNKRTTMPKESGALLGLKVVGGKMTDLGRLGAFITKVKKG 64
Query: 141 SPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190
S AD+ GHL AGD+V+EWNG+ + G + ++V +II ES+ EPQVE+IVSR
Sbjct: 65 SLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSR 114
>pdb|2CSS|A Chain A, Solution Structure Of The Pdz Domain Of Human Kiaa0340
Protein
Length = 121
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 78/111 (70%)
Query: 84 LSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPA 143
++W+PS +G +IG +IL K + + LG+KV+GGK+ + G GA I KVKKGS A
Sbjct: 8 VTWQPSKEGDRLIGRVILNKRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLA 67
Query: 144 DLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQP 194
D+ GHL AGD+V+EWNG+ + G + ++V +II ES+ EPQVE+IVSR P
Sbjct: 68 DVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPSGP 118
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 90 ADGKYMIGHM---ILRKSGDRYPSASSTLGIKVIGGKLL--EDGTRGAIIEKVKKGSPAD 144
+ G Y+ H I R S D S + LGI+++GGK + G GA I K+ G A+
Sbjct: 5 SSGHYIFPHARIKITRDSKDHTVSGNG-LGIRIVGGKEIPGHSGEIGAYIAKILPGGSAE 63
Query: 145 LEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQV 184
G L+ G QV+EWNG + K++++V+ II++ E ++
Sbjct: 64 QTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEI 103
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 272 SVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
S+K + D +L+VT++ A L R +G+PR PY KIY LPDR
Sbjct: 11 SIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDR 54
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 272 SVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
S+K + D +L+VT++ A L R +G+PR PY KIY LPDR
Sbjct: 8 SIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDR 51
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKS 167
S+ LG ++GG EDG G + + G PADL G L GDQ++ NG +RG S
Sbjct: 13 STGLGFNIVGG---EDG-EGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGAS 64
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
S+ LG ++GG EDG G I + G PADL G L GDQ++ NG +R S +
Sbjct: 317 STGLGFNIVGG---EDG-EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHE 370
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 110 SASSTLGIKVIGGKLLED-GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
S S+ LG+ V G + E+ G ++ + G A +G L DQ+I NG S+ GK+
Sbjct: 18 SGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKAN 77
Query: 169 QDVEDII-----AESRQEPQVELIVSRRI 192
Q+ + + E + ++LIV+RRI
Sbjct: 78 QEAMETLRRSMSTEGNKRGMIQLIVARRI 106
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
S+ LG +IGG EDG G I + G PADL G L GDQ++ NG +R S +
Sbjct: 23 GSTGLGFNIIGG---EDG-EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHE 77
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 110 SASSTLGIKVIGGKLLED-GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
S S+ LG+ V G + E+ G ++ + G A +G L DQ+I NG S+ GK+
Sbjct: 15 SGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKAN 74
Query: 169 QDVEDII-----AESRQEPQVELIVSRRI 192
Q+ + + E + ++LIV+RRI
Sbjct: 75 QEAMETLRRSMSTEGNKRGMIQLIVARRI 103
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
S+ LG ++GG EDG G I + G PADL G L GDQ++ NG +R S +
Sbjct: 23 GSTGLGFNIVGG---EDG-EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHE 77
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 41.6 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLED---GTRGAIIEKVKKGSPADLEGHLLA 151
M G +I + D+ + + GI ++ G++ + T G I+ + SPA L G L
Sbjct: 1 MAGELIHMVTLDK--TGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKV 58
Query: 152 GDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
GD+++ NG+ +R + Q V D+I E+ + ++E+
Sbjct: 59 GDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEI 93
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
S+ LG ++GG+ E G I + G PADL G L GDQ++ NG +R S +
Sbjct: 15 GSTGLGFNIVGGEXGE----GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHE 69
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With The
C Tail Peptide Of Glur2
Length = 111
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
A + +GI + GG G I +V +PA L+G + AGD++ NGRS++GK+ +
Sbjct: 15 AQNLIGISIGGGAQY---CPGLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVE 71
Query: 171 VEDIIAESRQE 181
V +I E + E
Sbjct: 72 VAKMIQEVKGE 82
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
S+ LG ++GG+ E G I + G PADL G L GDQ++ NG +R S +
Sbjct: 20 GSTGLGFNIVGGEXGE----GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHE 74
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 134 IEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQV 184
I +V +PA L+G + AGD++ NGRS++GK+ +V +I E + E +
Sbjct: 54 IVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 104
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%)
Query: 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE 172
S LG+ +I G G G I+ + GSPA +G L GD+++E NG S+ G +
Sbjct: 19 SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAV 78
Query: 173 DII 175
D+I
Sbjct: 79 DLI 81
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
S+ LG ++GG EDG G + + G PADL G L GD+++ NG ++R + +
Sbjct: 24 GSTGLGFNIVGG---EDG-EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQ 79
Query: 171 VEDIIAESRQ 180
+ + Q
Sbjct: 80 AAAALKRAGQ 89
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMR 164
S+ LG ++GG EDG G + + G PADL G L GD+++ NG ++R
Sbjct: 22 STGLGFNIVGG---EDG-EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLR 70
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 132 AIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE 177
II ++ KG A+ G L GD+V+E NG +RGK +V D++++
Sbjct: 50 VIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSD 95
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 38.5 bits (88), Expect = 0.004, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 134 IEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQE 181
I +V +PA L+G + AGD++ NGRS++GK+ +V +I E + E
Sbjct: 32 IVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE 79
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 134 IEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQE 181
I +V +PA L+G + AGD++ NGRS++GK+ +V +I E + E
Sbjct: 49 IVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE 96
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LGI + GGK E G +I ++ G PAD G L GD ++ NG ++R ++ I
Sbjct: 16 LGISITGGK--EHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTI 72
Query: 175 IAESRQEPQVELI 187
+++ R E + E++
Sbjct: 73 LSQQRGEIEFEVV 85
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 110 SASSTLGIKVIGGKLLEDGTR-GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
S S+ LG+ + G K E GT G I+ + G A +G L DQ+I NG ++ GKS
Sbjct: 34 SGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSN 93
Query: 169 QDVEDII-----AESRQEPQVELIVSRRIQP 194
+ + + E ++L++ RR P
Sbjct: 94 HEAMETLRRSMSMEGNIRGMIQLVILRRSGP 124
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LGI + GGK E G +I ++ G PAD G L GD ++ NG ++R ++ I
Sbjct: 41 LGISITGGK--EHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTI 97
Query: 175 IAESRQEPQVELI 187
+++ R E + E++
Sbjct: 98 LSQQRGEIEFEVV 110
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
Length = 106
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
+G+ ++ K G ++ V KG AD++G L AGDQ++ +GRS+ G S + ++
Sbjct: 23 MGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAEL 82
Query: 175 IAESRQEPQVELIVSRR 191
+ +R V L V+++
Sbjct: 83 M--TRTSSVVTLEVAKQ 97
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery Of
Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
+G+ ++ K G ++ V KG AD++G L AGDQ++ +GRS+ G S + ++
Sbjct: 23 MGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAEL 82
Query: 175 IAESRQEPQVELIVSRR 191
+ +R V L V+++
Sbjct: 83 M--TRTSSVVTLEVAKQ 97
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LGI + GGK E G +I ++ G PAD G L GD ++ NG ++R ++ I
Sbjct: 23 LGISITGGK--EHGVP-ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTI 79
Query: 175 IAESRQEPQVELI 187
+++ R E + E++
Sbjct: 80 LSQQRGEIEFEVV 92
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
+G+ ++ K G ++ V KG AD++G L AGDQ++ +GRS+ G S + ++
Sbjct: 17 MGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAEL 76
Query: 175 IAESRQEPQVELIVSRR 191
+ +R V L V+++
Sbjct: 77 M--TRTSSVVTLEVAKQ 91
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 113 STLGIKVIGG--KLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
S LG ++GG + G + ++K+ A L+G L GD+++ NG+ ++ QD
Sbjct: 28 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQD 87
Query: 171 VEDIIAESRQEPQVELIVSRRIQPKYAP 198
D+ + V L V R+Q + P
Sbjct: 88 AVDLFRNAGYA--VSLRVQHRLQVQNGP 113
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
+G+ ++ K G ++ V KG AD++G L AGDQ++ +GRS+ G S + ++
Sbjct: 17 MGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAEL 76
Query: 175 IAESRQEPQVELIVSRR 191
+ +R V L V+++
Sbjct: 77 M--TRTSSVVTLEVAKQ 91
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMR 164
S+ LG ++GG EDG G I + G PADL G L GD++I N +R
Sbjct: 16 GSTGLGFNIVGG---EDG-EGIFISFILAGGPADLSGELRKGDRIISVNSVDLR 65
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 37.4 bits (85), Expect = 0.011, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMR 164
S+ LG ++GG EDG G I + G PADL G L GD++I N +R
Sbjct: 13 GSTGLGFNIVGG---EDG-EGIFISFILAGGPADLSGELRKGDRIISVNSVDLR 62
>pdb|1UFX|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Kiaa1526 Protein
Length = 103
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 107 RYPSASSTLGIKVIGGKLLEDGTRGAI--IEKVKKGSPADLEGHLLAGDQVIEWNGRSMR 164
R +++TLGI + GG TR + I +++G A G L G ++E NG ++R
Sbjct: 11 RVKKSAATLGIAIEGGA----NTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLR 66
Query: 165 GKSFQDVEDIIAES 178
GK ++ IIAE+
Sbjct: 67 GKEHREAARIIAEA 80
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 13/65 (20%)
Query: 126 EDGTRGA------------IIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED 173
E+G RG +++VK+G PA E L GD++I+ NG S+ GK++ V
Sbjct: 45 ENGNRGGKQRNRLEPMDTIFVKQVKEGGPA-FEAGLCTGDRIIKVNGESVIGKTYSQVIA 103
Query: 174 IIAES 178
+I S
Sbjct: 104 LIQNS 108
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 146 EGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191
+G L AGD++IE NG + GKS ++V ++ ++ E V L+V R+
Sbjct: 55 DGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQ 100
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 146 EGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191
+G L AGD++IE NG + GKS ++V ++ ++ E V L+V R+
Sbjct: 49 DGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQ 94
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 146 EGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191
+G L AGD++IE NG + GKS ++V ++ ++ E V L+V R+
Sbjct: 74 DGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
S LG V+G + G G ++++++GS A +G L DQ++ NG+++ ++
Sbjct: 31 SGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQAL-DQTITHQ 89
Query: 172 EDIIAESRQEPQVELIVSRRIQPKY 196
+ I + + V+L+++R P+Y
Sbjct: 90 QAISILQKAKDTVQLVIARGSLPQY 114
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 132 AIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190
II + G PA+ G L GDQ++ NG S+ G + II + + +V+L + R
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVR 89
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human
Cdna, Kiaa1095
Length = 107
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 112 SSTLGIKVIGGKLLEDG-----TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSM-RG 165
S +LG +IGG+ D + G + K+ PA EG L D++IE NGR + R
Sbjct: 18 SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRA 77
Query: 166 KSFQDVEDIIAESRQEPQVELIVSRRIQP 194
Q VE ++ +EP V ++ R P
Sbjct: 78 THDQAVEAF--KTAKEPIVVQVLRRTSGP 104
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 107 RYPSASSTLGIKVIGGK----LLEDG--TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNG 160
R PS S LGI ++GG+ L +G RG I+ V + SPA G L GD+++E +G
Sbjct: 12 REPSKS--LGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDG 69
Query: 161 RSMRGKSF-QDVEDI 174
+R S Q VE I
Sbjct: 70 MDLRDASHEQAVEAI 84
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 112 SSTLGIKVIGGK----LLEDG--TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRG 165
S +LGI ++GG+ L +G RG I+ V + SPA G L GD+++E +G +R
Sbjct: 35 SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRD 94
Query: 166 KSF-QDVEDI 174
S Q VE I
Sbjct: 95 ASHEQAVEAI 104
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 36.2 bits (82), Expect = 0.027, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 133 IIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190
II + G PA+ G L GDQ++ NG S+ G + II + + +V+L + R
Sbjct: 32 IIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVR 89
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 35.8 bits (81), Expect = 0.030, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 126 EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
E G G I V+ GSPA+ G LLAGD+++E NG ++ ++ Q V
Sbjct: 22 EKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQV 66
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 35.8 bits (81), Expect = 0.030, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 126 EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
E G G I V+ GSPA+ G LLAGD+++E NG ++ ++ Q V
Sbjct: 23 EKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQV 67
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LG+K++GG +G I +V G +G L GDQ++ N SM G SF++ + I
Sbjct: 27 LGLKILGGINRNEGPL-VYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSI 85
Query: 175 I--AESRQEPQVELIVSR 190
I A+ R E E+ R
Sbjct: 86 ITRAKLRSESPWEIAFIR 103
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 35.4 bits (80), Expect = 0.038, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 126 EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
E G G I V+ GSPA+ G LLAGD+++E NG ++ ++ Q V
Sbjct: 23 EKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQV 67
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 35.4 bits (80), Expect = 0.039, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 126 EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
E G G I V+ GSPA+ G LLAGD+++E NG ++ ++ Q V
Sbjct: 23 EKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQV 67
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid Beta
A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 132 AIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
II + G PA+ G L GDQ++ NG S+ G + II + + +V+L
Sbjct: 35 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKL 89
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 113 STLGIKVIGG--KLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
S LG ++GG + G + ++K+ A L+G L GD+++ NG+ ++ QD
Sbjct: 20 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQD 79
Query: 171 VEDII 175
D+
Sbjct: 80 AVDLF 84
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LG+ V+ +L I+ + G PA G L GDQ++ NG S+ G + I
Sbjct: 205 LGVVVVESSILPT----VILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGI 260
Query: 175 IAESRQEPQVEL-IVS 189
I + + QV+L IVS
Sbjct: 261 IKGLKNQTQVKLNIVS 276
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 113 STLGIKVIGG--KLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
S LG ++GG + G + ++K+ A L+G L GD+++ NG+ ++ QD
Sbjct: 18 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQD 77
Query: 171 VEDII 175
D+
Sbjct: 78 AVDLF 82
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
Length = 91
Score = 34.7 bits (78), Expect = 0.062, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAES 178
G G+ I++V+KG PADL G L D +IE NG ++ + ++ V D I S
Sbjct: 25 GLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSS 74
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 26/75 (34%)
Query: 241 HPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNG 300
HPIT G IQ++ D G L ++ ++ A +LVPR N
Sbjct: 3 HPIT-----GEIQLQINYDLGNL---------------------IIHILQARNLVPRDNN 36
Query: 301 QPRCPYAKIYLLPDR 315
P+ K+YLLP R
Sbjct: 37 GYSDPFVKVYLLPGR 51
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE 172
S G +++GG E G I + GS AD +G L GD+++ +G + GK+ + V
Sbjct: 20 SGFGFRILGGD--EPGQPILIGAVIAMGS-ADRDGRLHPGDELVYVDGIPVAGKTHRYVI 76
Query: 173 DIIAESRQEPQVELIVSRRI 192
D++ + + QV L V R++
Sbjct: 77 DLMHHAARNGQVNLTVRRKV 96
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 107 RYPSASSTLGIKVIGG----KLLEDG--TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNG 160
R P+ S LGI ++GG K L++G +G I++V + SPA L GD+++E +G
Sbjct: 23 REPNVS--LGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSG 80
Query: 161 RSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPKYAP 198
++ S + + I ++ P V ++ S P+ P
Sbjct: 81 VDLQNASHSEAVEAI-KNAGNPVVFIVQSLSSTPRVIP 117
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
Length = 87
Score = 34.7 bits (78), Expect = 0.073, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAES 178
G G+ I++V+KG PADL G L D +IE NG ++ + ++ V D I S
Sbjct: 25 GLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSS 74
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 34.3 bits (77), Expect = 0.081, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LG+ ++G + G + + KG AD +G L+ GDQ++ NG +R + + V +
Sbjct: 18 LGLSIVGKR----NDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAAL 73
Query: 175 I 175
+
Sbjct: 74 L 74
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
G G+ I++V+KG PADL G L D +IE NG ++ + ++ V D I S + V L+
Sbjct: 29 GLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGK--NVTLL 85
Query: 188 VSRR 191
V +
Sbjct: 86 VCGK 89
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 87 KPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADL- 145
KP+ +G +++L + P + G V GG D I+ +V G+PADL
Sbjct: 6 KPTPNGGIPHDNLVLIR---MKPDENGRFGFNVKGGY---DQKMPVIVSRVAPGTPADLC 59
Query: 146 EGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191
L GDQV+ NGR + + V I S + EL++ R
Sbjct: 60 VPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVR 105
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED-IIAESRQ 180
G I ++ G A G L D+V+E NG + GKS V D +IA SR
Sbjct: 66 GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRN 116
>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human
Nherf-1 (Slc9a3r1)
Length = 92
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190
G I V SPA+ G L A D+++E NG M GK DV I E ++ L+V R
Sbjct: 29 GQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKL-LVVDR 86
Query: 191 RIQ 193
+
Sbjct: 87 ETE 89
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 113 STLGIKVIGGKLLE-DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+T G + GG + + +R +I V+ G PAD EG + GD+++ +G + G + +
Sbjct: 14 NTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEA 73
Query: 172 EDIIAESRQEPQV 184
I+ + QE +
Sbjct: 74 MSILKQCGQEAAL 86
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 109 PSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADL-EGHLLAGDQVIEWNGRSMRGKS 167
P + G V GG D I+ +V G+PADL L GDQV+ NGR + +
Sbjct: 23 PDENGRFGFNVKGGY---DQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT 79
Query: 168 FQDVEDIIAESRQEPQVELIVSRRIQPKY 196
V I S + EL++ R Y
Sbjct: 80 HDQVVLFIKASCERHSGELMLLVRPNAVY 108
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
S LGI ++ G E G G + KV GS A G L GDQ++E+NG ++R + Q
Sbjct: 28 GSEPLGISIVSG---EKG--GIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQ 81
Query: 171 VEDIIAE 177
II +
Sbjct: 82 ARLIIGQ 88
>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1
(150- 270)
Length = 128
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190
G I V SPA+ G L A D+++E NG M GK DV I E ++ L+V R
Sbjct: 34 GQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKL-LVVDR 91
>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1
Length = 98
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190
G I V SPA+ G L A D+++E NG M GK DV I E ++ L+V R
Sbjct: 34 GQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKL-LVVDR 91
>pdb|2YT7|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3
Length = 101
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 132 AIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIV 188
A+I + G PA+ G L GD++ NG S+ G + + E++ + V L +
Sbjct: 39 AVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSI 95
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAES 178
G I ++ G A+ G L D+VIE NG + GK+ V D++ +
Sbjct: 67 GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVAN 114
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAES 178
G I ++ G A+ G L D+VIE NG + GK+ V D++ +
Sbjct: 67 GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVAN 114
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAES 178
G I ++ G A+ G L D+VIE NG + GK+ V D++ +
Sbjct: 39 GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVAN 86
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 32.0 bits (71), Expect = 0.41, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 109 PSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADL-EGHLLAGDQVIEWNGRSMRGKS 167
P + G V GG D I+ +V G+PADL L GDQV+ NGR + +
Sbjct: 12 PDENGRFGFNVKGGY---DQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT 68
Query: 168 FQDVEDIIAESRQEPQVELIVSRR 191
V I S + EL++ R
Sbjct: 69 HDQVVLFIKASCERHSGELMLLVR 92
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 32.0 bits (71), Expect = 0.42, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 115 LGIKV---IGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
LGI + IG K LE G ++ + K S + +G + GDQ+I +G +++G + Q
Sbjct: 17 LGITIAGYIGDKKLEPS--GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQA 74
Query: 172 EDIIAESRQEPQVELIVSRR 191
+++ + Q V L + RR
Sbjct: 75 VEVLRHTGQ--TVLLTLMRR 92
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAES 178
G I ++ G A+ G L D+VIE NG + GK+ V D++ +
Sbjct: 41 GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVAN 88
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190
G I V SPA+ G L A D+++E NG M GK DV I E ++ L+V R
Sbjct: 34 GQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKL-LVVDR 91
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQE 181
+R +I V+ G PAD EG + GD+++ +G + G + + I+ + QE
Sbjct: 134 SRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQE 186
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 31.6 bits (70), Expect = 0.55, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE 177
G ++ V +GSPAD G L AGDQ++ N +++ S +DV +I +
Sbjct: 21 GQAPCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGK 69
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 280 GTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
G+ +LVV ++ A L + + PY KIYLLPDR
Sbjct: 18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDR 53
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 280 GTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
G+ +LVV ++ A L + + PY KIYLLPDR
Sbjct: 19 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDR 54
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 23/108 (21%)
Query: 115 LGIKVIGGKLLEDGTRGAI-IEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED 173
LG+ + G K D +R +I + + PA +G + GD+++E N + + G+S Q+
Sbjct: 38 LGLSLAGNK---DRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASA 94
Query: 174 IIAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRDKPSVLVTSPGS 221
II K AP+ K V+ R D + + + P S
Sbjct: 95 II-------------------KTAPSKVKLVFIRNEDAVNQMASGPSS 123
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LGI + GG+ + +I K+ KG AD L GD ++ NG + + +
Sbjct: 91 LGISIKGGR---ENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQA 147
Query: 175 IAESRQEPQVELIVSRRIQPKY 196
+ ++ +E +E+ + + P +
Sbjct: 148 LKKTGKEVVLEVKYMKEVSPYF 169
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LG ++GG G ++ V A +G L GDQ+I NG+S+ G + ++ I
Sbjct: 38 LGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAI 97
Query: 175 IAESRQEPQVELIV 188
+ R + V L+V
Sbjct: 98 L--KRTKGTVTLMV 109
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
G +++GG E G I V G+ AD +G L +GD++I +G + GKS Q V +
Sbjct: 15 FGFRILGGN--EPGEPIYIGHIVPLGA-ADTDGRLRSGDELISVDGTPVIGKSHQLVVQL 71
Query: 175 IAESRQEPQVELIV 188
+ ++ ++ V L V
Sbjct: 72 MQQAAKQGHVNLTV 85
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 133 IIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAES 178
+I K+++ SPA G L AGD + NG S G +++ V D+I S
Sbjct: 51 LICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIRSS 95
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 134 IEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAES------RQEPQVEL 186
I ++ GSPAD L GD+++ NG+S+ D+ +I ++ R PQ EL
Sbjct: 47 IGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEEL 105
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JRG|B Chain B, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JTA|A Chain A, Crystal Structure Of Pectate Lyase A (C2 Form)
Length = 361
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 109 PSASSTLGI----KVIGGKLLEDGTRGA---IIEKVKKGSPADLEGHLLAGD-QVIEWNG 160
P+ ++ +G+ K I G L+ DGT G II V +P D+E H GD EW+
Sbjct: 86 PANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDA 145
Query: 161 RSM 163
++
Sbjct: 146 MNI 148
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1OOC|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A
pdb|1PE9|B Chain B, Mutations In The T1.5 Loop Of Pectate Lyase A
Length = 361
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 109 PSASSTLGI----KVIGGKLLEDGTRGA---IIEKVKKGSPADLEGHLLAGD-QVIEWNG 160
P+ ++ +G+ K I G L+ DGT G II V +P D+E H GD EW+
Sbjct: 86 PANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDA 145
Query: 161 RSM 163
++
Sbjct: 146 MNI 148
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 25/97 (25%)
Query: 72 LDERIKKFLAHPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDG--- 128
L++R++K P+ + DG LGI +IG + D
Sbjct: 72 LEKRVEKLELFPVELEKDEDG----------------------LGISIIGMGVGADAGLE 109
Query: 129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRG 165
G ++ V +G A +G + DQ++E +G S+ G
Sbjct: 110 KLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVG 146
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 133 IIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAES 178
++ V+ GSPA E L AGD + NG S+ G DV +++ +S
Sbjct: 37 VVWSVEDGSPAQ-EAGLRAGDLITHINGESVLGLVHMDVVELLLKS 81
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF-QDV 171
+ G+ + GG+ + T A+ +K G PA G L GD V+ NG S +G + Q V
Sbjct: 22 AGFGLTLGGGRDVAGDTPLAVRGLLKDG-PAQRCGRLEVGDLVLHINGESTQGLTHAQAV 80
Query: 172 EDIIAESRQEPQVELIVSR 190
E I A PQ+ L++ R
Sbjct: 81 ERIRAGG---PQLHLVIRR 96
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVS 189
+GA++ +V SPA+L G L AGD + + N + + V+ I+ R V++IV
Sbjct: 282 QGALVSQVNPNSPAELAG-LKAGDIITQINDTKITQAT--QVKTTISLLRVGSTVKIIVE 338
Query: 190 RRIQPKYAPTLSKDV 204
R +P + D+
Sbjct: 339 RDNKPLTLSAVVTDI 353
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 283 RLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
+L+V ++ AA L G PY K++LLPD+
Sbjct: 18 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK 50
>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function,
Nmr, 20 Structures
Length = 130
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
S+ LG + GGK G + I ++ KG+ ++ + GD++++ G +M+G + +
Sbjct: 39 SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEA 98
Query: 172 EDIIAESRQEPQVELIVSRRIQPK 195
+II P +I + +Q K
Sbjct: 99 WNIIKALPDGPVTIVIRRKSLQSK 122
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 115 LGIKVIGGKLLEDG---TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRG 165
LGI +IG + D G ++ V +G A +G + DQ++E +G S+ G
Sbjct: 17 LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVG 70
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 283 RLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
+L+V ++ AA L G PY K++LLPD+
Sbjct: 35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK 67
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 283 RLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
+L+V ++ AA L G PY K++LLPD+
Sbjct: 43 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK 75
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVS 189
+GA++ +V SPA+L G L AGD + + N + + V+ I+ R V++IV
Sbjct: 282 QGALVSQVNPNSPAELAG-LKAGDIITQINDTKITQAT--QVKTTISLLRVGSTVKIIVE 338
Query: 190 RRIQPKYAPTLSKDV 204
R +P + D+
Sbjct: 339 RDNKPLTLSAVVTDI 353
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 283 RLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
+L+V ++ AA L G PY K++LLPD+
Sbjct: 35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK 67
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz
Domain-Containing Protein 1
Length = 114
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 125 LEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNG 160
+E T G +I +++GSPA+ G LL GD+V+ NG
Sbjct: 33 IEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRING 67
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVS 189
+GA++ +V SPA+L G L AGD + + N + + V+ I+ R V++IV
Sbjct: 282 QGALVSQVNPNSPAELAG-LKAGDIITQINDTKITQAT--QVKTTISLLRVGSTVKIIVE 338
Query: 190 RRIQPKYAPTLSKDV 204
R +P + D+
Sbjct: 339 RDNKPLTLSAVVTDI 353
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVS 189
+GA++ +V SPA+L G L AGD + + N + + V+ I+ R V++IV
Sbjct: 282 QGALVSQVNPNSPAELAG-LKAGDIITQINDTKITQAT--QVKTTISLLRVGSTVKIIVE 338
Query: 190 RRIQPKYAPTLSKDV 204
R +P + D+
Sbjct: 339 RDNKPLTLSAVVTDI 353
>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FPM|B Chain B, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|A Chain A, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|B Chain B, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|3PZX|A Chain A, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3PZX|B Chain B, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3QB6|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3QB6|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3RBO|A Chain A, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3RBO|B Chain B, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3SIN|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3SIN|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3QUS|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
pdb|3QUS|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
Length = 557
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 9/42 (21%)
Query: 180 QEPQVELIVSRRIQPKYAPTLSKDVYERVRDKPS---VLVTS 218
QE +VEL KY +S DVY R++DKP +LVT+
Sbjct: 29 QEDEVEL------YGKYKAKISLDVYRRLKDKPDGKLILVTA 64
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
Length = 557
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 9/42 (21%)
Query: 180 QEPQVELIVSRRIQPKYAPTLSKDVYERVRDKPS---VLVTS 218
QE +VEL KY +S DVY R++DKP +LVT+
Sbjct: 29 QEDEVEL------YGKYKAKISLDVYRRLKDKPDGKLILVTA 64
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 283 RLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
+L+V ++ AA L G PY K++LLPD+
Sbjct: 20 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK 52
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 125 LEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNG 160
+E T G +I +++GSPA+ G LL GD+V+ NG
Sbjct: 22 IEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRING 56
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQE 181
G ++ V+ SPA L G L GDQV++ NG + G S ++ ++ E
Sbjct: 27 NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGE 77
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQE 181
G ++ V+ SPA L G L GDQV++ NG + G S ++ ++ E
Sbjct: 27 NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGE 77
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 125 LEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNG 160
+E T G +I +++GSPA+ G LL GD+V+ NG
Sbjct: 21 IEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRING 55
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 133 IIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192
+I ++ SPA+ G L GD+V+ NG +F++ ++ +S +V L + +
Sbjct: 39 LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDV 98
Query: 193 QPKYAPTLSKDVYERVRDKPSV-LVTSPGSPDIHSGRPGRPV 233
P+ S + ++ K SV L + SP S +PG P+
Sbjct: 99 AESVIPS-SGTFHVKLPKKHSVELGITISSP--SSRKPGDPL 137
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LGI + GG+ + +I K+ KG AD L GD ++ NG + + +
Sbjct: 14 LGISIKGGR---ENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQA 70
Query: 175 IAESRQEPQVEL 186
+ ++ +E +E+
Sbjct: 71 LKKTGKEVVLEV 82
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LGI + GG+ + +I K+ KG AD L GD ++ NG + + +
Sbjct: 14 LGISIKGGR---ENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQA 70
Query: 175 IAESRQEPQVEL 186
+ ++ +E +E+
Sbjct: 71 LKKTGKEVVLEV 82
>pdb|2XSR|A Chain A, Crystal Structure Of Wild Type Acinetobacter
Radioresistens Catechol 1,2 Dioxygenase
Length = 312
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 120 IGGKLLEDGTRGAIIEK-VKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
+G ++DG+ ++ + +G+ D EG+++ G +V W+ S+ SF D
Sbjct: 120 VGFARMDDGSESDKVDTLIIEGTVTDTEGNIIEGAKVEVWHANSLGNYSFFD 171
>pdb|2XSV|A Chain A, Crystal Structure Of Wild Type Acinetobacter
Radioresistens Catechol 1,2 Dioxygenase
Length = 312
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 120 IGGKLLEDGTRGAIIEK-VKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
+G ++DG+ ++ + +G+ D EG+++ G +V W+ S+ SF D
Sbjct: 120 VGFARMDDGSESDKVDTLIIEGTVTDTEGNIIEGAKVEVWHANSLGNYSFFD 171
>pdb|2XSU|A Chain A, Crystal Structure Of The A72g Mutant Of Acinetobacter
Radioresistens Catechol 1,2 Dioxygenase
Length = 312
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 120 IGGKLLEDGTRGAIIEK-VKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
+G ++DG+ ++ + +G+ D EG+++ G +V W+ S+ SF D
Sbjct: 120 VGFARMDDGSESDKVDTLIIEGTVTDTEGNIIEGAKVEVWHANSLGNYSFFD 171
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 132 AIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAES 178
+ +V + SPA L G L GD + NG ++ G +++ DII S
Sbjct: 39 TFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIKAS 84
>pdb|3KZD|A Chain A, Crystal Structure Of Free T-Cell Lymphoma Invasion And
Metas Pdz Domain
pdb|3KZE|A Chain A, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|B Chain B, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|C Chain C, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
Length = 94
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 126 EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVE 185
EDG R + VK+ A +G L AGD+++E N R+ + ++D ++ +P +
Sbjct: 31 EDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLS----QPSLG 85
Query: 186 LIV 188
L+V
Sbjct: 86 LLV 88
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 151 AGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRD 210
AG +VI+WNG + G ++A SR I R ++P P +RV++
Sbjct: 190 AGGKVIQWNGARVFG--------VLAMSRS------IGDRYLKPSIIPDPEVTAVKRVKE 235
Query: 211 KPSVLVTSPGSPDIHS 226
+++ S G D+ +
Sbjct: 236 DDCLILASDGVWDVMT 251
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 151 AGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRD 210
AG +VI+WNG + G ++A SR I R ++P P +RV++
Sbjct: 178 AGGKVIQWNGARVFG--------VLAMSRS------IGDRYLKPSIIPDPEVTAVKRVKE 223
Query: 211 KPSVLVTSPGSPDIHS 226
+++ S G D+ +
Sbjct: 224 DDCLILASDGVWDVMT 239
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 28.5 bits (62), Expect = 5.1, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LGI + GG+ + +I K+ KG AD L GD ++ NG + + +
Sbjct: 18 LGISIKGGR---ENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQA 74
Query: 175 IAESRQEPQVEL 186
+ ++ +E +E+
Sbjct: 75 LKKTGKEVVLEV 86
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
Length = 316
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 151 AGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRD 210
AG +VI+WNG + G ++A SR I R ++P P +RV++
Sbjct: 175 AGGKVIQWNGARVFG--------VLAMSRS------IGDRYLKPSIIPDPEVTAVKRVKE 220
Query: 211 KPSVLVTSPGSPDIHS 226
+++ S G D+ +
Sbjct: 221 DDCLILASDGVWDVMT 236
>pdb|3BTN|A Chain A, Crystal Structure Of Antizyme Inhibitor, An Ornithine
Decarboxylase Homologous Protein
pdb|3BTN|B Chain B, Crystal Structure Of Antizyme Inhibitor, An Ornithine
Decarboxylase Homologous Protein
Length = 448
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPA 143
G I+ + G Y S++ TL + +I K++E+ + +EK PA
Sbjct: 265 GIQIISEPGSYYVSSAFTLAVNIIAKKVVENDKFSSGVEKNGSDEPA 311
>pdb|3PS4|A Chain A, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|B Chain B, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|C Chain C, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|D Chain D, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
Length = 102
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 133 IIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAES 178
I+ V++G PA E L AGD + NG + G +V ++I +S
Sbjct: 40 IVWHVEEGGPAQ-EAGLCAGDLITHVNGEPVHGMVHPEVVELILKS 84
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 132 AIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAES 178
+ +V + SPA L G L GD + NG ++ G +++ DII S
Sbjct: 39 TFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIKAS 84
>pdb|3BPU|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Membrane
Associated Guanylate Kinase, C677s And C709s Double
Mutant
Length = 88
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 149 LLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191
L GD ++E N ++++ + V D++ ES + +V L+V R+
Sbjct: 43 LKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQ 85
>pdb|2YUB|A Chain A, Solution Structure Of The Pdz Domain From Mouse Lim Domain
Kinase
Length = 118
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 152 GDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQV 184
GD+++E NG +R ++VED I ++ Q Q+
Sbjct: 67 GDRILEINGTPVRTLRVEEVEDAIKQTSQTLQL 99
>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
pdb|2PNT|B Chain B, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
Length = 98
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 132 AIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVS 189
+ +V + SPA L G L GD + NG ++ G +++ DII S ++E + S
Sbjct: 39 TFVCRVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLYS 95
>pdb|1P1E|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 101
Score = 27.7 bits (60), Expect = 7.9, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 133 IIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
+I ++ SPA+ G L GD+V+ NG +F++ ++ +S +V L
Sbjct: 39 LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTL 92
>pdb|2D8I|A Chain A, Solution Structure Of The Pdz Domain Of T-Cell Lymphoma
Invasion And Metastasis 1 Varian
Length = 114
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 106 DRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRG 165
++ +A+ T G + + EDG R + VK+ A +G L AGD+++E N R+
Sbjct: 22 EKSDTAADTYGFSL--SSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADA 78
Query: 166 KSFQDVEDIIAESRQEPQVELIV 188
+ ++D ++ +P + L+V
Sbjct: 79 LNSSMLKDFLS----QPSLGLLV 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,396,759
Number of Sequences: 62578
Number of extensions: 479487
Number of successful extensions: 1330
Number of sequences better than 100.0: 165
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 1230
Number of HSP's gapped (non-prelim): 167
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)