Query psy4487
Match_columns 315
No_of_seqs 337 out of 1642
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 18:21:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4487.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4487hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wfg_A Regulating synaptic mem 99.8 1.5E-20 5.2E-25 157.1 13.2 117 77-193 9-128 (131)
2 1i16_A Interleukin 16, LCF; cy 99.6 5.2E-15 1.8E-19 123.0 11.3 94 93-194 27-120 (130)
3 3b76_A E3 ubiquitin-protein li 99.6 9.5E-15 3.3E-19 120.1 11.4 88 97-192 26-113 (118)
4 3gge_A PDZ domain-containing p 99.6 2.1E-14 7.3E-19 114.8 12.9 86 96-193 6-91 (95)
5 1ujd_A KIAA0559 protein; PDZ d 99.6 1.6E-14 5.4E-19 117.8 11.0 97 96-194 13-111 (117)
6 2iwo_A Multiple PDZ domain pro 99.6 6.6E-15 2.2E-19 121.1 8.5 90 96-193 25-114 (120)
7 2db5_A INAD-like protein; PDZ 99.6 1.7E-14 5.8E-19 119.1 10.6 92 94-193 24-116 (128)
8 1uhp_A Hypothetical protein KI 99.6 7.5E-14 2.6E-18 111.6 13.9 95 90-193 3-102 (107)
9 3cbz_A Dishevelled-2; PDZ doma 99.5 2.2E-14 7.6E-19 115.4 10.4 93 95-195 5-99 (108)
10 1wi4_A Synip, syntaxin binding 99.5 6.3E-14 2.1E-18 113.2 13.0 90 95-193 15-106 (109)
11 1wf8_A Neurabin-I; PDZ domain, 99.5 5.2E-14 1.8E-18 112.5 12.4 95 92-195 6-103 (107)
12 4amh_A Disks large homolog 1; 99.5 2.2E-14 7.7E-19 115.1 10.2 81 111-193 11-93 (106)
13 2fne_A Multiple PDZ domain pro 99.5 1.9E-14 6.5E-19 117.8 10.0 89 96-193 26-114 (117)
14 2i1n_A Discs, large homolog 3; 99.5 7.6E-14 2.6E-18 110.3 13.0 92 94-194 3-96 (102)
15 1d5g_A Human phosphatase HPTP1 99.5 7.3E-14 2.5E-18 109.1 12.7 89 96-193 6-94 (96)
16 2g5m_B Neurabin-2; spinophilin 99.5 5.5E-14 1.9E-18 113.3 11.8 93 93-194 2-97 (113)
17 2d92_A INAD-like protein; PDZ 99.5 3.7E-14 1.3E-18 113.9 10.7 90 96-193 16-106 (108)
18 2awx_A Synapse associated prot 99.5 5.9E-14 2E-18 111.9 11.7 90 96-194 4-95 (105)
19 3egg_C Spinophilin; PP1, serin 99.5 5E-14 1.7E-18 123.0 12.0 88 95-191 80-170 (170)
20 2fe5_A Presynaptic protein SAP 99.5 8.2E-14 2.8E-18 108.2 11.8 89 95-192 3-93 (94)
21 2byg_A Channel associated prot 99.5 8.2E-14 2.8E-18 113.9 12.2 89 95-192 24-114 (117)
22 1wha_A KIAA0147 protein, scrib 99.5 1E-13 3.5E-18 110.5 12.3 92 94-194 6-100 (105)
23 2jik_A Synaptojanin-2 binding 99.5 1.4E-13 4.9E-18 108.5 12.7 91 95-194 7-99 (101)
24 3axa_A Afadin, nectin-3, prote 99.5 9.2E-14 3.2E-18 110.7 10.9 89 95-193 11-99 (106)
25 1r6j_A Syntenin 1; PDZ, membra 99.5 7.2E-14 2.5E-18 108.6 9.9 75 97-190 6-80 (82)
26 1uep_A Membrane associated gua 99.5 1E-13 3.5E-18 110.2 10.8 92 93-194 7-98 (103)
27 2o2t_A Multiple PDZ domain pro 99.5 5.2E-14 1.8E-18 114.1 9.2 91 95-193 20-111 (117)
28 1um1_A KIAA1849 protein, RSGI 99.5 1.4E-13 4.7E-18 110.4 11.5 89 95-192 8-96 (110)
29 2ehr_A INAD-like protein; PDZ 99.5 2E-13 6.7E-18 110.8 12.5 91 96-194 16-112 (117)
30 2q9v_A Membrane-associated gua 99.5 1.2E-13 4.1E-18 106.7 10.5 86 97-192 4-89 (90)
31 2dc2_A GOPC, golgi associated 99.5 9.4E-14 3.2E-18 110.7 10.1 89 95-194 9-97 (103)
32 1ihj_A INAD; intermolecular di 99.5 1.5E-13 5E-18 107.8 10.9 89 95-191 5-96 (98)
33 2jil_A GRIP1 protein, glutamat 99.5 2.3E-13 7.8E-18 106.5 11.8 90 96-194 4-94 (97)
34 3o46_A Maguk P55 subfamily mem 99.5 1.6E-13 5.5E-18 106.9 10.9 86 94-192 3-88 (93)
35 2vwr_A Ligand of NUMB protein 99.5 3.7E-13 1.3E-17 105.1 12.7 90 94-194 2-91 (95)
36 2eno_A Synaptojanin-2-binding 99.5 4.5E-13 1.5E-17 109.3 13.5 91 95-194 17-109 (120)
37 2i04_A Membrane-associated gua 99.5 3.4E-13 1.2E-17 103.0 11.9 83 98-190 3-85 (85)
38 2qg1_A Multiple PDZ domain pro 99.5 3.6E-13 1.2E-17 104.4 11.7 85 96-192 5-89 (92)
39 1q7x_A PDZ2B domain of PTP-BAS 99.5 1.6E-13 5.6E-18 109.6 9.9 90 96-194 10-104 (108)
40 3hpk_A Protein interacting wit 99.5 3.1E-13 1.1E-17 111.0 11.8 86 97-193 21-106 (125)
41 1ueq_A Membrane associated gua 99.5 1.2E-12 4.2E-17 107.4 15.4 91 95-195 19-109 (123)
42 1wg6_A Hypothetical protein (r 99.5 1.2E-13 3.9E-18 114.5 9.3 92 95-194 25-124 (127)
43 1qav_A Alpha-1 syntrophin (res 99.5 1.8E-13 6.3E-18 105.8 9.8 85 96-191 5-89 (90)
44 1ufx_A KIAA1526 protein; PDZ d 99.5 1.8E-13 6.2E-18 109.6 9.8 77 113-192 17-97 (103)
45 1kwa_A Hcask/LIN-2 protein; PD 99.5 2.4E-13 8.2E-18 105.5 10.1 84 97-193 3-86 (88)
46 4e34_A Golgi-associated PDZ an 99.5 2.3E-13 8E-18 104.4 9.5 83 97-190 4-86 (87)
47 2daz_A INAD-like protein; PDZ 99.5 7.5E-13 2.5E-17 108.7 13.2 88 95-193 25-112 (124)
48 3l4f_D SH3 and multiple ankyri 99.5 4.7E-13 1.6E-17 111.8 11.8 88 97-193 29-125 (132)
49 2csj_A TJP2 protein; PDZ domai 99.4 3.9E-13 1.3E-17 109.2 10.5 92 93-194 12-106 (117)
50 3nfk_A Tyrosine-protein phosph 99.4 3.2E-13 1.1E-17 107.6 9.6 88 95-191 17-107 (107)
51 1x6d_A Interleukin-16; PDZ dom 99.4 9.6E-13 3.3E-17 107.0 12.4 90 96-194 16-105 (119)
52 2dkr_A LIN-7 homolog B; LIN-7B 99.4 6E-13 2.1E-17 103.1 10.3 83 98-192 8-90 (93)
53 1mfg_A ERB-B2 interacting prot 99.4 1.3E-12 4.4E-17 102.0 12.1 76 113-192 13-93 (95)
54 2koj_A Partitioning defective 99.4 2.2E-12 7.6E-17 103.3 13.7 91 97-194 13-103 (111)
55 1uju_A Scribble; PDZ domain, c 99.4 1.4E-13 4.8E-18 110.7 6.5 91 96-194 10-106 (111)
56 2r4h_A Membrane-associated gua 99.4 9.9E-13 3.4E-17 106.3 11.6 85 96-192 25-109 (112)
57 2dmz_A INAD-like protein; PDZ 99.4 2.3E-12 7.7E-17 106.2 14.0 94 93-194 13-108 (129)
58 2kpk_A Membrane-associated gua 99.4 2.2E-12 7.7E-17 106.8 13.6 90 95-194 18-107 (129)
59 2opg_A Multiple PDZ domain pro 99.4 2E-12 6.7E-17 101.3 12.3 86 98-194 7-92 (98)
60 1n7e_A AMPA receptor interacti 99.4 2.2E-12 7.4E-17 101.2 12.5 88 96-195 6-93 (97)
61 1z87_A Alpha-1-syntrophin; pro 99.4 7E-13 2.4E-17 123.5 11.2 90 95-195 77-166 (263)
62 1m5z_A GRIP, AMPA receptor int 99.4 2.1E-12 7.3E-17 99.8 12.1 86 94-191 5-90 (91)
63 3i4w_A Disks large homolog 4; 99.4 1.2E-12 4.1E-17 103.4 11.0 84 96-192 12-95 (104)
64 2jre_A C60-1 PDZ domain peptid 99.4 1.6E-12 5.5E-17 103.7 11.8 93 94-193 11-105 (108)
65 2la8_A Inactivation-NO-after-p 99.4 1.6E-12 5.6E-17 104.6 11.8 86 96-195 3-88 (106)
66 2he4_A Na(+)/H(+) exchange reg 99.4 1.5E-12 5.2E-17 100.5 11.2 83 97-193 6-88 (90)
67 1v62_A KIAA1719 protein; struc 99.4 6.3E-13 2.2E-17 108.3 9.4 89 96-194 16-104 (117)
68 2pa1_A PDZ and LIM domain prot 99.4 1.5E-12 5.2E-17 100.0 11.0 75 112-192 11-85 (87)
69 3qe1_A Sorting nexin-27, G pro 99.4 2.7E-12 9.3E-17 102.2 12.8 88 97-194 8-104 (107)
70 3gsl_A Disks large homolog 4; 99.4 1.9E-12 6.6E-17 111.8 12.6 93 92-193 2-96 (196)
71 1wi2_A Riken cDNA 2700099C19; 99.4 2.2E-12 7.6E-17 102.6 12.0 86 96-194 16-101 (104)
72 2djt_A Unnamed protein product 99.4 1.2E-12 4E-17 103.8 10.2 88 96-193 12-99 (104)
73 2cs5_A Tyrosine-protein phosph 99.4 5.8E-13 2E-17 108.3 8.6 91 95-194 15-108 (119)
74 1g9o_A NHE-RF; PDZ domain, com 99.4 2.7E-12 9.1E-17 99.2 11.9 81 97-191 5-85 (91)
75 2dlu_A INAD-like protein; PDZ 99.4 2.3E-12 8E-17 103.3 11.9 85 96-194 16-100 (111)
76 1v6b_A Harmonin isoform A1; st 99.4 1.4E-12 4.9E-17 106.5 10.7 78 113-192 28-107 (118)
77 2yt7_A Amyloid beta A4 precurs 99.4 2.4E-12 8.3E-17 102.0 11.7 91 95-192 9-99 (101)
78 1nf3_C PAR-6B; semi-CRIB motif 99.4 9.3E-13 3.2E-17 109.0 9.6 91 95-192 29-125 (128)
79 1uew_A Membrane associated gua 99.4 2.8E-12 9.5E-17 103.7 12.2 94 93-194 8-105 (114)
80 3sfj_A TAX1-binding protein 3; 99.4 1.6E-12 5.6E-17 102.8 10.5 92 95-191 4-104 (104)
81 1v5q_A GRIP1 homolog, glutamat 99.4 4.5E-12 1.5E-16 103.9 13.3 96 94-195 14-110 (122)
82 1rgw_A ZAsp protein; PDZ, cyph 99.4 1.4E-12 4.7E-17 99.5 9.5 74 113-192 11-84 (85)
83 2h2b_A Tight junction protein 99.4 6.7E-12 2.3E-16 99.9 13.4 92 93-194 5-99 (107)
84 1n7t_A 99-MER peptide of densi 99.4 2.4E-12 8.1E-17 102.0 10.5 83 98-192 14-101 (103)
85 2w4f_A Protein LAP4; structura 99.4 4.7E-12 1.6E-16 98.8 12.0 87 98-194 6-95 (97)
86 2ego_A General receptor for ph 99.4 3.2E-12 1.1E-16 100.2 11.0 86 97-191 6-95 (96)
87 3e17_A Tight junction protein 99.4 2.3E-12 7.8E-17 100.0 10.0 72 112-194 12-83 (88)
88 2q3g_A PDZ and LIM domain prot 99.4 2.1E-12 7.3E-17 99.5 9.8 75 113-193 13-87 (89)
89 2kom_A Partitioning defective 99.4 6.2E-12 2.1E-16 103.1 13.1 88 98-192 33-120 (121)
90 2uzc_A Human pdlim5, PDZ and L 99.4 1.5E-12 5E-17 100.1 8.7 74 113-192 13-86 (88)
91 2ejy_A 55 kDa erythrocyte memb 99.4 2.2E-12 7.5E-17 102.8 9.9 85 94-191 11-95 (97)
92 1wfv_A Membrane associated gua 99.4 8.2E-13 2.8E-17 104.2 7.2 87 98-196 14-100 (103)
93 1x5q_A LAP4 protein; PDZ domai 99.4 1.1E-11 3.9E-16 99.1 13.9 88 96-193 16-106 (110)
94 2v90_A PDZ domain-containing p 99.4 4.2E-12 1.4E-16 99.2 10.6 87 97-194 5-91 (96)
95 1q3o_A Shank1; PDZ, GKAP, pept 99.4 7.5E-12 2.6E-16 100.2 12.3 86 98-192 10-104 (109)
96 2qkv_A Inactivation-NO-after-p 99.4 3.5E-12 1.2E-16 100.2 9.9 84 95-192 8-91 (96)
97 2eeg_A PDZ and LIM domain prot 99.4 4.8E-12 1.6E-16 98.8 10.5 74 113-192 18-91 (94)
98 2iwn_A Multiple PDZ domain pro 99.3 9.2E-12 3.1E-16 96.6 11.8 88 96-192 5-93 (97)
99 2f5y_A Regulator of G-protein 99.3 7.5E-12 2.6E-16 97.1 11.2 81 96-193 4-84 (91)
100 3soe_A Membrane-associated gua 99.3 1.1E-11 3.7E-16 102.0 12.6 85 95-195 12-96 (113)
101 3r68_A Na(+)/H(+) exchange reg 99.3 5.5E-12 1.9E-16 98.0 10.3 83 97-193 7-89 (95)
102 2qbw_A PDZ-fibronectin fusion 99.3 4.7E-12 1.6E-16 110.3 10.7 76 113-192 2-82 (195)
103 2vsp_A PDZ domain-containing p 99.3 2.1E-12 7.2E-17 100.1 7.3 83 97-193 5-87 (91)
104 2iwq_A Multiple PDZ domain pro 99.3 1.3E-11 4.6E-16 101.7 12.5 88 98-193 27-120 (123)
105 1va8_A Maguk P55 subfamily mem 99.3 9.8E-12 3.4E-16 100.5 11.4 85 95-193 25-109 (113)
106 2fcf_A Multiple PDZ domain pro 99.3 1.3E-11 4.3E-16 97.5 11.7 79 113-193 16-100 (103)
107 2kv8_A RGS12, regulator of G-p 99.3 3.3E-12 1.1E-16 97.2 8.0 80 96-192 3-82 (83)
108 2dm8_A INAD-like protein; PDZ 99.3 3.8E-12 1.3E-16 102.7 8.9 87 97-194 19-105 (116)
109 2pkt_A PDZ and LIM domain prot 99.3 9.8E-12 3.4E-16 96.1 10.8 75 113-193 13-87 (91)
110 2eeh_A PDZ domain-containing p 99.3 2.2E-11 7.5E-16 96.0 12.8 91 90-193 5-95 (100)
111 2gzv_A PRKCA-binding protein; 99.3 1.2E-11 4E-16 100.7 11.4 86 96-192 25-110 (114)
112 1tp5_A Presynaptic density pro 99.3 1E-11 3.4E-16 100.8 11.0 86 94-192 13-98 (119)
113 3ngh_A PDZ domain-containing p 99.3 1.3E-11 4.4E-16 98.0 10.7 82 98-192 4-85 (106)
114 2edp_A Fragment, shroom family 99.3 7.7E-12 2.6E-16 98.9 9.1 76 113-194 21-96 (100)
115 2d90_A PDZ domain containing p 99.3 1.2E-11 3.9E-16 97.8 9.9 83 97-193 8-90 (102)
116 1vb7_A PDZ and LIM domain 2; P 99.3 4.9E-12 1.7E-16 98.7 7.6 77 112-194 15-91 (94)
117 2e7k_A Maguk P55 subfamily mem 99.3 6.7E-12 2.3E-16 97.9 8.3 72 112-192 17-88 (91)
118 1wif_A RSGI RUH-020, riken cDN 99.3 1.3E-11 4.6E-16 102.9 10.5 84 96-192 28-111 (126)
119 1p1d_A PDZ45, glutamate recept 99.3 2.2E-11 7.6E-16 106.7 12.2 94 95-194 6-100 (196)
120 1wf7_A Enigma homologue protei 99.3 4.1E-12 1.4E-16 100.7 6.7 75 113-193 15-89 (103)
121 1um7_A Synapse-associated prot 99.3 8.1E-12 2.8E-16 100.0 8.5 87 93-192 13-99 (113)
122 3r0h_A INAD, inactivation-NO-a 99.3 2E-11 7E-16 107.0 11.6 81 112-194 28-110 (206)
123 3bpu_A Membrane-associated gua 99.3 4.2E-11 1.4E-15 92.0 11.9 83 96-192 4-86 (88)
124 3k1r_A Harmonin; protein-prote 99.3 8.6E-12 2.9E-16 109.7 9.0 86 95-193 84-169 (192)
125 2jxo_A Ezrin-radixin-moesin-bi 99.3 1.6E-11 5.5E-16 96.2 9.6 81 98-191 12-92 (98)
126 3khf_A Microtubule-associated 99.3 2.2E-11 7.4E-16 95.6 10.2 79 112-193 12-94 (99)
127 2vz5_A TAX1-binding protein 3; 99.3 2E-11 6.9E-16 102.8 10.5 97 93-194 21-126 (139)
128 2eei_A PDZ domain-containing p 99.3 1.6E-11 5.4E-16 97.5 8.5 84 97-194 10-93 (106)
129 2edv_A FERM and PDZ domain-con 99.2 2.6E-11 8.9E-16 95.3 9.3 84 95-194 8-91 (96)
130 2dls_A PDZ-rhogef, RHO guanine 99.2 6.5E-11 2.2E-15 92.2 11.1 79 97-193 10-88 (93)
131 2xkx_A Disks large homolog 4; 99.2 4E-11 1.4E-15 125.0 12.8 91 94-193 58-150 (721)
132 3gsl_A Disks large homolog 4; 99.2 4.7E-11 1.6E-15 103.0 11.1 79 113-193 111-191 (196)
133 1v5l_A PDZ and LIM domain 3; a 99.2 9.9E-12 3.4E-16 98.7 6.0 80 113-198 15-94 (103)
134 1qau_A Neuronal nitric oxide s 99.2 1.3E-10 4.5E-15 93.1 12.6 87 97-194 3-89 (112)
135 3kzd_A TIAM-1, T-lymphoma inva 99.2 5.5E-11 1.9E-15 94.7 10.2 86 94-190 5-90 (94)
136 2vsv_A Rhophilin-2; scaffold p 99.2 6.9E-11 2.4E-15 96.0 11.1 82 97-194 25-106 (109)
137 2lob_A Golgi-associated PDZ an 98.9 1E-12 3.5E-17 106.9 0.0 83 96-189 28-110 (112)
138 2qt5_A Glutamate receptor-inte 99.2 7.1E-11 2.4E-15 103.6 11.6 86 97-193 9-94 (200)
139 2z17_A Pleckstrin homology SEC 99.2 4.6E-11 1.6E-15 94.8 9.4 82 98-188 18-103 (104)
140 1whd_A RGS3, regulator of G-pr 99.2 4E-11 1.4E-15 94.8 8.5 80 98-194 18-97 (100)
141 1y7n_A Amyloid beta A4 precurs 99.2 8.9E-11 3.1E-15 91.8 10.3 66 112-190 23-88 (90)
142 3tsv_A Tight junction protein 99.2 8.7E-11 3E-15 97.0 10.3 74 113-192 39-112 (124)
143 1ujv_A Membrane associated gua 99.2 2.3E-10 7.9E-15 90.1 12.3 84 96-195 11-94 (96)
144 2edz_A PDZ domain-containing p 99.2 9.2E-11 3.2E-15 94.6 9.8 74 112-192 24-97 (114)
145 2yuy_A RHO GTPase activating p 99.2 1.8E-11 6.2E-16 100.8 5.7 87 98-194 11-122 (126)
146 1uez_A KIAA1526 protein; PDZ d 99.2 6.3E-11 2.2E-15 93.4 8.0 86 95-192 8-93 (101)
147 1x5n_A Harmonin; PDZ domain, u 99.2 1.7E-10 5.9E-15 92.8 10.5 73 112-191 26-98 (114)
148 2kjd_A Sodium/hydrogen exchang 99.2 1.6E-10 5.4E-15 94.7 10.2 83 97-192 11-93 (128)
149 2d8i_A T-cell lymphoma invasio 99.2 9.2E-11 3.1E-15 95.9 8.6 89 95-194 15-103 (114)
150 1b8q_A Protein (neuronal nitri 99.2 1.5E-10 5.2E-15 94.9 10.0 88 96-194 9-96 (127)
151 3r0h_A INAD, inactivation-NO-a 99.1 2.2E-10 7.4E-15 100.4 10.8 75 112-194 124-198 (206)
152 1uit_A Human discs large 5 pro 99.1 1.8E-10 6.1E-15 93.2 8.7 81 98-193 22-102 (117)
153 2eaq_A LIM domain only protein 99.1 3.8E-10 1.3E-14 86.8 9.8 83 98-191 6-88 (90)
154 3shw_A Tight junction protein 99.1 2.6E-10 8.9E-15 113.9 11.2 74 113-192 11-84 (468)
155 2qt5_A Glutamate receptor-inte 99.1 7.7E-10 2.6E-14 96.9 11.9 79 112-192 116-195 (200)
156 2rcz_A Tight junction protein 99.1 5.5E-10 1.9E-14 83.5 9.3 69 112-191 12-80 (81)
157 1uf1_A KIAA1526 protein; PDZ d 99.1 1.2E-09 4.2E-14 89.7 12.0 75 113-194 32-106 (128)
158 3cyy_A Tight junction protein 99.1 1.1E-09 3.7E-14 84.3 10.7 71 112-193 14-84 (92)
159 3tsz_A Tight junction protein 99.1 6E-10 2E-14 108.8 11.3 74 113-192 19-92 (391)
160 1vae_A Rhophilin 2, rhophilin, 99.0 2.9E-10 9.9E-15 92.2 6.4 73 112-193 25-97 (111)
161 3qik_A Phosphatidylinositol 3, 99.0 2E-09 6.9E-14 86.8 10.2 79 96-190 18-99 (101)
162 3suz_A Amyloid beta A4 precurs 99.0 3.2E-10 1.1E-14 110.3 5.9 91 96-193 205-295 (388)
163 2krg_A Na(+)/H(+) exchange reg 99.0 5.2E-10 1.8E-14 101.1 6.1 83 96-192 10-93 (216)
164 2xkx_A Disks large homolog 4; 98.9 2.7E-09 9.4E-14 111.2 11.6 85 96-193 308-392 (721)
165 1wh1_A KIAA1095 protein; PDZ d 98.9 3.8E-09 1.3E-13 86.5 9.3 91 95-194 19-109 (124)
166 2yub_A LIMK-2, LIM domain kina 98.9 8.6E-09 2.9E-13 84.5 10.2 63 129-194 43-107 (118)
167 1w9e_A Syntenin 1; cell adhesi 98.9 1.1E-08 3.9E-13 87.3 10.8 82 96-191 5-86 (166)
168 1p1d_A PDZ45, glutamate recept 98.9 1.1E-08 3.8E-13 89.5 10.9 78 112-192 118-195 (196)
169 3fdw_A Synaptotagmin-like prot 98.5 1.5E-07 5.2E-12 78.3 6.8 51 245-314 5-56 (148)
170 1v27_A Regulating synaptic mem 98.5 1.6E-07 5.5E-12 76.8 6.8 49 247-314 5-53 (141)
171 2bwq_A Regulating synaptic mem 98.5 1.7E-07 5.8E-12 75.7 6.8 48 248-314 3-50 (129)
172 1w15_A Synaptotagmin IV; metal 98.5 1.1E-07 3.9E-12 79.3 5.9 49 247-314 14-62 (153)
173 2z0u_A WW domain-containing pr 98.5 1.2E-07 4.2E-12 80.6 5.4 48 247-313 27-74 (155)
174 3fbk_A RGS3, RGP3, regulator o 98.5 1.8E-07 6.3E-12 78.4 6.1 48 247-314 11-58 (153)
175 3i18_A LMO2051 protein; alpha- 98.5 7.2E-07 2.5E-11 70.3 8.9 61 129-193 6-66 (100)
176 2dmg_A KIAA1228 protein; beta- 98.4 3.8E-07 1.3E-11 75.1 7.5 48 247-314 8-55 (142)
177 2kl1_A YLBL protein; structure 98.4 5.3E-07 1.8E-11 70.5 7.7 59 130-192 5-63 (94)
178 2kjp_A Uncharacterized protein 98.4 1.3E-07 4.5E-12 73.8 4.0 58 131-192 2-59 (91)
179 3id1_A Regulator of sigma E pr 98.4 6.4E-07 2.2E-11 70.2 7.9 60 131-193 3-62 (95)
180 2d8k_A Synaptotagmin VII; exoc 98.4 5.3E-07 1.8E-11 74.2 7.5 49 247-314 10-58 (141)
181 2chd_A Rabphilin-3A, exophilin 98.4 4.8E-07 1.6E-11 74.4 6.8 50 246-314 12-61 (142)
182 3n5a_A Synaptotagmin-7; calciu 98.4 3.9E-07 1.3E-11 74.0 6.0 47 249-314 2-48 (138)
183 2pzd_A Serine protease HTRA2; 98.4 1.2E-06 4.1E-11 70.0 8.5 58 129-192 34-91 (113)
184 1rsy_A Synaptotagmin I; calciu 98.4 6E-07 2.1E-11 75.0 7.0 49 247-314 26-74 (152)
185 1rh8_A Piccolo protein; beta-s 98.4 8.4E-07 2.9E-11 72.8 7.5 47 247-314 4-50 (142)
186 1ugk_A Synaptotagmin IV, KIAA1 98.4 5.4E-07 1.9E-11 73.9 6.3 49 247-314 6-55 (138)
187 3suz_A Amyloid beta A4 precurs 98.4 5.1E-08 1.8E-12 94.8 0.0 67 111-190 306-372 (388)
188 2l97_A HTRA, putative serine p 98.3 1.8E-06 6.3E-11 71.7 9.3 60 129-192 56-115 (134)
189 2enp_A B/K protein; C2 type 1, 98.3 1.3E-06 4.4E-11 72.4 8.1 49 247-314 10-65 (147)
190 3f04_A Synaptotagmin-1; C2A, c 98.3 5.4E-07 1.8E-11 74.2 5.7 49 247-314 18-66 (143)
191 2i6v_A General secretion pathw 98.3 9.5E-07 3.3E-11 67.7 6.3 60 130-192 19-78 (87)
192 1tjx_A Similar to synaptotagmi 98.3 9.3E-07 3.2E-11 74.3 6.6 49 247-314 9-57 (159)
193 2zpm_A Regulator of sigma E pr 98.3 1.3E-06 4.6E-11 66.8 6.8 58 131-192 5-62 (91)
194 2cm5_A Rabphilin-3A; protein t 98.3 1.5E-06 5E-11 73.7 7.1 49 247-314 21-69 (166)
195 1fc6_A Photosystem II D1 prote 98.2 3.2E-06 1.1E-10 81.7 9.6 76 113-193 85-160 (388)
196 2p3w_A Probable serine proteas 98.2 3.4E-06 1.2E-10 67.3 8.1 58 129-192 34-91 (112)
197 1a25_A CALB, protein kinase C 98.2 2.4E-06 8.2E-11 71.0 7.2 47 247-314 17-63 (149)
198 3rdl_A Protein kinase C alpha 98.2 2.6E-06 9.1E-11 69.1 6.9 46 248-314 3-48 (137)
199 2b3r_A Phosphatidylinositol-4- 98.2 2E-06 6.8E-11 70.7 5.7 33 281-314 19-51 (134)
200 4a8c_A Periplasmic PH-dependen 98.2 1.3E-05 4.3E-10 78.9 12.1 75 114-193 345-421 (436)
201 1wfm_A Synaptotagmin XIII; C2 98.1 3.9E-06 1.3E-10 69.2 6.7 46 247-314 10-55 (138)
202 3rle_A Golgi reassembly-stacki 98.1 4.2E-06 1.4E-10 74.2 6.9 73 114-192 3-76 (209)
203 2i4s_A General secretion pathw 98.1 4.8E-06 1.6E-10 66.1 6.1 60 130-192 37-96 (105)
204 2hga_A Conserved protein MTH13 98.1 1.2E-05 4E-10 66.4 8.3 58 130-192 25-82 (125)
205 1w9e_A Syntenin 1; cell adhesi 98.1 2.1E-05 7.2E-10 66.8 10.1 65 112-189 99-163 (166)
206 1y8t_A Hypothetical protein RV 98.0 2E-05 6.7E-10 74.0 10.4 59 129-190 241-299 (324)
207 1te0_A Protease DEGS; two doma 98.0 1.3E-05 4.6E-10 75.2 8.7 62 129-193 243-304 (318)
208 3stj_A Protease DEGQ; serine p 98.0 1.2E-05 4E-10 76.9 8.2 62 129-193 262-323 (345)
209 3rle_A Golgi reassembly-stacki 98.0 7.4E-06 2.5E-10 72.7 6.1 77 112-193 94-171 (209)
210 2q3x_A Regulating synaptic mem 98.0 8.7E-06 3E-10 69.6 5.7 47 247-314 16-63 (171)
211 4fgm_A Aminopeptidase N family 97.9 1.8E-05 6.3E-10 81.1 7.7 71 113-193 485-555 (597)
212 3qo6_A Protease DO-like 1, chl 97.9 2E-05 6.7E-10 75.1 7.4 61 130-193 251-322 (348)
213 3pv2_A DEGQ; trypsin fold, PDZ 97.8 3.4E-05 1.2E-09 76.3 8.5 61 130-193 282-342 (451)
214 4a8c_A Periplasmic PH-dependen 97.8 3.6E-05 1.2E-09 75.7 8.6 62 129-193 262-323 (436)
215 1lcy_A HTRA2 serine protease; 97.8 3.9E-05 1.3E-09 72.4 8.3 58 129-192 255-312 (325)
216 3k50_A Putative S41 protease; 97.8 1.2E-05 4.2E-10 78.7 4.6 75 112-193 73-147 (403)
217 3pv2_A DEGQ; trypsin fold, PDZ 97.8 2.8E-05 9.7E-10 76.9 7.0 58 130-192 386-443 (451)
218 1dqv_A Synaptotagmin III; beta 97.6 6.2E-05 2.1E-09 69.4 6.5 48 248-314 137-184 (296)
219 2r83_A Synaptotagmin-1; C2A-C2 97.5 0.00011 3.7E-09 66.7 6.5 48 248-314 135-182 (284)
220 3num_A Serine protease HTRA1; 97.4 2.3E-05 7.7E-10 74.0 0.0 59 129-193 253-311 (332)
221 1ky9_A Protease DO, DEGP, HTRA 97.3 9.1E-05 3.1E-09 73.2 2.7 61 130-193 286-346 (448)
222 1ky9_A Protease DO, DEGP, HTRA 97.2 4.5E-05 1.5E-09 75.4 0.0 60 129-193 382-441 (448)
223 1k32_A Tricorn protease; prote 97.2 0.00073 2.5E-08 71.7 8.2 70 113-192 737-815 (1045)
224 2ep6_A MCTP2 protein; beta san 97.0 0.00061 2.1E-08 55.1 4.8 39 275-313 6-44 (133)
225 2fk9_A Protein kinase C, ETA t 96.8 0.00065 2.2E-08 58.0 3.2 32 281-312 28-69 (157)
226 3pfq_A PKC-B, PKC-beta, protei 96.8 0.0019 6.4E-08 66.4 7.0 47 247-314 158-204 (674)
227 3b7y_A E3 ubiquitin-protein li 96.6 0.0013 4.5E-08 54.2 3.9 35 279-313 17-51 (153)
228 3kwu_A MUNC13-1; calcium bindi 96.6 0.002 6.7E-08 52.9 4.4 31 281-311 16-46 (148)
229 4fln_A Protease DO-like 2, chl 96.3 0.0044 1.5E-07 62.9 6.1 63 129-193 276-346 (539)
230 4fln_A Protease DO-like 2, chl 95.5 0.022 7.6E-07 57.7 7.1 57 128-188 413-469 (539)
231 2nq3_A Itchy homolog E3 ubiqui 95.3 0.012 4.2E-07 50.4 3.9 32 280-312 34-66 (173)
232 3jzy_A Intersectin 2; C2 domai 94.0 0.04 1.4E-06 53.9 4.4 36 278-313 383-418 (510)
233 3nsj_A Perforin-1; pore formin 93.4 0.06 2.1E-06 54.5 4.5 31 281-312 393-423 (540)
234 1djx_A PLC-D1, phosphoinositid 90.6 0.22 7.4E-06 51.1 4.8 34 280-313 495-530 (624)
235 3l9b_A Otoferlin; C2-domain, b 68.4 3.1 0.0001 35.1 2.9 26 281-311 20-45 (144)
236 2zkm_X 1-phosphatidylinositol- 66.6 4.3 0.00015 42.8 4.3 29 281-313 677-705 (799)
237 3qr0_A Phospholipase C-beta (P 63.6 5.7 0.0002 42.1 4.5 29 281-313 649-677 (816)
238 3ohm_B 1-phosphatidylinositol- 61.8 6.3 0.00021 42.2 4.4 29 281-313 724-752 (885)
239 2xiw_A DNA-binding protein 7D; 47.4 7.3 0.00025 28.8 1.4 34 250-283 11-51 (79)
240 3dor_A Protein CT_858, CPAF; m 28.8 39 0.0013 34.4 3.8 28 132-164 98-125 (583)
241 1gmi_A Protein kinase C, epsil 25.3 31 0.001 27.0 1.9 14 299-312 34-47 (136)
242 2pa2_A 60S ribosomal protein L 20.2 39 0.0013 28.6 1.5 79 97-194 62-142 (151)
No 1
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=99.84 E-value=1.5e-20 Score=157.11 Aligned_cols=117 Identities=49% Similarity=0.804 Sum_probs=103.2
Q ss_pred hccCCCCCCcCCCCCCceeEEEEEEeccCC---CCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCC
Q psy4487 77 KKFLAHPLSWKPSADGKYMIGHMILRKSGD---RYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGD 153 (315)
Q Consensus 77 ~~~~~~P~~wq~s~~g~~~i~~v~L~k~~~---~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD 153 (315)
.+++++|++||++.++++.+.+|+|.+... ...+...+|||+|+||++...+..++||..|.++|+|+++|+|++||
T Consensus 9 ~~~~~~p~~~~~~~~~~~~i~~v~l~~~~~~~~i~k~~~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD 88 (131)
T 1wfg_A 9 SHSDKHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGD 88 (131)
T ss_dssp CCSCCCSCEEEECSSSSEEEEEEEEECSCTTSCCCSCSCTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTC
T ss_pred CCCCCCCCcccCCCCCCceeeEEEEeccceeEEEecCCCCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCC
Confidence 568899999999999999999999998721 22345789999999999887777899999999999999999999999
Q ss_pred EEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 154 QVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 154 ~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
+|++|||+++.+++|++++++|+.++....|.|+|.|...
T Consensus 89 ~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 128 (131)
T 1wfg_A 89 EVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGP 128 (131)
T ss_dssp EEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEECS
T ss_pred EEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcCCC
Confidence 9999999999999999999999998643459999998754
No 2
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.60 E-value=5.2e-15 Score=123.04 Aligned_cols=94 Identities=21% Similarity=0.378 Sum_probs=80.4
Q ss_pred ceeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487 93 KYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE 172 (315)
Q Consensus 93 ~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav 172 (315)
...+..+.|.|.. .||||+|.||++...+..++||..|.++++|+++|.|++||+|++|||+++.+++|++++
T Consensus 27 ~~~~~~v~l~k~~-------~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~ 99 (130)
T 1i16_A 27 EATVCTVTLEKMS-------AGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAW 99 (130)
T ss_dssp SEEEEEEEEETTS-------SSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHH
T ss_pred CCcEEEEEEEcCC-------CccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 3456677888753 689999999987544567899999999999999977999999999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEEeCCCC
Q psy4487 173 DIIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 173 ~iLk~s~~~~~V~LvV~R~~~~ 194 (315)
++|+.+++. .|.|+|.|....
T Consensus 100 ~~l~~~~~~-~v~l~v~r~~~~ 120 (130)
T 1i16_A 100 NIIKALPDG-PVTIVIRRKSLQ 120 (130)
T ss_dssp HHHHTSCSS-EEEEEEEEESSC
T ss_pred HHHHhCCCc-eEEEEEEeCCCC
Confidence 999998653 499999887543
No 3
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=99.58 E-value=9.5e-15 Score=120.12 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=77.0
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
..+.|.|.. ..+|||+|.||........|++|..|.++|+|+++|+|++||+|++|||+++.++++++++.+|+
T Consensus 26 ~~v~l~k~~------~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~ 99 (118)
T 3b76_A 26 KVVNIQKDP------GESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLK 99 (118)
T ss_dssp EEEEEECCT------TCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHH
T ss_pred EEEEEEeCC------CCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 445666654 47999999999876566789999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcEEEEEEeCC
Q psy4487 177 ESRQEPQVELIVSRRI 192 (315)
Q Consensus 177 ~s~~~~~V~LvV~R~~ 192 (315)
.++.. |.|+|.|..
T Consensus 100 ~~~~~--v~L~v~R~~ 113 (118)
T 3b76_A 100 RTSSS--IVLKALEVK 113 (118)
T ss_dssp SCCSE--EEEEEEEEE
T ss_pred cCCCe--EEEEEEECC
Confidence 88655 999998864
No 4
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=99.58 E-value=2.1e-14 Score=114.82 Aligned_cols=86 Identities=21% Similarity=0.296 Sum_probs=74.6
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
...+.|.|.. .+|||+|.|+. ...+||++|.+||+|++.|.|++||+|++|||+++.+++|.|++++|
T Consensus 6 ~k~V~l~K~~-------~~LG~tI~~~g-----~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lL 73 (95)
T 3gge_A 6 EKEVNVYKSE-------DSLGLTITDNG-----VGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKL 73 (95)
T ss_dssp EEEEEEECCS-------SCCCEEEECSS-----SSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEECC-------CCceEEEEcCC-----CCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHH
Confidence 4567788764 69999999742 24689999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCCC
Q psy4487 176 AESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~~ 193 (315)
++.+....++|.+.++..
T Consensus 74 k~~~~g~~~~L~lv~p~~ 91 (95)
T 3gge_A 74 KELKKEELFTMKLIEPKK 91 (95)
T ss_dssp HHSCTTCEEEEEEEEECS
T ss_pred HhCCCCCEEEEEEECccc
Confidence 998876668888887763
No 5
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.56 E-value=1.6e-14 Score=117.76 Aligned_cols=97 Identities=30% Similarity=0.587 Sum_probs=80.9
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCC--CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLE--DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED 173 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~--~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~ 173 (315)
...++|.|..........+|||+|.||.+.. .+..|++|..|.++|+|+++|.|++||+|++|||+++.+++|++++.
T Consensus 13 ~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~ 92 (117)
T 1ujd_A 13 HARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQS 92 (117)
T ss_dssp EEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred eEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHH
Confidence 4566777765333334579999999998652 34568999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEEEeCCCC
Q psy4487 174 IIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 174 iLk~s~~~~~V~LvV~R~~~~ 194 (315)
+|+..... |.|+|.|+...
T Consensus 93 ~l~~~~~~--v~l~v~R~~~~ 111 (117)
T 1ujd_A 93 IISQQSGE--AEICVRLDLNM 111 (117)
T ss_dssp HHSCCSSC--EEEEEESSCCC
T ss_pred HHhcCCCE--EEEEEEECCcc
Confidence 99987655 99999997643
No 6
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=99.56 E-value=6.6e-15 Score=121.08 Aligned_cols=90 Identities=19% Similarity=0.292 Sum_probs=76.7
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
+..++|.|.. ..+|||+|.||.+......+++|..|.++|+|+++|.|++||+|++|||+++.++++.+++.+|
T Consensus 25 ~~~v~l~k~~------~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l 98 (120)
T 2iwo_A 25 LRTVEMKKGP------TDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLL 98 (120)
T ss_dssp CEEEEEEC----------CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHH
T ss_pred cEEEEEEcCC------CCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 5567888865 3599999999987554557899999999999999977999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCCC
Q psy4487 176 AESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~~ 193 (315)
+..+.. |+|+|.|...
T Consensus 99 ~~~~~~--v~l~v~r~g~ 114 (120)
T 2iwo_A 99 KNASGS--IEMQVVAGGD 114 (120)
T ss_dssp HHCCSE--EEEEEECCTT
T ss_pred HcCCCe--EEEEEEECCc
Confidence 998765 9999998754
No 7
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=99.56 E-value=1.7e-14 Score=119.06 Aligned_cols=92 Identities=22% Similarity=0.314 Sum_probs=80.5
Q ss_pred eeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCC-CCCHHHHH
Q psy4487 94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMR-GKSFQDVE 172 (315)
Q Consensus 94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~-g~t~~eav 172 (315)
..+..+.|.|.. ..+|||.|.||.+...+..|+||..|.++|+|+++|+|++||+|++|||+++. ++++++++
T Consensus 24 ~~~~~v~l~k~~------~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~ 97 (128)
T 2db5_A 24 RQIEYIDIERPS------TGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAI 97 (128)
T ss_dssp CEEEEEEEECCS------SSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHH
T ss_pred CceEEEEEEECC------CCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHH
Confidence 356777888764 36999999999887666679999999999999999999999999999999997 99999999
Q ss_pred HHHHhcCCCCcEEEEEEeCCC
Q psy4487 173 DIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 173 ~iLk~s~~~~~V~LvV~R~~~ 193 (315)
.+|+..+.. |.|+|.|...
T Consensus 98 ~~l~~~~~~--v~l~v~r~~~ 116 (128)
T 2db5_A 98 ALLQQTTGS--LRLIVAREPV 116 (128)
T ss_dssp HHHHHCCSE--EEEEEEECCC
T ss_pred HHHHcCCCe--EEEEEEcCCC
Confidence 999996644 9999999754
No 8
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.55 E-value=7.5e-14 Score=111.60 Aligned_cols=95 Identities=23% Similarity=0.432 Sum_probs=80.0
Q ss_pred CCCceeEEEEEEeccCCCCCCCCCccceEEEcCcCC-----CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCC
Q psy4487 90 ADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLL-----EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMR 164 (315)
Q Consensus 90 ~~g~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~-----~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~ 164 (315)
.++......+.|.|.. .+|||+|.||.+. .....+++|..|.++|+|+++|.|++||+|++|||+++.
T Consensus 3 ~~~~~~~~~v~l~k~~-------~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~ 75 (107)
T 1uhp_A 3 SGSSGKSLTLVLHRDS-------GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLS 75 (107)
T ss_dssp CCCSSEEEEEEECCSS-------SCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECT
T ss_pred CCcCcEEEEEEEEeCC-------CccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECC
Confidence 3445567778888863 6899999998853 223579999999999999998669999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 165 GKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 165 g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
+++|.+++.+++..... |.|+|.|...
T Consensus 76 ~~~~~~~~~~~~~~~~~--v~l~v~R~~~ 102 (107)
T 1uhp_A 76 RATHDQAVEAFKTAKEP--IVVQVLRRTS 102 (107)
T ss_dssp TCCHHHHHHHHHHCCSS--EEEEEEECCS
T ss_pred CCCHHHHHHHHHcCCCc--EEEEEEeCCC
Confidence 99999999999987765 9999988653
No 9
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=99.55 E-value=2.2e-14 Score=115.44 Aligned_cols=93 Identities=20% Similarity=0.307 Sum_probs=77.9
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
.+..+.|.|.. ..+|||+|.||.+. ....|++|..|.++|+|+++|+|++||+|++|||+++.+++|++++.+
T Consensus 5 ~~~~v~l~k~~------~~~lG~~i~g~~~~-~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~ 77 (108)
T 3cbz_A 5 NIITVTLNMEK------YNFLGISIVGQSNE-RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77 (108)
T ss_dssp CEEEEEECHHH------HCCCCEEEEEECSS-TTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHH
T ss_pred eEEEEEEEeCC------CCccCEEEEcCcCC-CCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 35567788754 36899999998753 346799999999999999999999999999999999999999999999
Q ss_pred HHhc--CCCCcEEEEEEeCCCCC
Q psy4487 175 IAES--RQEPQVELIVSRRIQPK 195 (315)
Q Consensus 175 Lk~s--~~~~~V~LvV~R~~~~~ 195 (315)
|+.+ ... .|.|+|.|.....
T Consensus 78 l~~~~~~~~-~v~l~v~R~~~~~ 99 (108)
T 3cbz_A 78 LRDIVHKPG-PIVLTVAKSGGGS 99 (108)
T ss_dssp HHHHHTSSS-CEEEEEECCCC-C
T ss_pred HHhcccCCC-eEEEEEEeCCCCC
Confidence 9988 322 3999999976543
No 10
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.55 E-value=6.3e-14 Score=113.24 Aligned_cols=90 Identities=28% Similarity=0.418 Sum_probs=76.4
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
.+..++|.|. .||||+|.||.+... ..++||..|.++|+|+++|+|++||+|++|||+++.+++|++++++
T Consensus 15 ~~~~v~l~k~--------~glG~~i~gg~~~~~-~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~ 85 (109)
T 1wi4_A 15 AFRVITVTKE--------TGLGLKILGGINRNE-GPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSI 85 (109)
T ss_dssp TEEEEEECCS--------SCCCEEEEECSSSSS-CSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHH
T ss_pred cEEEEEEeCC--------CccCEEEEeccCCCC-CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 3556677764 589999999987543 3489999999999999999999999999999999999999999999
Q ss_pred HHhcC--CCCcEEEEEEeCCC
Q psy4487 175 IAESR--QEPQVELIVSRRIQ 193 (315)
Q Consensus 175 Lk~s~--~~~~V~LvV~R~~~ 193 (315)
|+.+. ....++|.|.|...
T Consensus 86 l~~~~~r~~~~~~l~v~R~~~ 106 (109)
T 1wi4_A 86 ITRAKLRSESPWEIAFIRSGP 106 (109)
T ss_dssp HHHSCCSSSSCEEEEEECCCC
T ss_pred HHccccCCCceEEEEEEeCCC
Confidence 99987 22359999988754
No 11
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.55 E-value=5.2e-14 Score=112.53 Aligned_cols=95 Identities=22% Similarity=0.373 Sum_probs=80.7
Q ss_pred CceeEEEEEEeccCCCCCCCCCccceEEEc---CcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCH
Q psy4487 92 GKYMIGHMILRKSGDRYPSASSTLGIKVIG---GKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168 (315)
Q Consensus 92 g~~~i~~v~L~k~~~~~~~~~~gLGfsIvG---Gk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~ 168 (315)
....+..+.|.|.. .+|||+|.| |.+......|+||..|.++|+|+++|+|++||+|++|||+++.++++
T Consensus 6 ~~~~~~~v~l~k~~-------~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~ 78 (107)
T 1wf8_A 6 SGLELFPVELEKDE-------DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQ 78 (107)
T ss_dssp CCEEEEEEEEECBT-------TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCH
T ss_pred CCceEEEEEEEECC-------CcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence 34566677887764 689999999 66554456799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEEeCCCCC
Q psy4487 169 QDVEDIIAESRQEPQVELIVSRRIQPK 195 (315)
Q Consensus 169 ~eav~iLk~s~~~~~V~LvV~R~~~~~ 195 (315)
.+++.+++..+.. |.|+|.|.....
T Consensus 79 ~~~~~~~~~~~~~--v~l~v~R~~~~~ 103 (107)
T 1wf8_A 79 NFAATVLRNTKGN--VRFVIGREKPSG 103 (107)
T ss_dssp HHHHHHHHHCCSE--EEEEEEEECCCS
T ss_pred HHHHHHHhcCCCe--EEEEEEeCCCCC
Confidence 9999999987654 999999876543
No 12
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=99.55 E-value=2.2e-14 Score=115.06 Aligned_cols=81 Identities=21% Similarity=0.346 Sum_probs=72.4
Q ss_pred CCCccceEEEcCcCCCC--CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEE
Q psy4487 111 ASSTLGIKVIGGKLLED--GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIV 188 (315)
Q Consensus 111 ~~~gLGfsIvGGk~~~~--g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV 188 (315)
...+|||+|+||.+... ++.|++|..|.++|+|+++|+|++||+|++|||+++.++++++++.+++..+.. |.|+|
T Consensus 11 ~~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~--v~l~v 88 (106)
T 4amh_A 11 GSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDF--VYLKV 88 (106)
T ss_dssp -CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSE--EEEEE
T ss_pred CCCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCe--EEEEE
Confidence 45799999999997643 556999999999999999999999999999999999999999999999988754 99999
Q ss_pred EeCCC
Q psy4487 189 SRRIQ 193 (315)
Q Consensus 189 ~R~~~ 193 (315)
.|...
T Consensus 89 ~R~~~ 93 (106)
T 4amh_A 89 AKPGS 93 (106)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 99764
No 13
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=99.55 E-value=1.9e-14 Score=117.81 Aligned_cols=89 Identities=25% Similarity=0.400 Sum_probs=78.3
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
...++|.|.. .||||+|.||.+...+..|++|..|.++|||+++|+|++||+|++|||+++.++++++++.+|
T Consensus 26 ~~~v~L~k~~-------~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l 98 (117)
T 2fne_A 26 CKSITLERGP-------DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAIL 98 (117)
T ss_dssp EEEEEECCBT-------TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred cEEEEEEeCC-------CcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4567888764 689999999987655567999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCCC
Q psy4487 176 AESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~~ 193 (315)
+..+.. |.|.|.|...
T Consensus 99 ~~~~~~--v~l~v~R~g~ 114 (117)
T 2fne_A 99 KRTKGT--VTLMVLSSDE 114 (117)
T ss_dssp HHCCSS--EEEEEEECSC
T ss_pred HcCCCe--EEEEEEeCCc
Confidence 988765 9999998753
No 14
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=99.54 E-value=7.6e-14 Score=110.34 Aligned_cols=92 Identities=25% Similarity=0.394 Sum_probs=79.1
Q ss_pred eeEEEEEEeccCCCCCCCCCccceEEEcCcCCC--CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHH
Q psy4487 94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLE--DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171 (315)
Q Consensus 94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~--~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ea 171 (315)
+.+..+.|.|.. .||||+|.||.+.. ....|++|..|.++|||+++|.|++||+|++|||+++.++++.++
T Consensus 3 ~~~~~v~l~k~~-------~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~ 75 (102)
T 2i1n_A 3 FKYEEIVLERGN-------SGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRA 75 (102)
T ss_dssp EEEEEEEEECBT-------TBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHH
T ss_pred ceEEEEEEEECC-------CcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence 456677888763 68999999998642 245799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEEeCCCC
Q psy4487 172 EDIIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 172 v~iLk~s~~~~~V~LvV~R~~~~ 194 (315)
+.+++..+.. |.|.|.|....
T Consensus 76 ~~~~~~~g~~--v~l~v~R~~~~ 96 (102)
T 2i1n_A 76 VEALKEAGPV--VRLVVRRRQPP 96 (102)
T ss_dssp HHHHHHSCSE--EEEEEEEECCC
T ss_pred HHHHHcCCCe--EEEEEEeCCCC
Confidence 9999987644 99999987654
No 15
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=99.54 E-value=7.3e-14 Score=109.11 Aligned_cols=89 Identities=26% Similarity=0.406 Sum_probs=76.6
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
...+.|.|.. .+|||+|.||.+......|++|..|.++|+|+++|.|++||+|++|||+++.++++++++.++
T Consensus 6 ~~~v~l~k~~-------~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l 78 (96)
T 1d5g_A 6 IFEVELAKND-------NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETL 78 (96)
T ss_dssp EEEEEEECSS-------SSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEeCC-------CCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 3456677653 699999999987665667999999999999999888999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCCC
Q psy4487 176 AESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~~ 193 (315)
+..+.. |.|.|.|...
T Consensus 79 ~~~g~~--v~l~v~R~~~ 94 (96)
T 1d5g_A 79 RNTGQV--VHLLLEKGQS 94 (96)
T ss_dssp HSCCSE--EEEEEECCSC
T ss_pred HcCCCe--EEEEEEcCCC
Confidence 986544 9999988654
No 16
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=99.54 E-value=5.5e-14 Score=113.26 Aligned_cols=93 Identities=22% Similarity=0.380 Sum_probs=79.2
Q ss_pred ceeEEEEEEeccCCCCCCCCCccceEEEc---CcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHH
Q psy4487 93 KYMIGHMILRKSGDRYPSASSTLGIKVIG---GKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169 (315)
Q Consensus 93 ~~~i~~v~L~k~~~~~~~~~~gLGfsIvG---Gk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ 169 (315)
+..+..+.|.|.. .||||+|.| |.+......|++|..|.++|+|+++|+|++||+|++|||+++.++++.
T Consensus 2 ~~~~~~v~l~k~~-------~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~ 74 (113)
T 2g5m_B 2 HMELFPVELEKDS-------EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQS 74 (113)
T ss_dssp CCEEEEEECCCCS-------SCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHH
T ss_pred CeEEEEEEEEeCC-------CCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence 4455667777653 689999999 665544567999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487 170 DVEDIIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 170 eav~iLk~s~~~~~V~LvV~R~~~~ 194 (315)
+++.+++..+.. |.|.|.|....
T Consensus 75 ~~~~~~~~~g~~--v~l~v~R~~~~ 97 (113)
T 2g5m_B 75 FAASVLRNTKGR--VRFMIGRERPG 97 (113)
T ss_dssp HHHHHHHHSCSS--CEEEEEECCCC
T ss_pred HHHHHHhcCCCe--EEEEEEeCCCC
Confidence 999999998655 99999987644
No 17
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.53 E-value=3.7e-14 Score=113.88 Aligned_cols=90 Identities=18% Similarity=0.229 Sum_probs=77.5
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCC-CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLL-EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~-~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
+..+.|.|.. .||||+|.||.+. ...+.+++|..|.++|+|+++|.|++||+|++|||+++.+++|++++.+
T Consensus 16 ~~~v~l~k~~-------~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~ 88 (108)
T 2d92_A 16 VKIVELVKDC-------KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEI 88 (108)
T ss_dssp CEEEEEEECS-------SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHH
T ss_pred eEEEEEEECC-------CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 5667888764 6999999998764 2246799999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEEeCCC
Q psy4487 175 IAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~~~ 193 (315)
|+..... .|.|+|.|...
T Consensus 89 l~~~~~~-~v~l~v~R~~~ 106 (108)
T 2d92_A 89 LKAVPPG-LVHLGICSGPS 106 (108)
T ss_dssp HHHSCSE-EEEEEEECCCC
T ss_pred HHhCCCC-eEEEEEEcCCC
Confidence 9997543 49999998763
No 18
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=99.53 E-value=5.9e-14 Score=111.86 Aligned_cols=90 Identities=22% Similarity=0.326 Sum_probs=76.9
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCC--CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLE--DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED 173 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~--~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~ 173 (315)
+..+.|.|.. .||||+|.||.+.. .++.|++|..|.++|+|+++|+|++||+|++|||+++.+.++.+++.
T Consensus 4 ~~~v~l~k~~-------~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~ 76 (105)
T 2awx_A 4 IMEIKLIKGP-------KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVT 76 (105)
T ss_dssp EEEEEEECBT-------TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHH
T ss_pred EEEEEEEECC-------CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 4567777764 59999999998642 34569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEEEeCCCC
Q psy4487 174 IIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 174 iLk~s~~~~~V~LvV~R~~~~ 194 (315)
+++..+.. |.|.|.|....
T Consensus 77 ~~~~~~~~--v~l~v~R~~~~ 95 (105)
T 2awx_A 77 ALKNTSDF--VYLKVAKPTSM 95 (105)
T ss_dssp HHHSCCSE--EEEEEECCCC-
T ss_pred HHHcCCCe--EEEEEEcCCCC
Confidence 99987644 99999987754
No 19
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=99.53 E-value=5e-14 Score=123.03 Aligned_cols=88 Identities=23% Similarity=0.416 Sum_probs=76.8
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEc---CcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIG---GKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvG---Gk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ea 171 (315)
.+..+.|.|.. .||||+|.| |........|+||..|.+||+|+++|+|++||+|++|||+++.+++|.++
T Consensus 80 ~~~~v~l~k~~-------~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~ 152 (170)
T 3egg_C 80 ELFPVELEKDS-------EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFA 152 (170)
T ss_dssp EEEEEEEECBT-------TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHH
T ss_pred eEEEEEEEeCC-------CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence 45667787764 689999999 55554456899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEEeC
Q psy4487 172 EDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 172 v~iLk~s~~~~~V~LvV~R~ 191 (315)
+.+|+.++.. |.|+|.|+
T Consensus 153 ~~~l~~~g~~--v~L~V~R~ 170 (170)
T 3egg_C 153 ASVLRNTKGR--VRFMIGRE 170 (170)
T ss_dssp HHHHHHCCSE--EEEEEEEC
T ss_pred HHHHHcCCCE--EEEEEEeC
Confidence 9999997754 99999884
No 20
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=99.53 E-value=8.2e-14 Score=108.24 Aligned_cols=89 Identities=22% Similarity=0.324 Sum_probs=76.4
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCC--CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLE--DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE 172 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~--~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav 172 (315)
.+..+.|.|.. .||||+|.||.+.. ....|++|..|.++|||+++|.|++||+|++|||+.+.++++.+++
T Consensus 3 ~~~~v~l~k~~-------~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~ 75 (94)
T 2fe5_A 3 TIMEVNLLKGP-------KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAV 75 (94)
T ss_dssp CEEEEEEECCT-------TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHH
T ss_pred EEEEEEEEECC-------CCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 35667887763 68999999998652 3457999999999999999988999999999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEEeCC
Q psy4487 173 DIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 173 ~iLk~s~~~~~V~LvV~R~~ 192 (315)
.+++..... |.|.|.|..
T Consensus 76 ~~~~~~~~~--v~l~v~R~g 93 (94)
T 2fe5_A 76 ASLKNTSDM--VYLKVAKPG 93 (94)
T ss_dssp HHHHTCCSE--EEEEEECCC
T ss_pred HHHHcCCCe--EEEEEEcCC
Confidence 999887654 999998853
No 21
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=99.53 E-value=8.2e-14 Score=113.89 Aligned_cols=89 Identities=22% Similarity=0.350 Sum_probs=75.9
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCC--CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLE--DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE 172 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~--~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav 172 (315)
.+..+.|.|.. .||||+|.||.+.. .++.|++|..|.++|+|+++|+|++||+|++|||+++.++++++++
T Consensus 24 ~~~~v~l~k~~-------~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~ 96 (117)
T 2byg_A 24 TVVEIKLFKGP-------KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAV 96 (117)
T ss_dssp EEEEEEEECBT-------TBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHH
T ss_pred ceEEEEEEeCC-------CCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 34566676653 69999999998642 3457999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEEeCC
Q psy4487 173 DIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 173 ~iLk~s~~~~~V~LvV~R~~ 192 (315)
.+|+..+.. |.|+|.|..
T Consensus 97 ~~l~~~g~~--v~l~v~R~~ 114 (117)
T 2byg_A 97 AILKNTSEV--VYLKVGKPT 114 (117)
T ss_dssp HHHHTCCSE--EEEEEEEEE
T ss_pred HHHHcCCCe--EEEEEEeCC
Confidence 999987644 999998864
No 22
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.52 E-value=1e-13 Score=110.47 Aligned_cols=92 Identities=22% Similarity=0.381 Sum_probs=78.0
Q ss_pred eeEEEEEEeccCCCCCCCCCccceEEEcCcCCC---CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHH
Q psy4487 94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLE---DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170 (315)
Q Consensus 94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~---~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~e 170 (315)
.....++|.|.. .+|||+|.||.+.. .++.+++|..|.++|+|+++|.|++||+|++|||+++.++++++
T Consensus 6 ~~~~~v~l~~~~-------~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~ 78 (105)
T 1wha_A 6 SGRHVACLARSE-------RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDH 78 (105)
T ss_dssp CEEEEEEECCCT-------TCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHH
T ss_pred CeeEEEEEEeCC-------CccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence 345566777754 68999999998742 34579999999999999999889999999999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487 171 VEDIIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 171 av~iLk~s~~~~~V~LvV~R~~~~ 194 (315)
++.+|+..... |.|+|.|....
T Consensus 79 ~~~~l~~~g~~--v~l~v~R~~~~ 100 (105)
T 1wha_A 79 AVSLLTAASPT--IALLLEREAGS 100 (105)
T ss_dssp HHHHHTSCCSC--EEEEEEECCCC
T ss_pred HHHHHHcCCCe--EEEEEEECCCC
Confidence 99999887555 99999997643
No 23
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=99.52 E-value=1.4e-13 Score=108.55 Aligned_cols=91 Identities=25% Similarity=0.482 Sum_probs=77.4
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCC--CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLE--DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE 172 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~--~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav 172 (315)
....+.|.|.. .+|||+|.||.+.. ....|++|..|.++|+|+++|.|++||+|++|||+.+.++++.+++
T Consensus 7 ~~~~v~l~~~~-------~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~ 79 (101)
T 2jik_A 7 TEEEINLTRGP-------SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV 79 (101)
T ss_dssp EEEEEEEECCT-------TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHH
T ss_pred ccEEEEEEeCC-------CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 45667888753 69999999998752 2356999999999999999988999999999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEEeCCCC
Q psy4487 173 DIIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 173 ~iLk~s~~~~~V~LvV~R~~~~ 194 (315)
.+++..+.. |.|.|.|....
T Consensus 80 ~~~~~~g~~--v~l~v~R~~~~ 99 (101)
T 2jik_A 80 DLFRNAGYA--VSLRVQHRLES 99 (101)
T ss_dssp HHHHTCCSE--EEEEEEEESCC
T ss_pred HHHHhCCCe--EEEEEEeCCCC
Confidence 999887544 99999887643
No 24
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=99.51 E-value=9.2e-14 Score=110.74 Aligned_cols=89 Identities=28% Similarity=0.458 Sum_probs=76.7
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
.+..+.| |. ..+|||+|.||........|++|..|.++|+|+++|+|++||+|++|||+++.++++.+++.+
T Consensus 11 ~~~~v~l-~~-------~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~ 82 (106)
T 3axa_A 11 EIITVTL-KK-------QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAEL 82 (106)
T ss_dssp CEEEEEE-EC-------SSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred eEEEEEE-CC-------CCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 4555666 43 368999999988766667899999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEEeCCC
Q psy4487 175 IAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~~~ 193 (315)
++..+.. |.|.|.|...
T Consensus 83 ~~~~g~~--v~l~v~R~~~ 99 (106)
T 3axa_A 83 MTRTSSV--VTLEVAKQGA 99 (106)
T ss_dssp HHTCCSE--EEEEEECCCS
T ss_pred HHcCCCe--EEEEEEeCCc
Confidence 9887654 9999998764
No 25
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=99.51 E-value=7.2e-14 Score=108.61 Aligned_cols=75 Identities=25% Similarity=0.406 Sum_probs=65.7
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
..++|+|.. ..+|||++.+|. |..|.+++||+++| |++||+|++|||+++.+++|+|++++|+
T Consensus 6 r~v~l~k~~------~g~~Gf~i~~g~----------I~~v~~gspA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr 68 (82)
T 1r6j_A 6 RTITMHKDS------TGHVGFIFKNGK----------ITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILS 68 (82)
T ss_dssp EEEEEECCT------TSCCCEEEETTE----------EEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHH
T ss_pred EEEEEEECC------CCCeEEEEECCE----------EEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHh
Confidence 456788875 357999999863 89999999999999 9999999999999999999999999999
Q ss_pred hcCCCCcEEEEEEe
Q psy4487 177 ESRQEPQVELIVSR 190 (315)
Q Consensus 177 ~s~~~~~V~LvV~R 190 (315)
+++.. |+|+|..
T Consensus 69 ~~g~~--V~L~v~p 80 (82)
T 1r6j_A 69 TSGTV--VTITIMP 80 (82)
T ss_dssp HSCSE--EEEEEEE
T ss_pred cCCCE--EEEEEEe
Confidence 77755 9998854
No 26
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.50 E-value=1e-13 Score=110.24 Aligned_cols=92 Identities=27% Similarity=0.432 Sum_probs=77.4
Q ss_pred ceeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487 93 KYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE 172 (315)
Q Consensus 93 ~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav 172 (315)
.+....+.|.|.. .||||.|.||.+. ..+++|..|.++|+|+++|.|++||+|++|||+++.++++++++
T Consensus 7 ~~~~~~v~l~~~~-------~g~G~~i~~g~~~---~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~ 76 (103)
T 1uep_A 7 GYKELDVHLRRME-------SGFGFRILGGDEP---GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVI 76 (103)
T ss_dssp SEEEECCEEESSS-------SSCCEEECCCCST---TSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHH
T ss_pred CceEEEEEEEeCC-------CccCEEEeeecCC---CCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 4556667788753 6899999998764 35899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEEeCCCC
Q psy4487 173 DIIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 173 ~iLk~s~~~~~V~LvV~R~~~~ 194 (315)
++|+.......|.|+|.|....
T Consensus 77 ~~l~~~~~g~~v~l~v~R~~~~ 98 (103)
T 1uep_A 77 DLMHHAARNGQVNLTVRRKVLS 98 (103)
T ss_dssp HHHHHHHHHTEEEEEEEEECCC
T ss_pred HHHHhCCCCCcEEEEEEeCCCC
Confidence 9999873112399999997654
No 27
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=99.50 E-value=5.2e-14 Score=114.09 Aligned_cols=91 Identities=25% Similarity=0.437 Sum_probs=78.4
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCC-CCCHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMR-GKSFQDVED 173 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~-g~t~~eav~ 173 (315)
.+..+.|.|.. ..+|||+|.||.....+..|++|..|.++|+|+++|.|++||+|++|||+++. ++++++++.
T Consensus 20 ~~~~v~l~k~~------~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~ 93 (117)
T 2o2t_A 20 HVEVFELLKPP------SGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAIS 93 (117)
T ss_dssp CEEEEEEECCS------SSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHH
T ss_pred eEEEEEEEECC------CCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHH
Confidence 46677888864 47999999999876555679999999999999999999999999999999998 999999999
Q ss_pred HHHhcCCCCcEEEEEEeCCC
Q psy4487 174 IIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 174 iLk~s~~~~~V~LvV~R~~~ 193 (315)
+|+..+.. |.|+|.|...
T Consensus 94 ~l~~~~~~--v~l~v~R~~~ 111 (117)
T 2o2t_A 94 ILQKAKDT--VQLVIARGSL 111 (117)
T ss_dssp HHHHCCSE--EEEEEESSCC
T ss_pred HHHcCCCE--EEEEEEeCCc
Confidence 99987654 9999998754
No 28
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.50 E-value=1.4e-13 Score=110.44 Aligned_cols=89 Identities=28% Similarity=0.472 Sum_probs=77.9
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
.+..+.|.|.. .||||+|.||.+......|++|..|.++|+|+++|+|++||+|++|||+.+.++++.+++.+
T Consensus 8 ~~~~v~l~~~~-------~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~ 80 (110)
T 1um1_A 8 YVFTVELERGP-------SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDL 80 (110)
T ss_dssp CEEEEEEECCT-------TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHH
T ss_pred cEEEEEEEECC-------CccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 35566777764 58999999998776567899999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEEeCC
Q psy4487 175 IAESRQEPQVELIVSRRI 192 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~~ 192 (315)
++..+.. |.|.|.|..
T Consensus 81 ~~~~~~~--v~l~v~R~~ 96 (110)
T 1um1_A 81 IRHGGKK--MRFLVAKSD 96 (110)
T ss_dssp HHTCCSE--EEEEEECCC
T ss_pred HHcCCCe--EEEEEEeCC
Confidence 9987544 999999875
No 29
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.50 E-value=2e-13 Score=110.83 Aligned_cols=91 Identities=23% Similarity=0.395 Sum_probs=77.3
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCC------CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLE------DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~------~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ 169 (315)
...+.|.|.. ..+|||+|.||.+.. ....|++|..|.++|+|+++|.|++||+|++|||+++.++++.
T Consensus 16 ~~~v~l~k~~------~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~ 89 (117)
T 2ehr_A 16 PRIVEIFREP------NVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHS 89 (117)
T ss_dssp CEEEEECCCS------SSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHH
T ss_pred CEEEEEEeCC------CCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence 4556787764 479999999998642 2346999999999999999888999999999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487 170 DVEDIIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 170 eav~iLk~s~~~~~V~LvV~R~~~~ 194 (315)
+++.+++..+.. |.|+|.|....
T Consensus 90 ~~~~~~~~~g~~--v~l~v~r~~~~ 112 (117)
T 2ehr_A 90 EAVEAIKNAGNP--VVFIVQSLSST 112 (117)
T ss_dssp HHHHHHHTSCSS--EEEEECCBSCC
T ss_pred HHHHHHHcCCCe--EEEEEEECCCC
Confidence 999999987655 99999877654
No 30
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=106.67 Aligned_cols=86 Identities=24% Similarity=0.421 Sum_probs=73.4
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
..++|.|.. .||||.+.||.+.. .+++|..|.++|||+++|.|++||+|++|||+++.+.++++++.+|+
T Consensus 4 ~~v~l~~~~-------~g~G~~~~~g~~~~---~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~ 73 (90)
T 2q9v_A 4 QDIFLWRKE-------TGFGFRILGGNEPG---EPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQ 73 (90)
T ss_dssp EEEEEECBT-------TBCCEEEEECSSTT---SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred EEEEEEECC-------CccCEEEEccccCC---CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 456777764 68999999997642 46999999999999999989999999999999999999999999999
Q ss_pred hcCCCCcEEEEEEeCC
Q psy4487 177 ESRQEPQVELIVSRRI 192 (315)
Q Consensus 177 ~s~~~~~V~LvV~R~~ 192 (315)
.......|.|.|.|..
T Consensus 74 ~~~~~~~v~l~v~R~~ 89 (90)
T 2q9v_A 74 QAAKQGHVNLTVRQTR 89 (90)
T ss_dssp HHHHHTEEEEEEEECC
T ss_pred hCCCCCeEEEEEEecc
Confidence 8754224999998864
No 31
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=99.50 E-value=9.4e-14 Score=110.74 Aligned_cols=89 Identities=29% Similarity=0.453 Sum_probs=75.7
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
.+..++|.|.. ..+|||+|.||.+. ..+++|..|.++|+|++++.|++||+|++|||+++.++++++++.+
T Consensus 9 ~~~~v~l~~~~------~~~lG~~l~~g~~~---~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~ 79 (103)
T 2dc2_A 9 PIRKVLLLKED------HEGLGISITGGKEH---GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTI 79 (103)
T ss_dssp CEEEEEEECCS------SSCCCEEEEEEGGG---TEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHH
T ss_pred CcEEEEEEeCC------CCccCEEEEeccCC---CCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 35667777754 47999999999764 2489999999999999975699999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEEeCCCC
Q psy4487 175 IAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~~~~ 194 (315)
|+..++. |+|+|.+....
T Consensus 80 l~~~~~~--v~l~v~~~~~~ 97 (103)
T 2dc2_A 80 LSQQRGE--IEFEVVYVALE 97 (103)
T ss_dssp HHHCCSE--EEEEEEECC--
T ss_pred HHhCCCc--EEEEEEecCCc
Confidence 9998865 99999887644
No 32
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=99.49 E-value=1.5e-13 Score=107.78 Aligned_cols=89 Identities=31% Similarity=0.542 Sum_probs=76.2
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCC---CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLED---GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~---g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ea 171 (315)
.+..++|.|.. ..||||+|.||.+... ...|++|..|.++|||+++|.|++||+|++|||+.+.+.++.++
T Consensus 5 ~~~~v~l~k~~------~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~ 78 (98)
T 1ihj_A 5 LIHMVTLDKTG------KKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAV 78 (98)
T ss_dssp EEEEEEEECTT------SSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHH
T ss_pred eEEEEEEEeCC------CCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence 45667888854 4699999999986532 34589999999999999988899999999999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEEeC
Q psy4487 172 EDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 172 v~iLk~s~~~~~V~LvV~R~ 191 (315)
..+++..+.. |.|.|.|.
T Consensus 79 ~~~l~~~g~~--v~l~v~R~ 96 (98)
T 1ihj_A 79 IDLIKEADFK--IELEIQTF 96 (98)
T ss_dssp HHHHHHSCSE--EEEEEEEC
T ss_pred HHHHhcCCCe--EEEEEEeC
Confidence 9999986544 99999886
No 33
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=99.49 E-value=2.3e-13 Score=106.46 Aligned_cols=90 Identities=26% Similarity=0.489 Sum_probs=75.1
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCC-CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLE-DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~-~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
..++.|.|. ..+|||++.||.+.. ....+++|..|.++|||+++|.|++||+|++|||+.+.+++++++..+
T Consensus 4 ~~~v~l~k~-------~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~ 76 (97)
T 2jil_A 4 TVEVTLHKE-------GNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSI 76 (97)
T ss_dssp EEEEEEECB-------TTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHH
T ss_pred EEEEEEEeC-------CCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 456677765 369999999987542 235689999999999999998899999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEEeCCCC
Q psy4487 175 IAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~~~~ 194 (315)
|+..+.. |.|.|.|+...
T Consensus 77 l~~~g~~--v~l~v~R~~~~ 94 (97)
T 2jil_A 77 LKQCGQE--AALLIEYDVSE 94 (97)
T ss_dssp HHHSCSE--EEEEEEEECCC
T ss_pred HHcCCCe--EEEEEEeCCCc
Confidence 9985444 99999987643
No 34
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=99.49 E-value=1.6e-13 Score=106.86 Aligned_cols=86 Identities=22% Similarity=0.341 Sum_probs=73.6
Q ss_pred eeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487 94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED 173 (315)
Q Consensus 94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~ 173 (315)
..+..+.|.|.. .+|||.+.++. ...+++|..|.++|+|+++|.|++||+|++|||+++.+.+|+++++
T Consensus 3 ~~~r~v~l~k~~-------~~lG~~i~~~~----~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~ 71 (93)
T 3o46_A 3 DSVKIIRLVKNR-------EPLGATIKKDE----QTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQ 71 (93)
T ss_dssp -CCEEEEEEESS-------SCCCEEEEECT----TTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHH
T ss_pred ccEEEEEEEeCC-------CCccEEEEecC----CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 346677888863 59999999872 2358999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEEEeCC
Q psy4487 174 IIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 174 iLk~s~~~~~V~LvV~R~~ 192 (315)
+|+..++. |.|+|.+..
T Consensus 72 ~l~~~~~~--v~l~v~~~~ 88 (93)
T 3o46_A 72 ILAQSQGA--ITFKIIPGS 88 (93)
T ss_dssp HHHHCCEE--EEEEEECC-
T ss_pred HHHhCCCe--EEEEEEeCC
Confidence 99998864 999988754
No 35
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=99.49 E-value=3.7e-13 Score=105.05 Aligned_cols=90 Identities=27% Similarity=0.385 Sum_probs=77.0
Q ss_pred eeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487 94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED 173 (315)
Q Consensus 94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~ 173 (315)
+.+.++.|.|.. .+.+|||.+.|+.+ ..|++|..|.++|||+++|.|++||+|++|||+++.++++.+++.
T Consensus 2 ~~~~~v~l~k~~-----~~~~lG~~~~~~~~----~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~ 72 (95)
T 2vwr_A 2 MEILQVALHKRD-----SGEQLGIKLVRRTD----EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQ 72 (95)
T ss_dssp EEEEEEEEECSS-----TTCCCCEEEEECSS----SCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred cEEEEEEEEECC-----CCCcccEEEEeccC----CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 356778888753 24689999998765 358999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEEEeCCCC
Q psy4487 174 IIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 174 iLk~s~~~~~V~LvV~R~~~~ 194 (315)
.++..+.. |.|.|.|....
T Consensus 73 ~~~~~g~~--v~l~v~R~~~~ 91 (95)
T 2vwr_A 73 IIQASGER--VNLTIARPGKP 91 (95)
T ss_dssp HHHHCCSE--EEEEEEEESCS
T ss_pred HHHcCCCE--EEEEEEcCCcC
Confidence 99987654 99999987543
No 36
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4.5e-13 Score=109.30 Aligned_cols=91 Identities=26% Similarity=0.465 Sum_probs=77.7
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCC--CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLED--GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE 172 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~--g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav 172 (315)
....++|.|.. .+|||+|.||.+... ...+++|..|.++++|+++|.|++||+|++|||+.+.++++.+++
T Consensus 17 ~~~~v~l~r~~-------~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~ 89 (120)
T 2eno_A 17 TEEEINLTRGP-------SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV 89 (120)
T ss_dssp EEEEEEEECCS-------SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHH
T ss_pred ceEEEEEEECC-------CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 45567788764 699999999886521 356999999999999999988999999999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEEeCCCC
Q psy4487 173 DIIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 173 ~iLk~s~~~~~V~LvV~R~~~~ 194 (315)
.+++..... |.|+|.|....
T Consensus 90 ~~~~~~g~~--v~l~v~R~~~~ 109 (120)
T 2eno_A 90 DLFRNAGYA--VSLRVQHRLQV 109 (120)
T ss_dssp HHHHHHCSE--EEEEEEEEEEC
T ss_pred HHHHcCCCe--EEEEEEeCCcC
Confidence 999987644 99999887643
No 37
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=99.48 E-value=3.4e-13 Score=103.01 Aligned_cols=83 Identities=28% Similarity=0.417 Sum_probs=70.5
Q ss_pred EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487 98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE 177 (315)
Q Consensus 98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~ 177 (315)
+++|+|.. .||||.+.||.+. ..+++|..|.++|+|+++|.|++||+|++|||+++.+++++++.++|+.
T Consensus 3 ~v~l~k~~-------~g~G~~i~~~~~~---~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~ 72 (85)
T 2i04_A 3 HTKLRKSS-------RGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQS 72 (85)
T ss_dssp EEEEECBT-------TBSSEEEEECCST---TBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred EEEEEECC-------CCCCEEEEcccCC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 45677653 6899999998653 4689999999999999988899999999999999999999999999998
Q ss_pred cCCCCcEEEEEEe
Q psy4487 178 SRQEPQVELIVSR 190 (315)
Q Consensus 178 s~~~~~V~LvV~R 190 (315)
......|.|.|.|
T Consensus 73 ~~~g~~v~l~v~R 85 (85)
T 2i04_A 73 IPIGASVDLELCR 85 (85)
T ss_dssp SCTTCEEEEEEEC
T ss_pred CCCCCeEEEEEEC
Confidence 7522348888875
No 38
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=99.48 E-value=3.6e-13 Score=104.38 Aligned_cols=85 Identities=28% Similarity=0.445 Sum_probs=74.3
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
..++.|.|.. ..+|||.+.|+.+ ..|++|..|.++|||+++|.|++||+|++|||+++.+.+++++..++
T Consensus 5 ~~~v~l~k~~------~~~lG~~~~~~~~----~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~ 74 (92)
T 2qg1_A 5 TLTIGLQKKP------GKGLGLSIVGKRN----DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALL 74 (92)
T ss_dssp EEEEEEECCT------TSCCSEEEECCSS----SCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEeCC------CCcccEEEEeccC----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4567787764 4799999999764 36899999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCC
Q psy4487 176 AESRQEPQVELIVSRRI 192 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~ 192 (315)
+..+.. |.|.|.|..
T Consensus 75 ~~~~~~--v~l~v~R~~ 89 (92)
T 2qg1_A 75 KCSLGT--VTLEVGRIS 89 (92)
T ss_dssp HHCCSE--EEEEEECCC
T ss_pred HcCCCe--EEEEEEccc
Confidence 987655 999998875
No 39
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.47 E-value=1.6e-13 Score=109.63 Aligned_cols=90 Identities=27% Similarity=0.430 Sum_probs=78.8
Q ss_pred EEEEEEeccCCCCCCCCCccceEEE-----cCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVI-----GGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIv-----GGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~e 170 (315)
...+.|.|.. .+|||.|. ||.+......|++|..|.++|+|+++|.|++||+|++|||+++.++++.+
T Consensus 10 ~~~v~l~k~~-------~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~ 82 (108)
T 1q7x_A 10 IFEVELAKND-------NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQ 82 (108)
T ss_dssp EEEEEEESSS-------CSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSH
T ss_pred EEEEEEEECC-------CCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHH
Confidence 5567787753 68999999 99887656789999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487 171 VEDIIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 171 av~iLk~s~~~~~V~LvV~R~~~~ 194 (315)
++.+++..+.. |.|.|.|....
T Consensus 83 ~~~~~~~~g~~--v~l~v~R~~~~ 104 (108)
T 1q7x_A 83 AVETLRNTGQV--VHLLLEKGQSP 104 (108)
T ss_dssp HHHHHHHTTSE--EEEEEECCCCS
T ss_pred HHHHHHcCCCe--EEEEEEeCCcc
Confidence 99999987644 99999987643
No 40
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=99.47 E-value=3.1e-13 Score=110.96 Aligned_cols=86 Identities=31% Similarity=0.511 Sum_probs=75.2
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
..++|.|.. ..+|||++.||.+. ..+++|..|.++|+|+++|+|++||+|++|||+++.+++|++++.+|+
T Consensus 21 ~~v~l~k~~------~~~lG~~i~gg~~~---~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~ 91 (125)
T 3hpk_A 21 GKVTLQKDA------QNLIGISIGGGAQY---CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 91 (125)
T ss_dssp EEEEEECCT------TSCCCEEEEECSSC---CSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred eEEEEEeCC------CCCcCEEEeccCCC---CCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 456677765 46899999999864 358999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcEEEEEEeCCC
Q psy4487 177 ESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 177 ~s~~~~~V~LvV~R~~~ 193 (315)
..++. |.|.|.|...
T Consensus 92 ~~~~~--v~l~v~r~~~ 106 (125)
T 3hpk_A 92 EVKGE--VTIHYNKLQA 106 (125)
T ss_dssp HSCSE--EEEEEEEECS
T ss_pred cCCCe--EEEEEEECCC
Confidence 98765 9999988543
No 41
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.47 E-value=1.2e-12 Score=107.41 Aligned_cols=91 Identities=22% Similarity=0.316 Sum_probs=76.9
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
.+.++.|.|.. .||||+|.||.+. ..+++|..|.++|+|+++|.|++||+|++|||+.+.++++++++++
T Consensus 19 ~~~~v~l~~~~-------~glG~~~~~g~~~---~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~ 88 (123)
T 1ueq_A 19 TFLSTTLKKSN-------MGFGFTIIGGDEP---DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKL 88 (123)
T ss_dssp EEEEEEEECCT-------TSCSEEEECCSSS---SCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHH
T ss_pred cEEEEEEEeCC-------CceeEEEecccCC---CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 45567787764 6899999998753 4589999999999999988899999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEEeCCCCC
Q psy4487 175 IAESRQEPQVELIVSRRIQPK 195 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~~~~~ 195 (315)
|+.......|.|.|.|.....
T Consensus 89 l~~~~~g~~v~l~v~R~~~~~ 109 (123)
T 1ueq_A 89 FQSVPIGQSVNLVLCRGYPLP 109 (123)
T ss_dssp HHTSCTTCEEEEEEEESCCCC
T ss_pred HHhCCCCCeEEEEEEeCCCCC
Confidence 999652234999999976443
No 42
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=99.47 E-value=1.2e-13 Score=114.55 Aligned_cols=92 Identities=32% Similarity=0.483 Sum_probs=75.7
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCC-CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLE-DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED 173 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~-~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~ 173 (315)
....+.|.|.. ..||||+|.|+.+.. ..+.++||..|.++|+|+++|+|++||+|++|||+++.+++|+++++
T Consensus 25 ~~~~v~l~k~~------~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~ 98 (127)
T 1wg6_A 25 LTLEIPLNDSG------SAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAME 98 (127)
T ss_dssp EEEEEECSSST------TTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHH
T ss_pred eEEEEEEeeCC------CCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 34455565332 479999999987541 12458999999999999999999999999999999999999999999
Q ss_pred HHHhc-------CCCCcEEEEEEeCCCC
Q psy4487 174 IIAES-------RQEPQVELIVSRRIQP 194 (315)
Q Consensus 174 iLk~s-------~~~~~V~LvV~R~~~~ 194 (315)
+|+.+ .. .|.|+|.|....
T Consensus 99 ~l~~~~~~~g~~~~--~v~l~v~R~~~~ 124 (127)
T 1wg6_A 99 TLRRSMSMEGNIRG--MIQLVILRRSGP 124 (127)
T ss_dssp HHHHHHHHHHHHTC--EEEEEEEECSCS
T ss_pred HHHHhhccccCCCC--EEEEEEEeCCCC
Confidence 99976 33 499999997654
No 43
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=99.47 E-value=1.8e-13 Score=105.75 Aligned_cols=85 Identities=26% Similarity=0.405 Sum_probs=73.2
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
...+.|.|.. ..+|||.+.||.+. ..+++|..|.++|||+++|.|++||+|++|||+++.++++.+++.++
T Consensus 5 ~~~v~l~k~~------~~~lG~~i~~~~~~---~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~ 75 (90)
T 1qav_A 5 RRRVTVRKAD------AGGLGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQAL 75 (90)
T ss_dssp CEEEEEECCT------TTCCCEEEEEEGGG---TEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHH
T ss_pred cEEEEEEeCC------CCCcCEEEEcccCC---CCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4556777754 47999999998764 35899999999999999856999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeC
Q psy4487 176 AESRQEPQVELIVSRR 191 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~ 191 (315)
+..+.. |.|.|.|.
T Consensus 76 ~~~~~~--v~l~v~r~ 89 (90)
T 1qav_A 76 KKTGKE--VVLEVKYM 89 (90)
T ss_dssp HTCCSE--EEEEEEEC
T ss_pred HhCCCe--EEEEEEEe
Confidence 987654 99999874
No 44
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.47 E-value=1.8e-13 Score=109.57 Aligned_cols=77 Identities=30% Similarity=0.479 Sum_probs=67.1
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhc----CCCCcEEEEE
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAES----RQEPQVELIV 188 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s----~~~~~V~LvV 188 (315)
.||||+|.||.+.. ...++|..|.++++|+++|+|++||+|++|||+++.+++|+||+++|+.+ .. ..+.|+|
T Consensus 17 ~glG~~i~gg~~~~--~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~-~~i~l~v 93 (103)
T 1ufx_A 17 ATLGIAIEGGANTR--QPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDR-DYIDFLV 93 (103)
T ss_dssp SSCCEEEECBTTSS--CSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSC-SEEEEEE
T ss_pred CcCCeEEECCCCCC--CCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCC-CeEEEEE
Confidence 79999999998753 24569999999999999999999999999999999999999999999985 32 3488888
Q ss_pred EeCC
Q psy4487 189 SRRI 192 (315)
Q Consensus 189 ~R~~ 192 (315)
.|..
T Consensus 94 ~r~~ 97 (103)
T 1ufx_A 94 TEFN 97 (103)
T ss_dssp CCCC
T ss_pred EEcc
Confidence 8765
No 45
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=99.47 E-value=2.4e-13 Score=105.53 Aligned_cols=84 Identities=18% Similarity=0.359 Sum_probs=72.4
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
..+.|.|.. +.+|||+|.++. ..+++|..|.++|+|++++.|++||+|++|||+++.+++|++++++|+
T Consensus 3 r~V~l~K~~------~~~lG~~i~~~~-----~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~ 71 (88)
T 1kwa_A 3 RLVQFQKNT------DEPMGITLKMNE-----LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLR 71 (88)
T ss_dssp EEEEEEECS------SSCCCEEEECSC-----GGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHH
T ss_pred EEEEEEeCC------CCceeEEEEeCC-----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence 456788875 478999999853 247999999999999986779999999999999999999999999999
Q ss_pred hcCCCCcEEEEEEeCCC
Q psy4487 177 ESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 177 ~s~~~~~V~LvV~R~~~ 193 (315)
...+ .|.|.|.|...
T Consensus 72 ~~~~--~v~l~v~r~~~ 86 (88)
T 1kwa_A 72 EMRG--SITFKIVPSYR 86 (88)
T ss_dssp HCCE--EEEEEEECCCC
T ss_pred cCCC--cEEEEEECCcC
Confidence 9876 49999988653
No 46
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=99.46 E-value=2.3e-13 Score=104.38 Aligned_cols=83 Identities=30% Similarity=0.499 Sum_probs=71.1
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
..+.|.|.. ..+|||.+.||.+. ..+++|..|.++|||++++.|++||+|++|||+++.++++++++.+++
T Consensus 4 ~~v~l~~~~------~~~lG~~i~~~~~~---~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~ 74 (87)
T 4e34_A 4 RKVLLLKED------HEGLGISITGGKEH---GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS 74 (87)
T ss_dssp EEEEEECCT------TBCCCEEEEEEGGG---TEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHH
T ss_pred EEEEEEECC------CCcccEEEEccCCC---CCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 456777764 46999999999764 257999999999999985559999999999999999999999999999
Q ss_pred hcCCCCcEEEEEEe
Q psy4487 177 ESRQEPQVELIVSR 190 (315)
Q Consensus 177 ~s~~~~~V~LvV~R 190 (315)
+.+.. +.|+|.+
T Consensus 75 ~~~~~--v~l~v~~ 86 (87)
T 4e34_A 75 QQRGE--IEFEVVY 86 (87)
T ss_dssp HCCSE--EEEEEEE
T ss_pred cCCCe--EEEEEEE
Confidence 87755 8888864
No 47
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.46 E-value=7.5e-13 Score=108.70 Aligned_cols=88 Identities=24% Similarity=0.401 Sum_probs=76.5
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
.+..+.|.|.. .+|||+|.||.+. ...+++|..|.++|+|+++|+|++||+|++|||+++.++++.+++.+
T Consensus 25 ~~~~v~l~k~~-------~glG~~l~~~~~~--~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~ 95 (124)
T 2daz_A 25 ELHIIELEKDK-------NGLGLSLAGNKDR--SRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAI 95 (124)
T ss_dssp EEEEEEEECCS-------SCCCEEEECBSST--TSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHH
T ss_pred ceEEEEEEeCC-------CccCEEEeccCCC--CcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 35567788763 6899999998754 24699999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEEeCCC
Q psy4487 175 IAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~~~ 193 (315)
++..+.. |.|+|.|...
T Consensus 96 ~~~~~~~--v~l~v~R~~~ 112 (124)
T 2daz_A 96 IKTAPSK--VKLVFIRNED 112 (124)
T ss_dssp HHHSCSE--EEEEEEECTT
T ss_pred HHcCCCe--EEEEEEeCCC
Confidence 9988754 9999998753
No 48
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=99.46 E-value=4.7e-13 Score=111.78 Aligned_cols=88 Identities=24% Similarity=0.283 Sum_probs=73.7
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCC---------CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCC
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLE---------DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKS 167 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~---------~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t 167 (315)
..++|.|.. ..||||+|.||.... ....|++|..|.++|+|+++| |+.||+|++|||+.+.+++
T Consensus 29 r~v~l~r~~------~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~ 101 (132)
T 3l4f_D 29 KTVLLQKKD------SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVG 101 (132)
T ss_dssp CEEEEECCT------TSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEESSSBCTTSC
T ss_pred EEEEEEECC------CCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence 456777754 469999999997631 123489999999999999998 9999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 168 FQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 168 ~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
+++++.+|+..+.. |.|+|.+...
T Consensus 102 ~~~~~~~l~~~g~~--v~l~v~~~~~ 125 (132)
T 3l4f_D 102 HRQVVNMIRQGGNT--LMVKVVMVTR 125 (132)
T ss_dssp HHHHHHHHHHTTTE--EEEEEECCCC
T ss_pred HHHHHHHHHcCCCE--EEEEEEECCC
Confidence 99999999997655 9999877653
No 49
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.45 E-value=3.9e-13 Score=109.20 Aligned_cols=92 Identities=26% Similarity=0.349 Sum_probs=76.6
Q ss_pred ceeEEEEEEeccCCCCCCCCCccceEEEcCcCCCC---CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHH
Q psy4487 93 KYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLED---GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169 (315)
Q Consensus 93 ~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~---g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ 169 (315)
.+....+.|.|.. ..+|||+|.||.+... +..|++|..|.++|+|+ +.|++||+|++|||+++.+++|.
T Consensus 12 ~~~~~~v~l~k~~------~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~--~gL~~GD~I~~Vng~~v~~~~~~ 83 (117)
T 2csj_A 12 IWEQYTVTLQKDS------KRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHS 83 (117)
T ss_dssp EEEEEEEEEECCS------SSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH--HHBCTTCEEEEESSCBCBTCCHH
T ss_pred cceEEEEEEEECC------CCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc--ccCCCCCEEEEECCEECCCcCHH
Confidence 3455667788764 3799999999987532 46789999999999997 45999999999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487 170 DVEDIIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 170 eav~iLk~s~~~~~V~LvV~R~~~~ 194 (315)
+++.+++..+.. |.|+|.|....
T Consensus 84 ~~~~~l~~~~~~--v~l~v~R~~~~ 106 (117)
T 2csj_A 84 FAVQQLRKSGKI--AAIVVKRPRKV 106 (117)
T ss_dssp HHHHHHHHSCSE--EEEEEEEEEEC
T ss_pred HHHHHHhcCCCe--EEEEEEECCcc
Confidence 999999987654 99999886543
No 50
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=99.44 E-value=3.2e-13 Score=107.60 Aligned_cols=88 Identities=27% Similarity=0.378 Sum_probs=74.6
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccC-CCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEG-HLLAGDQVIEWNGRSMRGKSFQDVED 173 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G-~L~~GD~ILeVNG~~l~g~t~~eav~ 173 (315)
.+..+.|.|.. ..+|||.+.||.+. ..+++|..|.++|+|+++| +|++||+|++|||+++.++++.+++.
T Consensus 17 ~~~~v~l~~~~------~~~~G~~~~gg~~~---~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~ 87 (107)
T 3nfk_A 17 NLVLIRMKPDE------NGRFGFNVKGGYDQ---KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVL 87 (107)
T ss_dssp CCEEEEECCCT------TSCCCEEEEEEGGG---TEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred CEEEEEEEcCC------CCCCCEEEEccCCC---CCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHH
Confidence 35666787764 36999999999764 2589999999999999988 59999999999999999999999999
Q ss_pred HHHhcCC--CCcEEEEEEeC
Q psy4487 174 IIAESRQ--EPQVELIVSRR 191 (315)
Q Consensus 174 iLk~s~~--~~~V~LvV~R~ 191 (315)
+|+.... ...|.|+|.|+
T Consensus 88 ~i~~~~~~~~~~v~l~v~r~ 107 (107)
T 3nfk_A 88 FIKASCERHSGELMLLVRPN 107 (107)
T ss_dssp HHHCGGGSBTTBEEEEEECC
T ss_pred HHHhccccCCcEEEEEEEcC
Confidence 9998864 12499999874
No 51
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.44 E-value=9.6e-13 Score=107.02 Aligned_cols=90 Identities=29% Similarity=0.524 Sum_probs=75.2
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
+..++|.|.. ..+|||.|.||.+. ...|++|..|.++|||+++|+|++||+|++|||+.+.+++|.+++.+|
T Consensus 16 ~~~v~l~~~~------~~~lG~~i~g~~~~--~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l 87 (119)
T 1x6d_A 16 IHVTILHKEE------GAGLGFSLAGGADL--ENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAIL 87 (119)
T ss_dssp EEEEEEECCT------TSCCSEEEECCSSS--SCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHH
T ss_pred eEEEEEEeCC------CCccCEEEeCCCCC--CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4455677654 47999999998864 236899999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCCCC
Q psy4487 176 AESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~~~ 194 (315)
+..+.. .+.++|.|....
T Consensus 88 ~~~~~~-~~~l~v~R~~~~ 105 (119)
T 1x6d_A 88 RQAREP-RQAVIVTRKLTP 105 (119)
T ss_dssp HHTTSS-SEEEEEEECCCS
T ss_pred HhCCCC-eEEEEEEcCCCc
Confidence 988764 266777776644
No 52
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=6e-13 Score=103.13 Aligned_cols=83 Identities=29% Similarity=0.457 Sum_probs=72.0
Q ss_pred EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487 98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE 177 (315)
Q Consensus 98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~ 177 (315)
.+.|.|.. .+|||.+.||.+. ..+++|..|.++++|+++|.|++||+|++|||+.+.++++++++.+++.
T Consensus 8 ~v~l~k~~-------~glG~~l~~~~~~---~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~ 77 (93)
T 2dkr_A 8 VVELPKTD-------EGLGFNIMGGKEQ---NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKA 77 (93)
T ss_dssp EEEEECCT-------TCCCEEEECSSSS---SCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHH
T ss_pred EEEEEeCC-------CCccEEEecccCC---CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 45677653 7999999998764 3589999999999999987799999999999999999999999999998
Q ss_pred cCCCCcEEEEEEeCC
Q psy4487 178 SRQEPQVELIVSRRI 192 (315)
Q Consensus 178 s~~~~~V~LvV~R~~ 192 (315)
.... |.|.|.|..
T Consensus 78 ~~~~--v~l~v~r~~ 90 (93)
T 2dkr_A 78 AQGS--VKLVVRSGP 90 (93)
T ss_dssp CCSE--EEEEECCCC
T ss_pred CCCc--EEEEEEeCC
Confidence 7654 999998764
No 53
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=99.43 E-value=1.3e-12 Score=101.96 Aligned_cols=76 Identities=26% Similarity=0.410 Sum_probs=66.3
Q ss_pred CccceEEEcCcCC-----CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEE
Q psy4487 113 STLGIKVIGGKLL-----EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187 (315)
Q Consensus 113 ~gLGfsIvGGk~~-----~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~Lv 187 (315)
.+|||+|.||++. .....|++|..|.++|+|++ | |++||+|++|||+.+.++++.+++.+++..+.. |.|.
T Consensus 13 ~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~--v~l~ 88 (95)
T 1mfg_A 13 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNT--VELI 88 (95)
T ss_dssp SSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCBHHHHHHHHHHCCSE--EEEE
T ss_pred CCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-C-CCCCCEEEEECCEEcCCCCHHHHHHHhhcCCCe--EEEE
Confidence 3899999998752 12456999999999999998 5 999999999999999999999999999877654 9999
Q ss_pred EEeCC
Q psy4487 188 VSRRI 192 (315)
Q Consensus 188 V~R~~ 192 (315)
|.|..
T Consensus 89 v~R~~ 93 (95)
T 1mfg_A 89 IVREV 93 (95)
T ss_dssp EEEEC
T ss_pred EEeCC
Confidence 98865
No 54
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=99.43 E-value=2.2e-12 Score=103.33 Aligned_cols=91 Identities=26% Similarity=0.411 Sum_probs=75.7
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
..+.|.+.. .||||+|.++.....+..|++|..|.++|+|+++|.|++||+|++|||+.+.+.++++++.+|+
T Consensus 13 ~~~~l~~~~-------~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~ 85 (111)
T 2koj_A 13 LNIQLKKGT-------EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLR 85 (111)
T ss_dssp EEEEEECBT-------TBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred EEEEEEECC-------CccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 345566653 6899999998765445679999999999999998889999999999999999999999999999
Q ss_pred hcCCCCcEEEEEEeCCCC
Q psy4487 177 ESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 177 ~s~~~~~V~LvV~R~~~~ 194 (315)
.......|.|.|.|....
T Consensus 86 ~~~~g~~v~l~v~R~~~~ 103 (111)
T 2koj_A 86 STKMEGTVSLLVFRQEEA 103 (111)
T ss_dssp HCCCSSEEEEEEEECCCC
T ss_pred hCCCCCeEEEEEEeCCCC
Confidence 864223499999987643
No 55
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.43 E-value=1.4e-13 Score=110.68 Aligned_cols=91 Identities=21% Similarity=0.367 Sum_probs=76.6
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCC------CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLE------DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~------~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ 169 (315)
+..+.|.|.. ..+|||.|.||.+.. ....|++|..|.++|+|+++|+|++||+|++|||+.+.++++.
T Consensus 10 ~~~v~l~k~~------~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~ 83 (111)
T 1uju_A 10 LRELCIQKAP------GERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHG 83 (111)
T ss_dssp SSCEEEECCT------TCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHH
T ss_pred cEEEEEEECC------CCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence 3456777764 469999999998531 3456899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487 170 DVEDIIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 170 eav~iLk~s~~~~~V~LvV~R~~~~ 194 (315)
+++.+|+..+.. |.|+|.|....
T Consensus 84 ~~~~~l~~~g~~--v~l~v~r~~~~ 106 (111)
T 1uju_A 84 EAVQLLRSVGDT--LTVLVCDGFES 106 (111)
T ss_dssp HHHHHHSSCSSE--EEECCCCCCCC
T ss_pred HHHHHHHcCCCe--EEEEEEECCCC
Confidence 999999886544 99999887644
No 56
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=99.43 E-value=9.9e-13 Score=106.26 Aligned_cols=85 Identities=19% Similarity=0.393 Sum_probs=73.4
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
...+.|.|.. .||||+|.||.+. ..|++|..|.++|+|+++|.|++||+|++|||+.+.+.++.+++.++
T Consensus 25 ~~~v~l~~~~-------~glG~~l~~~~~~---~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l 94 (112)
T 2r4h_A 25 FYTVELERGA-------KGFGFSLRGGREY---NMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELI 94 (112)
T ss_dssp EEEEEEECBT-------TBTSEEEEECGGG---TCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred eEEEEEEcCC-------CccCEEEeccccC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4567787753 5899999998753 35899999999999999888999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCC
Q psy4487 176 AESRQEPQVELIVSRRI 192 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~ 192 (315)
+..+.. |.|.|.|..
T Consensus 95 ~~~g~~--v~l~v~R~~ 109 (112)
T 2r4h_A 95 KNGGRR--VRLFLKRGE 109 (112)
T ss_dssp HTTTTE--EEEEEECCE
T ss_pred HcCCCe--EEEEEEeCC
Confidence 886544 999998864
No 57
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.43 E-value=2.3e-12 Score=106.22 Aligned_cols=94 Identities=23% Similarity=0.392 Sum_probs=78.5
Q ss_pred ceeEEEEEEeccCCCCCCCCCccceEEEcCcCCCC--CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHH
Q psy4487 93 KYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLED--GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170 (315)
Q Consensus 93 ~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~--g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~e 170 (315)
.+....+.|.+.. ..+|||.+.||.+... ...|++|..|.++|+|+++|.|++||+|++|||+.+.++++++
T Consensus 13 ~~~~~~v~l~~~~------~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~ 86 (129)
T 2dmz_A 13 LFETYNVELVRKD------GQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHD 86 (129)
T ss_dssp CEEEEEEEECCCT------TCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHH
T ss_pred CCcEEEEEEEeCC------CCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence 3556677785533 4789999999876533 4579999999999999999889999999999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487 171 VEDIIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 171 av~iLk~s~~~~~V~LvV~R~~~~ 194 (315)
++.+|+..+.. |.|.|.|....
T Consensus 87 ~~~~l~~~~~~--v~l~v~R~~~~ 108 (129)
T 2dmz_A 87 VVEVLRNAGQV--VHLTLVRRKTS 108 (129)
T ss_dssp HHHHHHHCCSS--EEEEEEEESSS
T ss_pred HHHHHHcCCCe--EEEEEEeCCcc
Confidence 99999995544 99999887643
No 58
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=99.42 E-value=2.2e-12 Score=106.78 Aligned_cols=90 Identities=26% Similarity=0.351 Sum_probs=76.4
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
....++|.|.. .||||.+.||... ..+++|..|.++|+|+++|.|+.||+|++|||+.+.+++|++++++
T Consensus 18 ~~~~v~l~~~~-------~g~G~~i~g~~~~---~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~ 87 (129)
T 2kpk_A 18 KFIHTKLRKSS-------RGFGFTVVGGDEP---DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKI 87 (129)
T ss_dssp EEEEEEEEECS-------SCCSEEEEEEEET---TEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHH
T ss_pred cEEEEEEEECC-------CcccEEEeCccCC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 34466777753 6899999998753 3589999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEEeCCCC
Q psy4487 175 IAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~~~~ 194 (315)
|+.......|.|.|.|....
T Consensus 88 l~~~~~g~~v~l~v~R~~~~ 107 (129)
T 2kpk_A 88 FQSIPIGASVDLELCRGYPL 107 (129)
T ss_dssp HHHSCTTEEEEEEEEECSCC
T ss_pred HHhCCCCCeEEEEEEeCCCC
Confidence 99985333599999998743
No 59
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=99.42 E-value=2e-12 Score=101.30 Aligned_cols=86 Identities=28% Similarity=0.462 Sum_probs=73.5
Q ss_pred EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487 98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE 177 (315)
Q Consensus 98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~ 177 (315)
.+.|.|.. .||||.+.||.+.. ..|++|..|.++|+|+++|.|++||+|++|||+++.++++.+++.+++.
T Consensus 7 ~v~l~~~~-------~~lG~~l~~~~~~~--~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~ 77 (98)
T 2opg_A 7 TIEISKGR-------TGLGLSIVGGSDTL--LGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQ 77 (98)
T ss_dssp EEEEECBT-------TBTCEEEEECTTST--TCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred EEEEEECC-------CcccEEEecCCCCC--CCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 45666653 68999999987542 2489999999999999998899999999999999999999999999998
Q ss_pred cCCCCcEEEEEEeCCCC
Q psy4487 178 SRQEPQVELIVSRRIQP 194 (315)
Q Consensus 178 s~~~~~V~LvV~R~~~~ 194 (315)
.... |.|.|.|....
T Consensus 78 ~~~~--v~l~v~R~~~~ 92 (98)
T 2opg_A 78 TPQR--VRLTLYRDEAP 92 (98)
T ss_dssp CCSE--EEEEEEECSSC
T ss_pred CCCe--EEEEEEcCCCC
Confidence 7744 99999887643
No 60
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=99.42 E-value=2.2e-12 Score=101.15 Aligned_cols=88 Identities=23% Similarity=0.410 Sum_probs=72.9
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
+..+.|++. ..+|||.+.++.+. ..+++|..|.++++|+++|.|++||+|++|||+.+.+++++++..+|
T Consensus 6 ~~~v~l~~~-------~~~lG~~i~~~~~~---~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l 75 (97)
T 1n7e_A 6 IYTVELKRY-------GGPLGITISGTEEP---FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLL 75 (97)
T ss_dssp EEEEEEECT-------TSCCCEEEECCSST---TSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEeC-------CCCcCEEEEcccCC---CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 445566654 36799999987642 25899999999999999988999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCCCCC
Q psy4487 176 AESRQEPQVELIVSRRIQPK 195 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~~~~ 195 (315)
+..+. .|.|.|.|.....
T Consensus 76 ~~~g~--~v~l~v~R~~~~~ 93 (97)
T 1n7e_A 76 QMAGE--TVTLKIKKQTDAQ 93 (97)
T ss_dssp HTCCS--EEEEEEECCCCCC
T ss_pred HcCCC--eEEEEEEeCCCCC
Confidence 86544 4999998876543
No 61
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=99.42 E-value=7e-13 Score=123.51 Aligned_cols=90 Identities=24% Similarity=0.371 Sum_probs=77.7
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
.+..|.|.|.. ..||||.|.||.+. ..|+||..|.+||+|++++.|++||+|++|||+++.+++|++++.+
T Consensus 77 ~~r~V~L~k~~------~~glGf~I~gg~d~---~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~ 147 (263)
T 1z87_A 77 QRRRVTVRKAD------AGGLGISIKGGREN---KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQA 147 (263)
T ss_dssp SSEEECCCTTT------TCCCCCEEEEETTT---TEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHH
T ss_pred ccEEEEEEeCC------CCCEeEEEeeccCC---CCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHH
Confidence 35667787764 47999999999864 3689999999999999966699999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEEeCCCCC
Q psy4487 175 IAESRQEPQVELIVSRRIQPK 195 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~~~~~ 195 (315)
|+..+.. |.|+|.|.....
T Consensus 148 l~~~g~~--V~L~V~R~~~~~ 166 (263)
T 1z87_A 148 LKKTGKE--VVLEVKYMKEVS 166 (263)
T ss_dssp HHHCCSC--CCEEEECCSSSS
T ss_pred HhcCCCe--EEEEEEeCcccc
Confidence 9998765 999999976543
No 62
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.42 E-value=2.1e-12 Score=99.76 Aligned_cols=86 Identities=27% Similarity=0.427 Sum_probs=73.5
Q ss_pred eeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487 94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED 173 (315)
Q Consensus 94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~ 173 (315)
..+..++|.|.. +..+|||.|.+|.. ..|++|..|.++|+|+++| |++||+|++|||+.+.++++.+++.
T Consensus 5 ~~~~~v~l~k~~-----~~~~~G~~~~~~~~----~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~ 74 (91)
T 1m5z_A 5 VELHKVTLYKDS-----GMEDFGFSVADGLL----EKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVP 74 (91)
T ss_dssp CEEEEEEEECCT-----TCSSSSEEEEECTT----SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHH
T ss_pred cceEEEEEEECC-----CCCCccEEEEeccC----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHH
Confidence 356778888764 23689999999864 2589999999999999988 9999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEEEeC
Q psy4487 174 IIAESRQEPQVELIVSRR 191 (315)
Q Consensus 174 iLk~s~~~~~V~LvV~R~ 191 (315)
+++..+.. |.|.|.|+
T Consensus 75 ~~~~~g~~--v~l~v~R~ 90 (91)
T 1m5z_A 75 LIAESGNK--LDLVISRN 90 (91)
T ss_dssp HHHTSTTE--EEEEEEEC
T ss_pred HHHcCCCE--EEEEEEeC
Confidence 99876544 99999885
No 63
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=99.42 E-value=1.2e-12 Score=103.40 Aligned_cols=84 Identities=27% Similarity=0.529 Sum_probs=72.8
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
...++|.|.. .||||.+.||.+ ..|++|..|.++|+|+++|.|++||+|++|||+++.+.++.+++.++
T Consensus 12 ~~~v~l~k~~-------~glG~~~~~~~~----~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~ 80 (104)
T 3i4w_A 12 PRRIVIHRGS-------TGLGFNIVGGEX----GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL 80 (104)
T ss_dssp CEEEEEECBT-------TBTSEEEEECC-----CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHH
T ss_pred cEEEEEEeCC-------CccCEEEECCCC----CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4556787763 689999999865 25899999999999999988999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCC
Q psy4487 176 AESRQEPQVELIVSRRI 192 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~ 192 (315)
+..+.. |.|+|.|..
T Consensus 81 ~~~~~~--v~l~v~r~~ 95 (104)
T 3i4w_A 81 KNAGQT--VTIIAQYKP 95 (104)
T ss_dssp HTSCSE--EEEEEEECH
T ss_pred HcCCCe--EEEEEEECc
Confidence 987654 999998863
No 64
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=99.42 E-value=1.6e-12 Score=103.68 Aligned_cols=93 Identities=22% Similarity=0.414 Sum_probs=76.2
Q ss_pred eeEEEEEEeccCCCCCCCCCccceEEEcCcCCCC--CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHH
Q psy4487 94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLED--GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171 (315)
Q Consensus 94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~--g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ea 171 (315)
+....+.|.+.. ...+|||.+.||.+... ...+++|..|.++|||+++|.|++||+|++|||+.+.+++++++
T Consensus 11 ~~~~~v~l~r~~-----~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~ 85 (108)
T 2jre_A 11 FSLYSVELFREK-----DTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDV 85 (108)
T ss_dssp CEEEEEEEECCS-----TTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHH
T ss_pred cEEEEEEEEecC-----CCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence 445556675322 24799999999876532 45699999999999999998899999999999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEEeCCC
Q psy4487 172 EDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 172 v~iLk~s~~~~~V~LvV~R~~~ 193 (315)
+.+|+..+.. |.|.|.|...
T Consensus 86 ~~~l~~~g~~--v~l~v~R~~~ 105 (108)
T 2jre_A 86 VEVLRNAGNP--VRLLLIRRLP 105 (108)
T ss_dssp HHHHHHHCSE--EEEEEEECCC
T ss_pred HHHHHcCCCe--EEEEEEeCCc
Confidence 9999886544 9999988653
No 65
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=99.41 E-value=1.6e-12 Score=104.58 Aligned_cols=86 Identities=21% Similarity=0.342 Sum_probs=73.8
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
+.++.|.|.. ..||||.+.+. ..|++|..|.++|+|+++|+|++||+|++|||+++.++++.+++.++
T Consensus 3 ~~~v~L~k~~------~~glG~~i~~~------~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~ 70 (106)
T 2la8_A 3 KFNVDLMKKA------GKELGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALF 70 (106)
T ss_dssp EEEEEECCBS------SSTTCCEEEEC------SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHH
T ss_pred EEEEEEEeCC------CCccCEEEEeC------CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4566777654 47899999872 25899999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCCCCC
Q psy4487 176 AESRQEPQVELIVSRRIQPK 195 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~~~~ 195 (315)
+...+. |.|.|.|.....
T Consensus 71 ~~~~~~--v~l~v~R~~~~~ 88 (106)
T 2la8_A 71 KGANGK--VSMEVTRPKPGS 88 (106)
T ss_dssp HSCBSC--EEEEEEECCSCS
T ss_pred hCCCCe--EEEEEEeCCCCC
Confidence 988765 999999976444
No 66
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=99.41 E-value=1.5e-12 Score=100.54 Aligned_cols=83 Identities=31% Similarity=0.404 Sum_probs=71.6
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
..+.|.|.. .||||.+.++.. ..|++|..|.++|+|+++| |++||+|++|||+++.+.+|+++.++|+
T Consensus 6 r~v~l~k~~-------~g~G~~~~~~~~----~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~ 73 (90)
T 2he4_A 6 RLCHLRKGP-------QGYGFNLHSDKS----RPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIK 73 (90)
T ss_dssp EEEEEECBT-------TBCCEEEEECSS----SSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHT
T ss_pred EEEEEEECC-------CCccEEEEccCC----CCCEEEEEECCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 345677764 689999999765 3589999999999999988 9999999999999999999999999999
Q ss_pred hcCCCCcEEEEEEeCCC
Q psy4487 177 ESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 177 ~s~~~~~V~LvV~R~~~ 193 (315)
..+.. |.|.|.|...
T Consensus 74 ~~~~~--v~l~v~r~~~ 88 (90)
T 2he4_A 74 AREDE--ARLLVVGPST 88 (90)
T ss_dssp TSSSE--EEEEEECCCC
T ss_pred cCCCc--EEEEEEccCC
Confidence 87444 9999998754
No 67
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.41 E-value=6.3e-13 Score=108.35 Aligned_cols=89 Identities=25% Similarity=0.313 Sum_probs=75.0
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
...+.|.|.. +.+|||.+.++.+.. ..++||..|.++|+|+++|.|++||+|++|||+++.++++++++++|
T Consensus 16 ~~~v~l~k~~------~~~lG~~i~~~~~~~--~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l 87 (117)
T 1v62_A 16 PLMVEIVKTP------GSALGISLTTTSLRN--KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLL 87 (117)
T ss_dssp SEEEEEECCT------TCCCCCEEEEECCSS--SCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHH
T ss_pred cEEEEEEcCC------CCcccEEEEccCCCC--CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4456787765 468999999986532 24699999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCCCC
Q psy4487 176 AESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~~~ 194 (315)
+..+.. |.|.|.|....
T Consensus 88 ~~~g~~--v~l~v~r~~~~ 104 (117)
T 1v62_A 88 ASISEK--VRLEILPVPQS 104 (117)
T ss_dssp HSCSSE--EEEEECCBTTB
T ss_pred HhCCCe--EEEEEEECCCC
Confidence 975544 99999887643
No 68
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=99.41 E-value=1.5e-12 Score=99.96 Aligned_cols=75 Identities=23% Similarity=0.376 Sum_probs=67.4
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~ 191 (315)
..+|||++.||.+. ..+++|..|.++|||+++| |++||+|++|||+++.+++++++.++|+.... .|.|.|.|.
T Consensus 11 ~~~lG~~l~~~~~~---~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~--~v~l~v~R~ 84 (87)
T 2pa1_A 11 PAPWGFRITGGRDF---HTPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSPS--PLRLQLDRI 84 (87)
T ss_dssp SSCCSEEEEEEGGG---TEEEEEEEECSSSHHHHTT-CCTTCEEEEETTEESTTCCHHHHHHHHHTCCS--SEEEEEEEC
T ss_pred CCccCEEEecccCC---CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC--eEEEEEEec
Confidence 46899999999864 3589999999999999877 99999999999999999999999999999874 499999986
Q ss_pred C
Q psy4487 192 I 192 (315)
Q Consensus 192 ~ 192 (315)
.
T Consensus 85 ~ 85 (87)
T 2pa1_A 85 T 85 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 69
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=99.41 E-value=2.7e-12 Score=102.16 Aligned_cols=88 Identities=26% Similarity=0.311 Sum_probs=72.6
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCC---------CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCC
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDG---------TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKS 167 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g---------~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t 167 (315)
..+.|.|.. .||||+|.|+.+.... ..++||..|.++|+|+++| |+.||+|++|||+.+.+++
T Consensus 8 r~v~l~k~~-------~g~G~~l~~~~~~~~~~~~~~~~~~~p~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~ 79 (107)
T 3qe1_A 8 RVVRIVKSE-------SGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGAT 79 (107)
T ss_dssp EEEEEECBT-------TBTCEEEECCSSSCCCCEESSSSEESCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCC
T ss_pred EEEEEEECC-------CCCCEEEEcccccCCcceeccccccCCceEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence 355677764 5899999998643211 3456799999999999998 9999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487 168 FQDVEDIIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 168 ~~eav~iLk~s~~~~~V~LvV~R~~~~ 194 (315)
+++++.+|+..+.. |.|+|.|....
T Consensus 80 ~~~~~~~l~~~g~~--v~l~v~r~~~~ 104 (107)
T 3qe1_A 80 HKQVVDLIRAGEKE--LILTVLSVESE 104 (107)
T ss_dssp HHHHHHHHHHCSSE--EEEEEECSSCC
T ss_pred HHHHHHHHHcCCCE--EEEEEEcCCCC
Confidence 99999999987654 99999987644
No 70
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.41 E-value=1.9e-12 Score=111.80 Aligned_cols=93 Identities=24% Similarity=0.333 Sum_probs=80.5
Q ss_pred CceeEEEEEEeccCCCCCCCCCccceEEEcCcCCCC--CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHH
Q psy4487 92 GKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLED--GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169 (315)
Q Consensus 92 g~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~--g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ 169 (315)
|.+.+.+++|.+.. .||||.|.||.+... +..|+||..|.++|+|+++|+|+.||+|++|||+++.+.++.
T Consensus 2 ~~~~~~~v~l~~~~-------~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~ 74 (196)
T 3gsl_A 2 GSMEYEEITLERGN-------SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 74 (196)
T ss_dssp -CEEEEEEEEECBT-------TBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHH
T ss_pred CCcEEEEEEEEECC-------CCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHH
Confidence 45677888998874 689999999987522 357999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 170 DVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 170 eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
+++.+++..+.. |.|+|.|...
T Consensus 75 ~~~~~~~~~g~~--v~l~v~r~~~ 96 (196)
T 3gsl_A 75 AAVEALKEAGSI--VRLYVMRRKP 96 (196)
T ss_dssp HHHHHHHTSCSE--EEEEEEEECC
T ss_pred HHHHHHHhCCCc--EEEEEEecCC
Confidence 999999988755 9999988663
No 71
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.41 E-value=2.2e-12 Score=102.62 Aligned_cols=86 Identities=28% Similarity=0.367 Sum_probs=73.9
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
...++|.|.. ..+|||.+.+|.+. ..+++|..|.++++|+++| |++||+|++|||+.+.++++++++++|
T Consensus 16 ~~~v~l~k~~------~~~lG~~~~~~~~~---~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l 85 (104)
T 1wi2_A 16 PRIVTLKKPP------GAQLGFNIRGGKAS---QLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEIL 85 (104)
T ss_dssp CEEEEECCCT------TCCCSEEEECCSSS---CCCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred CEEEEEEeCC------CCCccEEEEcccCC---CCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 3567788764 36999999998754 3589999999999999988 999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCCCC
Q psy4487 176 AESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~~~ 194 (315)
+. ... |.|.|.|...+
T Consensus 86 ~~-~~~--v~l~v~r~~~~ 101 (104)
T 1wi2_A 86 KT-ARE--ISMRVRFFSGP 101 (104)
T ss_dssp HH-SSS--EEEEEECCCCS
T ss_pred hC-CCE--EEEEEEECCCC
Confidence 98 444 99999987654
No 72
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=1.2e-12 Score=103.77 Aligned_cols=88 Identities=23% Similarity=0.358 Sum_probs=74.3
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
...+.|.+.. .||||.|.++.+. .+..+++|..|.++++|+++|.|++||+|++|||+.+.++++.+++.++
T Consensus 12 ~~~v~l~~~~-------~g~G~~l~~~~~~-~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~ 83 (104)
T 2djt_A 12 HFSVELVRGY-------AGFGLTLGGGRDV-AGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERI 83 (104)
T ss_dssp CEEEEEECCS-------SSCCEEEECCEET-TEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHH
T ss_pred eEEEEEEeCC-------CCccEEEEeccCC-CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4456777764 6899999998764 2246899999999999999888999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCCC
Q psy4487 176 AESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~~ 193 (315)
+..+.. |.|.|.|...
T Consensus 84 ~~~g~~--v~l~v~R~g~ 99 (104)
T 2djt_A 84 RAGGPQ--LHLVIRRPLS 99 (104)
T ss_dssp HHTCSE--EEEEECCCCC
T ss_pred HcCCCe--EEEEEEECCC
Confidence 886544 9999988653
No 73
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.40 E-value=5.8e-13 Score=108.32 Aligned_cols=91 Identities=26% Similarity=0.352 Sum_probs=75.9
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhccc-CCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLE-GHLLAGDQVIEWNGRSMRGKSFQDVED 173 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~-G~L~~GD~ILeVNG~~l~g~t~~eav~ 173 (315)
.+..+.|.|.. ..+|||.|.||.+. ..+++|..|.++|+|+++ |.|++||+|++|||+++.+++|.+++.
T Consensus 15 ~~~~v~l~k~~------~~~~G~~l~gg~~~---~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~ 85 (119)
T 2cs5_A 15 NLVLIRMKPDE------NGRFGFNVKGGYDQ---KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVL 85 (119)
T ss_dssp CCEEEEECCCS------SSCCSEEEEEEGGG---TEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHH
T ss_pred CeEEEEEEeCC------CCCcCEEEecccCC---CCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 45667888864 35799999999864 358999999999999998 469999999999999999999999999
Q ss_pred HHHhcCC--CCcEEEEEEeCCCC
Q psy4487 174 IIAESRQ--EPQVELIVSRRIQP 194 (315)
Q Consensus 174 iLk~s~~--~~~V~LvV~R~~~~ 194 (315)
+++..+. ...|.|+|.|....
T Consensus 86 ~~~~~~~~~~~~v~l~v~R~~~~ 108 (119)
T 2cs5_A 86 FIKASCERHSGELMLLVRPNAVY 108 (119)
T ss_dssp HHHHHHHCCSSCEEEEEECCCCC
T ss_pred HHHhccccCCCEEEEEEEccccc
Confidence 9998754 12399999987643
No 74
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=99.40 E-value=2.7e-12 Score=99.21 Aligned_cols=81 Identities=33% Similarity=0.461 Sum_probs=68.4
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
..++|.|.. .||||++.|+.+ ..+++|..|.++|||+++| |++||+|++|||+++.++++.+++.+++
T Consensus 5 r~v~l~r~~-------~g~G~~~~~~~~----~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~ 72 (91)
T 1g9o_A 5 RLCCLEKGP-------NGYGFHLHGEKG----KLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIR 72 (91)
T ss_dssp EEEEEECBT-------TBCCEEEEECTT----CSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred EEEEEEeCC-------CcccEEEEecCC----CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 456777764 589999999864 2589999999999999988 9999999999999999999999999999
Q ss_pred hcCCCCcEEEEEEeC
Q psy4487 177 ESRQEPQVELIVSRR 191 (315)
Q Consensus 177 ~s~~~~~V~LvV~R~ 191 (315)
...+. +.+++.+.
T Consensus 73 ~~~~~--~~~~~~~r 85 (91)
T 1g9o_A 73 AALNA--VRLLVVDP 85 (91)
T ss_dssp TCSSE--EEEEEECC
T ss_pred cCCCc--EEEEEEcC
Confidence 87754 55555443
No 75
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.40 E-value=2.3e-12 Score=103.34 Aligned_cols=85 Identities=26% Similarity=0.550 Sum_probs=73.0
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
...+.|.|.. .+|||.|.|+.+ .|++|..|.++++|+++|+|++||+|++|||+.+.++++++++.+|
T Consensus 16 ~~~v~l~~~~-------~~lG~~l~~~~~-----~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l 83 (111)
T 2dlu_A 16 VEEVELINDG-------SGLGFGIVGGKT-----SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVL 83 (111)
T ss_dssp EEEEEEECCS-------SCCCEEEECCSS-----SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHH
T ss_pred eEEEEEEeCC-------CccCEEEeccCC-----CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4556677653 689999998764 4899999999999999988999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCCCC
Q psy4487 176 AESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~~~ 194 (315)
+..+.. |.|.|.|....
T Consensus 84 ~~~g~~--v~l~v~R~~~~ 100 (111)
T 2dlu_A 84 RNCGNS--VRMLVARDPAG 100 (111)
T ss_dssp HHHCSE--EEEEEEESCTT
T ss_pred HhCCCe--EEEEEEeCCCC
Confidence 987644 99999887643
No 76
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.40 E-value=1.4e-12 Score=106.50 Aligned_cols=78 Identities=18% Similarity=0.350 Sum_probs=67.1
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCC--CCcEEEEEEe
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQ--EPQVELIVSR 190 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~--~~~V~LvV~R 190 (315)
.||||+|.||.+... ..++|..|.++|+|+++|.|++||+|++|||+++.+++|++++++|+.... ...|.|+|.|
T Consensus 28 ~glG~~i~gg~~~~~--~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r 105 (118)
T 1v6b_A 28 GSLDLALEGGVDSPV--GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAV 105 (118)
T ss_dssp SCCCCEEEEBTTSSS--CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred CccCEEEEcccCCCC--CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEEe
Confidence 489999999986543 359999999999999997799999999999999999999999999987621 2349999998
Q ss_pred CC
Q psy4487 191 RI 192 (315)
Q Consensus 191 ~~ 192 (315)
..
T Consensus 106 ~~ 107 (118)
T 1v6b_A 106 CP 107 (118)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 77
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=99.40 E-value=2.4e-12 Score=101.99 Aligned_cols=91 Identities=22% Similarity=0.342 Sum_probs=72.7
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
.+..+.|.|.. +.+|||.|.+... .....+++|..|.++++|+++|.|++||+|++|||+++.+.++++++++
T Consensus 9 ~~~~v~l~k~~------g~~lG~~i~~~~~-~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~ 81 (101)
T 2yt7_A 9 NCREVHLEKRR------GEGLGVALVESGW-GSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAA 81 (101)
T ss_dssp CCEEEEEECCT------TCCCCEEEEECCC-SSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHH
T ss_pred ceEEEEEEeCC------CCccCEEEEeCCC-CCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 35667777764 3699999985321 1234579999999999999978899999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEEeCC
Q psy4487 175 IAESRQEPQVELIVSRRI 192 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~~ 192 (315)
|+.......|.|.|.|..
T Consensus 82 l~~~~~g~~v~l~v~R~~ 99 (101)
T 2yt7_A 82 VRETKSQTSVTLSIVHCP 99 (101)
T ss_dssp HHHTTTSSEEEEEECCCC
T ss_pred HHhCCCCCeEEEEEEeCC
Confidence 998532245999987753
No 78
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=99.40 E-value=9.3e-13 Score=108.95 Aligned_cols=91 Identities=25% Similarity=0.390 Sum_probs=75.9
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCC------CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLE------DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~------~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~ 168 (315)
.+..+.|.|.. ...+|||+|.||.+.. ....|++|..|.++|+|+++|.|++||+|++|||+++.+.++
T Consensus 29 ~~r~v~l~k~~-----~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~ 103 (128)
T 1nf3_C 29 THRRVRLCKYG-----TEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSL 103 (128)
T ss_dssp TCEEEEECCSS-----TTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCH
T ss_pred ccEEEEEEECC-----CCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence 34567787763 1379999999987531 112489999999999999999899999999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 169 QDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 169 ~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
++++.+|+..+.. |.|.|.|..
T Consensus 104 ~~~~~~l~~~~~~--v~l~v~r~~ 125 (128)
T 1nf3_C 104 DQVTDMMIANSRN--LIITVRPAN 125 (128)
T ss_dssp HHHHHHHHHTTTS--EEEEEECCC
T ss_pred HHHHHHHHcCCCe--EEEEEEECC
Confidence 9999999987765 999998865
No 79
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.40 E-value=2.8e-12 Score=103.65 Aligned_cols=94 Identities=20% Similarity=0.347 Sum_probs=75.4
Q ss_pred ceeEEEEEEeccCCCCCCCCCccceEEEcCcCCCC-CC---CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCH
Q psy4487 93 KYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLED-GT---RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168 (315)
Q Consensus 93 ~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~-g~---~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~ 168 (315)
......++|.|.. ..+|||.|.||.+... +. .+++|..|.++++|++++.|++||+|++|||+.+.+++|
T Consensus 8 ~~~~~~v~l~~~~------~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~ 81 (114)
T 1uew_A 8 SLQTSDVVIHRKE------NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPH 81 (114)
T ss_dssp CCCCEEEEEECCT------TSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCH
T ss_pred cccceEEEEEECC------CCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCH
Confidence 3445667787754 4699999999875422 22 277999999999999834599999999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487 169 QDVEDIIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 169 ~eav~iLk~s~~~~~V~LvV~R~~~~ 194 (315)
++++++|+..... |.|.|.|....
T Consensus 82 ~~~~~~l~~~g~~--v~l~v~r~~~~ 105 (114)
T 1uew_A 82 ADIVKLIKDAGLS--VTLRIIPQEEL 105 (114)
T ss_dssp HHHHHHHHHTTTE--EEEEECCCSCC
T ss_pred HHHHHHHHcCCCe--EEEEEEeCCcC
Confidence 9999999985444 99999887644
No 80
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=99.40 E-value=1.6e-12 Score=102.81 Aligned_cols=92 Identities=24% Similarity=0.473 Sum_probs=73.5
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCC---------CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCC
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLE---------DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRG 165 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~---------~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g 165 (315)
.+..+.+.+... ....+|||++.||.+.. ....|++|..|.++|+|+++| |++||+|++|||+.+.+
T Consensus 4 ~~~~i~~~~~~~---~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~ 79 (104)
T 3sfj_A 4 VVQRVEIHKLRQ---GENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTM 79 (104)
T ss_dssp EEEEEEEECEEE---TTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTT
T ss_pred ceEEEEEEEccC---CCCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCC
Confidence 344555655431 22347999999998752 346789999999999999998 99999999999999999
Q ss_pred CCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487 166 KSFQDVEDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 166 ~t~~eav~iLk~s~~~~~V~LvV~R~ 191 (315)
.+|++++.+|+...+. .|.|.|.|.
T Consensus 80 ~~~~~~~~~l~~~~g~-~v~l~v~R~ 104 (104)
T 3sfj_A 80 VTHDQARKRLTKRSEE-VVRLLVTRQ 104 (104)
T ss_dssp CCHHHHHHHHTCTTCS-EEEEEEEEC
T ss_pred CCHHHHHHHHHhCCCC-EEEEEEEcC
Confidence 9999999999875442 489998874
No 81
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.39 E-value=4.5e-12 Score=103.85 Aligned_cols=96 Identities=21% Similarity=0.355 Sum_probs=78.6
Q ss_pred eeEEEEEEeccCCCCCCCCCccceEEEcCcCC-CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487 94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLL-EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE 172 (315)
Q Consensus 94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~-~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav 172 (315)
.....++|+|.. ..+|||.|.|+... .....+++|..|.++++|+++|.|++||+|++|||+.+.+++++++.
T Consensus 14 ~~~~~v~l~k~~------~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~ 87 (122)
T 1v5q_A 14 TETTEVVLTADP------VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEAN 87 (122)
T ss_dssp EEEEEEEECCCS------SSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHH
T ss_pred ceeEEEEEEeCC------CCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 345567787764 37999999998532 22456899999999999999888999999999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEEeCCCCC
Q psy4487 173 DIIAESRQEPQVELIVSRRIQPK 195 (315)
Q Consensus 173 ~iLk~s~~~~~V~LvV~R~~~~~ 195 (315)
++|+.......|.|.|.|+....
T Consensus 88 ~~l~~~~~g~~v~l~v~R~~~~~ 110 (122)
T 1v5q_A 88 QLLRDSSITSKVTLEIEFDVAES 110 (122)
T ss_dssp HHHHHHTTTTCEEEEEEEECCCS
T ss_pred HHHHhCCCCCeEEEEEEECCccc
Confidence 99998752234999999987654
No 82
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=99.39 E-value=1.4e-12 Score=99.45 Aligned_cols=74 Identities=20% Similarity=0.333 Sum_probs=66.0
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.+|||++.||.+. ..+++|..|.++|||+++| |++||+|++|||+.+.+.++.++..+++..... |.|.|.|..
T Consensus 11 ~~~G~~l~gg~~~---~~~v~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~--v~l~v~R~~ 84 (85)
T 1rgw_A 11 GPWGFRLQGGKDF---NMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYN--LSLTLQKSK 84 (85)
T ss_dssp SCCCEEECCCGGG---TSCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSSC--EEEEEESCC
T ss_pred CccCEEEEeccCC---CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHcCCCe--EEEEEEeCC
Confidence 6899999999865 3579999999999999876 999999999999999999999999999877655 999998853
No 83
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=99.38 E-value=6.7e-12 Score=99.87 Aligned_cols=92 Identities=23% Similarity=0.321 Sum_probs=76.4
Q ss_pred ceeEEEEEEeccCCCCCCCCCccceEEEcCcCCC---CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHH
Q psy4487 93 KYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLE---DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169 (315)
Q Consensus 93 ~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~---~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ 169 (315)
.+....++|.|.. ..||||+|.||.+.. .+..+++|..|.++|+|+ .| |++||+|++|||+.+.+.++.
T Consensus 5 ~~~~~~v~l~k~~------~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-ag-l~~GD~I~~vng~~v~~~~~~ 76 (107)
T 2h2b_A 5 IWEQHTVTLHRAP------GFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQ-LQENDRVAMVNGVSMDNVEHA 76 (107)
T ss_dssp CEEEEEEEEECBT------TTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TT-BCTTCEEEEETTEECTTCCHH
T ss_pred cceeEEEEEEeCC------CCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hC-CCCCCEEEEECCEECCCccHH
Confidence 3456778888875 479999999987642 245699999999999999 55 999999999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487 170 DVEDIIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 170 eav~iLk~s~~~~~V~LvV~R~~~~ 194 (315)
+++..++..+.. |.|.|.|....
T Consensus 77 ~~~~~~~~~g~~--v~l~v~R~~~~ 99 (107)
T 2h2b_A 77 FAVQQLRKSGKN--AKITIRRKKGG 99 (107)
T ss_dssp HHHHHHHTCCSE--EEEEEEEESCC
T ss_pred HHHHHhhCCCCE--EEEEEEECCCC
Confidence 998888866654 99999887644
No 84
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=99.38 E-value=2.4e-12 Score=102.01 Aligned_cols=83 Identities=25% Similarity=0.399 Sum_probs=70.2
Q ss_pred EEEEeccCCCCCCCCCccceEEEcCcCC-----CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487 98 HMILRKSGDRYPSASSTLGIKVIGGKLL-----EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE 172 (315)
Q Consensus 98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~-----~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav 172 (315)
.+.|.+. .+|||+|.||.+. .....|++|..|.++|+|++ | |++||+|++|||+.+.++++.+++
T Consensus 14 ~v~l~~~--------~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~ 83 (103)
T 1n7t_A 14 RVRVEKD--------PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAV 83 (103)
T ss_dssp EEEEECS--------SCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-S-CCTTCEEEEETTEECSSCCHHHHH
T ss_pred EEEEccC--------CCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-C-CCCCCEEEEECCEECCCCCHHHHH
Confidence 4566664 3899999998752 11456999999999999998 5 999999999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEEeCC
Q psy4487 173 DIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 173 ~iLk~s~~~~~V~LvV~R~~ 192 (315)
..++..+.. |.|.|.|..
T Consensus 84 ~~~~~~g~~--v~l~v~R~~ 101 (103)
T 1n7t_A 84 SLLKTFQNT--VELIIVREV 101 (103)
T ss_dssp HHHHHCCSE--EEEEEECCC
T ss_pred HHhhcCCCe--EEEEEEecC
Confidence 999977654 999999875
No 85
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=99.38 E-value=4.7e-12 Score=98.77 Aligned_cols=87 Identities=24% Similarity=0.449 Sum_probs=72.8
Q ss_pred EEEEeccCCCCCCCCCccceEEEcCcCCC---CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 98 HMILRKSGDRYPSASSTLGIKVIGGKLLE---DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~---~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
.+.+.+.. .||||+|.||.+.. ....+++|..|.++|||+++| |++||+|++|||+.+.+.++.+++..
T Consensus 6 ~v~~~~~~-------~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~ 77 (97)
T 2w4f_A 6 TLTILRQT-------GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEA 77 (97)
T ss_dssp EEEEECBT-------TBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred EEEEEeCC-------CceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHH
Confidence 34566553 69999999998642 245799999999999999988 99999999999999999999999988
Q ss_pred HHhcCCCCcEEEEEEeCCCC
Q psy4487 175 IAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~~~~ 194 (315)
++..+.. |.|.|.|....
T Consensus 78 ~~~~g~~--v~l~v~R~g~~ 95 (97)
T 2w4f_A 78 LRGAGTA--VQMRVWRERET 95 (97)
T ss_dssp HHTSCSE--EEEEEECCSSC
T ss_pred HhCCCCe--EEEEEEeCCcc
Confidence 8876544 99999987643
No 86
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=99.38 E-value=3.2e-12 Score=100.15 Aligned_cols=86 Identities=26% Similarity=0.382 Sum_probs=69.9
Q ss_pred EEEEEeccCCCCCCCCCccceEEEc-CcCC---CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIG-GKLL---EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE 172 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvG-Gk~~---~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav 172 (315)
..++|.|.. ..+|||+|.| |... .....+++|..|.++|||+++| |++||+|++|||+.+.+++++++.
T Consensus 6 r~v~l~k~~------~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~ 78 (96)
T 2ego_A 6 KVLTLEKGD------NQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIV 78 (96)
T ss_dssp EEEEEECCT------TCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTT-CCTTCEEEEETTEECTTCCHHHHH
T ss_pred EEEEEEeCC------CCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHH
Confidence 456788764 3699999998 3221 1123589999999999999988 999999999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEEeC
Q psy4487 173 DIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 173 ~iLk~s~~~~~V~LvV~R~ 191 (315)
.+|+..+. .|.|.|.+.
T Consensus 79 ~~l~~~~~--~v~l~v~~~ 95 (96)
T 2ego_A 79 DIIKASGN--VLRLETLYG 95 (96)
T ss_dssp HHHHHTTT--EEEEEEECC
T ss_pred HHHHhCCC--eEEEEEEEC
Confidence 99999865 499988764
No 87
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=99.38 E-value=2.3e-12 Score=99.98 Aligned_cols=72 Identities=22% Similarity=0.451 Sum_probs=63.4
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~ 191 (315)
...|||.+.+ |+||..|.++|+|+++|+|++||+|++|||+++.+++|++++++|+.+++. |.|+|.+.
T Consensus 12 ~~~~G~~~~~---------gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~--v~L~v~~~ 80 (88)
T 3e17_A 12 NEEYGLRLGS---------QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGK--LQLVVLRD 80 (88)
T ss_dssp BCCCCEEEEE---------EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTE--EEEEECCC
T ss_pred CCCCCEEEeC---------CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe--EEEEEeCC
Confidence 4589999976 699999999999999999999999999999999999999999999998865 99988776
Q ss_pred CCC
Q psy4487 192 IQP 194 (315)
Q Consensus 192 ~~~ 194 (315)
...
T Consensus 81 ~~~ 83 (88)
T 3e17_A 81 LEH 83 (88)
T ss_dssp ---
T ss_pred Ccc
Confidence 543
No 88
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=99.38 E-value=2.1e-12 Score=99.52 Aligned_cols=75 Identities=23% Similarity=0.373 Sum_probs=66.7
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.+|||++.||.+. ..+++|..|.++|+|+++| |++||+|++|||+++.++++.++..+++..+.. |.|.|.|..
T Consensus 13 ~~~G~~l~gg~~~---~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~--v~l~v~R~~ 86 (89)
T 2q3g_A 13 APWGFRLQGGKDF---NVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRACGER--LSLGLSRAI 86 (89)
T ss_dssp SCCCEEEEEEGGG---TEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTE--EEEEEEEEC
T ss_pred CcccEEEECcCCC---CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCE--EEEEEEeCC
Confidence 6899999998864 3589999999999999988 999999999999999999999999999887544 999998865
Q ss_pred C
Q psy4487 193 Q 193 (315)
Q Consensus 193 ~ 193 (315)
.
T Consensus 87 ~ 87 (89)
T 2q3g_A 87 T 87 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 89
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=99.38 E-value=6.2e-12 Score=103.13 Aligned_cols=88 Identities=27% Similarity=0.429 Sum_probs=73.6
Q ss_pred EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487 98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE 177 (315)
Q Consensus 98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~ 177 (315)
.+.|.+.. .+|||.|.++.....+..+++|..|.++|||+++|.|++||+|++|||+++.++++++++++|+.
T Consensus 33 ~v~l~~~~-------~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~ 105 (121)
T 2kom_A 33 NIQLKKGT-------EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRS 105 (121)
T ss_dssp EEEEECCT-------TCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHH
T ss_pred EEEEEcCC-------CcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc
Confidence 44566653 68999999987654456789999999999999988899999999999999999999999999998
Q ss_pred cCCCCcEEEEEEeCC
Q psy4487 178 SRQEPQVELIVSRRI 192 (315)
Q Consensus 178 s~~~~~V~LvV~R~~ 192 (315)
......|.|.|.|..
T Consensus 106 ~~~g~~v~l~v~R~g 120 (121)
T 2kom_A 106 TKMEGTVSLLVFRQE 120 (121)
T ss_dssp CCSSCEEEEEEEECC
T ss_pred CCCCCEEEEEEEeCC
Confidence 642234999998863
No 90
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=99.37 E-value=1.5e-12 Score=100.10 Aligned_cols=74 Identities=20% Similarity=0.364 Sum_probs=66.2
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.+|||++.||.+. ..+++|..|.++|||+++| |++||+|++|||+.+.+.++.++..+++..+.. |.|.|.|..
T Consensus 13 ~~~G~~l~~g~~~---~~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~--v~l~v~R~g 86 (88)
T 2uzc_A 13 APWGFRLQGGKDF---NMPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGS--LNMTLQRES 86 (88)
T ss_dssp SCCCEEEEEEGGG---TEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE--EEEEEECCC
T ss_pred CcccEEEECcCCC---CCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe--EEEEEEeCC
Confidence 6899999999864 3589999999999999988 999999999999999999999999999887544 999998864
No 91
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=99.37 E-value=2.2e-12 Score=102.81 Aligned_cols=85 Identities=19% Similarity=0.348 Sum_probs=71.4
Q ss_pred eeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487 94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED 173 (315)
Q Consensus 94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~ 173 (315)
.+...+.|.|.. +.+|||.+.++.+ .|++|..|.++|||+++|.|++||+|++|||+++.+++++++.+
T Consensus 11 ~~~~~v~l~K~~------~~~lG~~l~~~~~-----~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~ 79 (97)
T 2ejy_A 11 HMVRLIQFEKVT------EEPMGICLKLNEK-----QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQK 79 (97)
T ss_dssp --CEEEEEEECS------SSCCSEEEEECTT-----CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHH
T ss_pred CccEEEEEEeCC------CCCeeEEEEeCCC-----CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 345567788875 4789999987532 48999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEEEeC
Q psy4487 174 IIAESRQEPQVELIVSRR 191 (315)
Q Consensus 174 iLk~s~~~~~V~LvV~R~ 191 (315)
+|+..... |.|.|.+.
T Consensus 80 ~l~~~~~~--v~L~V~~~ 95 (97)
T 2ejy_A 80 AMKETKGM--ISLKVIPN 95 (97)
T ss_dssp HHHHCCEE--EEEEEECC
T ss_pred HHHcCCCe--EEEEEEEC
Confidence 99987544 88888754
No 92
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.37 E-value=8.2e-13 Score=104.22 Aligned_cols=87 Identities=23% Similarity=0.389 Sum_probs=73.5
Q ss_pred EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487 98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE 177 (315)
Q Consensus 98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~ 177 (315)
.+.|.+.. .||||.+.+|.+. ..+++|..|.++++|+++|.|+.||+|++|||+.+.++++.+++.+++.
T Consensus 14 ~v~l~~~~-------~g~G~~~~~~~~~---~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~ 83 (103)
T 1wfv_A 14 TVDMEKGA-------KGFGFSIRGGREY---KMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKS 83 (103)
T ss_dssp ECCEECCT-------TSSSBCCEEETTT---TEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred EEEEecCC-------CcCCEEEeccccC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 44565543 6899999998753 3589999999999999988899999999999999999999999999986
Q ss_pred cCCCCcEEEEEEeCCCCCC
Q psy4487 178 SRQEPQVELIVSRRIQPKY 196 (315)
Q Consensus 178 s~~~~~V~LvV~R~~~~~p 196 (315)
.+.. |.|.|.|.....|
T Consensus 84 ~g~~--v~l~v~R~~~~~~ 100 (103)
T 1wfv_A 84 GGRR--VRLLLKRGTGSGP 100 (103)
T ss_dssp HCSE--ECEEEECTTCSSC
T ss_pred CCCe--EEEEEEECCCCCC
Confidence 6654 9999999876554
No 93
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.37 E-value=1.1e-11 Score=99.13 Aligned_cols=88 Identities=24% Similarity=0.409 Sum_probs=74.4
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCC---CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLE---DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE 172 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~---~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav 172 (315)
...+.|.+.. .||||.|.||++.. ....+++|..|.+++||+++| |++||+|++|||+.+.++++.+++
T Consensus 16 ~~~~~l~~~~-------~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~ 87 (110)
T 1x5q_A 16 ELTLTILRQT-------GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAV 87 (110)
T ss_dssp EEEEEEECSS-------SSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHH
T ss_pred eEEEEEecCC-------CeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHH
Confidence 4456677653 69999999998642 245799999999999999988 999999999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEEeCCC
Q psy4487 173 DIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 173 ~iLk~s~~~~~V~LvV~R~~~ 193 (315)
..++..+.. |.|.|.|+..
T Consensus 88 ~~~~~~g~~--v~l~v~R~g~ 106 (110)
T 1x5q_A 88 EALRGAGTA--VQMRVWRESG 106 (110)
T ss_dssp HHHHSCCSE--EEEEEEECSS
T ss_pred HHhhCCCCe--EEEEEEECCc
Confidence 999885544 9999999754
No 94
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=99.36 E-value=4.2e-12 Score=99.18 Aligned_cols=87 Identities=26% Similarity=0.352 Sum_probs=72.6
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
..+.|.|.. .+|||.+.+.... ....|++|..|.++|||+++| |++||+|++|||+.+.+++++++..+|+
T Consensus 5 r~v~l~k~~-------~~~G~~l~~~~~~-~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~ 75 (96)
T 2v90_A 5 RCLHLEKGP-------QGFGFLLREEKGL-DGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQ 75 (96)
T ss_dssp EEEEEECBT-------TBSCEEEEEEECT-TSCEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHH
T ss_pred EEEEEEeCC-------CcccEEEEeccCC-CCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 356777764 5999999984432 234689999999999999988 9999999999999999999999999999
Q ss_pred hcCCCCcEEEEEEeCCCC
Q psy4487 177 ESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 177 ~s~~~~~V~LvV~R~~~~ 194 (315)
..+. .|.|.|.|....
T Consensus 76 ~~g~--~v~l~v~r~~~~ 91 (96)
T 2v90_A 76 GQGS--CVSLTVVDPEAD 91 (96)
T ss_dssp TTTT--EEEEEEECCCTT
T ss_pred cCCC--EEEEEEECCCCc
Confidence 8743 499999987644
No 95
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=99.36 E-value=7.5e-12 Score=100.19 Aligned_cols=86 Identities=24% Similarity=0.288 Sum_probs=70.9
Q ss_pred EEEEeccCCCCCCCCCccceEEEcCcCCC---------CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCH
Q psy4487 98 HMILRKSGDRYPSASSTLGIKVIGGKLLE---------DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168 (315)
Q Consensus 98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~---------~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~ 168 (315)
.++|.|.. ..||||.|.|+.... ....|++|..|.++|+|+++| |+.||+|++|||+.+.+++|
T Consensus 10 ~v~l~~~~------~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~ 82 (109)
T 1q3o_A 10 TVLLQKKD------SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGH 82 (109)
T ss_dssp EEEEECCT------TSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCH
T ss_pred EEEEEECC------CCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence 45566543 469999999987531 113489999999999999988 99999999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 169 QDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 169 ~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
++++.+|+..+.. |.|+|.|..
T Consensus 83 ~~~~~~l~~~~~~--v~l~v~~~~ 104 (109)
T 1q3o_A 83 RQVVNMIRQGGNT--LMVKVVMVT 104 (109)
T ss_dssp HHHHHHHHHTTTE--EEEEEEEEE
T ss_pred HHHHHHHHhCCCE--EEEEEEECC
Confidence 9999999987544 899887764
No 96
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=99.35 E-value=3.5e-12 Score=100.16 Aligned_cols=84 Identities=21% Similarity=0.345 Sum_probs=71.6
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
....+.|.+.. ..||||.+.+. ..|++|..|.++|+|+++|+|++||+|++|||+++.++++.+++.+
T Consensus 8 ~~~~v~l~~~~------~~glG~~~~~~------~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~ 75 (96)
T 2qkv_A 8 EKFNVDLMKKA------GKELGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYAL 75 (96)
T ss_dssp CCEEEEEECBT------TBCCCEEEEEC------SSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred ceEEEEEEeCC------CCCccEEEEeC------CCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 34456776543 46899999872 2589999999999999988899999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEEeCC
Q psy4487 175 IAESRQEPQVELIVSRRI 192 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~~ 192 (315)
++...+. |.|.|.|..
T Consensus 76 ~~~~~~~--v~l~v~R~~ 91 (96)
T 2qkv_A 76 FKGANGK--VSMEVTRPK 91 (96)
T ss_dssp HHTCSSE--EEEEEECCC
T ss_pred HhcCCCc--EEEEEEeCC
Confidence 9988765 999999864
No 97
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=4.8e-12 Score=98.75 Aligned_cols=74 Identities=27% Similarity=0.393 Sum_probs=66.3
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.+|||++.||.+. ..+++|..|.+++||+++| |++||+|++|||+.+.++++.+++.+++..+.. |.|.|.|..
T Consensus 18 ~~~G~~l~gg~~~---~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~--v~l~v~R~g 91 (94)
T 2eeg_A 18 SPWGFRLVGGRDF---SAPLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGCHDH--LTLSVSSGP 91 (94)
T ss_dssp SCCSCCEECCTTT---TSCCEECCCCSSSHHHHTT-CCTTCEEEEETTEETTTCCHHHHHHHHHTCCSC--EEEEEECCS
T ss_pred CccCEEEECccCC---CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe--EEEEEEeCC
Confidence 5899999999875 3579999999999999887 999999999999999999999999999886554 999998865
No 98
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=99.35 E-value=9.2e-12 Score=96.62 Aligned_cols=88 Identities=25% Similarity=0.346 Sum_probs=71.5
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCC-CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLE-DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~-~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
...+.|.+.. .+|||.+.++.... ....+++|..|.++++|+++|.|++||+|++|||+.+.++++.+++.+
T Consensus 5 ~~~v~l~~~~-------~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~ 77 (97)
T 2iwn_A 5 TFDVELTKNV-------QGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEV 77 (97)
T ss_dssp EEEEEEECBT-------TBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHH
T ss_pred EEEEEEecCC-------CCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 3445666543 68999999986431 234689999999999999988899999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEEeCC
Q psy4487 175 IAESRQEPQVELIVSRRI 192 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~~ 192 (315)
++..+.. |.|.|.|..
T Consensus 78 ~~~~~~~--v~l~v~r~g 93 (97)
T 2iwn_A 78 LRHTGQT--VLLTLMRRG 93 (97)
T ss_dssp HHTCCSE--EEEEEEEEE
T ss_pred HHcCCCe--EEEEEEeCC
Confidence 9885544 999998764
No 99
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=99.34 E-value=7.5e-12 Score=97.08 Aligned_cols=81 Identities=20% Similarity=0.321 Sum_probs=69.4
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
+..+.|.|.. .||||.+.++ .+++|..|.++|+|+++| |+.||+|++|||+.+.++++.++..+|
T Consensus 4 ~r~v~l~~~~-------~g~G~~l~~~-------~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l 68 (91)
T 2f5y_A 4 YRQITIPRGK-------DGFGFTICCD-------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEI 68 (91)
T ss_dssp EEEEEEECBT-------TBTSEEEECS-------SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred eEEEEEEeCC-------CCccEEEecC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4556777764 6899999874 368999999999999988 999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCCC
Q psy4487 176 AESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~~ 193 (315)
+..+.. |.|+|.|...
T Consensus 69 ~~~~~~--v~l~v~R~~~ 84 (91)
T 2f5y_A 69 RSCPSE--IILLVWRMVP 84 (91)
T ss_dssp HTCSSE--EEEEEEECC-
T ss_pred HcCCCe--EEEEEEeCCC
Confidence 886654 9999998764
No 100
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=99.34 E-value=1.1e-11 Score=101.96 Aligned_cols=85 Identities=15% Similarity=0.213 Sum_probs=70.0
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
.+..+.|.|.. .||||+|.++. .|.+|.+|.+ +|+ .+.|++||+|++|||+++.+++|+|++++
T Consensus 12 ~~~~V~L~Kg~-------~G~GFsI~~~~------~g~~V~~I~~--~~~-~aGL~~GD~Il~VNG~~v~~~~h~evv~~ 75 (113)
T 3soe_A 12 LLVTIPLIKGP-------KGFGFAIADSP------TGQKVKMILD--SQW-CQGLQKGDIIKEIYHQNVQNLTHLQVVEV 75 (113)
T ss_dssp EEEEEEEECBT-------TBSSEEEEEET------TEEEEEEESC--GGG-STTCCTTCEEEEETTEECTTSCHHHHHHH
T ss_pred CEEEEEEEECC-------CcccEEEeCCC------CCcEEEEecC--hHH-hCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 45677888864 69999997653 3678999998 344 56699999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEEeCCCCC
Q psy4487 175 IAESRQEPQVELIVSRRIQPK 195 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~~~~~ 195 (315)
|++++...+|.|+|.|.....
T Consensus 76 lk~~~~G~~v~L~V~R~g~~~ 96 (113)
T 3soe_A 76 LKQFPVGADVPLLILRGGPPS 96 (113)
T ss_dssp HHHSCTTCEEEEEEEESSCC-
T ss_pred HHcCCCCCEEEEEEEECCccC
Confidence 999764446999999988654
No 101
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=99.34 E-value=5.5e-12 Score=98.02 Aligned_cols=83 Identities=25% Similarity=0.454 Sum_probs=69.2
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
..+.|.|.. .+|||.+.++... .+++|..|.++|||+++| |++||+|++|||+.+.+++|++++.+|+
T Consensus 7 r~v~l~~~~-------~~~G~~l~~~~~~----~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~ 74 (95)
T 3r68_A 7 RVVVIKKGS-------NGYGFYLRAGPEQ----KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIR 74 (95)
T ss_dssp EEEEEECBT-------TBCSCEEEEC--C----CSEEEECCCTTSHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHH
T ss_pred EEEEEecCC-------CcccEEEEecCCC----CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 346677753 6999999987653 489999999999999998 9999999999999999999999999999
Q ss_pred hcCCCCcEEEEEEeCCC
Q psy4487 177 ESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 177 ~s~~~~~V~LvV~R~~~ 193 (315)
..+.. +.+++.|...
T Consensus 75 ~~~~~--~~~~~~r~~~ 89 (95)
T 3r68_A 75 KGGDQ--TTLLVLDKEL 89 (95)
T ss_dssp TTTTE--EEEEEEECC-
T ss_pred hCCCe--EEEEEECCcc
Confidence 97655 7777766553
No 102
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=99.34 E-value=4.7e-12 Score=110.34 Aligned_cols=76 Identities=26% Similarity=0.410 Sum_probs=67.6
Q ss_pred CccceEEEcCcCC-----CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEE
Q psy4487 113 STLGIKVIGGKLL-----EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187 (315)
Q Consensus 113 ~gLGfsIvGGk~~-----~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~Lv 187 (315)
.||||+|.||++. .....|++|..|.++|+|++ | |++||+|++|||+.+.+++|.+++.+++..+.. |.|.
T Consensus 2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~--v~l~ 77 (195)
T 2qbw_A 2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNT--VELI 77 (195)
T ss_dssp CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSE--EEEE
T ss_pred CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe--EEEE
Confidence 5899999998752 23567999999999999998 6 999999999999999999999999999998765 9999
Q ss_pred EEeCC
Q psy4487 188 VSRRI 192 (315)
Q Consensus 188 V~R~~ 192 (315)
|.|..
T Consensus 78 v~r~~ 82 (195)
T 2qbw_A 78 IVREV 82 (195)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 99943
No 103
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=99.33 E-value=2.1e-12 Score=100.11 Aligned_cols=83 Identities=31% Similarity=0.426 Sum_probs=68.1
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
..+.|.|.. .+|||.+.++.. ..+++|..|.++|||+++| |++||+|++|||+++.+++++++.++|+
T Consensus 5 r~v~l~k~~-------~~~G~~l~~~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~ 72 (91)
T 2vsp_A 5 KLCRLAKGE-------NGYGFHLNAIRG----LPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQ 72 (91)
T ss_dssp EEEEEECBT-------TBTSCCCBCCTT----CSCCBC-CCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHT
T ss_pred EEEEEEeCC-------CcccEEEEeccC----CCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 346677764 589999988654 3588999999999999988 9999999999999999999999999998
Q ss_pred hcCCCCcEEEEEEeCCC
Q psy4487 177 ESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 177 ~s~~~~~V~LvV~R~~~ 193 (315)
..+ ..|.|.|.|...
T Consensus 73 ~~g--~~v~l~v~r~~~ 87 (91)
T 2vsp_A 73 SSG--KNVTLLVCGKKA 87 (91)
T ss_dssp TSC--SEEEEEEEC---
T ss_pred cCC--CEEEEEEEeCCc
Confidence 874 349999988754
No 104
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=99.33 E-value=1.3e-11 Score=101.72 Aligned_cols=88 Identities=30% Similarity=0.514 Sum_probs=72.0
Q ss_pred EEEEeccCCCCCCCCCccceEEEcCcCCC------CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHH
Q psy4487 98 HMILRKSGDRYPSASSTLGIKVIGGKLLE------DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171 (315)
Q Consensus 98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~------~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ea 171 (315)
.+.+.|.. ..+|||.+.|+.... ....|++|..|.++|||+++|.|++||+|++|||+++.+++++++
T Consensus 27 ~v~l~k~~------~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~ 100 (123)
T 2iwq_A 27 RVELWREP------SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQA 100 (123)
T ss_dssp EEEECCCT------TSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHH
T ss_pred EEEEEecC------CCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence 34565543 368999999876531 123589999999999999998899999999999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEEeCCC
Q psy4487 172 EDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 172 v~iLk~s~~~~~V~LvV~R~~~ 193 (315)
+++|+..+.. |.|.|.|...
T Consensus 101 ~~~l~~~~~~--v~l~v~r~~~ 120 (123)
T 2iwq_A 101 VEAIRKAGNP--VVFMVQSIIS 120 (123)
T ss_dssp HHHHHHCCSS--EEEEEECCCC
T ss_pred HHHHHcCCCe--EEEEEEECCc
Confidence 9999988665 9999988653
No 105
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.33 E-value=9.8e-12 Score=100.53 Aligned_cols=85 Identities=26% Similarity=0.438 Sum_probs=73.0
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
.+..+.|.|.. ..+|||.+.++ ..+++|..|.++++|+++|.|++||+|++|||+.+.++++++++.+
T Consensus 25 ~~~~v~l~k~~------~~~lG~~i~~~------~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~ 92 (113)
T 1va8_A 25 TVKIVRIEKAR------DIPLGATVRNE------MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDL 92 (113)
T ss_dssp ECEEEEEEECT------TCCCCEEEEEC------SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred ceEEEEEEeCC------CCceeEEEEeC------CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 45667888875 35899999876 2589999999999999999559999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEEeCCC
Q psy4487 175 IAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~~~ 193 (315)
|+..... |.|+|.|...
T Consensus 93 l~~~~~~--v~l~v~r~~~ 109 (113)
T 1va8_A 93 LSDMHGT--LTFVLIPSSG 109 (113)
T ss_dssp HHHCCEE--EEEEEECCCC
T ss_pred HHcCCCe--EEEEEEECCc
Confidence 9987754 9999987653
No 106
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=99.33 E-value=1.3e-11 Score=97.49 Aligned_cols=79 Identities=30% Similarity=0.540 Sum_probs=65.7
Q ss_pred CccceEEEcCcCCCC------CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEE
Q psy4487 113 STLGIKVIGGKLLED------GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~------g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~L 186 (315)
..|||.+.|+..... ...|++|..|.++|||+++|.|++||+|++|||+++.+++++++.++|+..++. |.|
T Consensus 16 ~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~--v~l 93 (103)
T 2fcf_A 16 KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNP--VVF 93 (103)
T ss_dssp CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSS--EEE
T ss_pred CceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc--EEE
Confidence 589999999765321 235899999999999999888999999999999999999999999999988654 999
Q ss_pred EEEeCCC
Q psy4487 187 IVSRRIQ 193 (315)
Q Consensus 187 vV~R~~~ 193 (315)
.|.|...
T Consensus 94 ~v~r~~~ 100 (103)
T 2fcf_A 94 MVQSIIS 100 (103)
T ss_dssp EEECCCC
T ss_pred EEEECCC
Confidence 9988653
No 107
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=99.33 E-value=3.3e-12 Score=97.18 Aligned_cols=80 Identities=24% Similarity=0.461 Sum_probs=68.5
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
...+.|.|.. .||||.+.++ .+++|..|.++|+|+++| |+.||+|++|||+.+.+.+++++..++
T Consensus 3 ~r~v~l~~~~-------~g~G~~~~~~-------~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l 67 (83)
T 2kv8_A 3 VRSVEVARGR-------AGYGFTLSGQ-------APCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLI 67 (83)
T ss_dssp EEEEEECCCS-------SCCSCBCCCS-------SSCBCCBCCTTSTTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred cEEEEEEeCC-------CcccEEEEcC-------CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 3456777764 6899998764 279999999999999988 999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCC
Q psy4487 176 AESRQEPQVELIVSRRI 192 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~ 192 (315)
+..... |.|.|.|..
T Consensus 68 ~~~~~~--v~l~v~R~~ 82 (83)
T 2kv8_A 68 GKCSGV--LHMVIAEGV 82 (83)
T ss_dssp TTCSSC--EEEEEECCC
T ss_pred HhCCCe--EEEEEEcCC
Confidence 877655 999998864
No 108
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.33 E-value=3.8e-12 Score=102.69 Aligned_cols=87 Identities=30% Similarity=0.454 Sum_probs=73.7
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
..+.|.+.. .+|||.|.||.+.. ..+++|..|.++|+|+++|+|++||+|++|||+.+.++++.+++.+|+
T Consensus 19 ~~v~l~~~~-------~glG~~l~~~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~ 89 (116)
T 2dm8_A 19 MIIEISKGR-------SGLGLSIVGGKDTP--LNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALR 89 (116)
T ss_dssp EEEEEECCS-------SCCCCCCBCCTTSS--CSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHH
T ss_pred EEEEEEECC-------CcccEEEeCCCCCC--cCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 345666653 68999999987542 248999999999999999889999999999999999999999999999
Q ss_pred hcCCCCcEEEEEEeCCCC
Q psy4487 177 ESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 177 ~s~~~~~V~LvV~R~~~~ 194 (315)
..... |.|.|.|....
T Consensus 90 ~~~~~--v~l~v~R~~~~ 105 (116)
T 2dm8_A 90 QTPQK--VRLVVYRDEAH 105 (116)
T ss_dssp TCCSE--EEEEEECCSSC
T ss_pred hCCCe--EEEEEEeCCcc
Confidence 87744 99999887644
No 109
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=99.33 E-value=9.8e-12 Score=96.15 Aligned_cols=75 Identities=24% Similarity=0.415 Sum_probs=66.6
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.+|||++.||.+. ..+++|..|.++|||+++| |++||+|++|||+++.+.++.++..+++..+. .|.|.|.|..
T Consensus 13 ~~~G~~l~~~~~~---~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~--~v~l~v~R~g 86 (91)
T 2pkt_A 13 GPWGFRLVGGKDF---EQPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKGCTD--NLTLTVARSE 86 (91)
T ss_dssp SCCSEEEEEEGGG---TEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSS--EEEEEEEEEC
T ss_pred CCCCEEEEccCCC---CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC--eEEEEEEECC
Confidence 6899999998764 2589999999999999888 99999999999999999999999999998443 4999999875
Q ss_pred C
Q psy4487 193 Q 193 (315)
Q Consensus 193 ~ 193 (315)
.
T Consensus 87 ~ 87 (91)
T 2pkt_A 87 H 87 (91)
T ss_dssp C
T ss_pred c
Confidence 4
No 110
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=2.2e-11 Score=96.03 Aligned_cols=91 Identities=27% Similarity=0.453 Sum_probs=76.4
Q ss_pred CCCceeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHH
Q psy4487 90 ADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169 (315)
Q Consensus 90 ~~g~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ 169 (315)
.+.+..+..+.|.|.. ...|||.+.++.+. ..|++|..|.++++|+++| |++||+|++|||+.+.+.++.
T Consensus 5 s~~~~~~~~v~l~~~~------~~~lG~~~~~~~~~---~~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~ 74 (100)
T 2eeh_A 5 SSGSDIIHSVRVEKSP------AGRLGFSVRGGSEH---GLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMG 74 (100)
T ss_dssp CSCCCEECCEEECCCS------SSSCSEEEECCTTT---TCCEEEEEECTTSHHHHHT-CCSSCEEEEETTEECSSCCHH
T ss_pred CCCCCeEEEEEEEECC------CCCccEEEEccccC---CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHH
Confidence 3445667778888875 24699999997653 3589999999999999988 999999999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 170 DVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 170 eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
+++..++. ... |.|.|.|...
T Consensus 75 ~~~~~~~~-~~~--v~l~v~R~g~ 95 (100)
T 2eeh_A 75 SAVKVLTS-SSR--LHMMVRRMGS 95 (100)
T ss_dssp HHHHHHHS-CSS--EEEEEEECSC
T ss_pred HHHHhhcC-CCE--EEEEEEECCc
Confidence 99999987 434 9999998764
No 111
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=99.32 E-value=1.2e-11 Score=100.68 Aligned_cols=86 Identities=31% Similarity=0.501 Sum_probs=72.5
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
...++|.|.. ..+|||.+.||.+. ..+++|..|.++|+|+++|.|++||+|++|||+.+.+.+++++.++|
T Consensus 25 ~~~V~l~~~~------~~~lG~~l~~~~~~---~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l 95 (114)
T 2gzv_A 25 PGKVTLQKDA------QNLIGISIGGGAQY---CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMI 95 (114)
T ss_dssp CEEEEEECCT------TSCCSEEEEECCC-----CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred CEEEEEEECC------CCcEeEEEEeCCCC---CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4567788765 35699999998753 25899999999999999888999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCC
Q psy4487 176 AESRQEPQVELIVSRRI 192 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~ 192 (315)
+...+. |.|.|.+..
T Consensus 96 ~~~~~~--v~l~v~~~~ 110 (114)
T 2gzv_A 96 QEVKGE--VTIHYNKLQ 110 (114)
T ss_dssp HHCCSE--EEEEEECCC
T ss_pred HcCCCe--EEEEEEecc
Confidence 987754 888886643
No 112
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=99.32 E-value=1e-11 Score=100.80 Aligned_cols=86 Identities=27% Similarity=0.489 Sum_probs=74.2
Q ss_pred eeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487 94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED 173 (315)
Q Consensus 94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~ 173 (315)
+....+.|.|.. .||||.+.|+.+ ..|++|..|.++|+|+++|.|++||+|++|||+.+.+.++.+++.
T Consensus 13 ~~~~~v~l~k~~-------~glG~~l~~~~~----~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~ 81 (119)
T 1tp5_A 13 REPRRIVIHRGS-------TGLGFNIVGGED----GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAI 81 (119)
T ss_dssp CSCEEEEEECTT-------SCCCEEEEECGG----GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHH
T ss_pred CccEEEEEEECC-------CCccEEEecCCC----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 446677888764 579999999864 258999999999999998889999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEEEeCC
Q psy4487 174 IIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 174 iLk~s~~~~~V~LvV~R~~ 192 (315)
.++..+.. |.|+|.|..
T Consensus 82 ~~~~~~~~--v~l~v~r~~ 98 (119)
T 1tp5_A 82 ALKNAGQT--VTIIAQYKP 98 (119)
T ss_dssp HHHTSCSE--EEEEEEECH
T ss_pred HHHcCCCe--EEEEEEECC
Confidence 99887655 999998854
No 113
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=99.30 E-value=1.3e-11 Score=98.04 Aligned_cols=82 Identities=29% Similarity=0.404 Sum_probs=70.4
Q ss_pred EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487 98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE 177 (315)
Q Consensus 98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~ 177 (315)
.+.|.|.. +.+|||.+.++.. ..|++|..|.++|||+++| |+.||+|++|||+++.++++++++.+|+.
T Consensus 4 ~v~l~~~~------~~~~G~~l~~~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~ 72 (106)
T 3ngh_A 4 ESKLSKQE------GQNYGFFLRIEKD----TDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRK 72 (106)
T ss_dssp EEEEECCT------TCCCCCEEECCTT----CCSCEEECCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHHH
T ss_pred EEEEEeCC------CCeeCEEEEEEeC----CCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 45677664 4689999998754 2589999999999999988 99999999999999999999999999997
Q ss_pred cCCCCcEEEEEEeCC
Q psy4487 178 SRQEPQVELIVSRRI 192 (315)
Q Consensus 178 s~~~~~V~LvV~R~~ 192 (315)
.+.. |.|.|.|..
T Consensus 73 ~g~~--v~l~v~r~~ 85 (106)
T 3ngh_A 73 SGNS--VTLLVLDGD 85 (106)
T ss_dssp TTTE--EEEEEECHH
T ss_pred CCCE--EEEEEEECC
Confidence 6654 999998865
No 114
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=7.7e-12 Score=98.93 Aligned_cols=76 Identities=26% Similarity=0.382 Sum_probs=66.5
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.+|||++.||.+.. .+++|..|.+++||+++|.|++||+|++|||+++.+. +.+++.+++..... |.|+|.|..
T Consensus 21 ~~~G~~~~gg~~~~---~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~~--v~l~v~R~~ 94 (100)
T 2edp_A 21 APWGFTLKGGLEHC---EPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSFRI--LKLIVRRRN 94 (100)
T ss_dssp SCCCCCEEEEGGGT---EEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCCSS--CEEEEEECC
T ss_pred CCcCEEEeccCCCC---CCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCCCe--EEEEEEeCC
Confidence 58999999987642 4799999999999999956999999999999999986 89999999987654 999999976
Q ss_pred CC
Q psy4487 193 QP 194 (315)
Q Consensus 193 ~~ 194 (315)
..
T Consensus 95 ~~ 96 (100)
T 2edp_A 95 SG 96 (100)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 115
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.30 E-value=1.2e-11 Score=97.84 Aligned_cols=83 Identities=25% Similarity=0.466 Sum_probs=70.8
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
..++|.|.. .||||.+.++.+ ..|++|..|.++|+|+++| |+.||+|++|||+.+.++++++++.+|+
T Consensus 8 r~v~l~k~~-------~g~G~~l~~~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~ 75 (102)
T 2d90_A 8 RVVVIKKGS-------NGYGFYLRAGPE----QKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIR 75 (102)
T ss_dssp EEEEEECCS-------SSSSCEEEECSS----SSSEEEECCCTTSTTTTTT-CCTTCEEEEESSCBCTTSCHHHHHHHHH
T ss_pred EEEEEeeCC-------CCccEEEEeecC----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 456777764 689999998653 3589999999999999988 9999999999999999999999999998
Q ss_pred hcCCCCcEEEEEEeCCC
Q psy4487 177 ESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 177 ~s~~~~~V~LvV~R~~~ 193 (315)
..+.. |.|.|.|...
T Consensus 76 ~~g~~--v~l~v~r~~~ 90 (102)
T 2d90_A 76 KGGDQ--TTLLVLDKEA 90 (102)
T ss_dssp HSTTE--EEEEECSTTC
T ss_pred cCCCE--EEEEEEECCC
Confidence 86544 9999977653
No 116
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.30 E-value=4.9e-12 Score=98.71 Aligned_cols=77 Identities=23% Similarity=0.402 Sum_probs=68.3
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~ 191 (315)
..+|||++.||.+. ..|++|..|.+++||+++| |++||+|++|||+.+.+++|+++.++|+..... |.|.|.|.
T Consensus 15 ~~~lG~~l~~g~~~---~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~--v~l~v~R~ 88 (94)
T 1vb7_A 15 PAPWGFRISGGRDF---HTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASP--LRLQLDRS 88 (94)
T ss_dssp SSCCSBCCEEETTT---TEEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSS--EEEEEECC
T ss_pred CCCccEEEecccCC---CCCeEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc--EEEEEEEC
Confidence 36899999998764 3589999999999999887 999999999999999999999999999987744 99999997
Q ss_pred CCC
Q psy4487 192 IQP 194 (315)
Q Consensus 192 ~~~ 194 (315)
...
T Consensus 89 g~~ 91 (94)
T 1vb7_A 89 SGP 91 (94)
T ss_dssp CCC
T ss_pred CcC
Confidence 643
No 117
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=6.7e-12 Score=97.87 Aligned_cols=72 Identities=19% Similarity=0.318 Sum_probs=64.2
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~ 191 (315)
..+|||.+.+. ..+++|..|.++++|+++|.|++||+|++|||+++ +.+++++.++|+..... |.|.|.|.
T Consensus 17 ~~~lG~~i~~~------~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~--v~l~v~~~ 87 (91)
T 2e7k_A 17 GEHLGVTFRVE------GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGS--VILKILSG 87 (91)
T ss_dssp TCCCCEEEEES------SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSS--BCEEEECC
T ss_pred CCcEeEEEEec------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCe--EEEEEEEC
Confidence 47899999982 25899999999999999888999999999999999 99999999999987654 89988875
Q ss_pred C
Q psy4487 192 I 192 (315)
Q Consensus 192 ~ 192 (315)
.
T Consensus 88 ~ 88 (91)
T 2e7k_A 88 P 88 (91)
T ss_dssp S
T ss_pred C
Confidence 4
No 118
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.29 E-value=1.3e-11 Score=102.92 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=71.1
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
+..+.|.+.. .||||.+.+. ..+++|..|.++|||+++|.|++||+|++|||+.+.+.+|++++++|
T Consensus 28 ~~~~~l~k~~-------~glG~~i~~~------~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l 94 (126)
T 1wif_A 28 VIQTKLTVGN-------LGLGLVVIQN------GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLL 94 (126)
T ss_dssp EEEEEEECCT-------TCCCCCEEEE------TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHH
T ss_pred eEEEEEecCC-------ceEeEEEEcC------CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHH
Confidence 4455677654 6899999873 24799999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCC
Q psy4487 176 AESRQEPQVELIVSRRI 192 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~ 192 (315)
+.......|.|.|.|+.
T Consensus 95 ~~~~~G~~v~l~V~R~~ 111 (126)
T 1wif_A 95 QNITIGTVLQIKAYRGF 111 (126)
T ss_dssp TSCCSSCEEEEEEESSS
T ss_pred hcCCCCCEEEEEEEECC
Confidence 98543345999999983
No 119
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.29 E-value=2.2e-11 Score=106.74 Aligned_cols=94 Identities=20% Similarity=0.356 Sum_probs=79.1
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCC-CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLE-DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED 173 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~-~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~ 173 (315)
...+++|.|.. ..||||++.||.+.. ....+++|..|.++|||+++|.|+.||+|++|||+.+.+++|+++..
T Consensus 6 ~~~~v~l~~~~------~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~ 79 (196)
T 1p1d_A 6 ETTEVVLTADP------VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQ 79 (196)
T ss_dssp EEEEEEEECBT------TTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHH
T ss_pred EEEEEEEEeCC------CCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 45567888765 479999999997642 24678999999999999998889999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEEEeCCCC
Q psy4487 174 IIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 174 iLk~s~~~~~V~LvV~R~~~~ 194 (315)
+|+.......|.|.|.|....
T Consensus 80 ~l~~~~~g~~v~l~v~R~~~~ 100 (196)
T 1p1d_A 80 LLRDSSITSKVTLEIEFDVAE 100 (196)
T ss_dssp HHHTCCSSSEEEEEEEECSCS
T ss_pred HHHhCCCCCeEEEEEEecCCC
Confidence 999885223599999987753
No 120
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.28 E-value=4.1e-12 Score=100.74 Aligned_cols=75 Identities=21% Similarity=0.359 Sum_probs=66.8
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.+|||+|.||.+. ..+++|..|.++|+|+++| |++||+|++|||+.+.++++.+++.+++..... |.|.|.|..
T Consensus 15 ~~~G~~l~gg~~~---~~~v~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~--v~l~v~R~g 88 (103)
T 1wf7_A 15 APWGFRLQGGKDF---NMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGS--LNMTLQRAS 88 (103)
T ss_dssp SCCSCCEEEETTT---TEEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCSSE--EEEEECCCS
T ss_pred CccCEEEeccccC---CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe--EEEEEEeCC
Confidence 6899999999865 3579999999999999988 999999999999999999999999999887544 999998865
Q ss_pred C
Q psy4487 193 Q 193 (315)
Q Consensus 193 ~ 193 (315)
.
T Consensus 89 ~ 89 (103)
T 1wf7_A 89 A 89 (103)
T ss_dssp C
T ss_pred C
Confidence 4
No 121
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.28 E-value=8.1e-12 Score=100.02 Aligned_cols=87 Identities=26% Similarity=0.498 Sum_probs=74.5
Q ss_pred ceeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHH
Q psy4487 93 KYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE 172 (315)
Q Consensus 93 ~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav 172 (315)
......++|.|.. .+|||.|.++.+ ..+++|..|.++++|+++|.|++||+|++|||+.+.+.++.+++
T Consensus 13 ~~~~~~v~l~k~~-------~glG~~l~~~~~----~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~ 81 (113)
T 1um7_A 13 AREPRKIILHKGS-------TGLGFNIVGGED----GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAA 81 (113)
T ss_dssp CCSEEEEEEECCS-------SCSSBCCBCCST----TCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHH
T ss_pred CCceEEEEEEECC-------CcccEEEEeccC----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 3456778888764 689999998864 35899999999999999888999999999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEEeCC
Q psy4487 173 DIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 173 ~iLk~s~~~~~V~LvV~R~~ 192 (315)
.+++..... |.|+|.|..
T Consensus 82 ~~~~~~~~~--v~l~v~r~~ 99 (113)
T 1um7_A 82 AALKRAGQS--VTIVAQYRP 99 (113)
T ss_dssp HHHHSCCSE--EEEEEECCH
T ss_pred HHHHhCCCc--EEEEEEECc
Confidence 999876644 999998754
No 122
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.28 E-value=2e-11 Score=107.00 Aligned_cols=81 Identities=22% Similarity=0.298 Sum_probs=70.9
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCC--CCHHHHHHHHHhcCCCCcEEEEEE
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRG--KSFQDVEDIIAESRQEPQVELIVS 189 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g--~t~~eav~iLk~s~~~~~V~LvV~ 189 (315)
..+|||+|.||.+...+ .|++|..|.++|+|+++|+|+.||+|++|||+.+.+ ++|.+++.+++..... .|.|.|.
T Consensus 28 ~~~lG~~i~~g~~~~~~-~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~~~-~v~l~v~ 105 (206)
T 3r0h_A 28 KKPMGVIVCGGKNNHVT-TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEK-AVTLTVF 105 (206)
T ss_dssp TSCCCEEEECCSSSSCC-SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHSCCSS-EEEEEEE
T ss_pred CCCcCEEEecccCCCCC-CCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHhcCCC-ceEEEEE
Confidence 37999999999976432 589999999999999999999999999999999999 9999999999887642 3899999
Q ss_pred eCCCC
Q psy4487 190 RRIQP 194 (315)
Q Consensus 190 R~~~~ 194 (315)
|....
T Consensus 106 R~~~~ 110 (206)
T 3r0h_A 106 RADPP 110 (206)
T ss_dssp CCSSC
T ss_pred ecccC
Confidence 87654
No 123
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=99.28 E-value=4.2e-11 Score=91.98 Aligned_cols=83 Identities=23% Similarity=0.400 Sum_probs=66.1
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
+..+.|.|.. .||||.+.++.+ ..+++|..+ +++||+ +| |++||+|++|||+.+.++++++++.+|
T Consensus 4 ~~~v~l~k~~-------~g~G~~~~~~~~----~~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~~v~~~~~~~~~~~l 69 (88)
T 3bpu_A 4 LITVHIVKGP-------MGFGFTIADSPG----GGGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKKNVQALTHNQVVDML 69 (88)
T ss_dssp EEEEEEECBT-------TBSSCEEEECTT----SSSEEEEEC-CC--CC-TT-CCTTCEEEEETTEECTTSCHHHHHHHH
T ss_pred EEEEEEEcCC-------CceeEEEEecCC----CCcEEEEEe-cCChhH-hC-CCCCCEEEEECCEEcCCCCHHHHHHHH
Confidence 4566777764 699999997643 258999997 999999 65 999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCC
Q psy4487 176 AESRQEPQVELIVSRRI 192 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~ 192 (315)
++......|.|.|.|..
T Consensus 70 ~~~~~g~~v~l~v~R~g 86 (88)
T 3bpu_A 70 VESPKGSEVTLLVQRQT 86 (88)
T ss_dssp HTSCTTCEEEEEEEEEC
T ss_pred HhCCCCCEEEEEEEeCC
Confidence 86433235999998864
No 124
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=99.28 E-value=8.6e-12 Score=109.75 Aligned_cols=86 Identities=27% Similarity=0.395 Sum_probs=74.4
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
.+..+.|.|.. ..||||.+.||.+. ..+++|..|.+||+|+++| |++||+|++|||+++.++++++++.+
T Consensus 84 ~~~~v~l~k~~------~~~lG~~i~~~~~~---~~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~ 153 (192)
T 3k1r_A 84 KLKEVRLDRLH------PEGLGLSVRGGLEF---GCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINL 153 (192)
T ss_dssp SCEEEEEETTS------TTCCCEEEEEEGGG---TEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHH
T ss_pred ceEEEEEEeCC------CCceeEEEEccccc---CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHH
Confidence 35567888864 46999999999753 3589999999999999998 99999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEEeCCC
Q psy4487 175 IAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~~~ 193 (315)
|+. +.. |.|+|.|...
T Consensus 154 l~~-~~~--v~l~v~r~g~ 169 (192)
T 3k1r_A 154 IRT-EKT--VSIKVRHIGL 169 (192)
T ss_dssp HTS-SSE--EEEEEEECCE
T ss_pred HcC-CCe--EEEEEEECCc
Confidence 988 444 9999998754
No 125
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=99.28 E-value=1.6e-11 Score=96.17 Aligned_cols=81 Identities=33% Similarity=0.467 Sum_probs=67.7
Q ss_pred EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487 98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE 177 (315)
Q Consensus 98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~ 177 (315)
.+.|.+.. .||||.+.++.+ ..|++|..|.++|||+++| |++||+|++|||+.+.+++++++.++|+.
T Consensus 12 ~~~l~~~~-------~g~G~~~~~~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~ 79 (98)
T 2jxo_A 12 LCTMKKGP-------SGYGFNLHSDKS----KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRA 79 (98)
T ss_dssp EEEEECTT-------TCCCEEEECCCS----SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred EEEEEeCC-------CcccEEEEecCC----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence 34566653 689999998764 2489999999999999988 99999999999999999999999999998
Q ss_pred cCCCCcEEEEEEeC
Q psy4487 178 SRQEPQVELIVSRR 191 (315)
Q Consensus 178 s~~~~~V~LvV~R~ 191 (315)
..+. .+.|+|.|.
T Consensus 80 ~~~~-~~~l~v~R~ 92 (98)
T 2jxo_A 80 GGDE-TKLLVVDRE 92 (98)
T ss_dssp TTTE-EEEEECCHH
T ss_pred CCCc-EEEEEEECC
Confidence 8543 356777664
No 126
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=99.27 E-value=2.2e-11 Score=95.60 Aligned_cols=79 Identities=25% Similarity=0.340 Sum_probs=66.4
Q ss_pred CCccceEEEcCcCCCC----CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEE
Q psy4487 112 SSTLGIKVIGGKLLED----GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~----g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~Lv 187 (315)
..+|||++.++..... -..|++|..|.++|||+++| |+.||+|++|||+.+.++++++++.+|+..+.. |.|.
T Consensus 12 ~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~--v~l~ 88 (99)
T 3khf_A 12 GKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSGNK--ISLR 88 (99)
T ss_dssp CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHHSCSE--EEEE
T ss_pred CCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCE--EEEE
Confidence 4799999987654211 11367899999999999988 999999999999999999999999999977655 9999
Q ss_pred EEeCCC
Q psy4487 188 VSRRIQ 193 (315)
Q Consensus 188 V~R~~~ 193 (315)
|.|...
T Consensus 89 v~r~~~ 94 (99)
T 3khf_A 89 TTALEN 94 (99)
T ss_dssp EECSCS
T ss_pred EEECCC
Confidence 998654
No 127
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.27 E-value=2e-11 Score=102.79 Aligned_cols=97 Identities=23% Similarity=0.430 Sum_probs=76.2
Q ss_pred ceeEEEEEEeccCCCCCCCCCccceEEEcCcCCC---------CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeC
Q psy4487 93 KYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLE---------DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSM 163 (315)
Q Consensus 93 ~~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~---------~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l 163 (315)
+..+..+.|.+... .+..+|||++.||.+.. ....|++|..|.++|||+++| |++||+|++|||+.+
T Consensus 21 ~~~~~~v~l~~~~~---~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v 96 (139)
T 2vz5_A 21 QSMVQRVEIHKLRQ---GENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDM 96 (139)
T ss_dssp -CEEEEEEEECEEE---TTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEEC
T ss_pred CCceEEEEEEEcCC---CCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEEc
Confidence 33556677776531 12348999999987632 235799999999999999988 999999999999999
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487 164 RGKSFQDVEDIIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 164 ~g~t~~eav~iLk~s~~~~~V~LvV~R~~~~ 194 (315)
.++++++++.+|+...+ ..|.|.|.|....
T Consensus 97 ~~~~~~~~~~~l~~~~g-~~v~l~v~R~g~~ 126 (139)
T 2vz5_A 97 TMVTHDQARKRLTKRSE-EVVRLLVTRQSLQ 126 (139)
T ss_dssp TTCCHHHHHHHHCCTTC-SEEEEEEEECC--
T ss_pred CCCCHHHHHHHHHhCCC-CEEEEEEEECCEE
Confidence 99999999999987443 3499999997644
No 128
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.6e-11 Score=97.53 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=71.3
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
..+.|.|. ..+|||.+.++.. ..|++|..|.++|+|+++| |++||+|++|||+++.++++.+++.+++
T Consensus 10 r~v~l~k~-------~~~~G~~l~~~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~ 77 (106)
T 2eei_A 10 RLCYLVKE-------GGSYGFSLKTVQG----KKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVK 77 (106)
T ss_dssp EEEEEECC-------SSSCSCCEECCSS----CCSCEECCCCTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHH
T ss_pred EEEEEEEC-------CCCCCEEEEeccC----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 34567774 3799999998653 3689999999999999988 9999999999999999999999999998
Q ss_pred hcCCCCcEEEEEEeCCCC
Q psy4487 177 ESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 177 ~s~~~~~V~LvV~R~~~~ 194 (315)
..... +.|+|.|....
T Consensus 78 ~~~~~--v~l~v~r~~~~ 93 (106)
T 2eei_A 78 KSGSR--VMFLLVDKETD 93 (106)
T ss_dssp HHCSE--EEEEECCTTTS
T ss_pred hCCCe--EEEEEEcCchh
Confidence 87654 99999887644
No 129
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=2.6e-11 Score=95.30 Aligned_cols=84 Identities=20% Similarity=0.332 Sum_probs=70.2
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
....+.|.|... ..+|||.+.| ..+++|..|.++|+|+ +.|++||+|++|||+++.++++.+++.+
T Consensus 8 ~~~~v~l~~~~~-----~~~~G~~l~~-------~~~~~V~~V~~~spA~--agL~~GD~Il~ing~~v~~~~~~~~~~~ 73 (96)
T 2edv_A 8 VRHTVKIDKDTL-----LQDYGFHISE-------SLPLTVVAVTAGGSAH--GKLFPGDQILQMNNEPAEDLSWERAVDI 73 (96)
T ss_dssp EEEEEEECCCSS-----SCSCSBCCCS-------SSSCBCCCBCSSSSST--TTSCTTCBEEEESSCBSTTCCHHHHHHH
T ss_pred ccEEEEEEECCC-----CCcccEEEec-------CCCeEEEEECCCCchh--hCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 345567877642 2489999987 2489999999999996 5599999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEEeCCCC
Q psy4487 175 IAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~~~~ 194 (315)
++..+.. |.|+|.|+...
T Consensus 74 ~~~~g~~--v~l~v~R~~~~ 91 (96)
T 2edv_A 74 LREAEDS--LSITVVRCTSS 91 (96)
T ss_dssp HHHCSSC--EEEEEEECCCC
T ss_pred HHcCCCe--EEEEEEECCCC
Confidence 9986655 99999998743
No 130
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=99.24 E-value=6.5e-11 Score=92.24 Aligned_cols=79 Identities=25% Similarity=0.397 Sum_probs=66.8
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
..++|.|.. .+|||.+.+. .+++|..|.+++||+++| |++||+|++|||+.+.++++.+++..++
T Consensus 10 r~v~l~~~~-------~~~G~~l~~~-------~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~ 74 (93)
T 2dls_A 10 RCVIIQKDQ-------HGFGFTVSGD-------RIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIK 74 (93)
T ss_dssp EEEEEECSS-------SSCCEEEECS-------SSCEEEEECSSSTTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHT
T ss_pred EEEEEEeCC-------CceeEEEeCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhc
Confidence 345677754 6899999863 479999999999999988 9999999999999999999999988887
Q ss_pred hcCCCCcEEEEEEeCCC
Q psy4487 177 ESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 177 ~s~~~~~V~LvV~R~~~ 193 (315)
. . ..|.|.|.|+..
T Consensus 75 ~-g--~~v~l~v~R~~~ 88 (93)
T 2dls_A 75 S-G--AYVALTLLGSSS 88 (93)
T ss_dssp S-S--SEEEEEEECCCC
T ss_pred C-C--CEEEEEEEECCC
Confidence 3 4 349999998764
No 131
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.23 E-value=4e-11 Score=125.03 Aligned_cols=91 Identities=23% Similarity=0.315 Sum_probs=78.5
Q ss_pred eeEEEEEEeccCCCCCCCCCccceEEEcCcCCC--CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHH
Q psy4487 94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLE--DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171 (315)
Q Consensus 94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~--~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~ea 171 (315)
.....+.|.|.. .||||+|.||.+.. .+..|++|..|.+||+|+++|+|+.||+|++|||+++.+++|.++
T Consensus 58 ~~~~~v~l~k~~-------~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~ 130 (721)
T 2xkx_A 58 MEYEEITLERGN-------SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAA 130 (721)
T ss_pred ceEEEEEEEeCC-------CCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHH
Confidence 445567787764 59999999998752 346799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEEeCCC
Q psy4487 172 EDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 172 v~iLk~s~~~~~V~LvV~R~~~ 193 (315)
+.+|+.++.. |.|+|.|...
T Consensus 131 ~~~l~~~g~~--v~l~v~R~~~ 150 (721)
T 2xkx_A 131 VEALKEAGSI--VRLYVMRRKP 150 (721)
T ss_pred HHHhhccccc--cceEEEeccc
Confidence 9999987755 9999988753
No 132
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.23 E-value=4.7e-11 Score=103.02 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=69.4
Q ss_pred CccceEEEcCcCCC--CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEe
Q psy4487 113 STLGIKVIGGKLLE--DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190 (315)
Q Consensus 113 ~gLGfsIvGGk~~~--~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R 190 (315)
.+|||.+.++.... ....|++|..|.++|+|+++|+|++||+|++|||+++.+++|++++.+|++.+.. |.|+|.|
T Consensus 111 ~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~--v~l~v~R 188 (196)
T 3gsl_A 111 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDV--VYLKVAK 188 (196)
T ss_dssp TBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCCEE--EEEEEEE
T ss_pred CCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCCCe--EEEEEeC
Confidence 58999999987542 2346899999999999999999999999999999999999999999999987654 9999998
Q ss_pred CCC
Q psy4487 191 RIQ 193 (315)
Q Consensus 191 ~~~ 193 (315)
+..
T Consensus 189 ~~~ 191 (196)
T 3gsl_A 189 PSN 191 (196)
T ss_dssp ESC
T ss_pred CCC
Confidence 764
No 133
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.23 E-value=9.9e-12 Score=98.65 Aligned_cols=80 Identities=23% Similarity=0.390 Sum_probs=69.3
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.+|||++.+|.+. ..+++|..|.++++|+++| |++||+|++|||+.+.+++++++.++|+.... .|.|.|.|..
T Consensus 15 ~~lG~~l~~g~~~---~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~--~v~l~v~R~g 88 (103)
T 1v5l_A 15 APWGFRLSGGIDF---NQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASY--QLCLKIDRAE 88 (103)
T ss_dssp SCCSBCCEEETTT---TEEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCS--EEECEECCCT
T ss_pred CCcCEEEeccccC---CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCC--eEEEEEEECC
Confidence 5899999998764 2589999999999999887 99999999999999999999999999988743 4999999887
Q ss_pred CCCCCC
Q psy4487 193 QPKYAP 198 (315)
Q Consensus 193 ~~~p~p 198 (315)
...+.+
T Consensus 89 ~~~~~~ 94 (103)
T 1v5l_A 89 TRLWSP 94 (103)
T ss_dssp TTTSCS
T ss_pred eEccCC
Confidence 655443
No 134
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=99.22 E-value=1.3e-10 Score=93.08 Aligned_cols=87 Identities=20% Similarity=0.242 Sum_probs=72.1
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
.++.|.+.. ..||||.+.++.+ ..+++|..|.++|+|+++|.|+.||+|++|||+.+.+++++++..+|+
T Consensus 3 ~~v~l~~~~------~~glG~~~~~~~~----~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~ 72 (112)
T 1qau_A 3 ISVRLFKRK------VGGLGFLVKERVS----KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLR 72 (112)
T ss_dssp EEEEEECBT------TTBTSEEEEECSS----SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred EEEEEEcCC------CCceeEEEEecCC----CCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 456676653 3689999998653 358999999999999999844999999999999999999999999998
Q ss_pred hcCCCCcEEEEEEeCCCC
Q psy4487 177 ESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 177 ~s~~~~~V~LvV~R~~~~ 194 (315)
...+ ..|.|.|.|....
T Consensus 73 ~~~g-~~v~l~v~R~g~~ 89 (112)
T 1qau_A 73 GIAS-ETHVVLILRGPEG 89 (112)
T ss_dssp HSCS-SSEEEEEEECCTT
T ss_pred hCCC-CcEEEEEEeCCcc
Confidence 8654 3499999997643
No 135
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=99.22 E-value=5.5e-11 Score=94.66 Aligned_cols=86 Identities=26% Similarity=0.392 Sum_probs=66.9
Q ss_pred eeEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487 94 YMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED 173 (315)
Q Consensus 94 ~~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~ 173 (315)
+....+.+.|.. ....+|||+|.++.. .+..+++|..|.++|+|+++| |+.||+|++|||+.+.+++++++.+
T Consensus 5 ~~~~~v~i~k~~----~~~~~~Gf~v~~~~~--~~~~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~l~~ 77 (94)
T 3kzd_A 5 KVTHSIHIEKSD----TAADTYGFSLSSVEE--DGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKD 77 (94)
T ss_dssp CEEEEEEEEC----------CCSEEEEEECS--SSSCEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHH
T ss_pred cceeEEEEEeCC----CCcCCcCEEEEecCC--CCcCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHH
Confidence 345566777764 234689999988543 234689999999999999987 9999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEEEe
Q psy4487 174 IIAESRQEPQVELIVSR 190 (315)
Q Consensus 174 iLk~s~~~~~V~LvV~R 190 (315)
++++. .+.|+|+.
T Consensus 78 ~l~~~----~l~ltV~~ 90 (94)
T 3kzd_A 78 FLSQP----SLGLLVRT 90 (94)
T ss_dssp HHHSS----EEEEEEEE
T ss_pred HHhCC----eEEEEEEe
Confidence 99853 37787765
No 136
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=99.22 E-value=6.9e-11 Score=95.98 Aligned_cols=82 Identities=12% Similarity=0.212 Sum_probs=68.7
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
..+.|+|.. .+|||.+.|+ .+++|..|.++++|+++| |+.||+|++|||+++.++++++++++|+
T Consensus 25 r~v~l~k~~-------~~~G~~l~~~-------~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~~~~dv~~~i~ 89 (109)
T 2vsv_A 25 RSIRFTAEE-------GDLGFTLRGN-------APVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLK 89 (109)
T ss_dssp EEEEECCGG-------GCCCEEEESS-------SSCEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred EEEEEEeCC-------CceeEEEeCC-------CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 456787753 7899999764 368999999999999887 9999999999999999999999999998
Q ss_pred hcCCCCcEEEEEEeCCCC
Q psy4487 177 ESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 177 ~s~~~~~V~LvV~R~~~~ 194 (315)
..++. .|.|.|.|....
T Consensus 90 ~~~~~-~v~l~V~~~~~~ 106 (109)
T 2vsv_A 90 SFGED-EIEMKVVSLLDE 106 (109)
T ss_dssp TTTTS-CEEEEEESCC--
T ss_pred hCCCC-eEEEEEEECCCc
Confidence 87653 399999887643
No 137
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=98.86 E-value=1e-12 Score=106.90 Aligned_cols=83 Identities=31% Similarity=0.524 Sum_probs=69.1
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
+..++|.|.. ..+|||.+.||.+.. .|++|..|.++|+|++++.|++||+|++|||+++.+.++++++.+|
T Consensus 28 ~~~v~l~k~~------~~glG~~l~~g~~~~---~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l 98 (112)
T 2lob_A 28 IRKVLLLKED------HEGLGISITGGKEHG---VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTIL 98 (112)
Confidence 3455666654 479999999987642 5899999999999998455999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEE
Q psy4487 176 AESRQEPQVELIVS 189 (315)
Q Consensus 176 k~s~~~~~V~LvV~ 189 (315)
+..+.. |.|.|.
T Consensus 99 ~~~~~~--v~l~V~ 110 (112)
T 2lob_A 99 SQQRGE--IEFEVV 110 (112)
Confidence 887755 777664
No 138
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.22 E-value=7.1e-11 Score=103.55 Aligned_cols=86 Identities=21% Similarity=0.271 Sum_probs=72.9
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
..+.|.+.. ..+|||.|.||.+. ..+++|..|.++|+|++++.|+.||+|++|||+.+.+++|.+++.+++
T Consensus 9 ~~v~l~~~~------~~~lG~~i~~~~~~---~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~ 79 (200)
T 2qt5_A 9 TVVELMKKE------GTTLGLTVSGGIDK---DGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLK 79 (200)
T ss_dssp EEEEEECCT------TCCCCEEEECCTTS---SSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred EEEEEEeCC------CCCCCEEEecccCC---CCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 345666543 47999999999764 357999999999999998569999999999999999999999999998
Q ss_pred hcCCCCcEEEEEEeCCC
Q psy4487 177 ESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 177 ~s~~~~~V~LvV~R~~~ 193 (315)
..+.. |.|.|.|+..
T Consensus 80 ~~g~~--v~l~v~R~~~ 94 (200)
T 2qt5_A 80 NVGER--VVLEVEYELP 94 (200)
T ss_dssp TCCSE--EEEEEEEECC
T ss_pred hCCCe--EEEEEeccCC
Confidence 87654 9999988653
No 139
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=99.21 E-value=4.6e-11 Score=94.78 Aligned_cols=82 Identities=26% Similarity=0.362 Sum_probs=67.1
Q ss_pred EEEEeccCCCCCCCCCccceEEEcCcCC----CCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHH
Q psy4487 98 HMILRKSGDRYPSASSTLGIKVIGGKLL----EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED 173 (315)
Q Consensus 98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~----~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~ 173 (315)
.++|.|.. ..+|||.|.+.... .....+++|..|.++++|+++| |++||+|++|||+.+.+++++++++
T Consensus 18 ~v~l~~~~------~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~ 90 (104)
T 2z17_A 18 LVTVEKQD------NETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVD 90 (104)
T ss_dssp EEEEECCT------TSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCHHHHHH
T ss_pred EEEEEeCC------CCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHH
Confidence 34577754 35899999984321 1234699999999999999988 9999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEE
Q psy4487 174 IIAESRQEPQVELIV 188 (315)
Q Consensus 174 iLk~s~~~~~V~LvV 188 (315)
+|+...+. |.|.|
T Consensus 91 ~l~~~~~~--v~l~v 103 (104)
T 2z17_A 91 LIRSSGNL--LTIET 103 (104)
T ss_dssp HHHHTTTE--EEEEC
T ss_pred HHHhCCCc--EEEEE
Confidence 99998653 77765
No 140
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.20 E-value=4e-11 Score=94.79 Aligned_cols=80 Identities=23% Similarity=0.362 Sum_probs=68.3
Q ss_pred EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487 98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE 177 (315)
Q Consensus 98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~ 177 (315)
.+.|.+.. .+|||.+.++ .+++|..|.++++|+++| |++||+|++|||+.+.++++.+++.+|+.
T Consensus 18 ~v~l~~~~-------~g~G~~~~~~-------~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~ 82 (100)
T 1whd_A 18 QITIRRGK-------DGFGFTICCD-------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRS 82 (100)
T ss_dssp EEEEECCS-------SSSSCBCCCS-------SSCBCCBCCTTSHHHHHT-CCSSCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred EEEEECCC-------CeeeEEEeCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 35566543 6899998764 378999999999999988 99999999999999999999999999998
Q ss_pred cCCCCcEEEEEEeCCCC
Q psy4487 178 SRQEPQVELIVSRRIQP 194 (315)
Q Consensus 178 s~~~~~V~LvV~R~~~~ 194 (315)
.... |.|.|.|...+
T Consensus 83 ~~~~--v~l~v~R~~~~ 97 (100)
T 1whd_A 83 CPSE--IILLVWRVSGP 97 (100)
T ss_dssp CSSE--EEEEEEECCSS
T ss_pred CCCe--EEEEEEECCCC
Confidence 7654 99999997654
No 141
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.20 E-value=8.9e-11 Score=91.79 Aligned_cols=66 Identities=26% Similarity=0.442 Sum_probs=59.1
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEe
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R 190 (315)
..+|||.+.+| +|..|.++|+|+++| |++||+|++|||+++.+.++++++++|+..+.. |.|.|.+
T Consensus 23 ~~~lG~~~~~G----------~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~--v~l~v~p 88 (90)
T 1y7n_A 23 RYQLGFSVQNG----------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGE--IHMKTMP 88 (90)
T ss_dssp TSCCCEEEETT----------EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCCEE--EEEEEEC
T ss_pred ccccCeEecCC----------EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe--EEEEEEE
Confidence 47899999764 799999999999988 999999999999999999999999999987544 8888865
No 142
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=99.19 E-value=8.7e-11 Score=96.96 Aligned_cols=74 Identities=22% Similarity=0.397 Sum_probs=65.0
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.+|||.+.+|.+ .|++|..|.++|||+++| |++||+|++|||+.+.+.++++++.+|+.......|.|+|.|..
T Consensus 39 ~~lG~~l~~~~~-----~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 112 (124)
T 3tsv_A 39 DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 112 (124)
T ss_dssp SCCCEEEEECTT-----SCEEEEEECTTCHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECH
T ss_pred CceeEEEecCCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 689999998764 589999999999999988 99999999999999999999999999986433345999998864
No 143
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.19 E-value=2.3e-10 Score=90.06 Aligned_cols=84 Identities=19% Similarity=0.336 Sum_probs=66.9
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
...+.|.+.. .||||.|.++. .|++|..|.++ |+. +.|++||+|++|||+++.+++|++++++|
T Consensus 11 ~~~v~l~~~~-------~g~G~~i~~~~------~Gv~V~~v~~~--a~~-aGL~~GD~I~~vng~~v~~~~~~~~~~~l 74 (96)
T 1ujv_A 11 LMTLTIVKGA-------QGFGFTIADSP------TGQRVKQILDI--QGC-PGLCEGDLIVEINQQNVQNLSHTEVVDIL 74 (96)
T ss_dssp CEEEEEECCS-------SSSSEEEEEET------TEEEEEEESCG--GGS-TTCCSSCEEEEETTEECSSCCHHHHHHHH
T ss_pred EEEEEEEeCC-------CceeEEEEcCC------CCEEEEEEecc--ccc-CCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4455677654 69999997532 37999999994 554 45999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCCCCC
Q psy4487 176 AESRQEPQVELIVSRRIQPK 195 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~~~~ 195 (315)
+.......|.|+|.|.....
T Consensus 75 ~~~~~g~~v~l~v~R~g~~~ 94 (96)
T 1ujv_A 75 KDCPIGSETSLIIHRGSGPS 94 (96)
T ss_dssp HHSCTTSEEEEEEECCSSCS
T ss_pred HcCCCCCEEEEEEEECCCCC
Confidence 99752235999999976543
No 144
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=99.18 E-value=9.2e-11 Score=94.65 Aligned_cols=74 Identities=30% Similarity=0.433 Sum_probs=64.9
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~ 191 (315)
..+|||.+.++.. ..|++|..|.++|||+++| |++||+|++|||+.+.+.++++++.+|+..+. .|.|.|.|.
T Consensus 24 ~~~~G~~l~~~~~----~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~--~v~l~v~R~ 96 (114)
T 2edz_A 24 GQNYGFFLRIEKD----TDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGN--SVTLLVLDG 96 (114)
T ss_dssp TCCCSCEEECCTT----CCSCEEECCCTTCTTGGGT-CCTTCEEEEESSSBCSSSCHHHHHHHHHHTCS--EEEEEEECH
T ss_pred CCcccEEEEEecC----CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCC--EEEEEEEEC
Confidence 4679999987653 3589999999999999988 99999999999999999999999999988754 499999886
Q ss_pred C
Q psy4487 192 I 192 (315)
Q Consensus 192 ~ 192 (315)
.
T Consensus 97 ~ 97 (114)
T 2edz_A 97 D 97 (114)
T ss_dssp H
T ss_pred C
Confidence 5
No 145
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=1.8e-11 Score=100.78 Aligned_cols=87 Identities=26% Similarity=0.411 Sum_probs=70.6
Q ss_pred EEEEeccCCCCCCCCCccceEEEcCcCC-------------------------CCCCCCeEEEeecCCChhcccCCCCCC
Q psy4487 98 HMILRKSGDRYPSASSTLGIKVIGGKLL-------------------------EDGTRGAIIEKVKKGSPADLEGHLLAG 152 (315)
Q Consensus 98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~-------------------------~~g~~gi~Is~V~pGgpA~~~G~L~~G 152 (315)
.++|.|.. .||||+|.+.... .....+++|..|.++++|+++| |++|
T Consensus 11 ~v~l~r~~-------~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~G 82 (126)
T 2yuy_A 11 TVTLKRTS-------QGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTG 82 (126)
T ss_dssp CEEEECCS-------SSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHT-CCSS
T ss_pred EEEEEECC-------CCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcC-CCCC
Confidence 46777764 6899999863211 0123579999999999999988 9999
Q ss_pred CEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487 153 DQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 153 D~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~~ 194 (315)
|+|++|||+++.++++++++++|+..+.. |.|.|.|....
T Consensus 83 D~I~~ing~~v~~~~~~~~~~~l~~~g~~--v~l~v~r~~~~ 122 (126)
T 2yuy_A 83 DRIIKVNGESVIGKTYSQVIALIQNSDTT--LELSVMPKDSG 122 (126)
T ss_dssp CCCCEETTEECSSCCHHHHHHHHHTCTTE--EEEECCCCCCC
T ss_pred CEEEEECCEECCCCCHHHHHHHHHcCCCE--EEEEEEECCCC
Confidence 99999999999999999999999987544 99999887543
No 146
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.17 E-value=6.3e-11 Score=93.38 Aligned_cols=86 Identities=27% Similarity=0.363 Sum_probs=69.2
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
.+..++|.+.. ...+|||.|.++.+. ..|++|..|.++++|+++| |++||+|++|||+.+.++++.+++..
T Consensus 8 ~~~~v~l~~~~-----~~~~lG~~~~~~~~~---~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~ 78 (101)
T 1uez_A 8 EVRLVSLRRAK-----AHEGLGFSIRGGSEH---GVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKA 78 (101)
T ss_dssp CCEEECCCCCC-----TTTCSSEEEEECTTT---TCCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHH
T ss_pred ccEEEEEEECC-----CCCcccEEEeCCCCC---CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHh
Confidence 34556666643 247999999998653 3589999999999999988 99999999999999999999887777
Q ss_pred HHhcCCCCcEEEEEEeCC
Q psy4487 175 IAESRQEPQVELIVSRRI 192 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~~ 192 (315)
++.. . .|.|.|.|..
T Consensus 79 ~~~~-~--~v~l~v~R~g 93 (101)
T 1uez_A 79 LKGS-K--KLVLSVYSAG 93 (101)
T ss_dssp SSSS-S--SCCEEECCCC
T ss_pred hcCC-C--eEEEEEEECC
Confidence 6543 2 3888887764
No 147
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=99.16 E-value=1.7e-10 Score=92.78 Aligned_cols=73 Identities=26% Similarity=0.429 Sum_probs=64.5
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~ 191 (315)
..+|||.+.++.+. ..|++|..|.++++|+++| |++||+|++|||+.+.++++.+++.+++.. .. |.|.|.|.
T Consensus 26 ~~~lG~~l~~~~~~---~~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~--v~l~v~r~ 98 (114)
T 1x5n_A 26 SRGLGCSISSGPIQ---KPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-RS--LTISIVAA 98 (114)
T ss_dssp SCCCCEEEEECCSS---SCSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHC-SS--EEEEECSS
T ss_pred CCceeEEEeecCCC---CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-Ce--EEEEEEcC
Confidence 46899999998653 3589999999999999888 999999999999999999999999999875 34 99999876
No 148
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=99.16 E-value=1.6e-10 Score=94.71 Aligned_cols=83 Identities=31% Similarity=0.433 Sum_probs=69.6
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
..+.|.+.. .||||.+.++.. ..|++|..|.++|+|+++| |+.||+|++|||+.+.+++++++..+|+
T Consensus 11 r~v~l~~~~-------~g~G~~l~~~~~----~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~ 78 (128)
T 2kjd_A 11 RLCTMKKGP-------SGYGFNLHSDKS----KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIR 78 (128)
T ss_dssp EEEEEECCS-------SSCCEEEEECSS----SCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred EEEEEecCC-------CcccEEEEecCC----CCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence 345666654 689999998764 2489999999999999988 9999999999999999999999999999
Q ss_pred hcCCCCcEEEEEEeCC
Q psy4487 177 ESRQEPQVELIVSRRI 192 (315)
Q Consensus 177 ~s~~~~~V~LvV~R~~ 192 (315)
...+ ..+.|+|.|..
T Consensus 79 ~~~~-~~~~l~v~R~g 93 (128)
T 2kjd_A 79 AGGD-ETKLLVVDRET 93 (128)
T ss_dssp TTCS-EEEEEEECHHH
T ss_pred hCCC-CEEEEEEEeCC
Confidence 8744 34778887754
No 149
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=9.2e-11 Score=95.90 Aligned_cols=89 Identities=24% Similarity=0.337 Sum_probs=72.0
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
.+..+.|.|.. ....+|||.|.++... +..+++|..|.++++|+++| |++||+|++|||+++.+++|+++.++
T Consensus 15 ~~~~v~l~k~~----~~~~~~G~~v~~~~~~--~~~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~ 87 (114)
T 2d8i_A 15 VTQSIHIEKSD----TAADTYGFSLSSVEED--GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDF 87 (114)
T ss_dssp EEEEEEEECSC----TTTCCCCCEEEEEEET--TEEEEEEEECCTTSSHHHHT-CCTTCCEEEESSCBGGGCCHHHHHHH
T ss_pred ceEEEEEEeCC----CCccccCEEEEecCcC--CcCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHH
Confidence 45677788764 1123799999985432 22589999999999999988 99999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEEeCCCC
Q psy4487 175 IAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~~~~ 194 (315)
|+.. .+.|+|.|....
T Consensus 88 l~~~----~v~l~v~R~p~~ 103 (114)
T 2d8i_A 88 LSQP----SLGLLVRTYPEL 103 (114)
T ss_dssp HTSS----EEEEEEEECCCS
T ss_pred HhCC----cEEEEEEECCCC
Confidence 9753 399999887644
No 150
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.15 E-value=1.5e-10 Score=94.92 Aligned_cols=88 Identities=19% Similarity=0.251 Sum_probs=72.6
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
+.++.|.+.. ..||||.+.++.+ ..+++|..|.++|+|+++|.|+.||+|++|||+.+.+++++++.++|
T Consensus 9 ~~~v~l~~~~------~~glG~~~~~~~~----~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l 78 (127)
T 1b8q_A 9 VISVRLFKRK------VGGLGFLVKERVS----KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVL 78 (127)
T ss_dssp SEEEEEECTT------TSCCSCCEEECTT----SSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHH
T ss_pred eEEEEEEeCC------CCcEeEEEEecCC----CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4556776653 3699999998653 36899999999999999984499999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCCCC
Q psy4487 176 AESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~~~ 194 (315)
+...+ ..|.|.|.|....
T Consensus 79 ~~~~g-~~v~l~v~R~g~~ 96 (127)
T 1b8q_A 79 RGIAS-ETHVVLILRGPEG 96 (127)
T ss_dssp HSCCS-SCEEEEEECCCCS
T ss_pred HhCCC-CeEEEEEEeCCce
Confidence 98644 3499999987643
No 151
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.14 E-value=2.2e-10 Score=100.43 Aligned_cols=75 Identities=21% Similarity=0.414 Sum_probs=66.7
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~ 191 (315)
..+|||.+.++. .|++|..|.++|+|+++|+|++||+|++|||+++.++++++++.+++..... |.|+|.|.
T Consensus 124 ~~~lG~~~~~~~------~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~--v~L~V~R~ 195 (206)
T 3r0h_A 124 GKELGLSLSPNE------IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGK--VSMEVTRP 195 (206)
T ss_dssp TCCCCEEEEECS------SCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE--EEEEEEEE
T ss_pred CCccCeEEEcCC------ceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe--EEEEEEeC
Confidence 468999999653 5899999999999999988999999999999999999999999999987655 99999997
Q ss_pred CCC
Q psy4487 192 IQP 194 (315)
Q Consensus 192 ~~~ 194 (315)
...
T Consensus 196 ~~~ 198 (206)
T 3r0h_A 196 KPT 198 (206)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 152
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.12 E-value=1.8e-10 Score=93.23 Aligned_cols=81 Identities=30% Similarity=0.496 Sum_probs=68.2
Q ss_pred EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487 98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE 177 (315)
Q Consensus 98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~ 177 (315)
.+.|.+.. .+|||.+.++.+ .|++|..|.++++|+++| |++||+|++|||+.+.++++.+++..++.
T Consensus 22 ~v~l~~~~-------~~lG~~~~~~~~-----~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~ 88 (117)
T 1uit_A 22 HVKVQKGS-------EPLGISIVSGEK-----GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQ 88 (117)
T ss_dssp EEEEECSS-------CCCCEEEEECTT-----SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTS
T ss_pred EEEEEeCC-------CCccEEEEccCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence 56676653 689999998753 489999999999999988 99999999999999999999998876665
Q ss_pred cCCCCcEEEEEEeCCC
Q psy4487 178 SRQEPQVELIVSRRIQ 193 (315)
Q Consensus 178 s~~~~~V~LvV~R~~~ 193 (315)
.... |.|.|.|...
T Consensus 89 ~g~~--v~l~v~r~~~ 102 (117)
T 1uit_A 89 QCDT--ITILAQYNPH 102 (117)
T ss_dssp CCSE--EEEEECCCSC
T ss_pred CCCe--EEEEEEECCc
Confidence 5544 9999988653
No 153
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=99.11 E-value=3.8e-10 Score=86.82 Aligned_cols=83 Identities=19% Similarity=0.340 Sum_probs=65.1
Q ss_pred EEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHh
Q psy4487 98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAE 177 (315)
Q Consensus 98 ~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~ 177 (315)
.+.+++.. ....+|||.+... ..|++|..|.++|||+++| |++||+|++|||+.+.+.+++++..+|+.
T Consensus 6 ~~~~~~~~----~~~~~lG~~~~~~------~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~ 74 (90)
T 2eaq_A 6 RISINQTP----GKSLDFGFTIKWD------IPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAK 74 (90)
T ss_dssp EEEEECCT----TCSSCCSEEEEEE------TTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECCTTCHHHHHHHHHH
T ss_pred EEEEEecC----CCCCcccEEEEec------CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHHHh
Confidence 34455543 2235799998742 2489999999999999887 99999999999999988899999999986
Q ss_pred cCCCCcEEEEEEeC
Q psy4487 178 SRQEPQVELIVSRR 191 (315)
Q Consensus 178 s~~~~~V~LvV~R~ 191 (315)
......|.|.|.|.
T Consensus 75 ~~~g~~v~l~v~R~ 88 (90)
T 2eaq_A 75 AQETGHLVMDVRRY 88 (90)
T ss_dssp HHHHTEEEEEEEEE
T ss_pred cCCCCEEEEEEEeC
Confidence 32113499999885
No 154
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.11 E-value=2.6e-10 Score=113.95 Aligned_cols=74 Identities=22% Similarity=0.397 Sum_probs=65.9
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.+|||.++||.. .|+||..|.+||||+++| |++||+|++|||+++.++++++++.+|+.......|.|+|.|..
T Consensus 11 ~~lG~~i~gg~~-----~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g 84 (468)
T 3shw_A 11 DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 84 (468)
T ss_dssp SSCCEEEEEETT-----TEEEEEEECSSSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred CccceEEEccCc-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 589999999864 589999999999999988 99999999999999999999999999998433234999999864
No 155
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.08 E-value=7.7e-10 Score=96.89 Aligned_cols=79 Identities=25% Similarity=0.503 Sum_probs=68.0
Q ss_pred CCccceEEEcCcCCCC-CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEe
Q psy4487 112 SSTLGIKVIGGKLLED-GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~-g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R 190 (315)
..+|||.+.+|..... ...+++|..|.++|+|+++|+|++||+|++|||+.+.+++++++.++|+.... .|.|.|.|
T Consensus 116 ~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~--~v~l~v~R 193 (200)
T 2qt5_A 116 GNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQ--EATLLIEY 193 (200)
T ss_dssp TTBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCS--EEEEEEEE
T ss_pred CCCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC--eEEEEEEE
Confidence 3689999998864322 24689999999999999988899999999999999999999999999998443 49999988
Q ss_pred CC
Q psy4487 191 RI 192 (315)
Q Consensus 191 ~~ 192 (315)
..
T Consensus 194 ~~ 195 (200)
T 2qt5_A 194 DV 195 (200)
T ss_dssp EE
T ss_pred CC
Confidence 64
No 156
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=99.08 E-value=5.5e-10 Score=83.54 Aligned_cols=69 Identities=22% Similarity=0.475 Sum_probs=60.7
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~ 191 (315)
...|||.+.+ |++|..|.++|+|+++|.|++||+|++|||+.+.+++++++..+|+.... .+.|.|.|.
T Consensus 12 ~~~~g~~~~~---------gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~--~v~l~v~R~ 80 (81)
T 2rcz_A 12 NEEYGLRLAS---------HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKG--KLKMVVQRD 80 (81)
T ss_dssp TCCCCEEEEE---------EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTT--EEEEEEEC-
T ss_pred CCCCCEEEeC---------CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCC--eEEEEEEeC
Confidence 4678998872 68999999999999888899999999999999999999999999998765 499999874
No 157
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.07 E-value=1.2e-09 Score=89.71 Aligned_cols=75 Identities=31% Similarity=0.424 Sum_probs=65.0
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.+|||.+.++... ..|++|..|.++++|+++| |++||+|++|||+.+.+.++.+++..++.. . .|.|.|.|..
T Consensus 32 ~~lG~~~~~~~~~---~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~--~v~l~v~R~g 104 (128)
T 1uf1_A 32 RSLGLTIRGGAEY---GLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS-R--HLILTVKDVG 104 (128)
T ss_dssp CCCCEEEECCTTT---TCCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTC-S--EEEEEEECCS
T ss_pred CccCEEEECcccC---CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-C--eEEEEEEECC
Confidence 5799999997643 2589999999999999988 999999999999999999999999988774 2 4999999876
Q ss_pred CC
Q psy4487 193 QP 194 (315)
Q Consensus 193 ~~ 194 (315)
..
T Consensus 105 ~~ 106 (128)
T 1uf1_A 105 RL 106 (128)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 158
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=99.06 E-value=1.1e-09 Score=84.29 Aligned_cols=71 Identities=21% Similarity=0.454 Sum_probs=61.0
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~ 191 (315)
...|||.+. .|++|..|.++|+|+++|.|+.||+|++|||+.+.+++++++..+|+.... .+.|.|.|.
T Consensus 14 ~~~~g~~~~---------~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~--~v~l~v~r~ 82 (92)
T 3cyy_A 14 NEEYGLRLA---------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKG--KLKMVVQRD 82 (92)
T ss_dssp TSCCCEEEE---------EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTT--EEEEEEEC-
T ss_pred CCCCCEEEe---------CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC--cEEEEEEeC
Confidence 467898876 378999999999999988799999999999999999999999999998765 499999886
Q ss_pred CC
Q psy4487 192 IQ 193 (315)
Q Consensus 192 ~~ 193 (315)
..
T Consensus 83 g~ 84 (92)
T 3cyy_A 83 ER 84 (92)
T ss_dssp --
T ss_pred Cc
Confidence 53
No 159
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.06 E-value=6e-10 Score=108.79 Aligned_cols=74 Identities=22% Similarity=0.397 Sum_probs=65.1
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.+|||++.||.+ .|++|..|.+||||+++| |++||+|++|||+++.++++++++.+|+.......|.|+|.|..
T Consensus 19 ~~lG~~i~gg~~-----~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~ 92 (391)
T 3tsz_A 19 DSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 92 (391)
T ss_dssp SSCCEEEEEETT-----TEEEEEEECTTCHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred CceeEEEEecCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCC
Confidence 379999999864 599999999999999998 99999999999999999999999999997322234999999874
No 160
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.03 E-value=2.9e-10 Score=92.25 Aligned_cols=73 Identities=19% Similarity=0.302 Sum_probs=63.3
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~ 191 (315)
..+|||.+.|+ .+++|..|.++++|+++| |+.||+|++|||+.+.++++++++++|+...+. .|.|.|.|.
T Consensus 25 ~~~~G~~l~~~-------~~v~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~-~v~l~V~~~ 95 (111)
T 1vae_A 25 EGDLGFTLRGN-------TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGE-EVEMKVVSL 95 (111)
T ss_dssp SSCCSCCEESS-------SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTS-EECEEEECE
T ss_pred CCcccEEEeCC-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc-eEEEEEEec
Confidence 37899999865 368999999999999987 999999999999999999999999999987653 388888776
Q ss_pred CC
Q psy4487 192 IQ 193 (315)
Q Consensus 192 ~~ 193 (315)
..
T Consensus 96 ~~ 97 (111)
T 1vae_A 96 LD 97 (111)
T ss_dssp EC
T ss_pred CC
Confidence 53
No 161
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=99.00 E-value=2e-09 Score=86.84 Aligned_cols=79 Identities=22% Similarity=0.448 Sum_probs=65.5
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
-+.+.|.+. ..|+||.+... ..+++|..|.+||||+++| |++||+|++|||..+...+|+|+..+|
T Consensus 18 ~~~l~l~~~-------~~g~G~~l~~~------~~~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~~v~~~s~~dv~~~i 83 (101)
T 3qik_A 18 AKRLLILPQ-------EEDYGFDIEEK------NKAVVVKSVQRGSLAEVAG-LQVGRKIYSINEDLVFLRPFSEVESIL 83 (101)
T ss_dssp EEEEEECCC-------SSSSSEEEEEE------TTEEEEEEECTTSHHHHHT-CCTTCBEEEETTEESTTSCHHHHHHHH
T ss_pred cCeEEEEeC-------CCcccEEEEcc------CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEEcCcCCHHHHHHHH
Confidence 345566654 37899999752 2478999999999999988 999999999999999889999999999
Q ss_pred Hhc---CCCCcEEEEEEe
Q psy4487 176 AES---RQEPQVELIVSR 190 (315)
Q Consensus 176 k~s---~~~~~V~LvV~R 190 (315)
+.+ +.. |.|+|+.
T Consensus 84 ~~~~~~g~~--v~LLV~~ 99 (101)
T 3qik_A 84 NQSFCSRRP--LRLLVAT 99 (101)
T ss_dssp HHHHHTTCC--EEEEEEC
T ss_pred HHhhccCCe--EEEEEec
Confidence 874 544 9998875
No 162
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.98 E-value=3.2e-10 Score=110.30 Aligned_cols=91 Identities=25% Similarity=0.369 Sum_probs=75.0
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
+..+++.|.. +.+|||.|.|+.. .....+++|..|.+||||+++|+|+.||+|++|||+++.++++++++.+|
T Consensus 205 ~~~V~i~k~~------ge~lG~~i~~~~~-g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l 277 (388)
T 3suz_A 205 CKELQLEKHK------GEILGVVVVESGW-GSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGII 277 (388)
T ss_dssp CEEEEECCCS------SCCCCCCCBCC----CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHT
T ss_pred ceEEEEECCC------CCceeEEEEecCC-CCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHH
Confidence 4577888764 4789999998432 23345799999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCCC
Q psy4487 176 AESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~~ 193 (315)
+..+....|.|.|.|...
T Consensus 278 ~~~~~~~~v~l~v~r~~~ 295 (388)
T 3suz_A 278 KGLKNQTQVKLNIVSCPP 295 (388)
T ss_dssp TTCTTCSCEEEEEEECCS
T ss_pred HhccCCCccccccccccc
Confidence 987554459999988653
No 163
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=98.96 E-value=5.2e-10 Score=101.12 Aligned_cols=83 Identities=31% Similarity=0.438 Sum_probs=69.7
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
...++|.+.. .||||.|.++.. ..|++|..|.+|++|+++| |+.||+|++|||+.+.++++++++.+|
T Consensus 10 ~r~v~l~k~~-------~glG~~l~~~~~----~~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s~~dl~~~l 77 (216)
T 2krg_A 10 PRLCTMKKGP-------SGYGFNLHSDKS----KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAI 77 (216)
T ss_dssp CEEEEEECCS-------SSSCEEECCCSS----SCSCBEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCTHHHHHHH
T ss_pred eEEEEEEeCC-------CCceEEEEecCC----CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 3455677654 689999998763 3489999999999999988 999999999999999999999999999
Q ss_pred HhcCCCCcE-EEEEEeCC
Q psy4487 176 AESRQEPQV-ELIVSRRI 192 (315)
Q Consensus 176 k~s~~~~~V-~LvV~R~~ 192 (315)
+..+. .| .|+|.|..
T Consensus 78 ~~~g~--~v~~l~V~R~g 93 (216)
T 2krg_A 78 RAGGD--ETKLLVVDRET 93 (216)
T ss_dssp HHHCS--EEEEEECCHHH
T ss_pred HhcCC--eEEEEEEEECC
Confidence 88743 38 88887654
No 164
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.95 E-value=2.7e-09 Score=111.22 Aligned_cols=85 Identities=27% Similarity=0.516 Sum_probs=73.6
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
...+.|.+.. .+|||.|.|+.+ ..|++|..|.+||+|+++|.|++||+|++|||+++.++++++++++|
T Consensus 308 ~~~v~l~~~~-------~~lG~~i~~~~~----~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l 376 (721)
T 2xkx_A 308 PRRIVIHRGS-------TGLGFNIVGGED----GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIAL 376 (721)
T ss_pred eEEEEEEECC-------CCccEEEeccCC----CCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHH
Confidence 4456676653 589999998864 25899999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcEEEEEEeCCC
Q psy4487 176 AESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~~~ 193 (315)
+..+.. |.|+|.|...
T Consensus 377 ~~~~~~--v~L~v~r~~~ 392 (721)
T 2xkx_A 377 KNAGQT--VTIIAQYKPE 392 (721)
T ss_pred HhcCCe--EEEEEEeCch
Confidence 988755 9999988754
No 165
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.92 E-value=3.8e-09 Score=86.52 Aligned_cols=91 Identities=19% Similarity=0.301 Sum_probs=70.5
Q ss_pred eEEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHH
Q psy4487 95 MIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174 (315)
Q Consensus 95 ~i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~i 174 (315)
.+..+.+.+.. ...+|||.+.+..... ...|++|..|.++++|+++|+|++||+|++|||+.+. +++++..+
T Consensus 19 ~~~~~~~~~~~-----~~~~lG~~~~~~~~~~-~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~--~~~~~~~~ 90 (124)
T 1wh1_A 19 ELEEVDLYRMN-----SQDKLGLTVCYRTDDE-DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVAL 90 (124)
T ss_dssp EECCBCCCCSS-----TTCCCCEEEECCCCCS-SCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHH
T ss_pred eEEEEEEEecC-----CCCcccEEEEecCCCC-CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECC--CHHHHHHH
Confidence 34445554432 2358999999865432 2368999999999999998879999999999999996 69999999
Q ss_pred HHhcCCCCcEEEEEEeCCCC
Q psy4487 175 IAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 175 Lk~s~~~~~V~LvV~R~~~~ 194 (315)
|+...+ ..|.|.|.|....
T Consensus 91 l~~~~g-~~v~l~v~R~g~~ 109 (124)
T 1wh1_A 91 LTSEEN-KNFSLLIARPELQ 109 (124)
T ss_dssp HTCSSC-CSCCEEEEECSSC
T ss_pred HHhCCC-CEEEEEEEECCEE
Confidence 988543 3499999987644
No 166
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.89 E-value=8.6e-09 Score=84.47 Aligned_cols=63 Identities=25% Similarity=0.496 Sum_probs=56.0
Q ss_pred CCCeEEEeecC--CChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCCC
Q psy4487 129 TRGAIIEKVKK--GSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQP 194 (315)
Q Consensus 129 ~~gi~Is~V~p--GgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~~ 194 (315)
..|++|..|.+ +++|+++| |++||+|++|||+.+.+.+++++..+|+..+. .|.|.|.|....
T Consensus 43 ~~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~~v~~~~~~dl~~~l~~~g~--~v~l~v~R~g~~ 107 (118)
T 2yub_A 43 ATTVQVKEVNRMHISPNNRNA-IHPGDRILEINGTPVRTLRVEEVEDAIKQTSQ--TLQLLIEHDPVP 107 (118)
T ss_dssp CCEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSSBTTTSCHHHHHHHHHCCSS--CEEEEEEECSSC
T ss_pred CCcEEEEEecCCCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHhCCC--EEEEEEEECCEE
Confidence 36899999999 99999887 99999999999999999999999999998733 499999987644
No 167
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.87 E-value=1.1e-08 Score=87.25 Aligned_cols=82 Identities=27% Similarity=0.454 Sum_probs=67.9
Q ss_pred EEEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHH
Q psy4487 96 IGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDII 175 (315)
Q Consensus 96 i~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iL 175 (315)
...+.|.|.. ..+|||.+.+.. .|++|..|.++|||+++| |+.||+|++|||+.+.+.+++.+..++
T Consensus 5 ~r~v~l~k~~------~~~lG~~~~~~~------~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~ 71 (166)
T 1w9e_A 5 PREVILCKDQ------DGKIGLRLKSID------NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVL 71 (166)
T ss_dssp CEEEEEECCT------TSCCSEEEEEET------TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred CEEEEEEeCC------CCcEeEEEEeCC------CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4566777754 368999998732 589999999999999987 999999999999999999887888888
Q ss_pred HhcCCCCcEEEEEEeC
Q psy4487 176 AESRQEPQVELIVSRR 191 (315)
Q Consensus 176 k~s~~~~~V~LvV~R~ 191 (315)
+...+. .|.|.|+|.
T Consensus 72 ~~~~~~-~v~l~vr~~ 86 (166)
T 1w9e_A 72 KQAFGE-KITMTIRDR 86 (166)
T ss_dssp HHCCSS-EEEEEEECC
T ss_pred hcCCCC-EEEEEEEcC
Confidence 876653 499999554
No 168
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.87 E-value=1.1e-08 Score=89.46 Aligned_cols=78 Identities=24% Similarity=0.340 Sum_probs=67.1
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~ 191 (315)
..+|||.+.++.... ...|++|..|.++|+|+++|+|++||+|++|||+.+.+++++++.++|++.... |.|.|.|.
T Consensus 118 ~~~lG~~~~~~~~~~-~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~--v~l~v~R~ 194 (196)
T 1p1d_A 118 SVELGITISSPSSRK-PGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDL--VKLKIRKD 194 (196)
T ss_dssp SCCCCCEEECSCSSS-TTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTC--EEEEEECC
T ss_pred CCCcCEEEECCCCCC-CCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCE--EEEEEEeC
Confidence 467999998865432 246899999999999999888999999999999999999999999999988444 99999886
Q ss_pred C
Q psy4487 192 I 192 (315)
Q Consensus 192 ~ 192 (315)
.
T Consensus 195 ~ 195 (196)
T 1p1d_A 195 E 195 (196)
T ss_dssp C
T ss_pred C
Confidence 4
No 169
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=98.51 E-value=1.5e-07 Score=78.27 Aligned_cols=51 Identities=35% Similarity=0.468 Sum_probs=46.1
Q ss_pred cCcccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCC-CCCCCCCeEEEeecCC
Q psy4487 245 NSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRS-NGQPRCPYAKIYLLPD 314 (315)
Q Consensus 245 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~-~~~~~~pyvk~~llpd 314 (315)
+..+.|+|++++.|++. ...|.|+|++|++|++++ .++.+||||+++|+|+
T Consensus 5 ~~~~~G~l~~sl~y~~~-------------------~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~ 56 (148)
T 3fdw_A 5 NIFVTGRIAFSLKYEQQ-------------------TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPD 56 (148)
T ss_dssp -CCCCCEEEEEEEEETT-------------------TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETC
T ss_pred CCccceEEEEEEEEeCC-------------------CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcC
Confidence 45678999999999998 889999999999999998 5789999999999986
No 170
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=98.51 E-value=1.6e-07 Score=76.78 Aligned_cols=49 Identities=45% Similarity=0.880 Sum_probs=45.5
Q ss_pred cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
...|+|+|+|.|++. ..+|.|+|++|++|++++..+.+||||+++|+|+
T Consensus 5 ~~~G~i~~~l~y~~~-------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~ 53 (141)
T 1v27_A 5 SSGGQLSIKLWFDKV-------------------GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPD 53 (141)
T ss_dssp CCCCEEEEEEEEETT-------------------TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSC
T ss_pred CcccEEEEEEEEeCC-------------------CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecC
Confidence 456999999999988 8899999999999999999999999999999886
No 171
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=98.51 E-value=1.7e-07 Score=75.66 Aligned_cols=48 Identities=42% Similarity=0.860 Sum_probs=45.0
Q ss_pred ccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 248 VGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 248 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
+.|+|++++.|++. ...|.|+|++|++|++++..+.+||||+++++|+
T Consensus 3 ~~G~l~~~l~y~~~-------------------~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~ 50 (129)
T 2bwq_A 3 LSGQLSIKLWFDKV-------------------GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPD 50 (129)
T ss_dssp CCCEEEEEEEEETT-------------------TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESS
T ss_pred eeEEEEEEEEEccC-------------------CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecC
Confidence 46999999999998 8899999999999999999999999999999886
No 172
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=98.51 E-value=1.1e-07 Score=79.34 Aligned_cols=49 Identities=27% Similarity=0.271 Sum_probs=38.8
Q ss_pred cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
...|+|++++.|++. ...|.|+|++|++|++++..+.+||||+++|+++
T Consensus 14 ~~~G~l~~~l~y~~~-------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~ 62 (153)
T 1w15_A 14 SGRGELLVSLCYQST-------------------TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHA 62 (153)
T ss_dssp --CCEEEEEEEEETT-------------------TTEEEEEEEEEESCC------CCCEEEEEEEEET
T ss_pred ccccEEEEEEEEcCC-------------------CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeC
Confidence 456999999999988 8899999999999999998889999999999876
No 173
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=98.48 E-value=1.2e-07 Score=80.63 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=44.5
Q ss_pred cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecC
Q psy4487 247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLP 313 (315)
Q Consensus 247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llp 313 (315)
...|+|+++|.|+.. ...|.|+|++|++|++++.++.+|||||++|+|
T Consensus 27 ~~~G~l~~sl~y~~~-------------------~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~ 74 (155)
T 2z0u_A 27 VGATRIQIALKYDEK-------------------NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLP 74 (155)
T ss_dssp -CCEEEEEEEEEETT-------------------TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEES
T ss_pred CCcEEEEEEEEEcCC-------------------CCEEEEEEEEccCcCCcccCCCCCEEEEEEEec
Confidence 345999999999988 889999999999999999999999999999998
No 174
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=98.47 E-value=1.8e-07 Score=78.41 Aligned_cols=48 Identities=25% Similarity=0.454 Sum_probs=43.2
Q ss_pred cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
...|+|+|+|.|++. ...|.|+|++|++|++++ .+.+|||||++|+|+
T Consensus 11 ~~~G~~~lsL~y~~~-------------------~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~ 58 (153)
T 3fbk_A 11 KVQGAGQLRLSIDAQ-------------------DRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPE 58 (153)
T ss_dssp --CCCCEEEEEEEES-------------------SSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESC
T ss_pred CCCCEEEEEEEEECC-------------------CCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcC
Confidence 445999999999999 889999999999999999 588999999999986
No 175
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=98.45 E-value=7.2e-07 Score=70.27 Aligned_cols=61 Identities=26% Similarity=0.349 Sum_probs=51.6
Q ss_pred CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
..|++|..|.++|||+ .| |++||+|++|||+.+. +++++..+|........|.|.|.|...
T Consensus 6 ~~Gv~V~~V~~~spA~-~G-L~~GD~I~~Ing~~v~--~~~dl~~~l~~~~~g~~v~l~v~R~g~ 66 (100)
T 3i18_A 6 YDGVYVMSVKDDVPAA-DV-LHAGDLITEIDGNAFK--SSQEFIDYIHSKKVGDTVKINYKHGDK 66 (100)
T ss_dssp CCCEEEEEECTTSGGG-GT-CCTTCEEEEETTBCCS--SHHHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred CCCEEEEEeCCCCchH-HC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECCE
Confidence 3589999999999999 45 9999999999999995 788999999875433459999998653
No 176
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.45 E-value=3.8e-07 Score=75.06 Aligned_cols=48 Identities=33% Similarity=0.524 Sum_probs=44.2
Q ss_pred cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
...|+|++++.|++. ...|.|+|++|++|++++..+ +||||+++|+|+
T Consensus 8 ~~~G~l~~~l~y~~~-------------------~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~ 55 (142)
T 2dmg_A 8 SPLGQIQLTIRHSSQ-------------------RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPD 55 (142)
T ss_dssp CSSCEEEEEEEEETT-------------------TTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESC
T ss_pred CCcceEEEEEEEeCC-------------------CCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcC
Confidence 446999999999988 889999999999999999888 999999999985
No 177
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.44 E-value=5.3e-07 Score=70.47 Aligned_cols=59 Identities=20% Similarity=0.337 Sum_probs=50.7
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.|++|..|.++|||+. | |++||+|++|||+.+. +++++..+|+.......|.|.|.|+.
T Consensus 5 ~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g 63 (94)
T 2kl1_A 5 KGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQPIN--TSEQIVSYVREKQAGDRVRVTFIRDR 63 (94)
T ss_dssp CCEECCCCCTTSTTBT-T-BCTTCEEEEETTBCCC--CHHHHHHHHHHSCTTCCEEEEEEETT
T ss_pred CcEEEEEECCCChHHh-C-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEECC
Confidence 5899999999999997 6 9999999999999996 67899999988632234999999865
No 178
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=98.43 E-value=1.3e-07 Score=73.85 Aligned_cols=58 Identities=24% Similarity=0.379 Sum_probs=50.0
Q ss_pred CeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 131 gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
|++|..|.++|||++ | |++||+|++|||+.+. +++++..+|+.......|.|.|.|+.
T Consensus 2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g 59 (91)
T 2kjp_A 2 GIYASSVVENMPAKG-K-IEVGDKIISADGKNYQ--SAEKLIDYISSKKAGDKVTLKIEREE 59 (91)
T ss_dssp CSSCCCCCCSSCCSS-C-CCSSCEEEEETTBCCS--SHHHHHHHHSSCCSSCEECEEEESSS
T ss_pred ceEEEEECCCChHHH-c-CCCCCEEEEECCEECC--CHHHHHHHHHcCCCCCEEEEEEEECC
Confidence 688999999999998 7 9999999999999996 67899999987633345999999865
No 179
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=98.42 E-value=6.4e-07 Score=70.19 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=51.6
Q ss_pred CeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 131 gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
..+|..|.++|+|+++| |+.||+|++|||+.+. +++++...|........|.|.|.|...
T Consensus 3 ~p~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~d~~~~l~~~~~~~~v~l~v~R~g~ 62 (95)
T 3id1_A 3 RPVVGEIAANSIAAEAQ-IAPGTELKAVDGIETP--DWDAVRLQLVDKIGDESTTITVAPFGS 62 (95)
T ss_dssp CCBEEEECTTSHHHHTT-CCTTCEEEEETTEECS--SHHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred CCEEEeeCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHHhcCCCcEEEEEEECCC
Confidence 35799999999999877 9999999999999995 789999999876543459999999864
No 180
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=5.3e-07 Score=74.23 Aligned_cols=49 Identities=35% Similarity=0.442 Sum_probs=45.2
Q ss_pred cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
...|+|++++.|... ...|.|+|++|++|++++..+.+||||+++++|+
T Consensus 10 ~~~G~l~~~l~y~~~-------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~ 58 (141)
T 2d8k_A 10 ENLGRIQFSVGYNFQ-------------------ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPD 58 (141)
T ss_dssp CCCCEEEEEEEECSS-------------------SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESC
T ss_pred ceeeEEEEEEEEeCC-------------------CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECC
Confidence 346999999999988 8899999999999999998899999999999986
No 181
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=98.39 E-value=4.8e-07 Score=74.41 Aligned_cols=50 Identities=26% Similarity=0.421 Sum_probs=44.8
Q ss_pred CcccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 246 SSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 246 ~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
....|+|++++.|++. ...|.|+|++|++|++++..+.+||||+++|.++
T Consensus 12 ~~~~G~l~~~l~y~~~-------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~ 61 (142)
T 2chd_A 12 ATTLGALEFSLLYDQD-------------------NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPG 61 (142)
T ss_dssp --CCCEEEEEEEEEGG-------------------GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESC
T ss_pred CCccceEEEEEEEeCC-------------------CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcC
Confidence 3557999999999988 8899999999999999999999999999999874
No 182
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=98.38 E-value=3.9e-07 Score=74.05 Aligned_cols=47 Identities=19% Similarity=0.405 Sum_probs=44.0
Q ss_pred cceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 249 GGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 249 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
+|+|+++|.|++. ..+|.|+|++|++|++++.++.+||||+++|.++
T Consensus 2 ~G~l~~sl~y~~~-------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~ 48 (138)
T 3n5a_A 2 RGELLLSLCYNPS-------------------ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYK 48 (138)
T ss_dssp CCEEEEEEEEETT-------------------TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEET
T ss_pred CcEEEEEEEEcCC-------------------CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeC
Confidence 4999999999988 8899999999999999999999999999999864
No 183
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=98.37 E-value=1.2e-06 Score=69.98 Aligned_cols=58 Identities=26% Similarity=0.453 Sum_probs=51.1
Q ss_pred CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
..|++|..|.++|+|+++| |++||.|++|||+.+. +++++..+|+. ... +.|.|.|+.
T Consensus 34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~-~~~--v~l~v~R~g 91 (113)
T 2pzd_A 34 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRT-QSQ--LAVQIRRGR 91 (113)
T ss_dssp SSCEEEEEEBTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHHH-CSS--EEEEEEETT
T ss_pred CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHhC-CCe--EEEEEEECC
Confidence 4689999999999999988 9999999999999996 68899999987 333 999998865
No 184
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=98.37 E-value=6e-07 Score=75.04 Aligned_cols=49 Identities=33% Similarity=0.485 Sum_probs=45.2
Q ss_pred cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
...|+|+++|.|+.. ...|.|+|++|++|++++..+.+||||+++|+|+
T Consensus 26 ~~~G~l~~~l~y~~~-------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~ 74 (152)
T 1rsy_A 26 EKLGKLQYSLDYDFQ-------------------NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD 74 (152)
T ss_dssp CCCCEEEEEEEEETT-------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETT
T ss_pred CCceEEEEEEEEeCC-------------------CCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcC
Confidence 345999999999988 8899999999999999998999999999999986
No 185
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=98.36 E-value=8.4e-07 Score=72.81 Aligned_cols=47 Identities=38% Similarity=0.736 Sum_probs=43.0
Q ss_pred cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
...|+|+++|.|+.+ .|.|+|++|++|++++..+.+||||+++|.++
T Consensus 4 ~~~G~i~~~l~y~~~---------------------~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~ 50 (142)
T 1rh8_A 4 PITGEIQLQINYDLG---------------------NLIIHILQARNLVPRDNNGYSDPFVKVYLLPG 50 (142)
T ss_dssp CCCCEEEEEEEEETT---------------------EEEEEEEEEESCCCCSSSSCSCCEEEEEETTS
T ss_pred CcceEEEEEEEEcCC---------------------EEEEEEEEecCCCCCCCCCCCCceEEEEEecC
Confidence 456999999999866 89999999999999999999999999999874
No 186
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=98.36 E-value=5.4e-07 Score=73.87 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=44.6
Q ss_pred cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCC-CCCCCCeEEEeecCC
Q psy4487 247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSN-GQPRCPYAKIYLLPD 314 (315)
Q Consensus 247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~-~~~~~pyvk~~llpd 314 (315)
...|+|++++.|++. ...|.|+|++|++|++++. ++.+||||+++|+|+
T Consensus 6 ~~~G~l~~~l~y~~~-------------------~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~ 55 (138)
T 1ugk_A 6 SGLGTLFFSLEYNFE-------------------RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE 55 (138)
T ss_dssp CCCCEEEEEEEEEGG-------------------GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETT
T ss_pred CccEEEEEEEEEECC-------------------CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecC
Confidence 446999999999988 8899999999999999998 489999999999985
No 187
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.35 E-value=5.1e-08 Score=94.76 Aligned_cols=67 Identities=25% Similarity=0.419 Sum_probs=0.0
Q ss_pred CCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEe
Q psy4487 111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190 (315)
Q Consensus 111 ~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R 190 (315)
...+|||.+.|| +|..|.+||+|+++| |++||+|++|||+++.+.+|++++++|++++.. |.|.|..
T Consensus 306 ~~~~lG~~i~~g----------~I~~V~~gs~A~~aG-L~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~--v~L~V~p 372 (388)
T 3suz_A 306 LKYQLGFSVQNG----------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSVGE--IHMKTMP 372 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCccceEEecC----------EEEEeecCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe--EEEEEEe
Confidence 346799988764 799999999999988 999999999999999999999999999998766 7777643
No 188
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=98.34 E-value=1.8e-06 Score=71.66 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=51.1
Q ss_pred CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
..|++|..|.++|||+ +| |+.||.|++|||+.+. +++++..+|........|+|.|.|+.
T Consensus 56 ~~g~~V~~V~~~spA~-aG-L~~GD~I~~inG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g 115 (134)
T 2l97_A 56 TSGVIVRSVQSNMPAN-GH-LEKYDVITKVDDKEIA--SSTDLQSALYNHSIGDTIKITYYRNG 115 (134)
T ss_dssp CSCEEEEECSTTSGGG-TT-SCSSCEEEEETTEECC--CHHHHHHHHHHSSTTCEEEEEEEETT
T ss_pred CCCEEEEEECCCCchH-HC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECC
Confidence 4689999999999999 77 9999999999999995 67889999987632235999998864
No 189
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.33 E-value=1.3e-06 Score=72.39 Aligned_cols=49 Identities=33% Similarity=0.377 Sum_probs=42.9
Q ss_pred cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCC-CCC------CCCCCeEEEeecCC
Q psy4487 247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPR-SNG------QPRCPYAKIYLLPD 314 (315)
Q Consensus 247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~-~~~------~~~~pyvk~~llpd 314 (315)
...|+|+|+|.|++. ..+|.|+|++|++|+++ +.+ +.+|||||++|+|+
T Consensus 10 ~~~G~l~~~l~y~~~-------------------~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~ 65 (147)
T 2enp_A 10 YQLGMLHFSTQYDLL-------------------HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPD 65 (147)
T ss_dssp CCCCEEEEEEEEETT-------------------TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETC
T ss_pred CcceEEEEEEEEcCC-------------------CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeC
Confidence 456999999999998 88999999999999995 433 57999999999986
No 190
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=98.33 E-value=5.4e-07 Score=74.22 Aligned_cols=49 Identities=33% Similarity=0.485 Sum_probs=45.3
Q ss_pred cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
...|+|++++.|+.. ..+|.|+|++|++|++++..+.+||||+++|+|+
T Consensus 18 ~~~G~l~~~l~y~~~-------------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~ 66 (143)
T 3f04_A 18 EKLGKLQYSLDYDFQ-------------------NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD 66 (143)
T ss_dssp CCCCEEEEEEEEETT-------------------TTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESC
T ss_pred cCeEEEEEEEEEeCC-------------------CCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECC
Confidence 345999999999988 8899999999999999998889999999999986
No 191
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.31 E-value=9.5e-07 Score=67.74 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=50.3
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.|+.|..+.|+++|+++| |++||.|++|||+.+. +++++.+++........+.|.|.|+.
T Consensus 19 ~G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~~v~--~~~d~~~~~~~~~~g~~v~l~v~R~g 78 (87)
T 2i6v_A 19 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDG 78 (87)
T ss_dssp EEEEEEECSCHHHHHHTT-CCTTCEEEEETTEETT--CHHHHHHHHHTGGGCSEEEEEEEETT
T ss_pred EEEEEEeCCCCCHHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 478899999999999877 9999999999999995 78888888876543345999998864
No 192
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=98.30 E-value=9.3e-07 Score=74.30 Aligned_cols=49 Identities=24% Similarity=0.261 Sum_probs=45.2
Q ss_pred cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
...|+|+++|.|++. ...|.|+|++|++|++++.++.+||||+++|.++
T Consensus 9 ~~~G~l~~~l~y~~~-------------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~ 57 (159)
T 1tjx_A 9 EKLGDICFSLRYVPT-------------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN 57 (159)
T ss_dssp GCCCEEEEEEEEETT-------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEET
T ss_pred CcCCeEEEEEEEcCC-------------------CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeC
Confidence 456999999999988 8899999999999999999999999999999864
No 193
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.30 E-value=1.3e-06 Score=66.82 Aligned_cols=58 Identities=21% Similarity=0.432 Sum_probs=49.4
Q ss_pred CeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 131 gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
+++|..|.++++|+++| |+.||+|++|||+.+. +++++...|....+ ..+.|.|.|+.
T Consensus 5 ~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~~~g-~~v~l~v~R~g 62 (91)
T 2zpm_A 5 EPVLENVQPNSAASXAG-LQAGDRIVXVDGQPLT--QWVTFVMLVRDNPG-XSLALEIERQG 62 (91)
T ss_dssp -CBCSEECTTSHHHHTT-CCTTCEEEEETTEECC--CHHHHHHHHHHCTT-CCEEEEEEETT
T ss_pred CeEEEEECCCChHHhcC-CCCCCEEEEECCeEcC--CHHHHHHHHhcCCC-CeEEEEEEECC
Confidence 46799999999999877 9999999999999996 78999999987643 24999998865
No 194
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=98.27 E-value=1.5e-06 Score=73.71 Aligned_cols=49 Identities=22% Similarity=0.380 Sum_probs=45.4
Q ss_pred cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
...|+|+++|.|.+. ...|.|+|++|++|++++..+.+||||+++|.++
T Consensus 21 ~~~G~l~~~l~y~~~-------------------~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~ 69 (166)
T 2cm5_A 21 EERGKILVSLMYSTQ-------------------QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPD 69 (166)
T ss_dssp CCCCEEEEEEEEETT-------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC
T ss_pred CccceEEEEEEEECC-------------------CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECC
Confidence 556999999999988 8899999999999999999999999999999874
No 195
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=98.23 E-value=3.2e-06 Score=81.69 Aligned_cols=76 Identities=22% Similarity=0.440 Sum_probs=62.3
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.|+|+.+..-. ....+++|..|.++|||+++| |++||+|++|||+.+.+++.+++..+|+...+ ..|.|.|.|..
T Consensus 85 ~giG~~~~~~~---~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g-~~v~l~v~r~g 159 (388)
T 1fc6_A 85 TGVGLEITYDG---GSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEAD-SQVEVVLHAPG 159 (388)
T ss_dssp BBCSEEEEECT---TCSSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTT-CEEEEEEEETT
T ss_pred EEEEEEEEEee---cCCCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCC-CEEEEEEEeCC
Confidence 58999986421 112579999999999999887 99999999999999999999999999976544 35999998865
Q ss_pred C
Q psy4487 193 Q 193 (315)
Q Consensus 193 ~ 193 (315)
.
T Consensus 160 ~ 160 (388)
T 1fc6_A 160 A 160 (388)
T ss_dssp E
T ss_pred C
Confidence 4
No 196
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=98.23 E-value=3.4e-06 Score=67.31 Aligned_cols=58 Identities=22% Similarity=0.428 Sum_probs=49.9
Q ss_pred CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
..|++|..|.++++|+++| |++||.|++|||+.+. ++.++..+|+. +.. +.|.|.|+.
T Consensus 34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~-g~~--v~l~v~R~g 91 (112)
T 2p3w_A 34 SSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLV--DSSELQEAVLT-ESP--LLLEVRRGN 91 (112)
T ss_dssp CSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHHH-CSS--EEEEEEETT
T ss_pred CCCeEEEEECCCChHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHhC-CCe--EEEEEEECC
Confidence 4689999999999999887 9999999999999996 67888888853 433 999998865
No 197
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=98.22 E-value=2.4e-06 Score=70.98 Aligned_cols=47 Identities=34% Similarity=0.503 Sum_probs=42.4
Q ss_pred cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
...|+|++++.|... .|.|+|++|++|++++..+.+||||+++|.++
T Consensus 17 ~~~G~l~~~l~~~~~---------------------~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~ 63 (149)
T 1a25_A 17 ERRGRIYIQAHIDRE---------------------VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPD 63 (149)
T ss_dssp CTTCEEEEEEEESSS---------------------EEEEEEEEEESCCCCSTTSCCCEEEEEEEESC
T ss_pred CcceEEEEEEEecCC---------------------EEEEEEEEeeCCCCCCCCCCcCeEEEEEEECC
Confidence 446999999999655 89999999999999999999999999999874
No 198
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=98.19 E-value=2.6e-06 Score=69.12 Aligned_cols=46 Identities=35% Similarity=0.476 Sum_probs=41.5
Q ss_pred ccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 248 VGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 248 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
..|+|++++.|.. .+|.|+|++|++|++++..+.+||||+++|+|+
T Consensus 3 ~~G~l~~~l~~~~---------------------~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~ 48 (137)
T 3rdl_A 3 KRGRIYLKAEVTD---------------------EKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPD 48 (137)
T ss_dssp CCCEEEEEEEEET---------------------TEEEEEEEEEESCCCCSTTSCCCEEEEEEEECC
T ss_pred cceEEEEEEEEcC---------------------CEEEEEEEEeeCCCCCCCCCCCCeeEEEEEEcC
Confidence 3599999999944 499999999999999999999999999999875
No 199
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=98.17 E-value=2e-06 Score=70.71 Aligned_cols=33 Identities=39% Similarity=0.664 Sum_probs=29.9
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 281 TLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 281 ~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
..+|.|+|++|++|++ +.++.+|||||++|+|+
T Consensus 19 ~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~ 51 (134)
T 2b3r_A 19 NGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPD 51 (134)
T ss_dssp TTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESC
T ss_pred CCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcC
Confidence 4599999999999997 67888999999999986
No 200
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.16 E-value=1.3e-05 Score=78.89 Aligned_cols=75 Identities=27% Similarity=0.345 Sum_probs=59.6
Q ss_pred ccceEEEcCcCCC--CCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487 114 TLGIKVIGGKLLE--DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 114 gLGfsIvGGk~~~--~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~ 191 (315)
.+|+...+-.... ....|++|..|.++|+|+++| |++||+|++|||+.+. +++++.++|+..... |.|.|.|.
T Consensus 345 ~~gl~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~--~~~~~~~~l~~~~~~--v~l~v~R~ 419 (436)
T 4a8c_A 345 TPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAI--IALQIVRG 419 (436)
T ss_pred ccCceeeecccccccCCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCe--EEEEEEEC
Confidence 3566554432211 223589999999999999888 9999999999999995 789999999986654 99999997
Q ss_pred CC
Q psy4487 192 IQ 193 (315)
Q Consensus 192 ~~ 193 (315)
..
T Consensus 420 g~ 421 (436)
T 4a8c_A 420 NE 421 (436)
T ss_pred CE
Confidence 63
No 201
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=98.13 E-value=3.9e-06 Score=69.16 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=41.0
Q ss_pred cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
...|+|+++|.|+.. ..+|.|+|++|+ +++.++.+|||||++|+|+
T Consensus 10 ~~~G~l~~sl~y~~~-------------------~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~ 55 (138)
T 1wfm_A 10 NQAPKLHYCLDYDCQ-------------------KAELFVTRLEAV---TSNHDGGCDCYVQGSVANR 55 (138)
T ss_dssp SSCCEEEEEEEEETT-------------------TTEEEEEEEEEE---CCCCSSCCCEEEEEEEEET
T ss_pred CcceEEEEEEEEeCC-------------------CCEEEEEEEEEE---cCCCCCCcceEEEEEEEcC
Confidence 345999999999988 889999999999 4677889999999999984
No 202
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.11 E-value=4.2e-06 Score=74.24 Aligned_cols=73 Identities=19% Similarity=0.223 Sum_probs=49.7
Q ss_pred ccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCC-CEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 114 TLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAG-DQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 114 gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~G-D~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
|+|++...+.. +..|++|..|.++|||+++| |+.| |+|++|||+.+.+..... ..+++...+ ..|.|.|.|..
T Consensus 3 g~~~~~~~~~~---~~~G~~V~~V~~~SpA~~AG-L~~G~D~I~~ing~~v~~~~~~~-~~~~~~~~g-~~v~l~v~R~~ 76 (209)
T 3rle_A 3 GSSQSVEIPGG---GTEGYHVLRVQENSPGHRAG-LEPFFDFIVSINGSRLNKDNDTL-KDLLKANVE-KPVKMLIYSSK 76 (209)
T ss_dssp -----CCCTTS---SSEEEEEEEECTTSHHHHTT-CCTTTEEEEEETTEECCSSSSHH-HHHHHHTTT-SCEEEEEEETT
T ss_pred chhhhhhccCC---CCCEEEEEEECCCCHHHHCC-CCcCCeEEEEECCEECcCHHHHH-HHHHhcCCC-CEEEEEEEecC
Confidence 45555543322 34689999999999999887 9999 999999999997554322 233444333 34999998864
No 203
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.08 E-value=4.8e-06 Score=66.07 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=47.9
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.|++|..+.|+++|++.| |++||.|++|||+.+. ++.++..++........+.|.|.|+.
T Consensus 37 ~G~~V~~~~pas~A~~aG-l~~GDvI~~ing~~v~--~~~d~~~~~~~~~~g~~v~l~v~R~g 96 (105)
T 2i4s_A 37 LGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDG 96 (105)
T ss_dssp EEEEEEECSCTHHHHHHT-CCTTCEEEEETTEETT--STTHHHHHHHHHTTCSEEEEEEEETT
T ss_pred EEEEEecCCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCeEEEEEEECC
Confidence 367788888888889887 9999999999999996 56677777776443345999998864
No 204
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.06 E-value=1.2e-05 Score=66.42 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=48.7
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.|++|..|.++++|+++ |+.||+|++|||+.+. +++++..+++.......|.|.| |+.
T Consensus 25 ~gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~--~~~dl~~~l~~~~~g~~v~l~V-R~g 82 (125)
T 2hga_A 25 DGVQIDSVVPGSPASKV--LTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITT-DQG 82 (125)
T ss_dssp CCEEEEEECSSSGGGGT--SCTTCEEEEETTEECS--SHHHHHHHHTTCCTTCEEEEEE-TTE
T ss_pred CceEEEEECCCChHHHh--cCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEE-ECC
Confidence 58999999999999975 9999999999999995 7889998887543333589998 754
No 205
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.06 E-value=2.1e-05 Score=66.80 Aligned_cols=65 Identities=26% Similarity=0.404 Sum_probs=55.4
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEE
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVS 189 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~ 189 (315)
...|||.+.. + +|..|.++++|+++| |+.||+|++|||+++.+..+.++.-.++..+.. +.+.|.
T Consensus 99 ~~~lG~~~~~---------g-~v~~v~~~s~a~~aG-l~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~--~~l~v~ 163 (166)
T 1w9e_A 99 TGHVGFIFKN---------G-KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTV--VTITIM 163 (166)
T ss_dssp TSCCSEEEET---------T-EEEEECTTSHHHHTT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSE--EEEEEE
T ss_pred CCcEeEEEeC---------C-EEEEEccCCHHHHcC-CCCCCEEEEECCEECCCCChHHHHHHHhhCCCE--EEEEEE
Confidence 3678998872 3 799999999999887 999999999999999999999998888887654 666654
No 206
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=98.04 E-value=2e-05 Score=74.04 Aligned_cols=59 Identities=24% Similarity=0.258 Sum_probs=50.8
Q ss_pred CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEe
Q psy4487 129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190 (315)
Q Consensus 129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R 190 (315)
..|++|..|.+++||+++| |+.||+|++|||+.+. ++.++..+|........|.|.|.|
T Consensus 241 ~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R 299 (324)
T 1y8t_A 241 TLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPIN--SADALVAAVRSKAPGATVALTFQD 299 (324)
T ss_dssp SSSEEEEEECTTSTTTTTT-CCTTCEEEEETTEECC--SHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEE
Confidence 4689999999999999877 9999999999999996 778899888764333459999988
No 207
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=98.01 E-value=1.3e-05 Score=75.17 Aligned_cols=62 Identities=23% Similarity=0.358 Sum_probs=52.8
Q ss_pred CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
..|++|..|.+++||+++| |++||+|++|||+.+. ++.++..+|+.......|.|.|.|+..
T Consensus 243 ~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~ 304 (318)
T 1te0_A 243 LQGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAI--SALETMDQVAEIRPGSVIPVVVMRDDK 304 (318)
T ss_dssp CCCEEEEEECTTSTTTTTC-CCTTCCEEEETTEECC--CHHHHHHHHHTSCTTCEEEEEEESSSC
T ss_pred CCcEEEEEeCCCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 3689999999999999877 9999999999999995 678999999874333459999998753
No 208
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=98.00 E-value=1.2e-05 Score=76.94 Aligned_cols=62 Identities=31% Similarity=0.480 Sum_probs=53.9
Q ss_pred CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
..|++|..|.++|||+++| |++||.|++|||+.+. ++.++..+|.......+|.|.|.|+..
T Consensus 262 ~~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~ 323 (345)
T 3stj_A 262 QRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGK 323 (345)
T ss_dssp CSSEEEEEECTTSHHHHHT-CCTTCEECEETTEECS--CHHHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred CceEEEEEeccCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 3689999999999999888 9999999999999996 889999999875443469999999753
No 209
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=97.99 E-value=7.4e-06 Score=72.66 Aligned_cols=77 Identities=21% Similarity=0.213 Sum_probs=58.8
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCC-CCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEe
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLA-GDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~-GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R 190 (315)
...||+.+.--........|++|..|.++|||+++| |++ ||.|++|||. + .+++++.++|+...+ ..|.|.|.|
T Consensus 94 ~~~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~~GD~I~~ing~-v--~~~~~l~~~l~~~~g-~~v~l~v~r 168 (209)
T 3rle_A 94 QGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAG-LRPHSDYIIGADTV-M--NESEDLFSLIETHEA-KPLKLYVYN 168 (209)
T ss_dssp SSSSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHT-CCTTTEEEEEESSC-C--CSSSCHHHHHHHTTT-SCEEEEEEE
T ss_pred cCccceEEeecChhHccccceEEEEeCCCChHHHCC-CCCCCCEEEECCCE-e--CCHHHHHHHHHhCCC-CeEEEEEEE
Confidence 457898886422211122689999999999999988 999 9999999997 5 467888888888643 349999988
Q ss_pred CCC
Q psy4487 191 RIQ 193 (315)
Q Consensus 191 ~~~ 193 (315)
...
T Consensus 169 ~~~ 171 (209)
T 3rle_A 169 TDT 171 (209)
T ss_dssp TTT
T ss_pred CCc
Confidence 653
No 210
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=97.95 E-value=8.7e-06 Score=69.62 Aligned_cols=47 Identities=30% Similarity=0.437 Sum_probs=39.6
Q ss_pred cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCC-CCCCCCeEEEeecCC
Q psy4487 247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSN-GQPRCPYAKIYLLPD 314 (315)
Q Consensus 247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~-~~~~~pyvk~~llpd 314 (315)
...|+|++++.|.. ..|.|+|++|++|++++. ++.+|||||++|.++
T Consensus 16 ~~~G~l~~~l~y~~---------------------~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~ 63 (171)
T 2q3x_A 16 PAMGDIQIGMEDKK---------------------GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLEN 63 (171)
T ss_dssp -CCCEEEEEEEEET---------------------TEEEEEEEEEESCCCCC---CCCEEEEEEEEEET
T ss_pred CCccEEEEEEEECC---------------------CEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECC
Confidence 34599999999954 499999999999999985 789999999999875
No 211
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=97.89 E-value=1.8e-05 Score=81.05 Aligned_cols=71 Identities=24% Similarity=0.247 Sum_probs=56.1
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.+||+.+.... .|++|..|.++|||+++| |++||+|++|||+.+. .+++.++|+..+....|+|.|.|+.
T Consensus 485 ~~lG~~~~~~~------~gv~V~~V~~~spA~~AG-L~~GD~I~aInG~~v~---~~~l~~~l~~~~~g~~v~l~v~R~g 554 (597)
T 4fgm_A 485 VNFGAKYKASP------QGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQAT---EQSVKRILERYIPGDTVTIHAFRRD 554 (597)
T ss_dssp CCCSEEEEEET------TEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC---TTTHHHHHTTCCTTCEEEEEEEETT
T ss_pred cccceEEeccC------CeEEEEEeCCCChHHHCC-CCCCCEEEEECCEECC---HHHHHHHHHhcCCCCEEEEEEEECC
Confidence 58999886421 379999999999999988 9999999999999994 3556666765433345999999975
Q ss_pred C
Q psy4487 193 Q 193 (315)
Q Consensus 193 ~ 193 (315)
.
T Consensus 555 ~ 555 (597)
T 4fgm_A 555 E 555 (597)
T ss_dssp E
T ss_pred E
Confidence 3
No 212
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=97.88 E-value=2e-05 Score=75.09 Aligned_cols=61 Identities=23% Similarity=0.346 Sum_probs=52.2
Q ss_pred CCeEEEeecCCChhcccCCCCC-----------CCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLA-----------GDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~-----------GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
.|++|..|.++|||+++| |+. ||+|++|||+.+. +++++..+|.......+|+|.|.|+..
T Consensus 251 ~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~--~~~dl~~~l~~~~~g~~v~l~v~R~g~ 322 (348)
T 3qo6_A 251 SGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVS--NGSDLYRILDQCKVGDEVTVEVLRGDH 322 (348)
T ss_dssp SSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTBCCS--SSHHHHHHHTTCCTTCEEEEEEECSSS
T ss_pred ceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCEEeC--CHHHHHHHHHhCCCcCEEEEEEEECCE
Confidence 699999999999999988 998 9999999999996 668999999765433459999998753
No 213
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=97.84 E-value=3.4e-05 Score=76.30 Aligned_cols=61 Identities=33% Similarity=0.513 Sum_probs=53.4
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
.|++|..|.++|||+++| |+.||+|++|||+.+. ++.++..+|........|.|.|.|+..
T Consensus 282 ~G~~V~~V~~~spA~~aG-L~~GDvI~~vnG~~v~--~~~~l~~~l~~~~~g~~v~l~V~R~g~ 342 (451)
T 3pv2_A 282 QGALVSQVNPNSPAELAG-LKAGDIITQINDTKIT--QATQVKTTISLLRVGSTVKIIVERDNK 342 (451)
T ss_dssp CCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred ceEEEEecCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 689999999999999988 9999999999999995 778999999875444569999999764
No 214
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=97.84 E-value=3.6e-05 Score=75.68 Aligned_cols=62 Identities=31% Similarity=0.480 Sum_probs=52.5
Q ss_pred CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
..|++|..|.++|||+++| |+.||+|++|||+.+. +++++..+|........|.|.|.|+..
T Consensus 262 ~~G~~V~~V~~~spA~~aG-L~~GD~I~~vnG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~ 323 (436)
T 4a8c_A 262 QRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLGLLRNGK 323 (436)
T ss_pred CcceEEEEECCCChHHHCC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 3689999999999999888 9999999999999996 678888888765433459999998753
No 215
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=97.83 E-value=3.9e-05 Score=72.36 Aligned_cols=58 Identities=28% Similarity=0.459 Sum_probs=51.1
Q ss_pred CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
..|++|..|.++|||+++| |+.||.|++|||+.+. +++++.++|+. .. .|.|.|.|+.
T Consensus 255 ~~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~--~~~~l~~~l~~-~~--~v~l~v~R~g 312 (325)
T 1lcy_A 255 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRT-QS--QLAVQIRRGR 312 (325)
T ss_dssp SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHTT-CS--SEEEEEEETT
T ss_pred CCCeEEEEeCcCChHHHCC-CCCCCEEEEECCEEcC--CHHHHHHHHhC-CC--eEEEEEEECC
Confidence 4689999999999999988 9999999999999995 78899998876 33 4999999975
No 216
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=97.81 E-value=1.2e-05 Score=78.72 Aligned_cols=75 Identities=23% Similarity=0.270 Sum_probs=56.6
Q ss_pred CCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeC
Q psy4487 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191 (315)
Q Consensus 112 ~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~ 191 (315)
..|+||.+...... .....++|..|.++|||+++| |+.||+|++|||+.+.+.. +..+|+. .+ ..|.|.|.|.
T Consensus 73 ~~G~~~~l~~~~~~-~~~~~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~~v~~~~---~~~~l~~-~g-~~v~l~v~R~ 145 (403)
T 3k50_A 73 SYGFDYTLYKVLDN-DTAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKV---ESELLQG-ST-RQLQIGVYKE 145 (403)
T ss_dssp BCSEEEEEEECTTC-SSCEEEEEEEECTTSHHHHTT-CCTTCEEEEETTBCBCTTT---GGGGTSC-SC-EEEEEEEEEE
T ss_pred ccceEEEEEEcCCC-CcceeEEEEEeCCCChHHHcC-CCCCCEEEEECCEEccchh---HHHHhhC-CC-CEEEEEEEeC
Confidence 57888888753321 111248999999999999988 9999999999999998774 5566666 33 3599999887
Q ss_pred CC
Q psy4487 192 IQ 193 (315)
Q Consensus 192 ~~ 193 (315)
..
T Consensus 146 g~ 147 (403)
T 3k50_A 146 VV 147 (403)
T ss_dssp EC
T ss_pred Cc
Confidence 53
No 217
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=97.79 E-value=2.8e-05 Score=76.89 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=51.9
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~ 192 (315)
.|++|..|.++|+|+++| |++||.|++|||+.+. +++++.++|+..+.. |.|.|.|..
T Consensus 386 ~Gv~V~~V~~gspA~~aG-L~~GD~I~~Vng~~v~--~~~~~~~~l~~~~~~--v~l~v~R~g 443 (451)
T 3pv2_A 386 IGVQVVGASENSAGWRAG-IRPGDIIISANKKPVT--DVKSLQTIAQEKKKE--LLVQVLRGP 443 (451)
T ss_dssp EEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHTTSSCSC--EEEEEEETT
T ss_pred CceEEEEECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHhcCCCe--EEEEEEECC
Confidence 589999999999999988 9999999999999995 779999999885544 999999875
No 218
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=97.64 E-value=6.2e-05 Score=69.43 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=43.8
Q ss_pred ccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 248 VGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 248 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
..|.|++.+.|.+. ...|.|+|++|++|++++..+.+|||||++|++|
T Consensus 137 ~~G~i~vsl~y~~~-------------------~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~ 184 (296)
T 1dqv_A 137 DLGELNFSLCYLPT-------------------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISE 184 (296)
T ss_dssp CCCEEEEEEEEETT-------------------TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTT
T ss_pred ccceEEEEEEeccc-------------------cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeC
Confidence 35999999999887 7899999999999999999899999999999864
No 219
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=97.54 E-value=0.00011 Score=66.75 Aligned_cols=48 Identities=25% Similarity=0.265 Sum_probs=43.4
Q ss_pred ccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 248 VGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 248 ~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
..|.|.+.+.|.+. ...|.|+|++|++|++++.++.+|||||++|+++
T Consensus 135 ~~G~i~l~l~~~p~-------------------~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~ 182 (284)
T 2r83_A 135 KLGDICFSLRYVPT-------------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN 182 (284)
T ss_dssp CCCEEEEEEEEETT-------------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEET
T ss_pred ccccEEEEEEecCc-------------------CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeC
Confidence 35899999999877 7799999999999999999999999999999864
No 220
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=97.40 E-value=2.3e-05 Score=74.04 Aligned_cols=59 Identities=34% Similarity=0.509 Sum_probs=0.0
Q ss_pred CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
..|++|..|.++|||+++| |+.||+|++|||+.+. +++++..+|+. +. .|+|.|.|+..
T Consensus 253 ~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~-~~--~v~l~v~R~g~ 311 (332)
T 3num_A 253 ISGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVV--SANDVSDVIKR-ES--TLNMVVRRGNE 311 (332)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCceEEEEeccCCChHHcC-CCCCCEEEEECCEECC--CHHHHHHHHhC-CC--eEEEEEEECCE
Confidence 3589999999999999877 9999999999999995 67888888875 33 38999988653
No 221
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.28 E-value=9.1e-05 Score=73.19 Aligned_cols=61 Identities=26% Similarity=0.396 Sum_probs=50.3
Q ss_pred CCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 130 ~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
.|++|..|.++++|+++| |+.||+|++|||+.+. ++.++..+|.......+|.|.|.|+..
T Consensus 286 ~G~~V~~V~~gspA~~AG-L~~GDvI~~inG~~v~--~~~~l~~~l~~~~~g~~v~l~v~R~g~ 346 (448)
T 1ky9_A 286 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPIS--SFAALRAQVGTMPVGSKLTLGLLRDGK 346 (448)
T ss_dssp CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCC--SSHHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred CceEEEEeccCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 589999999999999876 9999999999999996 457888888753222349999988753
No 222
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.24 E-value=4.5e-05 Score=75.36 Aligned_cols=60 Identities=23% Similarity=0.464 Sum_probs=0.0
Q ss_pred CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
..|++|..|.++++|++.| |+.||+|++|||+.+. +++++.++|+..... |.|.|.|...
T Consensus 382 ~~gv~V~~V~~gspA~~aG-L~~GDiI~~vng~~v~--~~~~l~~~l~~~~~~--v~l~v~R~g~ 441 (448)
T 1ky9_A 382 DQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVK--NIAELRKVLDSKPSV--LALNIQRGDS 441 (448)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCeEEEEEecCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHcCCCe--EEEEEEECCE
Confidence 3589999999999999887 9999999999999996 788999999876654 8899988753
No 223
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=97.16 E-value=0.00073 Score=71.70 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=57.0
Q ss_pred CccceEEEcCcCCCCCCCCeEEEeecCC--------ChhcccC-CCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCc
Q psy4487 113 STLGIKVIGGKLLEDGTRGAIIEKVKKG--------SPADLEG-HLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQ 183 (315)
Q Consensus 113 ~gLGfsIvGGk~~~~g~~gi~Is~V~pG--------gpA~~~G-~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~ 183 (315)
.|+|+.+.- . ..+++|..|.+| +||+++| .|+ ||+|++|||+.+.++. +++.+|+...+ .+
T Consensus 737 ~g~G~~~~~--~----~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g-~~ 806 (1045)
T 1k32_A 737 GRIACDFKL--D----GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAG-TS 806 (1045)
T ss_dssp CBCSEEEEE--E----TTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTT-SE
T ss_pred ceecEEEEE--e----CCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCC-CE
Confidence 588888753 1 247999999998 9999887 399 9999999999998775 78888887655 35
Q ss_pred EEEEEEeCC
Q psy4487 184 VELIVSRRI 192 (315)
Q Consensus 184 V~LvV~R~~ 192 (315)
|.|.|.|..
T Consensus 807 v~l~v~r~~ 815 (1045)
T 1k32_A 807 ARIRLSGKG 815 (1045)
T ss_dssp EEEEEECSS
T ss_pred EEEEEECCC
Confidence 999999865
No 224
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=97.03 E-value=0.00061 Score=55.08 Aligned_cols=39 Identities=18% Similarity=0.011 Sum_probs=34.3
Q ss_pred eeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecC
Q psy4487 275 FYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLP 313 (315)
Q Consensus 275 ~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llp 313 (315)
++|..+...|.|+|++|++|++++..+.+||||++++.+
T Consensus 6 ~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~ 44 (133)
T 2ep6_A 6 SGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN 44 (133)
T ss_dssp CCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT
T ss_pred ccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC
Confidence 345556889999999999999999889999999999865
No 225
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=96.79 E-value=0.00065 Score=58.05 Aligned_cols=32 Identities=25% Similarity=0.124 Sum_probs=27.3
Q ss_pred cceEEEEEEeecCCCCCCC----------CCCCCCeEEEeec
Q psy4487 281 TLRLVVTLMCAASLVPRSN----------GQPRCPYAKIYLL 312 (315)
Q Consensus 281 ~~~L~v~i~~a~~l~~~~~----------~~~~~pyvk~~ll 312 (315)
...|.|+|++|++|++++. .+.+||||+++|-
T Consensus 28 ~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~ 69 (157)
T 2fk9_A 28 NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD 69 (157)
T ss_dssp EEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEET
T ss_pred ccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEEC
Confidence 4579999999999999872 3679999999984
No 226
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=96.76 E-value=0.0019 Score=66.43 Aligned_cols=47 Identities=34% Similarity=0.503 Sum_probs=42.2
Q ss_pred cccceeEEEEEEcCCcceeEEEEeeeeeeeccCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecCC
Q psy4487 247 SVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314 (315)
Q Consensus 247 ~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llpd 314 (315)
...|+|.+++.|+.. .|.|+|++|++|++++..+.+|||||++|+|+
T Consensus 158 ~~~g~i~~~~~~~~~---------------------~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~ 204 (674)
T 3pfq_A 158 ERRGRIYIQAHIDRE---------------------VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPD 204 (674)
T ss_dssp CCSCEEEEEEEECSS---------------------EEEEEEEEEESCCCCSTTSSCCEEEEEEEESC
T ss_pred cccccccccceeccc---------------------eeeeeeecccccCCCCcccccCcccccccccC
Confidence 346888888888766 89999999999999999999999999999986
No 227
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=96.63 E-value=0.0013 Score=54.21 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=25.2
Q ss_pred CCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecC
Q psy4487 279 SGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLP 313 (315)
Q Consensus 279 ~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llp 313 (315)
.....|.|+|++|++|++++..+.+||||++++.+
T Consensus 17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~ 51 (153)
T 3b7y_A 17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYD 51 (153)
T ss_dssp TTCEEEEEEEEEEESCC-------CCEEEEEEEEE
T ss_pred CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEEC
Confidence 34678999999999999999888999999999985
No 228
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=96.56 E-value=0.002 Score=52.88 Aligned_cols=31 Identities=19% Similarity=0.521 Sum_probs=29.1
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCCeEEEee
Q psy4487 281 TLRLVVTLMCAASLVPRSNGQPRCPYAKIYL 311 (315)
Q Consensus 281 ~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~l 311 (315)
..+|.|+|++|++|++++..+.+||||++++
T Consensus 16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~ 46 (148)
T 3kwu_A 16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQV 46 (148)
T ss_dssp CEEEEEEEEEEESCCCCSTTSCCCEEEEEEE
T ss_pred ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEE
Confidence 5689999999999999999999999999987
No 229
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=96.30 E-value=0.0044 Score=62.88 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=47.4
Q ss_pred CCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCC--------HHHHHHHHHhcCCCCcEEEEEEeCCC
Q psy4487 129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKS--------FQDVEDIIAESRQEPQVELIVSRRIQ 193 (315)
Q Consensus 129 ~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t--------~~eav~iLk~s~~~~~V~LvV~R~~~ 193 (315)
..|++|..|.++|||++ + |+.||.|++|||+.+.... ..+...+|....-..+|+|.|.|+..
T Consensus 276 ~~Gv~V~~V~~~spA~~-a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk 346 (539)
T 4fln_A 276 NEGVLVRRVEPTSDASK-V-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGE 346 (539)
T ss_dssp SBCEEEEEECTTSGGGG-T-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTE
T ss_pred cCceeeecccCCChHHh-C-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCE
Confidence 36999999999999985 5 9999999999999996421 11234455554444469999999764
No 230
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=95.48 E-value=0.022 Score=57.71 Aligned_cols=57 Identities=16% Similarity=0.245 Sum_probs=48.6
Q ss_pred CCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHHhcCCCCcEEEEE
Q psy4487 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIV 188 (315)
Q Consensus 128 g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk~s~~~~~V~LvV 188 (315)
+..+++|+.|.++++|+..| ++.||.|++|||+.+. +.++..++|+++++. -+.|.+
T Consensus 413 ~~~gVvvs~V~~~s~a~~~g-~~~gdiI~~vNg~~V~--s~~~l~~~l~~~k~~-~l~~~~ 469 (539)
T 4fln_A 413 GEQIVILSQVLANEVNIGYE-DMNNQQVLKFNGIPIR--NIHHLAHLIDMCKDK-YLVFEF 469 (539)
T ss_dssp TCCCEEEEEECCCGGGTTCS-SCCSEEEEEETTEECC--SHHHHHHHHHTCCSS-EEEEEE
T ss_pred CceEEEEEEecCCchhhhcC-CCCCCEEEeECCEEcC--CHHHHHHHHHHcCCC-eEEEEE
Confidence 45689999999999999876 9999999999999995 889999999999875 244443
No 231
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=95.31 E-value=0.012 Score=50.41 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=25.5
Q ss_pred CcceEEEEEEeecCCC-CCCCCCCCCCeEEEeec
Q psy4487 280 GTLRLVVTLMCAASLV-PRSNGQPRCPYAKIYLL 312 (315)
Q Consensus 280 ~~~~L~v~i~~a~~l~-~~~~~~~~~pyvk~~ll 312 (315)
...+|.|+|++|++|+ ..+.++ +||||++++.
T Consensus 34 ~~~~L~V~V~~A~~L~~~~~~~~-sDPYv~v~~~ 66 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKKNWFG-PSPYVEVTVD 66 (173)
T ss_dssp CCEEEEEEEEEEEECCCC--CCC-CCEEEEEEET
T ss_pred CceEEEEEEEEeECCCCcccCCC-CCeEEEEEEC
Confidence 3667999999999999 555554 9999999985
No 232
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=94.00 E-value=0.04 Score=53.88 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=30.2
Q ss_pred cCCcceEEEEEEeecCCCCCCCCCCCCCeEEEeecC
Q psy4487 278 DSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLP 313 (315)
Q Consensus 278 ~~~~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llp 313 (315)
..+...|.|+|++|++|++++..+.+||||++++.+
T Consensus 383 ~~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~ 418 (510)
T 3jzy_A 383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGS 418 (510)
T ss_dssp ---CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT
T ss_pred CCCCceEEEEeceeecCCCCCCCCCCCeEEEEEECC
Confidence 345668999999999999999999999999999853
No 233
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=93.36 E-value=0.06 Score=54.49 Aligned_cols=31 Identities=23% Similarity=0.212 Sum_probs=27.9
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCCeEEEeec
Q psy4487 281 TLRLVVTLMCAASLVPRSNGQPRCPYAKIYLL 312 (315)
Q Consensus 281 ~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~ll 312 (315)
-..|.|+|++|++|+. |..+.+|||||++|.
T Consensus 393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~ 423 (540)
T 3nsj_A 393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFG 423 (540)
T ss_dssp EEEEEEEEEEEESCCC-SSCSCCCEEEEEEET
T ss_pred ccEEEEEEEEccCCCc-ccCCCcCeEEEEEEC
Confidence 4579999999999998 888899999999984
No 234
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=90.55 E-value=0.22 Score=51.13 Aligned_cols=34 Identities=15% Similarity=0.094 Sum_probs=29.7
Q ss_pred CcceEEEEEEeecCCCCCCC--CCCCCCeEEEeecC
Q psy4487 280 GTLRLVVTLMCAASLVPRSN--GQPRCPYAKIYLLP 313 (315)
Q Consensus 280 ~~~~L~v~i~~a~~l~~~~~--~~~~~pyvk~~llp 313 (315)
....|.|+|+.|++|++.+. ++.+||||+++|..
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g 530 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHG 530 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEES
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEec
Confidence 46679999999999999884 68899999999964
No 235
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=68.43 E-value=3.1 Score=35.11 Aligned_cols=26 Identities=23% Similarity=0.246 Sum_probs=22.4
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCCeEEEee
Q psy4487 281 TLRLVVTLMCAASLVPRSNGQPRCPYAKIYL 311 (315)
Q Consensus 281 ~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~l 311 (315)
...|.|+|.+|.+|| +.+|||||+.+
T Consensus 20 ~msL~V~l~~a~~Lp-----g~~Dp~akv~F 45 (144)
T 3l9b_A 20 HMALIVHLKTVSELR-----GRADRIAKVTF 45 (144)
T ss_dssp CEEEEEEEEEEESCC-----SCEEEEEEEEE
T ss_pred cEEEEEEEEEecCCC-----CCCCCeEEEEE
Confidence 557999999999998 36899999865
No 236
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=66.64 E-value=4.3 Score=42.77 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=24.7
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCCeEEEeecC
Q psy4487 281 TLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLP 313 (315)
Q Consensus 281 ~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llp 313 (315)
...|.|+|+.|++|+. ..+|||||+.|..
T Consensus 677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g 705 (799)
T 2zkm_X 677 ATTLSITVISGQFLSE----RSVRTYVEVELFG 705 (799)
T ss_dssp CEEEEEEEEEEESCCS----SCCCEEEEEEEEC
T ss_pred eeeEEEEEEeccccCc----cCCCcEEEEEEEe
Confidence 4579999999999985 3589999999963
No 237
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=63.63 E-value=5.7 Score=42.07 Aligned_cols=29 Identities=10% Similarity=0.214 Sum_probs=24.7
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCCeEEEeecC
Q psy4487 281 TLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLP 313 (315)
Q Consensus 281 ~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llp 313 (315)
...|.|+|+.|++|+.+ .+|||||+.|..
T Consensus 649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g 677 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK----QISSYVEVEMYG 677 (816)
T ss_dssp CEEEEEEEEEEECCCSS----CCCEEEEEEEES
T ss_pred ceEEEEEEEEcccCCCC----CCCCeEEEEEeC
Confidence 35799999999999854 489999999874
No 238
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=61.81 E-value=6.3 Score=42.17 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=24.7
Q ss_pred cceEEEEEEeecCCCCCCCCCCCCCeEEEeecC
Q psy4487 281 TLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLP 313 (315)
Q Consensus 281 ~~~L~v~i~~a~~l~~~~~~~~~~pyvk~~llp 313 (315)
...|.|+|+.|++|+.+ ..|||||+.|..
T Consensus 724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g 752 (885)
T 3ohm_B 724 ANALRVKVISGQFLSDR----KVGIYVEVDMFG 752 (885)
T ss_dssp CEEEEEEEEEEESCCSS----CCCEEEEEEEES
T ss_pred ceEEEEEEEEeccCccc----CCCcEEEEEEeC
Confidence 45799999999999853 489999999974
No 239
>2xiw_A DNA-binding protein 7D; HET: MSE; 1.50A {Sulfolobus acidocaldarius}
Probab=47.40 E-value=7.3 Score=28.77 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=19.4
Q ss_pred ceeEEEEEEcCCcc------eeEEE-EeeeeeeeccCCcce
Q psy4487 250 GRIQVKFYLDSGTL------RLVVT-LIHSVKFYLDSGTLR 283 (315)
Q Consensus 250 g~i~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~ 283 (315)
|.+.|+|.|...-+ +.+|. +=.-|.|-|+-|...
T Consensus 11 gsvkvkFkykGeekEVDtSKikkVwrvGKmvsFtYddnGKt 51 (79)
T 2xiw_A 11 GSVKVKFLLNGEEKEVDTSKIRDVSRQGKNVKFLYNDNGKY 51 (79)
T ss_dssp --CEEEEEETTEEEEEEGGGEEEEEEETTEEEEEEEETTEE
T ss_pred CcEEEEEEEcCccccccHHHHHHHHHhcceeEEEEcCCCcc
Confidence 88999999954422 22221 222288988887765
No 240
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=28.83 E-value=39 Score=34.43 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=20.7
Q ss_pred eEEEeecCCChhcccCCCCCCCEEEEECCEeCC
Q psy4487 132 AIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMR 164 (315)
Q Consensus 132 i~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~ 164 (315)
+||..+.... + .+..||+|++|||+++.
T Consensus 98 i~V~dv~~~~-s----~I~vGdEIlsING~pv~ 125 (583)
T 3dor_A 98 FYFVDIMTFS-S----EIRVGDELLEVDGAPVQ 125 (583)
T ss_dssp EEEEEECSSC-C----SSCTTCEEEEETTEEHH
T ss_pred EEEEeccccc-c----CCCCCCEEEEECCccHH
Confidence 7776663222 1 49999999999998874
No 241
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=25.28 E-value=31 Score=27.01 Aligned_cols=14 Identities=14% Similarity=0.067 Sum_probs=11.2
Q ss_pred CCCCCCCeEEEeec
Q psy4487 299 NGQPRCPYAKIYLL 312 (315)
Q Consensus 299 ~~~~~~pyvk~~ll 312 (315)
.++.+||||+++|-
T Consensus 34 ~~~~~DPyv~v~l~ 47 (136)
T 1gmi_A 34 QTFLLDPYIALNVD 47 (136)
T ss_dssp CCCCCCEEEEEEET
T ss_pred CCcCcCcEEEEEEC
Confidence 35679999999973
No 242
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Probab=20.20 E-value=39 Score=28.59 Aligned_cols=79 Identities=8% Similarity=0.049 Sum_probs=31.1
Q ss_pred EEEEEeccCCCCCCCCCccceEEEcCcCCCCCCCCeEEEeecCCChhcccCCCCCCCEEEEECCEeCCCCCHHHHHHHHH
Q psy4487 97 GHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIA 176 (315)
Q Consensus 97 ~~v~L~k~~~~~~~~~~gLGfsIvGGk~~~~g~~gi~Is~V~pGgpA~~~G~L~~GD~ILeVNG~~l~g~t~~eav~iLk 176 (315)
.+.+|+.++-.+..+..-||-.+.+|+... -.-...+++|..|++|.|..+ ..+.|.++|+
T Consensus 62 P~~~ir~nkmlT~kgadRlq~gMg~gkG~p----------------~~wvArVk~G~ilfei~~~~v---~~~~A~eAlr 122 (151)
T 2pa2_A 62 PFHVIRINKMLSCAGADRLQTGMRGAFGKP----------------QGTVARVHIGQVIMSIRTKLQ---NKEHVIEALR 122 (151)
T ss_dssp CC---------------------------------------------CCEEEECTTBEEEEEEECGG---GHHHHHHHHH
T ss_pred CCeeEeecccccccchhhhhcccccCCCCc----------------cEEEEEECCCCEEEEEECCCC---CHHHHHHHHH
Confidence 444555444223344455666666665431 111234777999999988554 5677777776
Q ss_pred hcCC--CCcEEEEEEeCCCC
Q psy4487 177 ESRQ--EPQVELIVSRRIQP 194 (315)
Q Consensus 177 ~s~~--~~~V~LvV~R~~~~ 194 (315)
.+.. .....+++...+.-
T Consensus 123 ~A~~KlP~ktkiv~~~~~gf 142 (151)
T 2pa2_A 123 RAKFKFPGRQKIHISKKWGF 142 (151)
T ss_dssp HHGGGSSSCEEEEEESCCCC
T ss_pred HHHhhCCCcEEEEEeccCCC
Confidence 6433 22366776655543
Done!