Query psy4487
Match_columns 315
No_of_seqs 337 out of 1642
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 18:21:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00595 PDZ: PDZ domain (Also 99.5 9.6E-14 2.1E-18 106.9 9.6 80 99-189 2-81 (81)
2 KOG3550|consensus 99.5 6.8E-14 1.5E-18 121.3 8.5 76 112-192 100-175 (207)
3 KOG3571|consensus 99.3 2.4E-11 5.2E-16 121.5 12.0 152 37-195 182-343 (626)
4 KOG3209|consensus 99.2 2.1E-11 4.5E-16 125.7 9.2 88 98-195 652-739 (984)
5 KOG3551|consensus 99.2 1.6E-11 3.5E-16 119.6 7.6 85 97-192 86-170 (506)
6 KOG1892|consensus 99.2 4.7E-11 1E-15 125.9 11.2 90 95-194 933-1022(1629)
7 KOG3209|consensus 99.2 1.1E-10 2.3E-15 120.6 10.0 83 97-191 900-982 (984)
8 KOG3549|consensus 99.1 9.9E-11 2.2E-15 113.0 6.9 87 97-194 56-142 (505)
9 KOG3553|consensus 99.1 1.7E-10 3.7E-15 93.9 6.7 102 87-192 7-117 (124)
10 cd00992 PDZ_signaling PDZ doma 99.1 2.3E-09 5E-14 81.5 10.8 79 98-188 3-81 (82)
11 KOG3580|consensus 99.1 3.4E-10 7.4E-15 115.2 7.8 88 96-193 9-99 (1027)
12 cd00136 PDZ PDZ domain, also c 99.0 2.7E-09 5.8E-14 79.2 9.5 68 114-188 2-69 (70)
13 smart00228 PDZ Domain present 99.0 1.4E-08 3E-13 77.1 11.6 73 113-191 12-84 (85)
14 cd08392 C2A_SLP-3 C2 domain fi 98.9 3.3E-09 7.1E-14 89.4 6.7 47 250-315 2-49 (128)
15 cd08406 C2B_Synaptotagmin-12 C 98.9 3.5E-09 7.6E-14 90.4 6.8 46 250-314 2-47 (136)
16 cd08680 C2_Kibra C2 domain fou 98.9 4E-09 8.7E-14 88.7 6.7 46 251-315 2-47 (124)
17 cd08393 C2A_SLP-1_2 C2 domain 98.8 6.8E-09 1.5E-13 86.6 7.1 48 249-315 1-49 (125)
18 cd08407 C2B_Synaptotagmin-13 C 98.8 1.6E-08 3.5E-13 86.7 6.8 46 250-314 2-49 (138)
19 cd08381 C2B_PI3K_class_II C2 d 98.8 1.8E-08 3.9E-13 83.9 6.8 44 249-314 1-44 (122)
20 cd04028 C2B_RIM1alpha C2 domai 98.7 2.4E-08 5.2E-13 86.5 7.3 48 247-315 15-63 (146)
21 PF13180 PDZ_2: PDZ domain; PD 98.7 9.7E-08 2.1E-12 73.8 9.4 73 114-193 2-74 (82)
22 cd08389 C2A_Synaptotagmin-14_1 98.7 3E-08 6.4E-13 82.8 6.8 48 249-315 2-49 (124)
23 cd04029 C2A_SLP-4_5 C2 domain 98.7 3.8E-08 8.2E-13 82.3 7.0 48 249-315 1-49 (125)
24 cd08408 C2B_Synaptotagmin-14_1 98.7 3.2E-08 7E-13 84.4 6.4 46 250-314 2-47 (138)
25 KOG1028|consensus 98.7 2.9E-08 6.2E-13 99.4 6.9 52 245-315 149-200 (421)
26 cd08677 C2A_Synaptotagmin-13 C 98.7 4.4E-08 9.6E-13 82.2 6.6 43 250-314 1-43 (118)
27 KOG3580|consensus 98.6 6.2E-08 1.3E-12 99.1 8.0 75 112-192 416-490 (1027)
28 KOG3651|consensus 98.6 1E-07 2.2E-12 91.0 8.8 84 98-192 7-90 (429)
29 cd08685 C2_RGS-like C2 domain 98.6 6.9E-08 1.5E-12 80.2 6.6 43 250-314 1-43 (119)
30 cd00988 PDZ_CTP_protease PDZ d 98.6 2.1E-07 4.6E-12 71.5 8.7 71 113-191 2-72 (85)
31 cd08385 C2A_Synaptotagmin-1-5- 98.6 9.6E-08 2.1E-12 78.7 7.1 48 249-315 2-49 (124)
32 cd08388 C2A_Synaptotagmin-4-11 98.6 9.1E-08 2E-12 80.3 7.0 48 249-315 2-50 (128)
33 cd08521 C2A_SLP C2 domain firs 98.6 1.2E-07 2.7E-12 77.6 7.1 46 250-314 1-47 (123)
34 cd08387 C2A_Synaptotagmin-8 C2 98.6 1.5E-07 3.2E-12 77.7 7.3 47 249-314 2-48 (124)
35 cd04030 C2C_KIAA1228 C2 domain 98.6 1.6E-07 3.4E-12 77.5 6.9 47 249-314 2-48 (127)
36 cd08404 C2B_Synaptotagmin-4 C2 98.6 1.6E-07 3.5E-12 79.0 6.8 47 249-314 1-47 (136)
37 cd04031 C2A_RIM1alpha C2 domai 98.5 2.2E-07 4.7E-12 76.3 7.2 47 249-314 2-48 (125)
38 cd08409 C2B_Synaptotagmin-15 C 98.5 1.7E-07 3.7E-12 79.6 6.7 46 249-314 1-46 (137)
39 cd08390 C2A_Synaptotagmin-15-1 98.5 2.5E-07 5.4E-12 75.9 7.1 46 250-314 1-47 (123)
40 KOG3606|consensus 98.5 2.2E-07 4.8E-12 87.6 7.2 76 111-188 169-250 (358)
41 cd08384 C2B_Rabphilin_Doc2 C2 98.4 5.6E-07 1.2E-11 75.2 6.9 45 251-314 1-45 (133)
42 cd08692 C2B_Tac2-N C2 domain s 98.4 4.9E-07 1.1E-11 77.6 6.4 45 251-314 2-46 (135)
43 cd08386 C2A_Synaptotagmin-7 C2 98.4 7.7E-07 1.7E-11 73.3 7.2 47 249-314 2-48 (125)
44 cd08410 C2B_Synaptotagmin-17 C 98.4 7.1E-07 1.5E-11 75.4 6.9 46 250-314 1-46 (135)
45 cd08405 C2B_Synaptotagmin-7 C2 98.4 7.9E-07 1.7E-11 74.7 6.7 47 249-314 1-47 (136)
46 cd04035 C2A_Rabphilin_Doc2 C2 98.4 9.4E-07 2E-11 72.8 7.0 47 249-314 1-47 (123)
47 cd00276 C2B_Synaptotagmin C2 d 98.4 9E-07 1.9E-11 73.3 6.7 46 250-314 1-46 (134)
48 cd04020 C2B_SLP_1-2-3-4 C2 dom 98.4 1E-06 2.2E-11 77.2 7.1 59 249-314 1-59 (162)
49 cd00991 PDZ_archaeal_metallopr 98.4 2.5E-06 5.5E-11 65.6 8.3 60 130-192 10-69 (79)
50 KOG3552|consensus 98.3 5.9E-07 1.3E-11 95.5 6.0 75 98-191 58-132 (1298)
51 cd08403 C2B_Synaptotagmin-3-5- 98.3 1.3E-06 2.8E-11 73.3 6.6 46 250-314 1-46 (134)
52 cd08402 C2B_Synaptotagmin-1 C2 98.3 2.1E-06 4.5E-11 72.1 6.8 47 249-314 1-47 (136)
53 cd00986 PDZ_LON_protease PDZ d 98.2 6.5E-06 1.4E-10 62.9 8.4 59 130-192 8-66 (79)
54 cd04009 C2B_Munc13-like C2 dom 98.2 3E-06 6.5E-11 71.2 7.1 47 249-314 2-48 (133)
55 PLN00049 carboxyl-terminal pro 98.2 7.3E-06 1.6E-10 81.3 9.8 79 112-192 84-162 (389)
56 KOG3542|consensus 98.2 2.2E-06 4.9E-11 88.9 6.0 86 95-192 535-620 (1283)
57 cd00989 PDZ_metalloprotease PD 98.2 1E-05 2.2E-10 61.1 8.2 59 130-192 12-70 (79)
58 cd00987 PDZ_serine_protease PD 98.1 1.2E-05 2.6E-10 62.0 8.2 60 130-192 24-83 (90)
59 cd00990 PDZ_glycyl_aminopeptid 98.1 1.1E-05 2.3E-10 61.3 6.8 57 130-192 12-68 (80)
60 KOG3605|consensus 98.1 4.4E-06 9.5E-11 86.4 5.5 91 94-192 644-735 (829)
61 COG0793 Prc Periplasmic protea 98.0 1.5E-05 3.3E-10 79.6 8.4 74 112-192 99-172 (406)
62 TIGR00225 prc C-terminal pepti 98.0 2.1E-05 4.6E-10 76.1 8.2 72 113-192 51-122 (334)
63 KOG0696|consensus 98.0 4.4E-06 9.5E-11 83.5 3.0 36 280-315 178-213 (683)
64 KOG0609|consensus 97.9 4.3E-05 9.3E-10 77.9 9.1 85 94-191 121-205 (542)
65 KOG1028|consensus 97.8 3.6E-05 7.8E-10 77.3 6.5 47 250-315 285-331 (421)
66 PRK11186 carboxy-terminal prot 97.8 5.7E-05 1.2E-09 79.8 8.0 72 113-191 244-320 (667)
67 cd04026 C2_PKC_alpha_gamma C2 97.7 8.1E-05 1.8E-09 61.9 6.7 44 249-313 1-44 (131)
68 TIGR02037 degP_htrA_DO peripla 97.7 0.00013 2.8E-09 73.0 8.3 61 130-193 362-422 (428)
69 TIGR01713 typeII_sec_gspC gene 97.7 0.00014 3E-09 68.7 8.0 61 130-193 191-251 (259)
70 TIGR02037 degP_htrA_DO peripla 97.7 0.00014 3.1E-09 72.6 8.2 61 129-192 256-316 (428)
71 KOG0905|consensus 97.6 8.3E-05 1.8E-09 81.3 6.0 47 247-314 1510-1556(1639)
72 PRK10139 serine endoprotease; 97.6 0.00022 4.8E-09 72.3 8.1 59 130-193 390-448 (455)
73 TIGR02038 protease_degS peripl 97.6 0.00023 5E-09 69.7 7.9 60 130-192 278-337 (351)
74 PRK10139 serine endoprotease; 97.6 0.00027 5.9E-09 71.6 8.6 61 129-192 289-349 (455)
75 TIGR00054 RIP metalloprotease 97.6 0.00024 5.3E-09 71.2 8.1 60 130-193 203-262 (420)
76 PRK10942 serine endoprotease; 97.5 0.00028 6.2E-09 71.8 8.0 59 130-193 408-466 (473)
77 PRK10898 serine endoprotease; 97.5 0.00034 7.5E-09 68.6 8.3 60 130-192 279-338 (353)
78 PRK10942 serine endoprotease; 97.5 0.00037 8E-09 71.0 8.6 62 129-193 310-371 (473)
79 PRK10779 zinc metallopeptidase 97.4 0.00059 1.3E-08 68.9 8.6 60 130-193 221-280 (449)
80 PRK10779 zinc metallopeptidase 97.3 0.00049 1.1E-08 69.5 6.7 60 131-193 127-186 (449)
81 KOG3938|consensus 97.3 0.00046 1E-08 65.3 5.7 72 112-188 136-207 (334)
82 KOG3605|consensus 97.1 0.00048 1.1E-08 71.7 4.1 62 112-186 748-809 (829)
83 PF04495 GRASP55_65: GRASP55/6 96.9 0.0026 5.6E-08 54.8 6.5 81 110-194 23-104 (138)
84 TIGR00054 RIP metalloprotease 96.8 0.0028 6E-08 63.6 6.7 58 130-192 128-185 (420)
85 cd08676 C2A_Munc13-like C2 dom 96.7 0.0025 5.5E-08 55.6 4.7 37 278-314 24-60 (153)
86 TIGR03279 cyano_FeS_chp putati 96.6 0.0038 8.3E-08 63.0 6.0 49 134-189 2-50 (433)
87 KOG1013|consensus 96.5 0.0027 5.8E-08 61.8 4.3 49 247-314 217-265 (362)
88 TIGR02860 spore_IV_B stage IV 96.5 0.012 2.6E-07 59.0 8.9 71 111-193 94-172 (402)
89 cd08375 C2_Intersectin C2 doma 96.1 0.0094 2E-07 50.6 4.8 32 281-312 14-45 (136)
90 KOG0606|consensus 96.1 0.018 3.9E-07 63.5 8.0 83 98-192 629-717 (1205)
91 COG3480 SdrC Predicted secrete 96.0 0.028 6E-07 54.7 8.2 62 130-195 130-191 (342)
92 COG0265 DegQ Trypsin-like seri 96.0 0.028 6.1E-07 54.5 8.2 60 129-191 269-328 (347)
93 KOG3129|consensus 95.8 0.025 5.5E-07 52.1 6.7 65 129-195 138-203 (231)
94 PRK09681 putative type II secr 95.6 0.032 6.9E-07 53.4 6.9 56 136-193 210-267 (276)
95 PF14685 Tricorn_PDZ: Tricorn 95.5 0.025 5.4E-07 45.3 4.9 61 130-193 12-81 (88)
96 KOG1738|consensus 95.3 0.023 5.1E-07 59.3 5.0 76 110-192 210-286 (638)
97 PF00168 C2: C2 domain; Inter 95.2 0.025 5.4E-07 41.9 3.6 30 284-313 1-30 (85)
98 cd04032 C2_Perforin C2 domain 94.7 0.046 1E-06 46.2 4.6 31 281-312 27-57 (127)
99 KOG1328|consensus 94.2 0.038 8.3E-07 58.8 3.4 41 274-314 939-979 (1103)
100 KOG1421|consensus 93.5 0.16 3.4E-06 54.0 6.4 79 110-194 279-362 (955)
101 KOG3532|consensus 93.5 0.18 3.9E-06 53.6 6.6 61 127-192 395-455 (1051)
102 KOG1320|consensus 93.3 0.24 5.1E-06 50.8 7.2 62 130-194 398-459 (473)
103 KOG1013|consensus 92.8 0.037 8E-07 54.1 0.5 49 247-314 77-125 (362)
104 COG3975 Predicted protease wit 92.7 0.057 1.2E-06 55.7 1.7 43 112-161 450-492 (558)
105 KOG4407|consensus 92.1 0.15 3.2E-06 57.4 4.1 55 131-188 144-198 (1973)
106 KOG2060|consensus 91.2 0.2 4.4E-06 49.8 3.6 45 249-314 257-302 (405)
107 KOG1945|consensus 90.5 0.21 4.6E-06 49.2 3.0 72 110-181 107-181 (377)
108 KOG4371|consensus 90.1 0.36 7.7E-06 53.4 4.5 84 95-191 1246-1329(1332)
109 COG3031 PulC Type II secretory 89.3 0.95 2.1E-05 42.8 6.1 63 113-193 205-267 (275)
110 PF12812 PDZ_1: PDZ-like domai 86.8 2.4 5.1E-05 33.0 6.1 47 131-180 31-77 (78)
111 COG0750 Predicted membrane-ass 84.2 3.5 7.6E-05 40.0 7.3 56 132-190 131-188 (375)
112 KOG3834|consensus 73.5 5.1 0.00011 40.8 4.7 63 130-195 15-77 (462)
113 KOG4407|consensus 72.8 3.1 6.6E-05 47.5 3.2 46 130-177 96-141 (1973)
114 COG5038 Ca2+-dependent lipid-b 63.7 7.8 0.00017 43.8 4.0 32 280-311 1038-1069(1227)
115 KOG0792|consensus 60.0 4.8 0.0001 45.0 1.6 69 112-180 715-799 (1144)
116 KOG4371|consensus 56.4 8.9 0.00019 43.0 2.9 73 113-194 1158-1230(1332)
117 KOG1326|consensus 56.4 11 0.00024 42.1 3.5 31 281-311 612-642 (1105)
118 KOG1703|consensus 55.7 5.8 0.00013 40.7 1.3 76 114-196 9-84 (479)
119 KOG1011|consensus 48.0 19 0.00041 38.9 3.6 29 282-310 295-323 (1283)
120 KOG1421|consensus 45.0 46 0.001 36.2 5.8 52 127-182 859-910 (955)
121 KOG3834|consensus 42.9 1.2E+02 0.0026 31.2 8.2 73 113-189 92-165 (462)
122 PLN03200 cellulose synthase-in 40.1 28 0.00061 42.1 3.8 30 281-312 1979-2008(2102)
123 PTZ00173 60S ribosomal protein 38.8 61 0.0013 30.2 5.0 46 147-195 127-174 (213)
124 KOG2921|consensus 36.1 64 0.0014 32.9 5.0 46 130-177 220-265 (484)
125 PRK13810 orotate phosphoribosy 34.6 72 0.0016 28.7 4.8 46 146-191 116-162 (187)
126 PF11874 DUF3394: Domain of un 29.5 83 0.0018 28.6 4.3 27 131-158 123-149 (183)
127 COG0461 PyrE Orotate phosphori 22.8 1.7E+02 0.0036 27.0 5.0 46 146-191 106-152 (201)
128 TIGR01744 XPRTase xanthine pho 21.3 1.5E+02 0.0032 26.7 4.4 43 149-191 114-157 (191)
129 PRK05500 bifunctional orotidin 20.2 1.6E+02 0.0035 30.6 4.8 49 144-192 385-434 (477)
No 1
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.51 E-value=9.6e-14 Score=106.91 Aligned_cols=80 Identities=36% Similarity=0.636 Sum_probs=71.0
Q ss_pred EEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhc
Q psy4487 99 MILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAES 178 (315)
Q Consensus 99 v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s 178 (315)
++|.|.. ..+|||.+.++.+.. ..++||..|.++|+|+++| |++||+|++|||+++.++++++++.+|+.+
T Consensus 2 v~l~k~~------~~~lG~~l~~~~~~~--~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~ 72 (81)
T PF00595_consen 2 VTLEKSG------NGPLGFTLRGGSDND--EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSA 72 (81)
T ss_dssp EEEEEST------TSBSSEEEEEESTSS--SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHS
T ss_pred EEEEeCC------CCCcCEEEEecCCCC--cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCC
Confidence 5666653 579999999988643 4699999999999999999 999999999999999999999999999999
Q ss_pred CCCCcEEEEEE
Q psy4487 179 RQEPQVELIVS 189 (315)
Q Consensus 179 ~~~~~V~LvV~ 189 (315)
... |+|+|+
T Consensus 73 ~~~--v~L~V~ 81 (81)
T PF00595_consen 73 SNP--VTLTVQ 81 (81)
T ss_dssp TSE--EEEEEE
T ss_pred CCc--EEEEEC
Confidence 875 999875
No 2
>KOG3550|consensus
Probab=99.50 E-value=6.8e-14 Score=121.26 Aligned_cols=76 Identities=29% Similarity=0.460 Sum_probs=70.8
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~ 191 (315)
..||||.|.||++. ..+|||++|+|||.|++-|.|+-||++|+|||+++++--|+.|+++|+.+.+. |.|+|+..
T Consensus 100 deglgfnvmggkeq---nspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gs--vklvvryt 174 (207)
T KOG3550|consen 100 DEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGS--VKLVVRYT 174 (207)
T ss_pred ccccceeeccCccc---CCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCc--EEEEEecC
Confidence 47999999999986 46999999999999999999999999999999999999999999999999988 99998764
Q ss_pred C
Q psy4487 192 I 192 (315)
Q Consensus 192 ~ 192 (315)
.
T Consensus 175 p 175 (207)
T KOG3550|consen 175 P 175 (207)
T ss_pred h
Confidence 3
No 3
>KOG3571|consensus
Probab=99.28 E-value=2.4e-11 Score=121.48 Aligned_cols=152 Identities=19% Similarity=0.260 Sum_probs=101.9
Q ss_pred cccccccccccccCCCC--CCCccCC-CccCCCchhhhhHHhhhcc----CCCCCCcCCCCCCce--eEEEEEEeccCCC
Q psy4487 37 ARSRDEELRYYRGELEG--STGNEGS-GSIGGKEKQAILDERIKKF----LAHPLSWKPSADGKY--MIGHMILRKSGDR 107 (315)
Q Consensus 37 ~~~~~e~~~~~~~~~e~--~~~~~~~-~~~~g~~~~~~~~~~~~~~----~~~P~~wq~s~~g~~--~i~~v~L~k~~~~ 107 (315)
.++..|++.|+|..+|+ +..+.-+ -++..+...+....+.+.- ++.-.++.-..|... .|..|.|+-..
T Consensus 182 ~sse~d~~s~~d~Ded~~~sr~s~~Td~ss~srl~~r~K~rrrkkR~p~~~sr~SSfSSiTdSsmslnIITV~LnMe~-- 259 (626)
T KOG3571|consen 182 LSSELDSTSFRDSDEDDLYSRLSSSTDQSSVSRLHRRKKRRRRKKRRPRVPSRASSFSSITDSSMSLNIITVTLNMET-- 259 (626)
T ss_pred ccccccceeeccCccccccccccccccchhHHHHHHHHHHhhhhhcCCCccccccccccccccccceeEEEEEecccc--
Confidence 37788888899987555 2222111 1122222111111111111 111222333344443 45555565443
Q ss_pred CCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCC-CcEEE
Q psy4487 108 YPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQE-PQVEL 186 (315)
Q Consensus 108 ~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~-~~V~L 186 (315)
-+.|||+|+|-.. ..|+.||||+.|.+||+.+.+|+|.+||.||+||.+++++++.+|||.+|+++-.. ..++|
T Consensus 260 ----vnfLGiSivgqsn-~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~l 334 (626)
T KOG3571|consen 260 ----VNFLGISIVGQSN-ARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKL 334 (626)
T ss_pred ----cccceeEeecccC-cCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEE
Confidence 4789999999554 56789999999999999999999999999999999999999999999999986442 23999
Q ss_pred EEEeCCCCC
Q psy4487 187 IVSRRIQPK 195 (315)
Q Consensus 187 vV~R~~~~~ 195 (315)
+|...+.+.
T Consensus 335 tvAk~~DP~ 343 (626)
T KOG3571|consen 335 TVAKCWDPN 343 (626)
T ss_pred EEeeccCCC
Confidence 999988765
No 4
>KOG3209|consensus
Probab=99.24 E-value=2.1e-11 Score=125.69 Aligned_cols=88 Identities=25% Similarity=0.477 Sum_probs=78.0
Q ss_pred EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487 98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE 177 (315)
Q Consensus 98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~ 177 (315)
.|-|+|.. .||||+|.||.+.. .+|||..|++.|+|+++|+|+.||+|+.|+|++++|++|.+|+.++..
T Consensus 652 dV~L~rke-------sGFGFRiLGG~ep~---qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~ 721 (984)
T KOG3209|consen 652 DVFLRRKE-------SGFGFRILGGDEPG---QPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEA 721 (984)
T ss_pred eEEEEeec-------cccceEEecCCCCC---CeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHH
Confidence 44566653 69999999998753 589999999999999999999999999999999999999999999988
Q ss_pred cCCCCcEEEEEEeCCCCC
Q psy4487 178 SRQEPQVELIVSRRIQPK 195 (315)
Q Consensus 178 s~~~~~V~LvV~R~~~~~ 195 (315)
+....+|.|+|+|.....
T Consensus 722 AArnghV~LtVRRkv~~~ 739 (984)
T KOG3209|consen 722 AARNGHVNLTVRRKVRTG 739 (984)
T ss_pred HHhcCceEEEEeeeeeec
Confidence 777778999999998544
No 5
>KOG3551|consensus
Probab=99.23 E-value=1.6e-11 Score=119.58 Aligned_cols=85 Identities=27% Similarity=0.402 Sum_probs=76.0
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
.+|.+.|.. .+||||+|.||++. .++|+|++|++|-+|++.+.|..||.||+|||.++.+.||+||++.||
T Consensus 86 R~V~V~K~d------~gGLGISIKGGreN---kMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLK 156 (506)
T KOG3551|consen 86 RRVRVVKQD------AGGLGISIKGGREN---KMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALK 156 (506)
T ss_pred ceeEEEEec------CCcceEEeecCccc---CCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHH
Confidence 566777764 58999999999985 589999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcEEEEEEeCC
Q psy4487 177 ESRQEPQVELIVSRRI 192 (315)
Q Consensus 177 ~s~~~~~V~LvV~R~~ 192 (315)
.++.+ |.|.|..-.
T Consensus 157 raGke--V~levKy~R 170 (506)
T KOG3551|consen 157 RAGKE--VLLEVKYMR 170 (506)
T ss_pred hhCce--eeeeeeeeh
Confidence 99987 888775444
No 6
>KOG1892|consensus
Probab=99.23 E-value=4.7e-11 Score=125.87 Aligned_cols=90 Identities=26% Similarity=0.397 Sum_probs=81.2
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
.|..|+|+|+ +|+|++||-.+......+||||.+|++||+|+.+|+|..||++|+|||.++.|++.+.|..+
T Consensus 933 ei~~vtL~Kn--------nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~l 1004 (1629)
T KOG1892|consen 933 EIITVTLKKN--------NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARL 1004 (1629)
T ss_pred ceEEEEEecc--------CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHH
Confidence 4667778886 69999999988888888999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEEeCCCC
Q psy4487 175 IAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~~~~ 194 (315)
+.+.+.. |.|.|....+.
T Consensus 1005 mtrtg~v--V~leVaKqgAi 1022 (1629)
T KOG1892|consen 1005 MTRTGNV--VHLEVAKQGAI 1022 (1629)
T ss_pred HhccCCe--EEEehhhhhhH
Confidence 9999977 99998766543
No 7
>KOG3209|consensus
Probab=99.16 E-value=1.1e-10 Score=120.57 Aligned_cols=83 Identities=23% Similarity=0.434 Sum_probs=72.8
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
-.|.|.|- ..||||+|.||++. .+++||-++.++|||.++|++++||+|++|||.+..+|+|+.|+++|+
T Consensus 900 ~~VelErG-------~kGFGFSiRGGrey---nM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk 969 (984)
T KOG3209|consen 900 YTVELERG-------AKGFGFSIRGGREY---NMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIK 969 (984)
T ss_pred eEEEeecc-------ccccceEeeccccc---ccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHH
Confidence 34556654 48999999999764 589999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcEEEEEEeC
Q psy4487 177 ESRQEPQVELIVSRR 191 (315)
Q Consensus 177 ~s~~~~~V~LvV~R~ 191 (315)
+.+.. |.|+++|.
T Consensus 970 ~gg~~--vll~Lr~g 982 (984)
T KOG3209|consen 970 QGGRR--VLLLLRRG 982 (984)
T ss_pred hCCeE--EEEEeccC
Confidence 98766 77777664
No 8
>KOG3549|consensus
Probab=99.12 E-value=9.9e-11 Score=112.96 Aligned_cols=87 Identities=25% Similarity=0.436 Sum_probs=78.4
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
..++++|.+ -+|||++|.||.+- ..+++|++|.++-+|+..|.|-+||-||+|||+.++..+|+||+++|+
T Consensus 56 RtVtirRQ~------vGGlGLSIKGGaEH---n~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLR 126 (505)
T KOG3549|consen 56 RTVTIRRQK------VGGLGLSIKGGAEH---NLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILR 126 (505)
T ss_pred eeEEEEeee------cCcceeeecccccc---CccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHH
Confidence 346788887 47999999999875 479999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcEEEEEEeCCCC
Q psy4487 177 ESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 177 ~s~~~~~V~LvV~R~~~~ 194 (315)
+++++ |+|+|..-.+.
T Consensus 127 NAGde--VtlTV~~lr~A 142 (505)
T KOG3549|consen 127 NAGDE--VTLTVKHLRAA 142 (505)
T ss_pred hcCCE--EEEEeHhhhcC
Confidence 99988 99999766543
No 9
>KOG3553|consensus
Probab=99.10 E-value=1.7e-10 Score=93.88 Aligned_cols=102 Identities=23% Similarity=0.334 Sum_probs=77.3
Q ss_pred CCCCCCceeEEEEEEeccCCCC--CCCCCccceEEEcCcCC-------CCCCCCeEEEeecCCChhcccCCCCCCCEEEE
Q psy4487 87 KPSADGKYMIGHMILRKSGDRY--PSASSTLGIKVIGGKLL-------EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIE 157 (315)
Q Consensus 87 q~s~~g~~~i~~v~L~k~~~~~--~~~~~gLGfsIvGGk~~-------~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILe 157 (315)
+|...-+-....+.|.|..+-. ....--+||+|-||.+. .-.+.||||++|.+||||+.+| |+.+|.|++
T Consensus 7 ~pG~aveclsi~velHK~~~~d~~Gre~l~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQ 85 (124)
T KOG3553|consen 7 IPGQAVECLSIRVELHKLRDYDQQGRENLILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQ 85 (124)
T ss_pred CCCCceEEEEEEEEeeeehhhhcCCcEEEEEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEE
Confidence 3333333444566777665321 12234589999999887 3457899999999999999887 999999999
Q ss_pred ECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 158 WNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 158 VNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
|||-+++-+||+.|++.|++.. .+.++|.|..
T Consensus 86 vNG~DfTMvTHd~Avk~i~k~~---vl~mLVaR~~ 117 (124)
T KOG3553|consen 86 VNGWDFTMVTHDQAVKRITKEE---VLRMLVARQS 117 (124)
T ss_pred ecCceeEEEEhHHHHHHhhHhH---HHHHHHHhhc
Confidence 9999999999999999998843 2566666654
No 10
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.05 E-value=2.3e-09 Score=81.51 Aligned_cols=79 Identities=34% Similarity=0.582 Sum_probs=65.7
Q ss_pred EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487 98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE 177 (315)
Q Consensus 98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~ 177 (315)
++.|.+.. ..+|||.+.++... ..+++|..|.++++|+..| |++||+|++|||..+.+++++++..+++.
T Consensus 3 ~~~l~~~~------~~~~G~~~~~~~~~---~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~ 72 (82)
T cd00992 3 TVTLRKDP------GGGLGFSLRGGKDS---GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKN 72 (82)
T ss_pred EEEEEeCC------CCCcCEEEeCcccC---CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHh
Confidence 34566653 46899999987643 3589999999999999855 99999999999999999999999999998
Q ss_pred cCCCCcEEEEE
Q psy4487 178 SRQEPQVELIV 188 (315)
Q Consensus 178 s~~~~~V~LvV 188 (315)
.... ++|.|
T Consensus 73 ~~~~--v~l~v 81 (82)
T cd00992 73 SGDE--VTLTV 81 (82)
T ss_pred CCCe--EEEEE
Confidence 7654 77765
No 11
>KOG3580|consensus
Probab=99.05 E-value=3.4e-10 Score=115.22 Aligned_cols=88 Identities=27% Similarity=0.376 Sum_probs=79.1
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCC---CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLL---EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE 172 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~---~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav 172 (315)
...++|.|.+ ..||||.|.||++. ++|+..|+|+.|.|||||+ |.|+.||+|+-|||+++++.+|.-|+
T Consensus 9 QhTvTL~kdp------~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAv 80 (1027)
T KOG3580|consen 9 QHTVTLQKDP------KRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAV 80 (1027)
T ss_pred hheeeeecCC------CCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHH
Confidence 3457788876 58999999999987 5678899999999999999 89999999999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEEeCCC
Q psy4487 173 DIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 173 ~iLk~s~~~~~V~LvV~R~~~ 193 (315)
++|+.++.. ..|+|.|+..
T Consensus 81 QqLrksgK~--A~ItvkRprk 99 (1027)
T KOG3580|consen 81 QQLRKSGKV--AAITVKRPRK 99 (1027)
T ss_pred HHHHhhccc--eeEEecccce
Confidence 999999987 7788888763
No 12
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.01 E-value=2.7e-09 Score=79.20 Aligned_cols=68 Identities=32% Similarity=0.603 Sum_probs=59.5
Q ss_pred ccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEE
Q psy4487 114 TLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIV 188 (315)
Q Consensus 114 gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV 188 (315)
+|||.+.++.+ .+++|..|.++++|+..| |++||+|++|||.++.+.+++++.++|+...+ ..|+|.|
T Consensus 2 ~~G~~~~~~~~-----~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g-~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTE-----GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVG-EKVTLTV 69 (70)
T ss_pred CccEEEecCCC-----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCC-CeEEEEE
Confidence 68999998654 489999999999999755 99999999999999999999999999998773 2477765
No 13
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.95 E-value=1.4e-08 Score=77.14 Aligned_cols=73 Identities=34% Similarity=0.560 Sum_probs=63.3
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~ 191 (315)
..|||.+..+.... .+++|..|.++++|++.| |++||+|++|||+.+.+.++.++...++..+.. +.|.+.|.
T Consensus 12 ~~~G~~~~~~~~~~---~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~--~~l~i~r~ 84 (85)
T smart00228 12 GGLGFSLVGGKDEG---GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGK--VTLTVLRG 84 (85)
T ss_pred CcccEEEECCCCCC---CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe--EEEEEEeC
Confidence 68999998764321 589999999999999988 999999999999999999999999999887544 89988875
No 14
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=98.89 E-value=3.3e-09 Score=89.42 Aligned_cols=47 Identities=28% Similarity=0.435 Sum_probs=44.1
Q ss_pred ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCC-CCCCCeEEEeecCCC
Q psy4487 250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNG-QPRCPYAKIYLLPDR 315 (315)
Q Consensus 250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~-~~~~pyvk~~llpd~ 315 (315)
|+|+|+|.|+.. ..+|.|+|++|+||++++.. +.+|||||+||+|++
T Consensus 2 G~i~~sl~Y~~~-------------------~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~ 49 (128)
T cd08392 2 GEIEFALHYNFR-------------------TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDK 49 (128)
T ss_pred cEEEEEEEEeCC-------------------CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCC
Confidence 899999999998 88999999999999999874 899999999999984
No 15
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=98.89 E-value=3.5e-09 Score=90.36 Aligned_cols=46 Identities=30% Similarity=0.421 Sum_probs=44.3
Q ss_pred ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
|+|+|+|.|++. +.+|.|+|++|+||++++..+.+|||||+||+||
T Consensus 2 G~i~~sL~Y~~~-------------------~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~ 47 (136)
T cd08406 2 GEILLSLSYLPT-------------------AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQD 47 (136)
T ss_pred cEEEEEEEEcCC-------------------CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeC
Confidence 899999999998 8899999999999999999999999999999997
No 16
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=98.88 E-value=4e-09 Score=88.73 Aligned_cols=46 Identities=26% Similarity=0.348 Sum_probs=43.1
Q ss_pred eeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCCC
Q psy4487 251 RIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315 (315)
Q Consensus 251 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd~ 315 (315)
+|+|+|.|++. ..+|.|+|++|+||++++..+.+|||||+|||||+
T Consensus 2 ~i~~sL~Y~~~-------------------~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~ 47 (124)
T cd08680 2 QVQIGLRYDSG-------------------DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCS 47 (124)
T ss_pred eEEEEEEECCC-------------------CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCC
Confidence 58899999988 88999999999999999989999999999999985
No 17
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=98.85 E-value=6.8e-09 Score=86.64 Aligned_cols=48 Identities=31% Similarity=0.476 Sum_probs=44.3
Q ss_pred cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCC-CCCCCeEEEeecCCC
Q psy4487 249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNG-QPRCPYAKIYLLPDR 315 (315)
Q Consensus 249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~-~~~~pyvk~~llpd~ 315 (315)
+|+|+|+|.|+.. ..+|.|+|++|+||++++.. +.+|||||+||+|+.
T Consensus 1 ~G~i~~sl~y~~~-------------------~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~ 49 (125)
T cd08393 1 QGSVQFALDYDPK-------------------LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDK 49 (125)
T ss_pred CcEEEEEEEEECC-------------------CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCC
Confidence 4999999999998 88999999999999999975 889999999999973
No 18
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=98.77 E-value=1.6e-08 Score=86.74 Aligned_cols=46 Identities=17% Similarity=0.081 Sum_probs=42.0
Q ss_pred ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCC--CCCCCCCeEEEeecCC
Q psy4487 250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRS--NGQPRCPYAKIYLLPD 314 (315)
Q Consensus 250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~--~~~~~~pyvk~~llpd 314 (315)
|+|+|+|.|++. +.+|.|+|++|+||++++ ..+.+|||||++|+|+
T Consensus 2 Gel~~sL~Y~~~-------------------~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~ 49 (138)
T cd08407 2 GEVLLSISYLPA-------------------ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQ 49 (138)
T ss_pred CEEEEEEEEeCC-------------------CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcC
Confidence 899999999999 889999999999999998 3345899999999996
No 19
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=98.76 E-value=1.8e-08 Score=83.91 Aligned_cols=44 Identities=39% Similarity=0.675 Sum_probs=41.2
Q ss_pred cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
+|+|+|+|.|+.. .|.|+|++|++|++++ ++.+|||||++|+|+
T Consensus 1 ~G~l~~~l~y~~~---------------------~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~ 44 (122)
T cd08381 1 GGQVKLSISYKNG---------------------TLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPD 44 (122)
T ss_pred CCeEEEEEEEeCC---------------------EEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeC
Confidence 5999999999966 8999999999999999 889999999999986
No 20
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=98.74 E-value=2.4e-08 Score=86.53 Aligned_cols=48 Identities=33% Similarity=0.553 Sum_probs=42.0
Q ss_pred cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCC-CCCCCCCeEEEeecCCC
Q psy4487 247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRS-NGQPRCPYAKIYLLPDR 315 (315)
Q Consensus 247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~-~~~~~~pyvk~~llpd~ 315 (315)
+..|+|+|+|.|..+ .|.|+|++|+||++++ ..+.+|||||+||+|++
T Consensus 15 ~~~G~l~lsl~y~~~---------------------~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~ 63 (146)
T cd04028 15 PSMGDIQLGLYDKKG---------------------QLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGK 63 (146)
T ss_pred CCcceEEEEEEeCCC---------------------EEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCC
Confidence 446999999999544 8999999999999985 57789999999999974
No 21
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.72 E-value=9.7e-08 Score=73.80 Aligned_cols=73 Identities=32% Similarity=0.470 Sum_probs=59.3
Q ss_pred ccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 114 TLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 114 gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
+||+.+..-.. ..+++|..|.++|||+++| |++||.|++|||+.+ .+..+...+|........|.|.|.|...
T Consensus 2 ~lGv~~~~~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v--~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 74 (82)
T PF13180_consen 2 GLGVTVQNLSD----TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPV--NSSEDLVNILSKGKPGDTVTLTVLRDGE 74 (82)
T ss_dssp E-SEEEEECSC----SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEES--SSHHHHHHHHHCSSTTSEEEEEEEETTE
T ss_pred EECeEEEEccC----CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEc--CCHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence 57888775332 3589999999999999988 999999999999999 5789999999766555679999999653
No 22
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.72 E-value=3e-08 Score=82.75 Aligned_cols=48 Identities=25% Similarity=0.428 Sum_probs=45.3
Q ss_pred cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCCC
Q psy4487 249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315 (315)
Q Consensus 249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd~ 315 (315)
.|+|+|+|.|++. +.+|.|+|++|+||++++.++..|||||++|||++
T Consensus 2 ~G~l~~sl~Y~~~-------------------~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~ 49 (124)
T cd08389 2 CGDLDVAFEYDPS-------------------ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK 49 (124)
T ss_pred CEEEEEEEEECCC-------------------CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC
Confidence 5999999999999 88999999999999999999999999999999974
No 23
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=98.70 E-value=3.8e-08 Score=82.31 Aligned_cols=48 Identities=31% Similarity=0.441 Sum_probs=43.4
Q ss_pred cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCC-CCCCCCeEEEeecCCC
Q psy4487 249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSN-GQPRCPYAKIYLLPDR 315 (315)
Q Consensus 249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~-~~~~~pyvk~~llpd~ 315 (315)
.|+|+|+|.|+.. +..|.|+|++|+||++++. .+.+|||||+||+|+.
T Consensus 1 ~G~i~~sl~y~~~-------------------~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~ 49 (125)
T cd04029 1 SGEILFSLSYDYK-------------------TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDK 49 (125)
T ss_pred CcEEEEEEEEECC-------------------CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCC
Confidence 3899999999988 8899999999999999875 4789999999999963
No 24
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.69 E-value=3.2e-08 Score=84.44 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=43.6
Q ss_pred ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
|+|+++|.|+.. ..+|.|+|++|+||++++.++..|||||++|+|+
T Consensus 2 ~ei~~sL~Y~~~-------------------~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~ 47 (138)
T cd08408 2 PELLLGLEYNAL-------------------TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNS 47 (138)
T ss_pred CeEEEEeEEcCC-------------------CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeC
Confidence 689999999998 8899999999999999999999999999999995
No 25
>KOG1028|consensus
Probab=98.69 E-value=2.9e-08 Score=99.44 Aligned_cols=52 Identities=33% Similarity=0.509 Sum_probs=48.6
Q ss_pred cCcccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCCC
Q psy4487 245 NSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315 (315)
Q Consensus 245 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd~ 315 (315)
+..+.|+|++++.|++. ..+|.|+|++|.+|++.+.+|.+|||||+|||||+
T Consensus 149 ~~~~~G~l~fsl~Yd~~-------------------~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk 200 (421)
T KOG1028|consen 149 NVKAVGNLQFSLQYDFE-------------------LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDK 200 (421)
T ss_pred cceeeeeEEEEEEeccc-------------------CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCC
Confidence 45677999999999999 88999999999999999988899999999999996
No 26
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=98.67 E-value=4.4e-08 Score=82.19 Aligned_cols=43 Identities=12% Similarity=0.075 Sum_probs=38.5
Q ss_pred ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
|+|+++|.|++. ..+|+|+|++|++|+ . .+.+|||||++|+|+
T Consensus 1 ~~l~fsL~Y~~~-------------------~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~ 43 (118)
T cd08677 1 PKLHYSLSYDKQ-------------------KAELHVNILEAENIS-V--DAGCECYISGCVSVS 43 (118)
T ss_pred CeEEEEEEEcCc-------------------CCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCC
Confidence 579999999999 899999999999999 3 345999999999985
No 27
>KOG3580|consensus
Probab=98.65 E-value=6.2e-08 Score=99.10 Aligned_cols=75 Identities=25% Similarity=0.478 Sum_probs=67.5
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~ 191 (315)
+...|+++.||.+ .||||..|..|++|++.| |+.||+||.||.+++.+++.+||+..|...+...+|+|+-++.
T Consensus 416 GdSvGLRLAGGND-----VGIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~k 489 (1027)
T KOG3580|consen 416 GDSVGLRLAGGND-----VGIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQSK 489 (1027)
T ss_pred CCeeeeEeccCCc-----eeEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhhh
Confidence 4689999999986 599999999999999988 9999999999999999999999999999987766788876655
Q ss_pred C
Q psy4487 192 I 192 (315)
Q Consensus 192 ~ 192 (315)
.
T Consensus 490 ~ 490 (1027)
T KOG3580|consen 490 A 490 (1027)
T ss_pred h
Confidence 4
No 28
>KOG3651|consensus
Probab=98.64 E-value=1e-07 Score=90.99 Aligned_cols=84 Identities=27% Similarity=0.393 Sum_probs=73.9
Q ss_pred EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487 98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE 177 (315)
Q Consensus 98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~ 177 (315)
.++|.|+. .+-+||+|-||...+ ..+||-+|.-+.||+++|+++.||+|+.|||+++.|.+.-++.++|+.
T Consensus 7 ~v~ltKD~------~nliGISIGGGapyC---PClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~ 77 (429)
T KOG3651|consen 7 TVELTKDE------KNLIGISIGGGAPYC---PCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQV 77 (429)
T ss_pred cEEEeecc------ccceeEEecCCCCcC---CeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHH
Confidence 46788765 477899999998664 589999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEEeCC
Q psy4487 178 SRQEPQVELIVSRRI 192 (315)
Q Consensus 178 s~~~~~V~LvV~R~~ 192 (315)
+.++ |.+.+-.-.
T Consensus 78 ~~~e--V~IhyNKL~ 90 (429)
T KOG3651|consen 78 SLNE--VKIHYNKLE 90 (429)
T ss_pred hccc--eEEEehhcc
Confidence 9987 888764433
No 29
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=98.63 E-value=6.9e-08 Score=80.24 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=38.4
Q ss_pred ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
|+|++++.|... .|.|+|++|+||++++ .+.+|||||+||+|+
T Consensus 1 G~l~l~~~~~~~---------------------~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~ 43 (119)
T cd08685 1 GQLKLSIEGQNR---------------------KLTLHVLEAKGLRSTN-SGTCNSYVKISLSPD 43 (119)
T ss_pred CEEEEEEEEcCC---------------------EEEEEEEEEECCCCCC-CCCCCeeEEEEEEeC
Confidence 788888888544 8999999999999998 778999999999996
No 30
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.62 E-value=2.1e-07 Score=71.48 Aligned_cols=71 Identities=28% Similarity=0.496 Sum_probs=59.3
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~ 191 (315)
.+|||.+.-. ..+++|..|.++++|++.| |++||+|++|||+.+.+.++.++..+++...+. .+.|.|.|.
T Consensus 2 ~~lG~~~~~~------~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~-~i~l~v~r~ 72 (85)
T cd00988 2 GGIGLELKYD------DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGT-KVRLTLKRG 72 (85)
T ss_pred eEEEEEEEEc------CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCC-EEEEEEEcC
Confidence 4788887632 2479999999999999876 999999999999999988889999999775443 488998886
No 31
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=98.62 E-value=9.6e-08 Score=78.73 Aligned_cols=48 Identities=35% Similarity=0.551 Sum_probs=44.5
Q ss_pred cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCCC
Q psy4487 249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315 (315)
Q Consensus 249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd~ 315 (315)
.|+|+|+|.|+.. ..+|.|+|++|++|++++..+.+|||||++++|++
T Consensus 2 ~G~l~~~l~y~~~-------------------~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~ 49 (124)
T cd08385 2 LGKLQFSLDYDFQ-------------------SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK 49 (124)
T ss_pred ccEEEEEEEEeCC-------------------CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC
Confidence 4899999999988 88999999999999999988899999999999863
No 32
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=98.62 E-value=9.1e-08 Score=80.32 Aligned_cols=48 Identities=23% Similarity=0.374 Sum_probs=44.3
Q ss_pred cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCC-CCCCCeEEEeecCCC
Q psy4487 249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNG-QPRCPYAKIYLLPDR 315 (315)
Q Consensus 249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~-~~~~pyvk~~llpd~ 315 (315)
.|+|+|+|.|+.. ...|.|+|++|++|++++.. +.+|||||++|+|++
T Consensus 2 ~G~l~~~l~y~~~-------------------~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~ 50 (128)
T cd08388 2 LGTLFFSLRYNSE-------------------KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEK 50 (128)
T ss_pred CeEEEEEEEEECC-------------------CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCc
Confidence 5999999999999 88999999999999999875 889999999999873
No 33
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=98.60 E-value=1.2e-07 Score=77.58 Aligned_cols=46 Identities=30% Similarity=0.462 Sum_probs=42.9
Q ss_pred ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCC-CCCCCCCeEEEeecCC
Q psy4487 250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRS-NGQPRCPYAKIYLLPD 314 (315)
Q Consensus 250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~-~~~~~~pyvk~~llpd 314 (315)
|+|+|+|.|+.. ...|.|+|++|+||++.+ ..+..|||||++|+|+
T Consensus 1 G~i~~~l~y~~~-------------------~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~ 47 (123)
T cd08521 1 GEIEFSLSYNYK-------------------TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPD 47 (123)
T ss_pred CeEEEEEEEeCC-------------------CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecC
Confidence 799999999988 889999999999999998 6788999999999986
No 34
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=98.59 E-value=1.5e-07 Score=77.73 Aligned_cols=47 Identities=34% Similarity=0.481 Sum_probs=44.4
Q ss_pred cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
+|+|+|+|.|++. ...|.|+|++|++|++++..+.+|||||++|+|+
T Consensus 2 ~G~l~~sl~y~~~-------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~ 48 (124)
T cd08387 2 RGELHFSLEYDKD-------------------MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPD 48 (124)
T ss_pred CCEEEEEEEECCC-------------------CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecC
Confidence 5999999999998 8899999999999999998889999999999986
No 35
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=98.57 E-value=1.6e-07 Score=77.52 Aligned_cols=47 Identities=36% Similarity=0.578 Sum_probs=44.1
Q ss_pred cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
.|+|+|+|.|+.. ..+|.|+|++|++|+.++..+.+|||||++|+|+
T Consensus 2 ~G~l~~~l~y~~~-------------------~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~ 48 (127)
T cd04030 2 LGRIQLTIRYSSQ-------------------RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPD 48 (127)
T ss_pred CeEEEEEEEEeCC-------------------CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcC
Confidence 3899999999998 8899999999999999998899999999999985
No 36
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=98.56 E-value=1.6e-07 Score=79.05 Aligned_cols=47 Identities=23% Similarity=0.276 Sum_probs=43.9
Q ss_pred cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
+|+|+|+|.|+.. +.+|.|+|++|++|++++..+.+|||||++|+++
T Consensus 1 ~G~l~~~l~y~~~-------------------~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~ 47 (136)
T cd08404 1 RGELLLSLCYQPT-------------------TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYG 47 (136)
T ss_pred CCeEEEEEEEeCC-------------------CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcC
Confidence 4999999999988 8899999999999999998899999999999875
No 37
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=98.54 E-value=2.2e-07 Score=76.35 Aligned_cols=47 Identities=49% Similarity=0.872 Sum_probs=44.1
Q ss_pred cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
.|+|+++|.|+.. +.+|.|+|++|++|++++..+.+||||+++|+++
T Consensus 2 ~G~l~~~l~~~~~-------------------~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~ 48 (125)
T cd04031 2 TGRIQIQLWYDKV-------------------TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPD 48 (125)
T ss_pred cEEEEEEEEEeCC-------------------CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccC
Confidence 4999999999998 8899999999999999998889999999999974
No 38
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=98.54 E-value=1.7e-07 Score=79.57 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=42.9
Q ss_pred cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
.|+|+|+|.|++. ..+|.|+|++|+||++.+ .+..|||||++|+|+
T Consensus 1 ~G~i~~sl~y~~~-------------------~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~ 46 (137)
T cd08409 1 LGDIQISLTYNPT-------------------LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIH 46 (137)
T ss_pred CcEEEEEEEECCC-------------------CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEEC
Confidence 3899999999998 889999999999999998 777999999999986
No 39
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=98.53 E-value=2.5e-07 Score=75.88 Aligned_cols=46 Identities=35% Similarity=0.528 Sum_probs=43.1
Q ss_pred ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCC-CCCCCCCeEEEeecCC
Q psy4487 250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRS-NGQPRCPYAKIYLLPD 314 (315)
Q Consensus 250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~-~~~~~~pyvk~~llpd 314 (315)
|+|+|+|.|+.. +.+|.|+|++|++|++++ ..+..||||+++++|+
T Consensus 1 G~l~~~l~y~~~-------------------~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~ 47 (123)
T cd08390 1 GRLWFSVQYDLE-------------------EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPD 47 (123)
T ss_pred CEEEEEEEECCC-------------------CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeC
Confidence 899999999999 889999999999999998 6788999999999986
No 40
>KOG3606|consensus
Probab=98.52 E-value=2.2e-07 Score=87.57 Aligned_cols=76 Identities=25% Similarity=0.465 Sum_probs=64.4
Q ss_pred CCCccceEEEcCcCC---C---CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcE
Q psy4487 111 ASSTLGIKVIGGKLL---E---DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQV 184 (315)
Q Consensus 111 ~~~gLGfsIvGGk~~---~---~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V 184 (315)
....|||-|.-|... . ..-.||||+++.|||.|+..|.|-+.|+||||||+.+.|+|.+++..++-..... +
T Consensus 169 ~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshN--L 246 (358)
T KOG3606|consen 169 SEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHN--L 246 (358)
T ss_pred CCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcccc--e
Confidence 457899999887643 1 2347999999999999999999999999999999999999999999988776655 6
Q ss_pred EEEE
Q psy4487 185 ELIV 188 (315)
Q Consensus 185 ~LvV 188 (315)
.++|
T Consensus 247 IiTV 250 (358)
T KOG3606|consen 247 IITV 250 (358)
T ss_pred EEEe
Confidence 6665
No 41
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=98.43 E-value=5.6e-07 Score=75.16 Aligned_cols=45 Identities=24% Similarity=0.448 Sum_probs=41.5
Q ss_pred eeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 251 RIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 251 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
+|+|+|.|+.. ..+|.|+|++|++|++.+..+.+|||||++++|+
T Consensus 1 ~i~~~l~y~~~-------------------~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~ 45 (133)
T cd08384 1 KILVSLMYNTQ-------------------RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPD 45 (133)
T ss_pred CEEEEEEEcCC-------------------CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcC
Confidence 57889999888 8899999999999999998889999999999985
No 42
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=98.42 E-value=4.9e-07 Score=77.61 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=41.5
Q ss_pred eeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 251 RIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 251 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
.|+|+|+|.+. +.+|+|+|++|++|++.+.++..|||||++|+++
T Consensus 2 el~~sL~Y~p~-------------------~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~ 46 (135)
T cd08692 2 ELQLGTCFQAV-------------------NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFST 46 (135)
T ss_pred eEEEEeeecCc-------------------CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEEC
Confidence 68999999999 9999999999999999977777899999999975
No 43
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.41 E-value=7.7e-07 Score=73.31 Aligned_cols=47 Identities=34% Similarity=0.488 Sum_probs=44.0
Q ss_pred cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
.|+|+|+|.|+.. ...|.|+|++|++|++++..+..||||+++++|+
T Consensus 2 ~G~l~~~l~y~~~-------------------~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~ 48 (125)
T cd08386 2 LGRIQFSVSYDFQ-------------------ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPD 48 (125)
T ss_pred ccEEEEEEEECCC-------------------CCEEEEEEEEecCCCCccCCCCCCceEEEEECCC
Confidence 4999999999988 8899999999999999998888999999999986
No 44
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=98.40 E-value=7.1e-07 Score=75.39 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=43.0
Q ss_pred ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
|+|+|+|.|.+. ..+|.|+|+.|++|++.+..+.+|||||++|+++
T Consensus 1 G~i~~~l~y~~~-------------------~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~ 46 (135)
T cd08410 1 GELLLSLNYLPS-------------------AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHG 46 (135)
T ss_pred CcEEEEEEECCC-------------------CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcC
Confidence 789999999888 8899999999999999998889999999999874
No 45
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.38 E-value=7.9e-07 Score=74.73 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=43.4
Q ss_pred cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
.|+|+|+|+|+.. ..+|.|+|++|++|++.+..+..|||||++|+|.
T Consensus 1 ~G~l~~sl~y~~~-------------------~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~ 47 (136)
T cd08405 1 RGELLLSLCYNPT-------------------ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYK 47 (136)
T ss_pred CcEEEEEEEEcCC-------------------CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeC
Confidence 4999999999988 8899999999999999988889999999999863
No 46
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=98.38 E-value=9.4e-07 Score=72.82 Aligned_cols=47 Identities=26% Similarity=0.375 Sum_probs=43.6
Q ss_pred cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
.|+|+++|.|+.. +..|.|+|++|++|++.+..+..|||||++++|+
T Consensus 1 ~G~~~~~l~y~~~-------------------~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~ 47 (123)
T cd04035 1 LGTLEFTLLYDPA-------------------NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPG 47 (123)
T ss_pred CcEEEEEEEEeCC-------------------CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecC
Confidence 3899999999999 8899999999999999988889999999999874
No 47
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=98.37 E-value=9e-07 Score=73.26 Aligned_cols=46 Identities=26% Similarity=0.366 Sum_probs=43.1
Q ss_pred ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
|+|+|.|.|+.. ..+|.|+|++|++|+.++..+..||||+++|+++
T Consensus 1 G~i~~~l~y~~~-------------------~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~ 46 (134)
T cd00276 1 GELLLSLSYLPT-------------------AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQG 46 (134)
T ss_pred CeEEEEEEeeCC-------------------CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcC
Confidence 789999999988 7899999999999999998889999999999985
No 48
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=98.36 E-value=1e-06 Score=77.24 Aligned_cols=59 Identities=24% Similarity=0.222 Sum_probs=44.6
Q ss_pred cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
+|.|.|+|.|++...-.+. -+.-.....|.|+|++|++|++.+..+.+|||||++|+|+
T Consensus 1 ~G~l~~~l~y~~~~~~~~~-------~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~ 59 (162)
T cd04020 1 RGELKVALKYVPPESEGAL-------KSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPD 59 (162)
T ss_pred CceEEEEEEecCccccccc-------cccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcC
Confidence 4999999999885100000 0011125689999999999999998999999999999986
No 49
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.35 E-value=2.5e-06 Score=65.63 Aligned_cols=60 Identities=23% Similarity=0.379 Sum_probs=50.9
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.|++|..|.++++|+..| |+.||+|++|||..+. +++++...|........+.|.+.|..
T Consensus 10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g 69 (79)
T cd00991 10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPST 69 (79)
T ss_pred CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECC
Confidence 589999999999999876 9999999999999996 78899999987532234889888754
No 50
>KOG3552|consensus
Probab=98.34 E-value=5.9e-07 Score=95.49 Aligned_cols=75 Identities=27% Similarity=0.531 Sum_probs=66.5
Q ss_pred EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487 98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE 177 (315)
Q Consensus 98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~ 177 (315)
.+.++++. .|||-++-|+ +++|..|.+||++. |+|++||+||.|||.++.+..++-|+++++.
T Consensus 58 ~vq~~r~~--------~lGFgfvagr-------PviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRa 120 (1298)
T KOG3552|consen 58 QVQLQRNA--------SLGFGFVAGR-------PVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRA 120 (1298)
T ss_pred hhhhhccc--------cccceeecCC-------ceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHH
Confidence 34566664 5777777763 79999999999999 9999999999999999999999999999999
Q ss_pred cCCCCcEEEEEEeC
Q psy4487 178 SRQEPQVELIVSRR 191 (315)
Q Consensus 178 s~~~~~V~LvV~R~ 191 (315)
+... |.|+|.++
T Consensus 121 ce~s--v~ltV~qP 132 (1298)
T KOG3552|consen 121 CESS--VNLTVCQP 132 (1298)
T ss_pred Hhhh--cceEEecc
Confidence 9987 99999996
No 51
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=98.32 E-value=1.3e-06 Score=73.25 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=43.0
Q ss_pred ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
|+|+|+|.|... +..|.|+|++|++|++.+..+.+|||||++|+++
T Consensus 1 g~l~~~~~y~~~-------------------~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~ 46 (134)
T cd08403 1 GELMFSLCYLPT-------------------AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCE 46 (134)
T ss_pred CeEEEEEEEcCC-------------------CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeC
Confidence 789999999988 8899999999999999998899999999999864
No 52
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=98.27 E-value=2.1e-06 Score=72.14 Aligned_cols=47 Identities=26% Similarity=0.282 Sum_probs=43.5
Q ss_pred cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
.|+|+++|.|++. ..+|.|+|++|++|+.++.++.+|||||++|+++
T Consensus 1 ~G~l~~~l~y~~~-------------------~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~ 47 (136)
T cd08402 1 LGDICFSLRYVPT-------------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN 47 (136)
T ss_pred CcEEEEEeEEcCC-------------------CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEEC
Confidence 3899999999988 8899999999999999998999999999999864
No 53
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.24 E-value=6.5e-06 Score=62.91 Aligned_cols=59 Identities=29% Similarity=0.477 Sum_probs=49.3
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.|++|..|.++++|+. | |++||+|++|||..+. +++++..++........+.|.+.|..
T Consensus 8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~g 66 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKREE 66 (79)
T ss_pred cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECC
Confidence 4799999999999995 6 9999999999999995 78899999986433335899988864
No 54
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=98.24 E-value=3e-06 Score=71.23 Aligned_cols=47 Identities=30% Similarity=0.478 Sum_probs=43.1
Q ss_pred cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
.|+|.|++.|+.. ...|.|+|++|++|++.+..+.+||||+++++++
T Consensus 2 ~G~l~~~l~y~~~-------------------~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~ 48 (133)
T cd04009 2 YGVLTVKAYYRAS-------------------EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPR 48 (133)
T ss_pred ceEEEEEEEEcCC-------------------CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECC
Confidence 4899999999988 7799999999999999988889999999999864
No 55
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.19 E-value=7.3e-06 Score=81.25 Aligned_cols=79 Identities=23% Similarity=0.337 Sum_probs=61.4
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~ 191 (315)
..|+|+.+.-.........+++|..|.++|||+++| |+.||+|++|||+++.+.++.++...|+...+. .|.|.|.|.
T Consensus 84 ~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~-~v~ltv~r~ 161 (389)
T PLN00049 84 VTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGS-SVELTLRRG 161 (389)
T ss_pred ceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCC-EEEEEEEEC
Confidence 468888875321111112379999999999999887 999999999999999999999999888765443 489998875
Q ss_pred C
Q psy4487 192 I 192 (315)
Q Consensus 192 ~ 192 (315)
.
T Consensus 162 g 162 (389)
T PLN00049 162 P 162 (389)
T ss_pred C
Confidence 4
No 56
>KOG3542|consensus
Probab=98.18 E-value=2.2e-06 Score=88.94 Aligned_cols=86 Identities=29% Similarity=0.456 Sum_probs=72.1
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
.-..|+|.|.. ....|-|+++||.+.. .||||..|.||+.|++.| |+-||+|++|||++.++++...|.++
T Consensus 535 K~RqviLtk~s-----re~pl~f~L~GGsEkG---fgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~ei 605 (1283)
T KOG3542|consen 535 KPRQVILTKAS-----REDPLMFRLVGGSEKG---FGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEI 605 (1283)
T ss_pred cceeEEEeccc-----ccCCceeEeccCcccc---ceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHH
Confidence 34567787742 2478999999998753 589999999999999988 99999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEEeCC
Q psy4487 175 IAESRQEPQVELIVSRRI 192 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~~ 192 (315)
|++.. ++.|.|..+.
T Consensus 606 Lrnnt---hLtltvKtNv 620 (1283)
T KOG3542|consen 606 LRNNT---HLTLTVKTNV 620 (1283)
T ss_pred hcCCc---eEEEEEecce
Confidence 98874 3777776654
No 57
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.18 E-value=1e-05 Score=61.11 Aligned_cols=59 Identities=34% Similarity=0.559 Sum_probs=49.8
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.+++|..|.++++|++.| |++||+|++|||+.+. +++++...++...+. .+.+.+.|..
T Consensus 12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~-~~~l~v~r~~ 70 (79)
T cd00989 12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIK--SWEDLVDAVQENPGK-PLTLTVERNG 70 (79)
T ss_pred cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHHCCCc-eEEEEEEECC
Confidence 468999999999999877 9999999999999996 678998888876432 4888888754
No 58
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.15 E-value=1.2e-05 Score=62.00 Aligned_cols=60 Identities=33% Similarity=0.551 Sum_probs=49.9
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.|++|..|.++++|++.| |+.||+|++|||+.+. ++.++..++........+.|.+.|..
T Consensus 24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~--~~~~~~~~l~~~~~~~~i~l~v~r~g 83 (90)
T cd00987 24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVK--SVADLRRALAELKPGDKVTLTVLRGG 83 (90)
T ss_pred CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 489999999999999877 9999999999999996 67788888877643334888887754
No 59
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.10 E-value=1.1e-05 Score=61.34 Aligned_cols=57 Identities=35% Similarity=0.454 Sum_probs=43.8
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.+++|..|.++++|+..| |++||+|++|||..+.+ +.++ ++.......+.|.+.|..
T Consensus 12 ~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~---l~~~~~~~~v~l~v~r~g 68 (80)
T cd00990 12 GLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQDR---LKEYQAGDPVELTVFRDD 68 (80)
T ss_pred CcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHHH---HHhcCCCCEEEEEEEECC
Confidence 479999999999999877 99999999999999964 4444 433222234888888754
No 60
>KOG3605|consensus
Probab=98.07 E-value=4.4e-06 Score=86.41 Aligned_cols=91 Identities=24% Similarity=0.354 Sum_probs=75.2
Q ss_pred eeEEEEEEeccCCCCCCCCCccceEEEc-CcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487 94 YMIGHMILRKSGDRYPSASSTLGIKVIG-GKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE 172 (315)
Q Consensus 94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvG-Gk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav 172 (315)
.....|+|-|.+ +..||+-||- |-. .--.-++|.....+|||++.|+|-+||+|++|||++|.|+...-+.
T Consensus 644 E~qKEVvv~K~k------GEiLGVViVESGWG--SmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQ 715 (829)
T KOG3605|consen 644 ENQKEVVLEKHK------GEILGVVIVESGWG--SILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQ 715 (829)
T ss_pred cccceeeeeccc------CceeeEEEEecCcc--ccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHH
Confidence 345677888876 6899999984 221 2234578999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEEeCC
Q psy4487 173 DIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 173 ~iLk~s~~~~~V~LvV~R~~ 192 (315)
.+||+.+....|.|.|-+-.
T Consensus 716 s~Ik~~KnQT~VkltiV~cp 735 (829)
T KOG3605|consen 716 SIIKGLKNQTAVKLNIVSCP 735 (829)
T ss_pred HHHhcccccceEEEEEecCC
Confidence 99999998777888775543
No 61
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.03 E-value=1.5e-05 Score=79.61 Aligned_cols=74 Identities=26% Similarity=0.406 Sum_probs=65.1
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~ 191 (315)
-.|+|+.+.-... .++.|..+.+++||+++| |++||.|+.|||.++.+++.++|+..|+...+. +|+|.|.|.
T Consensus 99 ~~GiG~~i~~~~~-----~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt-~V~L~i~r~ 171 (406)
T COG0793 99 FGGIGIELQMEDI-----GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGT-KVTLTILRA 171 (406)
T ss_pred ccceeEEEEEecC-----CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCC-eEEEEEEEc
Confidence 4689988874321 579999999999999998 999999999999999999999999999998874 599999997
Q ss_pred C
Q psy4487 192 I 192 (315)
Q Consensus 192 ~ 192 (315)
.
T Consensus 172 ~ 172 (406)
T COG0793 172 G 172 (406)
T ss_pred C
Confidence 3
No 62
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.98 E-value=2.1e-05 Score=76.10 Aligned_cols=72 Identities=31% Similarity=0.454 Sum_probs=59.4
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.+||+.+.-- ..+++|..|.++|||+++| |+.||+|++|||+.+.+.+..++...++...+. .|.|.|.|..
T Consensus 51 ~~lG~~~~~~------~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~-~v~l~v~R~g 122 (334)
T TIGR00225 51 EGIGIQVGMD------DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGT-KVSLEILRAG 122 (334)
T ss_pred EEEEEEEEEE------CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCC-EEEEEEEeCC
Confidence 5788888531 1379999999999999888 999999999999999988888888888764443 4899998874
No 63
>KOG0696|consensus
Probab=97.96 E-value=4.4e-06 Score=83.52 Aligned_cols=36 Identities=33% Similarity=0.444 Sum_probs=33.5
Q ss_pred CcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCCC
Q psy4487 280 GTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315 (315)
Q Consensus 280 ~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd~ 315 (315)
-...|.|+|.+|+||.|+|++|.+|||||+.|+||+
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~ 213 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDP 213 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCC
Confidence 355899999999999999999999999999999985
No 64
>KOG0609|consensus
Probab=97.91 E-value=4.3e-05 Score=77.90 Aligned_cols=85 Identities=21% Similarity=0.357 Sum_probs=70.7
Q ss_pred eeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487 94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED 173 (315)
Q Consensus 94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~ 173 (315)
..+.-+.+.|.. +.-||..|.--.. ..+||.+|..||.|++.|.|+.||+|++|||+++.+..-+++++
T Consensus 121 ~~vriv~i~k~~------~eplG~Tik~~e~-----~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~ 189 (542)
T KOG0609|consen 121 EAVRIVRIVKNT------GEPLGATIRVEED-----TKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQE 189 (542)
T ss_pred ceeEEEEEeecC------CCccceEEEeccC-----CccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHH
Confidence 345556677764 3679988873221 26999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEEEeC
Q psy4487 174 IIAESRQEPQVELIVSRR 191 (315)
Q Consensus 174 iLk~s~~~~~V~LvV~R~ 191 (315)
+++.+.+. |++.|.-.
T Consensus 190 ~l~~~~G~--itfkiiP~ 205 (542)
T KOG0609|consen 190 LLRNSRGS--ITFKIIPS 205 (542)
T ss_pred HHHhCCCc--EEEEEccc
Confidence 99999976 99888544
No 65
>KOG1028|consensus
Probab=97.81 E-value=3.6e-05 Score=77.32 Aligned_cols=47 Identities=26% Similarity=0.325 Sum_probs=44.9
Q ss_pred ceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCCC
Q psy4487 250 GRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315 (315)
Q Consensus 250 g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd~ 315 (315)
|.|.++|+|.+. +.+|.|.|++|++|..++.++.+|||||++|+++.
T Consensus 285 gel~~sL~Y~p~-------------------~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~ 331 (421)
T KOG1028|consen 285 GELLLSLCYLPT-------------------AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGD 331 (421)
T ss_pred ceEEEEEEeecC-------------------CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCC
Confidence 899999999999 99999999999999999999999999999999863
No 66
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.79 E-value=5.7e-05 Score=79.84 Aligned_cols=72 Identities=21% Similarity=0.302 Sum_probs=58.6
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEEC--C---EeCCCCCHHHHHHHHHhcCCCCcEEEE
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWN--G---RSMRGKSFQDVEDIIAESRQEPQVELI 187 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVN--G---~~l~g~t~~eav~iLk~s~~~~~V~Lv 187 (315)
.|+|+.+.- + +.+++|..|.+||||++++.|++||+|++|| | +++.+++.++++.+|+...+. +|.|.
T Consensus 244 ~GIGa~l~~--~----~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt-~V~Lt 316 (667)
T PRK11186 244 EGIGAVLQM--D----DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGS-KVRLE 316 (667)
T ss_pred eEEEEEEEE--e----CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCC-EEEEE
Confidence 577777642 1 1368999999999999986799999999999 4 356688999999999987764 59999
Q ss_pred EEeC
Q psy4487 188 VSRR 191 (315)
Q Consensus 188 V~R~ 191 (315)
|.|.
T Consensus 317 V~r~ 320 (667)
T PRK11186 317 ILPA 320 (667)
T ss_pred EEeC
Confidence 9874
No 67
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=97.74 E-value=8.1e-05 Score=61.88 Aligned_cols=44 Identities=32% Similarity=0.531 Sum_probs=40.5
Q ss_pred cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecC
Q psy4487 249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLP 313 (315)
Q Consensus 249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llp 313 (315)
+|+|+++|.|+.. .|.|+|++|++|+..+..+..||||++++.+
T Consensus 1 ~g~~~~~~~~~~~---------------------~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~ 44 (131)
T cd04026 1 RGRIYLKISVKDN---------------------KLTVEVREAKNLIPMDPNGLSDPYVKLKLIP 44 (131)
T ss_pred CcEEEEEEEECCC---------------------EEEEEEEEeeCCCCcCCCCCCCCcEEEEEEc
Confidence 4899999999887 8999999999999998888899999999976
No 68
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.68 E-value=0.00013 Score=72.97 Aligned_cols=61 Identities=26% Similarity=0.512 Sum_probs=52.9
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
.|++|..|.++|+|++.| |++||.|++|||+.+. +.+++.++|++.+....+.|.|.|...
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~--s~~d~~~~l~~~~~g~~v~l~v~R~g~ 422 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVS--SVAELRKVLDRAKKGGRVALLILRGGA 422 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 589999999999999877 9999999999999995 789999999876433459999988753
No 69
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.68 E-value=0.00014 Score=68.67 Aligned_cols=61 Identities=26% Similarity=0.276 Sum_probs=53.6
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
.|+.|..+.++++|++.| |+.||.|++|||+++. +.+++.+++.+.....+++|.|.|+..
T Consensus 191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~--~~~~~~~~l~~~~~~~~v~l~V~R~G~ 251 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLR--DPEQAFQALQMLREETNLTLTVERDGQ 251 (259)
T ss_pred eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCeEEEEEEECCE
Confidence 599999999999999887 9999999999999995 778888888886554569999999763
No 70
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.66 E-value=0.00014 Score=72.63 Aligned_cols=61 Identities=36% Similarity=0.589 Sum_probs=51.9
Q ss_pred CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
..|++|..|.++|+|+++| |+.||+|++|||+.+. ++.++..++........|.|.|.|+.
T Consensus 256 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~--~~~~~~~~l~~~~~g~~v~l~v~R~g 316 (428)
T TIGR02037 256 QRGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPIS--SFADLRRAIGTLKPGKKVTLGILRKG 316 (428)
T ss_pred CCceEEEEccCCCChHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 3689999999999999887 9999999999999995 77888888876544445999998865
No 71
>KOG0905|consensus
Probab=97.61 E-value=8.3e-05 Score=81.30 Aligned_cols=47 Identities=36% Similarity=0.706 Sum_probs=44.5
Q ss_pred cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
.++|.|+++|.|..+ .|.|+|+.|++|+--.+|+-.|||||+|||||
T Consensus 1510 ~iggqV~LsIsY~~~---------------------~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPd 1556 (1639)
T KOG0905|consen 1510 EIGGQVKLSISYNNG---------------------TLTIMVMHAKGLALLQDGQDPDPYVKTYLLPD 1556 (1639)
T ss_pred ccCceEEEEEEEcCc---------------------eEEEEhhhhcccccccCCCCCCcceeEEecCC
Confidence 778999999999877 89999999999999999999999999999998
No 72
>PRK10139 serine endoprotease; Provisional
Probab=97.56 E-value=0.00022 Score=72.29 Aligned_cols=59 Identities=29% Similarity=0.452 Sum_probs=52.1
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
.|++|..|.++++|++.| |++||.|++|||+.+ .++++..++|++... .+.|.|.|...
T Consensus 390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v--~~~~~~~~~l~~~~~--~v~l~v~R~g~ 448 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRV--NSIAEMRKVLAAKPA--IIALQIVRGNE 448 (455)
T ss_pred CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEc--CCHHHHHHHHHhCCC--eEEEEEEECCE
Confidence 589999999999999877 999999999999999 489999999987654 48999988753
No 73
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.56 E-value=0.00023 Score=69.70 Aligned_cols=60 Identities=30% Similarity=0.520 Sum_probs=51.3
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.|++|..|.++++|++.| |++||.|++|||+.+. +++++.+.+........|.|.|.|+.
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~g 337 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVI--GAEELMDRIAETRPGSKVMVTVLRQG 337 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 589999999999999877 9999999999999995 78888888876433345999998864
No 74
>PRK10139 serine endoprotease; Provisional
Probab=97.56 E-value=0.00027 Score=71.63 Aligned_cols=61 Identities=30% Similarity=0.446 Sum_probs=51.7
Q ss_pred CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
..|++|..|.++|+|+++| |+.||+|++|||+.+. +++++...|.......++.|.|.|..
T Consensus 289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l~V~R~G 349 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNG 349 (455)
T ss_pred CCceEEEEECCCChHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 3589999999999999877 9999999999999995 78999988876333235999998865
No 75
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.55 E-value=0.00024 Score=71.15 Aligned_cols=60 Identities=27% Similarity=0.455 Sum_probs=52.2
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
.+++|..|.++++|+++| |++||+|++|||+++. +++|+...++...+. .+.+.|.|+..
T Consensus 203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~--s~~dl~~~l~~~~~~-~v~l~v~R~g~ 262 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLR--SWTDFVSAVKENPGK-SMDIKVERNGE 262 (420)
T ss_pred cCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCC-ceEEEEEECCE
Confidence 478999999999999877 9999999999999995 789999999886553 38999988763
No 76
>PRK10942 serine endoprotease; Provisional
Probab=97.50 E-value=0.00028 Score=71.83 Aligned_cols=59 Identities=25% Similarity=0.489 Sum_probs=52.2
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
.|++|..|.++|+|++.| |++||.|++|||+.+. +++++.++++.... .+.|.|.|...
T Consensus 408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~--s~~dl~~~l~~~~~--~v~l~V~R~g~ 466 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVK--NIAELRKILDSKPS--VLALNIQRGDS 466 (473)
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCC--eEEEEEEECCE
Confidence 589999999999999877 9999999999999995 78999999988654 49999998763
No 77
>PRK10898 serine endoprotease; Provisional
Probab=97.50 E-value=0.00034 Score=68.59 Aligned_cols=60 Identities=25% Similarity=0.383 Sum_probs=50.5
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.|++|..|.++++|++.| |+.||+|++|||+.+. ++++....|........+.|.|.|..
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~--s~~~l~~~l~~~~~g~~v~l~v~R~g 338 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAI--SALETMDQVAEIRPGSVIPVVVMRDD 338 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 699999999999999877 9999999999999994 67788777866433345999998864
No 78
>PRK10942 serine endoprotease; Provisional
Probab=97.49 E-value=0.00037 Score=71.00 Aligned_cols=62 Identities=26% Similarity=0.390 Sum_probs=52.8
Q ss_pred CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
..|++|..|.++++|+++| |+.||+|++|||+.+. +++++...+........+.|.|.|...
T Consensus 310 ~~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~--s~~dl~~~l~~~~~g~~v~l~v~R~G~ 371 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDGK 371 (473)
T ss_pred CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCe
Confidence 3689999999999999877 9999999999999995 788888888775544458999988763
No 79
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.39 E-value=0.00059 Score=68.90 Aligned_cols=60 Identities=20% Similarity=0.421 Sum_probs=51.5
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
.+++|..|.++|+|+++| |++||+|++|||+.+. +++++.+.++...+. .+.+.|.|+..
T Consensus 221 ~~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~~-~v~l~v~R~g~ 280 (449)
T PRK10779 221 IEPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLT--QWQTFVTLVRDNPGK-PLALEIERQGS 280 (449)
T ss_pred cCcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCC-EEEEEEEECCE
Confidence 358999999999999877 9999999999999994 889999999875443 48999988763
No 80
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.29 E-value=0.00049 Score=69.47 Aligned_cols=60 Identities=10% Similarity=0.135 Sum_probs=50.8
Q ss_pred CeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 131 gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
..+|+.|.++|||+++| |+.||.|++|||+.+. ++++....+.......++.+.|.|+..
T Consensus 127 ~~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~--~~~~l~~~v~~~~~g~~v~v~v~R~gk 186 (449)
T PRK10779 127 RPVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETP--DWDAVRLALVSKIGDESTTITVAPFGS 186 (449)
T ss_pred CccccccCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhhccCCceEEEEEeCCc
Confidence 45799999999999887 9999999999999996 678888777666554569999998764
No 81
>KOG3938|consensus
Probab=97.27 E-value=0.00046 Score=65.34 Aligned_cols=72 Identities=26% Similarity=0.435 Sum_probs=62.1
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEE
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIV 188 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV 188 (315)
.+-||+.|.- +|-.-+||.+|.+||.-++.-.+++||.|-+|||.++-|..|-||..+|++.+.....+|.+
T Consensus 136 edalGlTITD-----NG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrL 207 (334)
T KOG3938|consen 136 EDALGLTITD-----NGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRL 207 (334)
T ss_pred ccccceEEee-----CCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEe
Confidence 4689999973 34467999999999999999899999999999999999999999999999987764455443
No 82
>KOG3605|consensus
Probab=97.07 E-value=0.00048 Score=71.72 Aligned_cols=62 Identities=24% Similarity=0.451 Sum_probs=54.8
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEE
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~L 186 (315)
---|||+|.-|. |-++..||.|++ |.+++|.+|+||||+++....|+.++++|..+-++ |.+
T Consensus 748 kyQLGFSVQNGi----------ICSLlRGGIAER-GGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVGE--IhM 809 (829)
T KOG3605|consen 748 RYQLGFSVQNGI----------ICSLLRGGIAER-GGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVGE--IHM 809 (829)
T ss_pred hhhccceeeCcE----------eehhhcccchhc-cCceeeeeEEEECCceEEeccHHHHHHHHHHhhhh--hhh
Confidence 457999998764 889999999998 55999999999999999999999999999998876 544
No 83
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=96.90 E-value=0.0026 Score=54.83 Aligned_cols=81 Identities=21% Similarity=0.248 Sum_probs=56.2
Q ss_pred CCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCC-CCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEE
Q psy4487 110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLA-GDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIV 188 (315)
Q Consensus 110 ~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~-GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV 188 (315)
++..-||++|.=-........++-|-+|.|+|||+++| |++ .|.|+.+++..+. ..++..++++...+. ++.|.|
T Consensus 23 ~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~--~~~~l~~~v~~~~~~-~l~L~V 98 (138)
T PF04495_consen 23 GGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLD--DEDDLFELVEANENK-PLQLYV 98 (138)
T ss_dssp SSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE----STCHHHHHHHHTTTS--EEEEE
T ss_pred CCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecC--CHHHHHHHHHHcCCC-cEEEEE
Confidence 45678899987444333456789999999999999988 887 6999999998887 456888888877664 488888
Q ss_pred EeCCCC
Q psy4487 189 SRRIQP 194 (315)
Q Consensus 189 ~R~~~~ 194 (315)
-.....
T Consensus 99 yns~~~ 104 (138)
T PF04495_consen 99 YNSKTD 104 (138)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 655433
No 84
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=96.80 E-value=0.0028 Score=63.64 Aligned_cols=58 Identities=29% Similarity=0.402 Sum_probs=49.7
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.+++|..|.++|||+++| |+.||.|+++||+.+. ++.++...+....+. +.+.|.|+.
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~--~~~dl~~~ia~~~~~--v~~~I~r~g 185 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIP--GFKDVRQQIADIAGE--PMVEILAER 185 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhhccc--ceEEEEEec
Confidence 578999999999999876 9999999999999994 778888888776644 888887764
No 85
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=96.66 E-value=0.0025 Score=55.62 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=32.8
Q ss_pred cCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 278 DSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 278 ~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
......|.|+|++|++|++++..+.+||||+++|.++
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~ 60 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPA 60 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEccc
Confidence 3446789999999999999999999999999999864
No 86
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=96.58 E-value=0.0038 Score=63.02 Aligned_cols=49 Identities=33% Similarity=0.424 Sum_probs=41.0
Q ss_pred EEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEE
Q psy4487 134 IEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVS 189 (315)
Q Consensus 134 Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~ 189 (315)
|..|.|+|+|+++| |++||+|++|||+.+. ++.++...+.. . .+.|.|.
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~--Dw~D~~~~l~~--e--~l~L~V~ 50 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPR--DLIDYQFLCAD--E--ELELEVL 50 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHhcC--C--cEEEEEE
Confidence 77899999999887 9999999999999994 78887777742 2 3888886
No 87
>KOG1013|consensus
Probab=96.52 E-value=0.0027 Score=61.83 Aligned_cols=49 Identities=27% Similarity=0.353 Sum_probs=45.9
Q ss_pred cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
..+|.|.++|.|++. +..|.|+++.|..|...|.++.+||||+.||-||
T Consensus 217 E~rg~i~isl~~~s~-------------------~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pd 265 (362)
T KOG1013|consen 217 EERGAILISLAYSST-------------------TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPD 265 (362)
T ss_pred hhccceeeeeccCcC-------------------CCceEEEEEEeeeeeccccCCCCCccceeecCCC
Confidence 456899999999999 8899999999999999999999999999999987
No 88
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=96.50 E-value=0.012 Score=58.97 Aligned_cols=71 Identities=23% Similarity=0.530 Sum_probs=53.1
Q ss_pred CCCccceEEEcCcCCCCCCCCeEEEee--------cCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCC
Q psy4487 111 ASSTLGIKVIGGKLLEDGTRGAIIEKV--------KKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEP 182 (315)
Q Consensus 111 ~~~gLGfsIvGGk~~~~g~~gi~Is~V--------~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~ 182 (315)
++..+|+.+.- .|++|-.. ..++||+.+| |+.||.|++|||..+. +++|+.++++...+.
T Consensus 94 gG~~iGI~l~t--------~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~--s~~DL~~iL~~~~g~- 161 (402)
T TIGR02860 94 GGQSIGVKLNT--------KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIK--NMDDLANLINKAGGE- 161 (402)
T ss_pred CCEEEEEEEec--------CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCC-
Confidence 45667776631 25555332 2368999766 9999999999999995 889999999887653
Q ss_pred cEEEEEEeCCC
Q psy4487 183 QVELIVSRRIQ 193 (315)
Q Consensus 183 ~V~LvV~R~~~ 193 (315)
.+.|.|.|+..
T Consensus 162 ~V~LtV~R~Ge 172 (402)
T TIGR02860 162 KLTLTIERGGK 172 (402)
T ss_pred eEEEEEEECCE
Confidence 48999988753
No 89
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=96.07 E-value=0.0094 Score=50.60 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=29.3
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCCeEEEeec
Q psy4487 281 TLRLVVTLMCAASLVPRSNGQPRCPYAKIYLL 312 (315)
Q Consensus 281 ~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~ll 312 (315)
-..|.|+|++|++|++.+..+.+||||++++.
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~ 45 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG 45 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC
Confidence 56899999999999999988999999999874
No 90
>KOG0606|consensus
Probab=96.07 E-value=0.018 Score=63.53 Aligned_cols=83 Identities=25% Similarity=0.356 Sum_probs=63.5
Q ss_pred EEEEeccCCCCCCCCCccceEE------EcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHH
Q psy4487 98 HMILRKSGDRYPSASSTLGIKV------IGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171 (315)
Q Consensus 98 ~v~L~k~~~~~~~~~~gLGfsI------vGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ea 171 (315)
.|++++. +.+|||.+ +|+++.-. .--.|..|.+|++|...| |++||.|+.|||..+.++.|.|+
T Consensus 629 pI~i~~~-------~~~yGft~~airVy~Gd~d~yt--vhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev 698 (1205)
T KOG0606|consen 629 PITIHFS-------GKKYGFTLRAIRVYMGDKDVYT--VHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEV 698 (1205)
T ss_pred ceeeecc-------ccccCceeeeEEEecCCcccce--eeeeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHH
Confidence 3555554 47888764 37766322 123589999999998766 99999999999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEEeCC
Q psy4487 172 EDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 172 v~iLk~s~~~~~V~LvV~R~~ 192 (315)
+++|.+.+.. |.+.+.--.
T Consensus 699 ~~Lll~~gn~--v~~~ttple 717 (1205)
T KOG0606|consen 699 MELLLKSGNK--VTLRTTPLE 717 (1205)
T ss_pred HHHHHhcCCe--eEEEeeccc
Confidence 9999988765 666654433
No 91
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=96.02 E-value=0.028 Score=54.69 Aligned_cols=62 Identities=24% Similarity=0.388 Sum_probs=54.2
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCCCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPK 195 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~~~ 195 (315)
.|+|+..+..+++|. |.|..||.|++|||+.+. +.+|.+..++..+-..+|++.++|.....
T Consensus 130 ~gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~--s~~e~i~~v~~~k~Gd~VtI~~~r~~~~~ 191 (342)
T COG3480 130 AGVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFT--SSDELIDYVSSKKPGDEVTIDYERHNETP 191 (342)
T ss_pred eeEEEEEccCCcchh--ceeccCCeEEeeCCeecC--CHHHHHHHHhccCCCCeEEEEEEeccCCC
Confidence 589999999999998 889999999999999995 88999999988766566999999866544
No 92
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.028 Score=54.51 Aligned_cols=60 Identities=33% Similarity=0.500 Sum_probs=51.7
Q ss_pred CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487 129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~ 191 (315)
..|++|..|.+++||++.| ++.||.|+++||..+. +..+....+........+.+.+.|+
T Consensus 269 ~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~--~~~~l~~~v~~~~~g~~v~~~~~r~ 328 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVA--SLSDLVAAVASNRPGDEVALKLLRG 328 (347)
T ss_pred CCceEEEecCCCChHHHcC-CCCCCEEEEECCEEcc--CHHHHHHHHhccCCCCEEEEEEEEC
Confidence 4579999999999999887 9999999999999995 7778888787766555699999888
No 93
>KOG3129|consensus
Probab=95.82 E-value=0.025 Score=52.06 Aligned_cols=65 Identities=25% Similarity=0.389 Sum_probs=48.3
Q ss_pred CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCC-HHHHHHHHHhcCCCCcEEEEEEeCCCCC
Q psy4487 129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKS-FQDVEDIIAESRQEPQVELIVSRRIQPK 195 (315)
Q Consensus 129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t-~~eav~iLk~s~~~~~V~LvV~R~~~~~ 195 (315)
..-++|..|.|+|||+.+| |+.||+|+.+..+.-.+.. +..+....+...+.. |.+.|.|.....
T Consensus 138 ~~Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~-v~v~v~R~g~~v 203 (231)
T KOG3129|consen 138 RPFAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQI-VSVTVIREGQKV 203 (231)
T ss_pred cceEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcc-eeEEEecCCCEE
Confidence 3468999999999999766 9999999999887665544 556666666555532 777887776543
No 94
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=95.64 E-value=0.032 Score=53.44 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=42.4
Q ss_pred eecCCChhc--ccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 136 KVKKGSPAD--LEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 136 ~V~pGgpA~--~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
+|.||..++ ...+|+.||.+++|||.++. .-+++.+++++.....++.|.|+|+..
T Consensus 210 rl~Pgkd~~lF~~~GLq~GDva~sING~dL~--D~~qa~~l~~~L~~~tei~ltVeRdGq 267 (276)
T PRK09681 210 AVKPGADRSLFDASGFKEGDIAIALNQQDFT--DPRAMIALMRQLPSMDSIQLTVLRKGA 267 (276)
T ss_pred EECCCCcHHHHHHcCCCCCCEEEEeCCeeCC--CHHHHHHHHHHhccCCeEEEEEEECCE
Confidence 455665442 23449999999999999997 556777777777776779999999864
No 95
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=95.55 E-value=0.025 Score=45.29 Aligned_cols=61 Identities=25% Similarity=0.363 Sum_probs=38.4
Q ss_pred CCeEEEeecCC--------ChhcccC-CCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 130 RGAIIEKVKKG--------SPADLEG-HLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 130 ~gi~Is~V~pG--------gpA~~~G-~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
.+..|.+|.+| ||..+-| .+++||.|++|||+.+. .-.....+|.+..+ .+|.|.|.+...
T Consensus 12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~--~~~~~~~lL~~~ag-k~V~Ltv~~~~~ 81 (88)
T PF14685_consen 12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVT--ADANPYRLLEGKAG-KQVLLTVNRKPG 81 (88)
T ss_dssp TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-B--TTB-HHHHHHTTTT-SEEEEEEE-STT
T ss_pred CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECC--CCCCHHHHhcccCC-CEEEEEEecCCC
Confidence 46789999987 4444433 46699999999999996 33456777777655 359999988654
No 96
>KOG1738|consensus
Probab=95.30 E-value=0.023 Score=59.29 Aligned_cols=76 Identities=26% Similarity=0.405 Sum_probs=64.1
Q ss_pred CCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEE-
Q psy4487 110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIV- 188 (315)
Q Consensus 110 ~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV- 188 (315)
+...|||+-|---- +..-+|+.+.++++|+....|..||+|++||+.-+.+..+.-+++.++..... |.++|
T Consensus 210 kp~eglg~~I~Ssy-----dg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sg--i~l~lk 282 (638)
T KOG1738|consen 210 SPSEGLGLYIDSSY-----DGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAG--IELTLK 282 (638)
T ss_pred CcccCCceEEeeec-----CCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCccc--ceeeee
Confidence 45679999987433 34678999999999999999999999999999999999999999999998876 77666
Q ss_pred EeCC
Q psy4487 189 SRRI 192 (315)
Q Consensus 189 ~R~~ 192 (315)
.|..
T Consensus 283 Krp~ 286 (638)
T KOG1738|consen 283 KRPV 286 (638)
T ss_pred ccCC
Confidence 4444
No 97
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=95.17 E-value=0.025 Score=41.91 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=27.7
Q ss_pred EEEEEEeecCCCCCCCCCCCCCeEEEeecC
Q psy4487 284 LVVTLMCAASLVPRSNGQPRCPYAKIYLLP 313 (315)
Q Consensus 284 L~v~i~~a~~l~~~~~~~~~~pyvk~~llp 313 (315)
|.|+|++|++|+.++..+..+|||++++..
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~ 30 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNG 30 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEET
T ss_pred CEEEEEEEECCCCcccCCcccccceeecce
Confidence 789999999999988888999999999875
No 98
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=94.75 E-value=0.046 Score=46.20 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=26.5
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCCeEEEeec
Q psy4487 281 TLRLVVTLMCAASLVPRSNGQPRCPYAKIYLL 312 (315)
Q Consensus 281 ~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~ll 312 (315)
..+|.|+|++|++|+. +..+..|||||+++.
T Consensus 27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~ 57 (127)
T cd04032 27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFG 57 (127)
T ss_pred cEEEEEEEEECCCCCc-CcCCCCCeEEEEEEC
Confidence 5689999999999984 566778999999973
No 99
>KOG1328|consensus
Probab=94.20 E-value=0.038 Score=58.82 Aligned_cols=41 Identities=24% Similarity=0.490 Sum_probs=35.7
Q ss_pred eeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 274 KFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 274 ~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
.-+|+.|...|+|-|+.|+++.|-|.+|.+||||-|-|+|.
T Consensus 939 r~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~ 979 (1103)
T KOG1328|consen 939 RAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPK 979 (1103)
T ss_pred EEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccc
Confidence 33333448999999999999999999999999999999985
No 100
>KOG1421|consensus
Probab=93.52 E-value=0.16 Score=54.04 Aligned_cols=79 Identities=27% Similarity=0.429 Sum_probs=57.4
Q ss_pred CCCCccceE-----EEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcE
Q psy4487 110 SASSTLGIK-----VIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQV 184 (315)
Q Consensus 110 ~~~~gLGfs-----IvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V 184 (315)
+....||++ ++=-++ .....=.+|..|.++|+|+. .|++||.++.||++.+ ..+.++.++|.+.-+. .+
T Consensus 279 de~rrlGL~sE~eqv~r~k~-P~~tgmLvV~~vL~~gpa~k--~Le~GDillavN~t~l--~df~~l~~iLDegvgk-~l 352 (955)
T KOG1421|consen 279 DECRRLGLSSEWEQVVRTKF-PERTGMLVVETVLPEGPAEK--KLEPGDILLAVNSTCL--NDFEALEQILDEGVGK-NL 352 (955)
T ss_pred HHHHhcCCcHHHHHHHHhcC-cccceeEEEEEeccCCchhh--ccCCCcEEEEEcceeh--HHHHHHHHHHhhccCc-eE
Confidence 445678876 221122 22223467889999999995 4999999999999888 4778888888776553 49
Q ss_pred EEEEEeCCCC
Q psy4487 185 ELIVSRRIQP 194 (315)
Q Consensus 185 ~LvV~R~~~~ 194 (315)
+|.|.|....
T Consensus 353 ~LtI~Rggqe 362 (955)
T KOG1421|consen 353 ELTIQRGGQE 362 (955)
T ss_pred EEEEEeCCEE
Confidence 9999998754
No 101
>KOG3532|consensus
Probab=93.46 E-value=0.18 Score=53.57 Aligned_cols=61 Identities=20% Similarity=0.347 Sum_probs=52.5
Q ss_pred CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 127 ~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.+...+-|..|.++++|+++. +++||.+++|||+++. +-.++...++...+. |..++.|..
T Consensus 395 ~~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~--~~~l~~~~~ 455 (1051)
T KOG3532|consen 395 NTNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTTGD--LTVLVERSL 455 (1051)
T ss_pred CCceEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcccc--eEEEEeecc
Confidence 345678899999999999866 9999999999999995 888999999998876 887777755
No 102
>KOG1320|consensus
Probab=93.33 E-value=0.24 Score=50.81 Aligned_cols=62 Identities=24% Similarity=0.387 Sum_probs=50.3
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~~ 194 (315)
.+++|..|+++++|+. +.+..||+|+.|||+.+. ...++.++|..+....+|.++..|....
T Consensus 398 q~v~is~Vlp~~~~~~-~~~~~g~~V~~vng~~V~--n~~~l~~~i~~~~~~~~v~vl~~~~~e~ 459 (473)
T KOG1320|consen 398 QLVLVSQVLPGSINGG-YGLKPGDQVVKVNGKPVK--NLKHLYELIEECSTEDKVAVLDRRSAED 459 (473)
T ss_pred eEEEEEEeccCCCccc-ccccCCCEEEEECCEEee--chHHHHHHHHhcCcCceEEEEEecCccc
Confidence 4799999999999995 559999999999999996 4567888998887655577766665533
No 103
>KOG1013|consensus
Probab=92.82 E-value=0.037 Score=54.10 Aligned_cols=49 Identities=31% Similarity=0.366 Sum_probs=45.0
Q ss_pred cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
+.+|.+.+.+.|+.. ...|..+|..|.+|.|++.++..|||||+.|||-
T Consensus 77 t~lg~~~~~~~y~~~-------------------~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpg 125 (362)
T KOG1013|consen 77 TTLGALEFELLYDSE-------------------SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPG 125 (362)
T ss_pred hhccchhhhhhhhhh-------------------hhhcceeechhcccchhhhhhhcchHHhhhcccc
Confidence 366889999999988 8889999999999999999999999999999984
No 104
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=92.67 E-value=0.057 Score=55.67 Aligned_cols=43 Identities=35% Similarity=0.415 Sum_probs=35.8
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCE
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGR 161 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~ 161 (315)
...||+++.- + .....|+.|.++|||..+| |.+||+|+.|||.
T Consensus 450 ~~~LGl~v~~--~----~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~ 492 (558)
T COG3975 450 AYYLGLKVKS--E----GGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI 492 (558)
T ss_pred CcccceEecc--c----CCeeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence 3578888752 1 1257899999999999988 9999999999999
No 105
>KOG4407|consensus
Probab=92.09 E-value=0.15 Score=57.36 Aligned_cols=55 Identities=24% Similarity=0.442 Sum_probs=49.2
Q ss_pred CeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEE
Q psy4487 131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIV 188 (315)
Q Consensus 131 gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV 188 (315)
-|||..|.+.++|+... |+.||+|+.||...+.++.+.+++.+|++.... +.+.|
T Consensus 144 T~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~--~~~~~ 198 (1973)
T KOG4407|consen 144 TIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAV--LTLHV 198 (1973)
T ss_pred hhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCCCC--CCcee
Confidence 48999999999999765 999999999999999999999999999998866 55554
No 106
>KOG2060|consensus
Probab=91.22 E-value=0.2 Score=49.76 Aligned_cols=45 Identities=33% Similarity=0.537 Sum_probs=36.1
Q ss_pred cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCC-CCCCCCeEEEeecCC
Q psy4487 249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSN-GQPRCPYAKIYLLPD 314 (315)
Q Consensus 249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~-~~~~~pyvk~~llpd 314 (315)
-|+||+.++-..+ .|.|-|+.|++|.++.- +....||||+|||+.
T Consensus 257 mg~iq~~~~d~~g---------------------~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~ 302 (405)
T KOG2060|consen 257 MGDIQIALMDSKG---------------------DLEVEIIRARGLVVKPGSKSLPAPYVKVYLLEN 302 (405)
T ss_pred cccchhhhhcccC---------------------ceeEEEEecccccccCCcccccCceeEEEEcCC
Confidence 4778887775444 89999999999988764 336799999999984
No 107
>KOG1945|consensus
Probab=90.51 E-value=0.21 Score=49.21 Aligned_cols=72 Identities=19% Similarity=0.345 Sum_probs=61.2
Q ss_pred CCCCccceEEEc---CcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCC
Q psy4487 110 SASSTLGIKVIG---GKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQE 181 (315)
Q Consensus 110 ~~~~gLGfsIvG---Gk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~ 181 (315)
++..|+|+.+.| |++..-...+|++.+..+|+.-++.|...+-|.+.++.+..+..+.+....++.+.+-..
T Consensus 107 ~~~~g~g~~~~~~~~gkk~~~~e~~~~~~sa~sg~~~~r~g~~sved~~~s~~~k~lp~vp~s~~~es~g~S~~~ 181 (377)
T KOG1945|consen 107 KGAEGLGVSIIGMGVGKKSGLEELGIFVKSATSGGAVHRDGRWSVEDVEVSVDSKSLPGVPFSWFAESLGGSSSR 181 (377)
T ss_pred CCcCCCCccccccccchhccchhhcceeecccccccccccccccccccccccccCCCCCcchhhhhcccccchhc
Confidence 445788888777 444455678999999999999999999999999999999999999999999988777654
No 108
>KOG4371|consensus
Probab=90.09 E-value=0.36 Score=53.41 Aligned_cols=84 Identities=25% Similarity=0.463 Sum_probs=65.9
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
+|..|+|.+.. .++|+.+.-... ..|+||..+...+.|...|.++.||++...+|.++.+.+-....+.
T Consensus 1246 l~~~~~~~~p~-------~~~~~~~~~~~~----s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~ 1314 (1332)
T KOG4371|consen 1246 LISVMLLKKPM-------ATLGLSLAKRTM----SDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEK 1314 (1332)
T ss_pred hhhheeeeccc-------ccccccccccCc----CCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHH
Confidence 34445555543 678888775433 4689999999999999999999999999999999999998888888
Q ss_pred HHhcCCCCcEEEEEEeC
Q psy4487 175 IAESRQEPQVELIVSRR 191 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~ 191 (315)
++-..+. |.|.+.|.
T Consensus 1315 ~~~v~~p--~~~~~~~~ 1329 (1332)
T KOG4371|consen 1315 LKLVQGP--VQITVTRE 1329 (1332)
T ss_pred hhhccCc--hhheehhh
Confidence 8766555 66666654
No 109
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=89.29 E-value=0.95 Score=42.79 Aligned_cols=63 Identities=27% Similarity=0.312 Sum_probs=45.9
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.-+|+++.-|++ ++.-+..| |+.||..+++|+.+++ .-+++..+++.......+.|+|.|+.
T Consensus 205 ki~Gyr~~pgkd---------------~slF~~sg-lq~GDIavaiNnldlt--dp~~m~~llq~l~~m~s~qlTv~R~G 266 (275)
T COG3031 205 KIEGYRFEPGKD---------------GSLFYKSG-LQRGDIAVAINNLDLT--DPEDMFRLLQMLRNMPSLQLTVIRRG 266 (275)
T ss_pred ceEEEEecCCCC---------------cchhhhhc-CCCcceEEEecCcccC--CHHHHHHHHHhhhcCcceEEEEEecC
Confidence 567777766654 33445455 9999999999999995 55666677776666566899998876
Q ss_pred C
Q psy4487 193 Q 193 (315)
Q Consensus 193 ~ 193 (315)
.
T Consensus 267 ~ 267 (275)
T COG3031 267 K 267 (275)
T ss_pred c
Confidence 3
No 110
>PF12812 PDZ_1: PDZ-like domain
Probab=86.79 E-value=2.4 Score=33.03 Aligned_cols=47 Identities=21% Similarity=0.298 Sum_probs=38.5
Q ss_pred CeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCC
Q psy4487 131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQ 180 (315)
Q Consensus 131 gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~ 180 (315)
+.++.....|+++.. +.+..|-.|.+|||+++. +.++.++++++.++
T Consensus 31 ~gv~v~~~~g~~~~~-~~i~~g~iI~~Vn~kpt~--~Ld~f~~vvk~ipd 77 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFA-GGISKGFIITSVNGKPTP--DLDDFIKVVKKIPD 77 (78)
T ss_pred CEEEEEecCCChhhh-CCCCCCeEEEeECCcCCc--CHHHHHHHHHhCCC
Confidence 456667788899884 559999999999999995 77888888887654
No 111
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=84.21 E-value=3.5 Score=39.98 Aligned_cols=56 Identities=25% Similarity=0.509 Sum_probs=46.3
Q ss_pred eEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCC--cEEEEEEe
Q psy4487 132 AIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEP--QVELIVSR 190 (315)
Q Consensus 132 i~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~--~V~LvV~R 190 (315)
.++..+..+++|...+ +++||+++++|+..+ .+++++...+....... .+.+.+.|
T Consensus 131 ~~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 131 PVVGEVAPKSAAALAG-LRPGDRIVAVDGEKV--ASWDDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred CeeeecCCCCHHHHcC-CCCCCEEEeECCEEc--cCHHHHHHHHHhccCCcccceEEEEEe
Confidence 4466899999999887 999999999999999 48888888887766653 26777788
No 112
>KOG3834|consensus
Probab=73.54 E-value=5.1 Score=40.77 Aligned_cols=63 Identities=22% Similarity=0.287 Sum_probs=47.6
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCCCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPK 195 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~~~ 195 (315)
.|..|-+|..+++|+++|-.-.-|.|++|||+.|. ...+.....++..-.. |+|+|--.+...
T Consensus 15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~-~dnd~Lk~llk~~sek--Vkltv~n~kt~~ 77 (462)
T KOG3834|consen 15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLN-KDNDTLKALLKANSEK--VKLTVYNSKTQE 77 (462)
T ss_pred eeEEEEEeecCChHHhcCcchhhhhhheeCccccc-CchHHHHHHHHhcccc--eEEEEEecccce
Confidence 47889999999999999966668999999999996 4445555555555433 999886555433
No 113
>KOG4407|consensus
Probab=72.80 E-value=3.1 Score=47.53 Aligned_cols=46 Identities=7% Similarity=-0.078 Sum_probs=35.9
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE 177 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~ 177 (315)
.-+++..+..++++...| +..||.|.-|||....+.| ..+.-.+++
T Consensus 96 ~s~~~~Q~~s~~~~~nsG-~~s~~~v~~itG~e~~~~T-S~~~~~vk~ 141 (1973)
T KOG4407|consen 96 VSTNWPQEASSAAGSNSG-SSSSVGVAGITGLEPTSPT-SLPPYQVKA 141 (1973)
T ss_pred cccccchhcccCcccccC-cccccceeeecccccCCCc-cccHHHHhh
Confidence 347788899999999776 9999999999999888777 444444443
No 114
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=63.71 E-value=7.8 Score=43.82 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=29.4
Q ss_pred CcceEEEEEEeecCCCCCCCCCCCCCeEEEee
Q psy4487 280 GTLRLVVTLMCAASLVPRSNGQPRCPYAKIYL 311 (315)
Q Consensus 280 ~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~l 311 (315)
|...|.|++..|.+|+..+.++.+||||+++|
T Consensus 1038 nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~l 1069 (1227)
T COG5038 1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFL 1069 (1227)
T ss_pred ccCcEEEEEeccCCCcccccCCCCCceEEEEe
Confidence 45679999999999999999999999999987
No 115
>KOG0792|consensus
Probab=60.03 E-value=4.8 Score=44.99 Aligned_cols=69 Identities=26% Similarity=0.316 Sum_probs=56.8
Q ss_pred CCccceEEEcCcCCC--CCCCCeEEEeec-------------CCChhcc-cCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 112 SSTLGIKVIGGKLLE--DGTRGAIIEKVK-------------KGSPADL-EGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~--~g~~gi~Is~V~-------------pGgpA~~-~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
..-+||.+.||.+.. ....+..++++. |++.|+. .-.+..||+++.|||.......|+.++..|
T Consensus 715 ~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~i 794 (1144)
T KOG0792|consen 715 PGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLI 794 (1144)
T ss_pred CccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHH
Confidence 568999999998763 233567788888 8888865 345778999999999999999999999999
Q ss_pred HhcCC
Q psy4487 176 AESRQ 180 (315)
Q Consensus 176 k~s~~ 180 (315)
+....
T Consensus 795 rs~r~ 799 (1144)
T KOG0792|consen 795 RSPRE 799 (1144)
T ss_pred hhhhh
Confidence 87655
No 116
>KOG4371|consensus
Probab=56.40 E-value=8.9 Score=43.03 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=53.3
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
..||..|.--- .-..|+...-.+.-. --.|+.||.++-+||+-+++.-|.+|+..++..++. |.|-|.|+.
T Consensus 1158 ~~l~~~~a~~~------~~~~~~~~~~~~~~~-~pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~--~~~~~~r~~ 1228 (1332)
T KOG4371|consen 1158 GSLGVQIASLS------GRVCIKQLTSEPAIS-HPDIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDR--VVLGVQRPP 1228 (1332)
T ss_pred CCCCceeccCc------cceehhhcccCCCCC-CCCcchhhhhhhccceeeechhhHHHHHHHhccCce--EEEEeecCC
Confidence 56787765311 122344444333333 245999999999999999999999999999998887 999999987
Q ss_pred CC
Q psy4487 193 QP 194 (315)
Q Consensus 193 ~~ 194 (315)
..
T Consensus 1229 ~~ 1230 (1332)
T KOG4371|consen 1229 PA 1230 (1332)
T ss_pred cc
Confidence 44
No 117
>KOG1326|consensus
Probab=56.36 E-value=11 Score=42.07 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=27.7
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCCeEEEee
Q psy4487 281 TLRLVVTLMCAASLVPRSNGQPRCPYAKIYL 311 (315)
Q Consensus 281 ~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~l 311 (315)
.....|.+++|.+|.|.|.+|..|||||+.|
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~l 642 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLL 642 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeee
Confidence 4456799999999999999999999999976
No 118
>KOG1703|consensus
Probab=55.75 E-value=5.8 Score=40.68 Aligned_cols=76 Identities=21% Similarity=0.264 Sum_probs=64.0
Q ss_pred ccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 114 TLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 114 gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
.+||++.|| ++. ..+-|..+.+++.++... +..+|.+..++|..-..++|.++...++..... ..+.|.|...
T Consensus 9 ~~~~r~~~~-~~~---~~l~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~r~~~ 81 (479)
T KOG1703|consen 9 PWGFRLQGG-DFL---QPLRILRVTPGGKAADAE-LDPGDIIAAIDGENEETMTHLEAQNKIKGSGSQ--LALTLSRSET 81 (479)
T ss_pred Cceeeeccc-ccc---cccceeccCCCCcccccc-ccccccccccccccccccccccccCcccccccc--cccccccccc
Confidence 688888876 332 358899999999999655 999999999999999999999999999888876 8888888765
Q ss_pred CCC
Q psy4487 194 PKY 196 (315)
Q Consensus 194 ~~p 196 (315)
..+
T Consensus 82 ~~~ 84 (479)
T KOG1703|consen 82 SSP 84 (479)
T ss_pred ccc
Confidence 554
No 119
>KOG1011|consensus
Probab=48.00 E-value=19 Score=38.86 Aligned_cols=29 Identities=21% Similarity=0.526 Sum_probs=26.1
Q ss_pred ceEEEEEEeecCCCCCCCCCCCCCeEEEe
Q psy4487 282 LRLVVTLMCAASLVPRSNGQPRCPYAKIY 310 (315)
Q Consensus 282 ~~L~v~i~~a~~l~~~~~~~~~~pyvk~~ 310 (315)
..++++++||.+|..++..|.+||||-..
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~q 323 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQ 323 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEe
Confidence 35899999999999999999999999764
No 120
>KOG1421|consensus
Probab=45.01 E-value=46 Score=36.22 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=45.9
Q ss_pred CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCC
Q psy4487 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEP 182 (315)
Q Consensus 127 ~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~ 182 (315)
.-..|+|++....|+||.+ + |++-..|..|||+.+ .++++-+.+|+...+..
T Consensus 859 dlp~gvyvt~rg~gspalq-~-l~aa~fitavng~~t--~~lddf~~~~~~ipdns 910 (955)
T KOG1421|consen 859 DLPEGVYVTSRGYGSPALQ-M-LRAAHFITAVNGHDT--NTLDDFYHMLLEIPDNS 910 (955)
T ss_pred ccCCceEEeecccCChhHh-h-cchheeEEEeccccc--CcHHHHHHHHhhCCCCc
Confidence 3447999999999999997 4 999999999999988 68999999999988763
No 121
>KOG3834|consensus
Probab=42.94 E-value=1.2e+02 Score=31.23 Aligned_cols=73 Identities=21% Similarity=0.168 Sum_probs=47.2
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEE-CCEeCCCCCHHHHHHHHHhcCCCCcEEEEEE
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEW-NGRSMRGKSFQDVEDIIAESRQEPQVELIVS 189 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeV-NG~~l~g~t~~eav~iLk~s~~~~~V~LvV~ 189 (315)
.-||++|.=-.+....+.-..|-+|.+.++|+++|...-+|-|+-+ |.+.- ..++...+|....... +.|.|-
T Consensus 92 qllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~---~~eDl~~lIeshe~kp-LklyVY 165 (462)
T KOG3834|consen 92 QLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMH---EEEDLFTLIESHEGKP-LKLYVY 165 (462)
T ss_pred cccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhhcc---chHHHHHHHHhccCCC-cceeEe
Confidence 3588887521111122344668899999999999854578999876 66544 6677777775544432 677663
No 122
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=40.06 E-value=28 Score=42.09 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=24.9
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCCeEEEeec
Q psy4487 281 TLRLVVTLMCAASLVPRSNGQPRCPYAKIYLL 312 (315)
Q Consensus 281 ~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~ll 312 (315)
-..|.|+|++|.||. + ..+.+||||++.+=
T Consensus 1979 ~G~L~V~V~~a~nl~-~-~~~~sdPyv~l~~g 2008 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK-Q-SMGNTNAFCKLTLG 2008 (2102)
T ss_pred CcceEEEEeeccccc-c-ccCCCCCeEEEEEC
Confidence 448999999999998 4 35689999999763
No 123
>PTZ00173 60S ribosomal protein L10; Provisional
Probab=38.77 E-value=61 Score=30.16 Aligned_cols=46 Identities=7% Similarity=0.146 Sum_probs=33.9
Q ss_pred CCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCC--CCcEEEEEEeCCCCC
Q psy4487 147 GHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQ--EPQVELIVSRRIQPK 195 (315)
Q Consensus 147 G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~--~~~V~LvV~R~~~~~ 195 (315)
.++++|..|++|.+... ..+.|.++|+.+.. .....|++.+.+.-.
T Consensus 127 ArVk~Gqiifei~~~~~---~~~~AkeALrrA~~KlP~~~kIv~~~~wgft 174 (213)
T PTZ00173 127 ARVRIGQILLSIRTKEA---YVPQAIEALRRAKYKFPGRQKIVVSNKWGFT 174 (213)
T ss_pred EEECcCCEEEEEecccC---CHHHHHHHHHHhcccCCCeEEEEEecccCcc
Confidence 34788999999988654 67888888887643 223778888887654
No 124
>KOG2921|consensus
Probab=36.05 E-value=64 Score=32.92 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=36.9
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE 177 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~ 177 (315)
.|+.|..|...||+--..+|.+||.|.++||.+++ +-++=.+.++.
T Consensus 220 ~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~--~v~dW~ecl~t 265 (484)
T KOG2921|consen 220 EGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVH--KVSDWLECLAT 265 (484)
T ss_pred ceEEEEeccccCCCcCcccCCccceEEecCCcccC--CHHHHHHHHHh
Confidence 47899999999999876679999999999999996 44455555544
No 125
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=34.65 E-value=72 Score=28.67 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=36.5
Q ss_pred cCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCC-CcEEEEEEeC
Q psy4487 146 EGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQE-PQVELIVSRR 191 (315)
Q Consensus 146 ~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~-~~V~LvV~R~ 191 (315)
.|.+..||+|+=|+++-.+|-|..++++++++++.. ..+-.+|.|.
T Consensus 116 ~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~ 162 (187)
T PRK13810 116 VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDRE 162 (187)
T ss_pred EccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECC
Confidence 466889999999999999999999999999998764 1133444554
No 126
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=29.55 E-value=83 Score=28.59 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=23.4
Q ss_pred CeEEEeecCCChhcccCCCCCCCEEEEE
Q psy4487 131 GAIIEKVKKGSPADLEGHLLAGDQVIEW 158 (315)
Q Consensus 131 gi~Is~V~pGgpA~~~G~L~~GD~ILeV 158 (315)
.+.|..|..||+|++.| +..|++|.++
T Consensus 123 ~~~Vd~v~fgS~A~~~g-~d~d~~I~~v 149 (183)
T PF11874_consen 123 KVIVDEVEFGSPAEKAG-IDFDWEITEV 149 (183)
T ss_pred EEEEEecCCCCHHHHcC-CCCCcEEEEE
Confidence 47899999999999877 9999988655
No 127
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=22.82 E-value=1.7e+02 Score=26.96 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=36.5
Q ss_pred cCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCC-CcEEEEEEeC
Q psy4487 146 EGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQE-PQVELIVSRR 191 (315)
Q Consensus 146 ~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~-~~V~LvV~R~ 191 (315)
.|....|++|+-|+++-.+|.+--+++++|++.+.. .-|..+|.|.
T Consensus 106 eG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~ivDR~ 152 (201)
T COG0461 106 EGGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVIVDRQ 152 (201)
T ss_pred EecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEEEEEEEecc
Confidence 455668999999999999999999999999998875 1133444564
No 128
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=21.31 E-value=1.5e+02 Score=26.71 Aligned_cols=43 Identities=14% Similarity=0.287 Sum_probs=35.0
Q ss_pred CCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCC-CcEEEEEEeC
Q psy4487 149 LLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQE-PQVELIVSRR 191 (315)
Q Consensus 149 L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~-~~V~LvV~R~ 191 (315)
+..||+|+-|+++-.+|-|..++++++++++.. ..+-.+|.|.
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~~ 157 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEKS 157 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEec
Confidence 678999999999999999999999999999864 1133445554
No 129
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=20.22 E-value=1.6e+02 Score=30.56 Aligned_cols=49 Identities=14% Similarity=0.286 Sum_probs=38.5
Q ss_pred cccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCC-CcEEEEEEeCC
Q psy4487 144 DLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQE-PQVELIVSRRI 192 (315)
Q Consensus 144 ~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~-~~V~LvV~R~~ 192 (315)
-..|.+..||+|+=|+++-.+|.|-.+++++|++.+.. ..+..+|.|..
T Consensus 385 ~ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~vlVDR~~ 434 (477)
T PRK05500 385 LIEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFIDHEQ 434 (477)
T ss_pred eEecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECCc
Confidence 34677889999999999999999999999999998764 11234445554
Done!