RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4487
(315 letters)
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 116 bits (291), Expect = 2e-32
Identities = 57/116 (49%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 82 HPLSWKPSADGKYMIGHMILRKSGDR---YPSASSTLGIKVIGGKLLEDGTRGAIIEKVK 138
HP++W+PS DG +IG ++L K + + LG+KV+GGK+ E G A I KVK
Sbjct: 14 HPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVK 73
Query: 139 KGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQP 194
KGS AD GHL GD+V+EWNGR ++G +F++V +II ES+ EPQVEL+VSR
Sbjct: 74 KGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGPS 129
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 87.1 bits (216), Expect = 1e-21
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 88 PSADGKYMIGHMI--LRKSGDRYPSASSTLGIKVIGGK--LLEDGTRGAIIEKVKKGSPA 143
+ G Y+ H + + + + + LGI+++GGK G GA I K+ G A
Sbjct: 3 SGSSGHYIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSA 62
Query: 144 DLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQP 194
+ G L+ G QV+EWNG + K++++V+ II++ E E+ V +
Sbjct: 63 EQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGE--AEICVRLDLNM 111
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 66.6 bits (163), Expect = 3e-14
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
S G +++GG + + +I V AD +G L GD+++ +G + GK+ + V
Sbjct: 19 ESGFGFRILGGD---EPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYV 75
Query: 172 EDIIAESRQEPQVELIVSRRIQPK 195
D++ + + QV L V R++
Sbjct: 76 IDLMHHAARNGQVNLTVRRKVLSG 99
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 63.5 bits (155), Expect = 5e-13
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+ LG + + G+ ++ + A +G L AGD++IE NG + GKS ++V
Sbjct: 21 TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEV 80
Query: 172 EDIIAESRQEPQVELIVSRRIQP 194
++ ++ E V L+V R+ +
Sbjct: 81 VSLLRSTKMEGTVSLLVFRQEEA 103
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 62.7 bits (153), Expect = 6e-13
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+ G +++GG + I + AD +G L +GD++I +G + GKS Q V
Sbjct: 12 ETGFGFRILGGN---EPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLV 68
Query: 172 EDIIAESRQEPQVELIVSRR 191
++ ++ ++ V L V +
Sbjct: 69 VQLMQQAAKQGHVNLTVRQT 88
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 61.9 bits (151), Expect = 1e-12
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LGIK++ G I + +G A +G L + D+V+ NG ++ + + I
Sbjct: 18 LGIKLVRRT----DEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQI 73
Query: 175 IAESRQEPQVELIVSRRIQP 194
I S + V L ++R +P
Sbjct: 74 IQASGER--VNLTIARPGKP 91
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 60.9 bits (148), Expect = 3e-12
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 109 PSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
P S G + G + V+ GSPA+ L D++I N
Sbjct: 13 PGKSLDFGFTIKWDI------PGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDS 65
Query: 169 QDVEDIIAESRQEPQVELIVSR 190
++ E+ +A++++ + + V R
Sbjct: 66 KEWEEAMAKAQETGHLVMDVRR 87
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 61.4 bits (149), Expect = 3e-12
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAI-IEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
+ GI++ G + I ++ SPA+ G L GD+V+ NG +F++
Sbjct: 26 VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEE 85
Query: 171 VEDIIAESRQEPQVELIVSRRIQPKYAPT 199
++ +S +V L + + P+
Sbjct: 86 ANQLLRDSSITSKVTLEIEFDVAESVIPS 114
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 61.3 bits (149), Expect = 4e-12
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+ LG + + G+ ++ + A +G L AGD++IE NG + GKS ++V
Sbjct: 40 TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEV 99
Query: 172 EDIIAESRQEPQVELIVSRR 191
++ ++ E V L+V R+
Sbjct: 100 VSLLRSTKMEGTVSLLVFRQ 119
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 60.8 bits (148), Expect = 5e-12
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
+G+ ++ K G ++ V KG AD++G L AGDQ++ +GRS+ G S + ++
Sbjct: 23 MGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAEL 82
Query: 175 IAESRQEPQVELIVSRR 191
+ + V L V+++
Sbjct: 83 MTRTSSV--VTLEVAKQ 97
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 60.9 bits (148), Expect = 6e-12
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+ LG + GG + + + +V A EG + G++V+ NG+S++G + D
Sbjct: 26 GAGLGFSLAGGA--DLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDA 83
Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTLS 201
I+ ++R+ Q ++ + S
Sbjct: 84 LAILRQAREPRQAVIVTRKLTPEAMPDLNS 113
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 60.9 bits (148), Expect = 6e-12
Identities = 16/87 (18%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+L + + GG G ++ V +G A+ G ++ GD+++ NG+ + + +
Sbjct: 27 EGSLDLALEGGVDSPVG--KVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEA 84
Query: 172 EDIIAESRQEP--QVELIVSRRIQPKY 196
E + ++ + ++L+V+ +Y
Sbjct: 85 EAALQKAWNQGGDWIDLVVAVCPPKEY 111
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 60.0 bits (146), Expect = 6e-12
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LG+ ++G + G + + KG AD +G L+ GDQ++ NG +R + + V +
Sbjct: 18 LGLSIVGKR----NDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAAL 73
Query: 175 IAESRQEPQVELIVSRR 191
+ S V L V R
Sbjct: 74 LKCSLGT--VTLEVGRI 88
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 59.9 bits (146), Expect = 7e-12
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 112 SSTLGIKVIGGK-LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
+T G + GG + +R +I V+ G PAD EG + GD+++ +G + G + +
Sbjct: 13 GNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAE 72
Query: 171 VEDIIAESRQEPQVELIVSRRIQP 194
I+ + QE L++ +
Sbjct: 73 AMSILKQCGQE--AALLIEYDVSE 94
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 62.5 bits (152), Expect = 7e-12
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 112 SSTLGIKVIGGKLLED--GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
LG + GG + G + K+ +G A +G L GD+++ N + +
Sbjct: 110 PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHE 169
Query: 170 DVEDIIAESRQEPQVELIVSRRIQPK 195
D + + V L V++ +
Sbjct: 170 DAVAALKNTYDV--VYLKVAKPSNAE 193
Score = 57.5 bits (139), Expect = 4e-10
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 112 SSTLGIKVIGGK--LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
+S LG + GG I K+ G A +G L D ++ N +R +
Sbjct: 15 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 74
Query: 170 DVEDIIAESRQEPQVELIVSRRIQPKY 196
+ + E+ V L V RR P
Sbjct: 75 AAVEALKEAGS--IVRLYVMRRKPPAE 99
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 61.0 bits (148), Expect = 7e-12
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 12/121 (9%)
Query: 83 PLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAI-IEKVKKGS 141
+ + + L SG S+ LG+ + G K E GT I I+ + G
Sbjct: 13 DCYALSLESSEQLTLEIPLNDSG------SAGLGVSLKGNKSRETGTDLGIFIKSIIHGG 66
Query: 142 PADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQ-----VELIVSRRIQPKY 196
A +G L DQ+I NG ++ GKS + + + S ++L++ RR P
Sbjct: 67 AAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGPSS 126
Query: 197 A 197
Sbjct: 127 G 127
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 62.1 bits (151), Expect = 9e-12
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LGI + + G +I +KKGS A G L GD+++ + + S +D I
Sbjct: 121 LGITISSPSSRKPGD-PLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQI 179
Query: 175 IAESRQEPQVELIVSR 190
+ + V+L + +
Sbjct: 180 LQQCEDL--VKLKIRK 193
Score = 60.2 bits (146), Expect = 5e-11
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAI-IEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
+ GI++ G + I ++ SPA+ G L GD+V+ NG +F++
Sbjct: 17 VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEE 76
Query: 171 VEDIIAESRQEPQVELIVSRRIQPKYAP 198
++ +S +V L + + P
Sbjct: 77 ANQLLRDSSITSKVTLEIEFDVAESVIP 104
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 61.7 bits (150), Expect = 1e-11
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 112 SSTLGIKVIGGKLLE-DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
+T G + GG + + +R +I V+ G PAD EG + GD+++ +G + G + +
Sbjct: 116 GNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAE 175
Query: 171 VEDIIAESRQEPQVELIVSRRIQ 193
I+ + QE L++ +
Sbjct: 176 AMSILKQCGQE--ATLLIEYDVS 196
Score = 55.1 bits (133), Expect = 3e-09
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+TLG+ V GG D + +++G A L GD + NG ++ ++
Sbjct: 18 GTTLGLTVSGGI---DKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEI 74
Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAP 198
++ + +V L V + P
Sbjct: 75 ISLLKNVGE--RVVLEVEYELPPVSIQ 99
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 58.4 bits (142), Expect = 2e-11
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
S G V+GG + I+ + PA L+G + GD ++ N + G + V
Sbjct: 10 SRGFGFTVVGGD---EPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQV 66
Query: 172 EDIIAESRQEPQVELIVSR 190
I V+L + R
Sbjct: 67 VKIFQSIPIGASVDLELCR 85
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 58.8 bits (143), Expect = 2e-11
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAI-IEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
LGI + G + I ++ + K S + +G + GDQ+I +G +++G + Q
Sbjct: 14 VQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQ 73
Query: 171 VEDIIAESRQEPQVELIVSRRIQP 194
+++ + Q V L + RR +
Sbjct: 74 AVEVLRHTGQT--VLLTLMRRGET 95
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 59.4 bits (144), Expect = 2e-11
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
+ S LGI + L I+++K S D G L GD ++ +G SM S
Sbjct: 24 TPGSALGISLTTTSLRNKS--VITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLL 81
Query: 170 DVEDIIAESRQEPQVELIVSRRIQPKYAPTLS 201
+ ++A ++ V L + Q + S
Sbjct: 82 EATKLLASISEK--VRLEILPVPQSQRPLRPS 111
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 58.5 bits (142), Expect = 3e-11
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 16/100 (16%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
S+ LG ++GG+ G I + G PADL G L GDQ++ NG +R S +
Sbjct: 21 STGLGFNIVGGEX----GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQA 76
Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRDK 211
+ + Q V +I + + Y R K
Sbjct: 77 AIALKNAGQT--VTIIAQYK----------PEEYSRFEAK 104
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 58.9 bits (143), Expect = 3e-11
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
LG ++GG G ++ V A +G L GDQ+I NG+S+ G + ++
Sbjct: 35 PDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEA 94
Query: 172 EDIIAESRQEPQVELIVSRRIQP 194
I+ ++ V L+V +
Sbjct: 95 VAILKRTKGT--VTLMVLSSDET 115
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 58.1 bits (141), Expect = 3e-11
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
A LG+ + + G I + +G +++ L GD + ++NG ++ G FQ
Sbjct: 18 AGKELGLSLSPNE------IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQV 71
Query: 171 VEDIIAESRQEPQVELIVSRR 191
+ + + V + V+R
Sbjct: 72 SYALFKGANGK--VSMEVTRP 90
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 58.1 bits (141), Expect = 3e-11
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
LGI + GGK + +I ++ G PAD G L GD ++ NG ++R ++
Sbjct: 20 HEGLGISITGGK---EHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEA 76
Query: 172 EDIIAESRQEPQVELIVSRRIQPKY 196
I+++ R E +E V +
Sbjct: 77 VTILSQQRGE--IEFEVVYVALEHH 99
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 57.6 bits (140), Expect = 4e-11
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
++LGI V GG G ++ V A+ +G + GD+V+ NG S+ G + +
Sbjct: 15 DNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQA 74
Query: 172 EDIIAESRQEPQVELIVSRRIQP 194
+ + + Q V L++ + P
Sbjct: 75 VETLRNTGQV--VHLLLEKGQSP 95
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 58.7 bits (142), Expect = 5e-11
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 7/108 (6%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LG V II + +G A+ G + AGD ++ N R + S+ ++
Sbjct: 22 LGFLVKERV----SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEV 77
Query: 175 IAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRDKPSVLVTSPGSP 222
+ E V LI+ P+ T + + ++ VT P P
Sbjct: 78 LRGIASETHVVLILRG---PEGFTTHLETTFTGDGTPKTIRVTQPLGP 122
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 57.4 bits (139), Expect = 5e-11
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
G V G +G ++ ++ P DL G L D++++ N R V +
Sbjct: 21 FGFSVADGL----LEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPL 75
Query: 175 IAESRQEPQVELIVSRR 191
IAES +++L++SR
Sbjct: 76 IAES--GNKLDLVISRN 90
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 58.2 bits (141), Expect = 5e-11
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 112 SSTLGIKVIGGKLLEDGTR------GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRG 165
+ +LGI ++GG+ + + G I++V + SPA L GD+++E +G ++
Sbjct: 26 NVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQN 85
Query: 166 KSFQDVEDIIAESRQEPQVELIVSRRIQ-PKYAP 198
S + + I + V IV P+ P
Sbjct: 86 ASHSEAVEAIKNAGNP--VVFIVQSLSSTPRVIP 117
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 57.7 bits (140), Expect = 5e-11
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 112 SSTLGIKVIGGK--LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
S LG ++GG G + ++K+ A L+G L GD+++ NG+ ++ Q
Sbjct: 17 PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQ 76
Query: 170 DVEDIIAESRQEPQVELIVSRRIQP 194
D D+ + V L V R++
Sbjct: 77 DAVDLFRNAGYA--VSLRVQHRLES 99
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 57.8 bits (140), Expect = 5e-11
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
S+ LG ++GG+ G + + G PADL G L GD+++ NG ++R + +
Sbjct: 25 STGLGFNIVGGE----DGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQA 80
Query: 172 EDIIAESRQEPQVELIVSRRIQP 194
+ + Q V ++ R +
Sbjct: 81 AAALKRAGQS--VTIVAQYRPEE 101
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 57.3 bits (139), Expect = 6e-11
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+ LG+ ++GG + II +V + A +G L AGDQ++E NG +R + +
Sbjct: 14 RTGLGLSIVGGS--DTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEA 71
Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTL 200
+++ ++ Q V L + R P + L
Sbjct: 72 INVLRQTPQR--VRLTLYRDEAPYKSTRL 98
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 57.4 bits (139), Expect = 6e-11
Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
A LG+ + + G I + +G +++ L GD + ++NG ++ G FQ
Sbjct: 12 AGKELGLSLSPNE------IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQV 65
Query: 171 VEDIIAESRQEPQVELIVSRRIQPKYAPT 199
+ + + V + V+R
Sbjct: 66 CYALFKGANGK--VSMEVTRPKPGSGGSG 92
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 57.9 bits (140), Expect = 8e-11
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
S+ LG + GGK G + I ++ KG+ ++ + GD++++ G +M+G + +
Sbjct: 39 SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEA 98
Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTLSKD 203
+II P V +++ R+ T + D
Sbjct: 99 WNIIKALPDGP-VTIVIRRKSLQSKETTAAGD 129
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 57.8 bits (140), Expect = 8e-11
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+ G +IGG + ++ V PA +G + GD ++ N + G + DV
Sbjct: 29 NMGFGFTIIGGD---EPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADV 85
Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPT 199
+ V L++ R + P
Sbjct: 86 VKLFQSVPIGQSVNLVLCRGYPLPFDPE 113
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 56.9 bits (138), Expect = 9e-11
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
LGI + G + + II + KG A+ G + GD+++ N S++GK +
Sbjct: 15 GGPLGITISGTE---EPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEA 71
Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPT 199
++ + + V L + ++ + A +
Sbjct: 72 IHLLQMAGET--VTLKIKKQTDAQPASS 97
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 57.4 bits (139), Expect = 1e-10
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
S+ LG ++GG+ G I + G PADL G L GDQ++ NG +R S +
Sbjct: 24 STGLGFNIVGGE----DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQA 79
Query: 172 EDIIAESRQEPQVELIVSRR 191
+ + Q V +I +
Sbjct: 80 AIALKNAGQT--VTIIAQYK 97
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 57.5 bits (139), Expect = 1e-10
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
S G V+GG + I+ + PA L+G + GD ++ N + G + V
Sbjct: 28 SRGFGFTVVGGD---EPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQV 84
Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPT 199
I V+L + R + P
Sbjct: 85 VKIFQSIPIGASVDLELCRGYPLPFDPD 112
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 57.0 bits (138), Expect = 1e-10
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 112 SSTLGIKVIGGKLLED-----GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGK 166
S +LG +IGG+ D + G + K+ PA EG L D++IE NGR +
Sbjct: 18 SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRA 77
Query: 167 SFQDVEDIIAESRQEPQVELIVSRRIQP 194
+ + +++ + + V RR
Sbjct: 78 THDQAVEAFKTAKEP--IVVQVLRRTSG 103
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 57.0 bits (138), Expect = 1e-10
Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+LG+ V GG + + V+ G +G + GD ++ +G + S +
Sbjct: 35 GESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEA 94
Query: 172 EDIIAESRQEPQVELIVSRRIQ 193
++ + + L +
Sbjct: 95 VALLKRTSSS--IVLKALEVKE 114
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 56.6 bits (137), Expect = 2e-10
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LGI + GG G I + A L GD+++ G S G + ++
Sbjct: 38 LGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNL 97
Query: 175 IAESRQEPQVELIVSRRIQP 194
+ + +E+ V
Sbjct: 98 LKNASGS--IEMQVVAGGDV 115
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 56.1 bits (136), Expect = 2e-10
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
LG ++GGK + I +V G AD G L GDQ++ NG S+ G+ +
Sbjct: 15 DEGLGFNIMGGK---EQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKA 71
Query: 172 EDIIAESRQEPQVELIVSRRIQP 194
+++ ++ V+L+V
Sbjct: 72 VELLKAAQGS--VKLVVRSGPSS 92
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 56.3 bits (136), Expect = 2e-10
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LG V II + +G A+ G + AGD ++ N R + S+ ++
Sbjct: 15 LGFLVKERV----SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEV 70
Query: 175 IAESRQEPQVELIVSRRIQPKYAPTLS 201
+ E +++ R + L
Sbjct: 71 LRGIASE--THVVLILRGPEGFTTHLE 95
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 55.8 bits (135), Expect = 2e-10
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 112 SSTLGIKVIGGK--LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
+S LG + GG G I K+ G A ++G L D V+ N +
Sbjct: 14 NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHS 73
Query: 170 DVEDIIAESRQEPQVELIVSRRIQP 194
+ + E+ V L+V RR P
Sbjct: 74 RAVEALKEAGPV--VRLVVRRRQPP 96
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 55.9 bits (135), Expect = 2e-10
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
LGI + GGK + +I ++ G PAD G L GD ++ NG ++R ++
Sbjct: 38 HEGLGISITGGK---EHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEA 94
Query: 172 EDIIAESRQEPQVELIV 188
I+++ R E +E V
Sbjct: 95 VTILSQQRGE--IEFEV 109
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 56.7 bits (137), Expect = 2e-10
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 112 SSTLGIKVIGGK--LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
+LGI+++G G ++ V GS A GH+ D+++ +G +++G +
Sbjct: 26 GQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANH 85
Query: 170 DVEDIIAESRQEPQVELIVSRRIQPKYAPTLS 201
DV +++ + Q V L + RR L
Sbjct: 86 DVVEVLRNAGQV--VHLTLVRRKTSSSTSPLE 115
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 55.9 bits (135), Expect = 2e-10
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LG+ ++ A+I + G PA+ G L GD++ NG S+ G +
Sbjct: 23 LGVALVESGW-GSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAA 81
Query: 175 IAESRQEPQVELIVSRR 191
+ E++ + V L +
Sbjct: 82 VRETKSQTSVTLSIVHC 98
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 55.8 bits (135), Expect = 3e-10
Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSM-RGKSFQD 170
S LG V+G + G G ++++++GS A +G L DQ++ NG+++ + + Q
Sbjct: 31 SGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQ 90
Query: 171 VEDIIAESRQEPQVELIVSRRIQPKY 196
I+ +++ V+L+++R P+Y
Sbjct: 91 AISILQKAKDT--VQLVIARGSLPQY 114
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 55.8 bits (135), Expect = 3e-10
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
S LG+ +I G G G I+ + GSPA +G L GD+++E NG S+ G +
Sbjct: 18 PSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRA 77
Query: 172 EDIIAESRQEPQVELIVSRR 191
D+I + ++ +V++
Sbjct: 78 VDLIRHGGK--KMRFLVAKS 95
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 55.9 bits (135), Expect = 3e-10
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 112 SSTLGIKVIGGK--LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
S LG ++GG G + ++K+ A L+G L GD+++ NG+ ++ Q
Sbjct: 27 PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQ 86
Query: 170 DVEDIIAESRQEPQVELIVSRRIQPKYAP 198
D D+ + V L V R+Q + P
Sbjct: 87 DAVDLFRNAGYA--VSLRVQHRLQVQNGP 113
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 55.5 bits (134), Expect = 3e-10
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
++TLGI + GG I +++G A G L G ++E NG ++RGK ++
Sbjct: 16 AATLGIAIEGGA--NTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREA 73
Query: 172 EDIIAESRQE---PQVELIVSRR 191
IIAE+ + ++ +V+
Sbjct: 74 ARIIAEAFKTKDRDYIDFLVTEF 96
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 55.9 bits (135), Expect = 4e-10
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
A + +GI + GG I +V +PA L+G + AGD++ NGRS++GK+
Sbjct: 28 DAQNLIGISIGGGA---QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKV 84
Query: 170 DVEDIIAESRQEPQVELIVSR-RIQPKYAPTLSK 202
+V +I E + E V + ++ + PK L
Sbjct: 85 EVAKMIQEVKGE--VTIHYNKLQADPKQLEVLFN 116
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 55.0 bits (133), Expect = 4e-10
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 115 LGIKVIGGK---LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
GI ++ G+ T G I+ + SPA L G L GD+++ NG+ +R + Q V
Sbjct: 19 FGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAV 78
Query: 172 EDIIAESRQEPQVELIVSR 190
D+I E+ + +EL +
Sbjct: 79 IDLIKEADFK--IELEIQT 95
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 55.5 bits (134), Expect = 4e-10
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+ LG+K++GG +G I +V G +G L GDQ++ N SM G SF++
Sbjct: 24 ETGLGLKILGGINRNEGP-LVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEA 82
Query: 172 EDII--AESRQEPQVELIVSRRIQPK 195
+ II A+ R E E+ R P
Sbjct: 83 KSIITRAKLRSESPWEIAFIRS-GPS 107
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 55.5 bits (134), Expect = 4e-10
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
A + +GI + GG I +V +PA L+G + AGD++ NGRS++GK+
Sbjct: 33 DAQNLIGISIGGGA---QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKV 89
Query: 170 DVEDIIAESRQEPQVELIVSRRIQP 194
+V +I E + E V + ++Q
Sbjct: 90 EVAKMIQEVKGE--VTIHY-NKLQY 111
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 55.9 bits (135), Expect = 4e-10
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+ LG+ + G K + + + PA +G + GD+++E N + + G+S Q+
Sbjct: 35 KNGLGLSLAGNK--DRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNA 92
Query: 172 EDIIAESRQEPQVELIVSRRIQP 194
II + + V+L+ R
Sbjct: 93 SAIIKTAPSK--VKLVFIRNEDA 113
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 55.5 bits (134), Expect = 4e-10
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 112 SSTLGIKVIGGKLLED---GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
S LGI +IG D G ++ V +G A +G + D ++E +G S+ G +
Sbjct: 14 SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQ 73
Query: 169 QDVEDIIAESRQEPQVELIVSRRIQPKYAPTLSK 202
++ ++ V ++ R + +
Sbjct: 74 SFAASVLRNTKGR--VRFMIGRERPGEQSEVAQL 105
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 55.0 bits (133), Expect = 5e-10
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAI---IEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
LGI +IG + D + ++ V +G A +G + DQ++E +G S+ G +
Sbjct: 19 EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQ 78
Query: 169 QDVEDIIAESRQEPQVELIVSRR 191
++ ++ V ++ R
Sbjct: 79 NFAATVLRNTKGN--VRFVIGRE 99
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 55.2 bits (133), Expect = 6e-10
Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 16/99 (16%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
++G+++ GG + G + V + SPA EG L GDQ++ N ++
Sbjct: 38 GDSVGLRLAGGNDV-----GIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEA 91
Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRD 210
+ + + +V ++ ++ KDVY R+ +
Sbjct: 92 VLFLLDLPKGEEVTILAQKK----------KDVYRRIVE 120
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 59.1 bits (142), Expect = 6e-10
Identities = 25/150 (16%), Positives = 42/150 (28%), Gaps = 11/150 (7%)
Query: 81 AHPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGK--LLEDGTRGAIIEKVK 138
+ +G+ + L + S LG + GG I K+
Sbjct: 45 LEAPGYVNGTEGEMEYEEITLERGN-------SGLGFSIAGGTDNPHIGDDPSIFITKII 97
Query: 139 KGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPKYAP 198
G A +G L D ++ N +R + + + E+ V L V RR P
Sbjct: 98 PGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSI--VRLYVMRRKPPAEKV 155
Query: 199 TLSKDVYERVRDKPSVLVTSPGSPDIHSGR 228
K + S+
Sbjct: 156 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNS 185
Score = 54.9 bits (131), Expect = 2e-08
Identities = 27/134 (20%), Positives = 45/134 (33%), Gaps = 9/134 (6%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LG ++GG+ G I + G PADL G L GDQ++ NG +R S +
Sbjct: 320 LGFNIVGGE----DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIA 375
Query: 175 IAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRDKPSVLVTSPGSPDIHSGRPGRPVP 234
+ + Q V +I + + S+ G+ + S
Sbjct: 376 LKNAGQT--VTIIAQYKPEEYSRFEAKIHDLREQLMNSSL---GSGTASLRSNPKRGFYI 430
Query: 235 SHHTDHHPITNSSV 248
D+ +
Sbjct: 431 RALFDYDKTKDCGF 444
Score = 42.6 bits (99), Expect = 1e-04
Identities = 18/150 (12%), Positives = 38/150 (25%), Gaps = 2/150 (1%)
Query: 98 HMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIE 157
+ + I G G + K+ +G A +G L GD+++
Sbjct: 152 AEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILA 211
Query: 158 WNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRDKPSVLVT 217
N + +D + + V L V++ + + + +
Sbjct: 212 VNSVGLEDVMHEDAVAALKNT--YDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEI 269
Query: 218 SPGSPDIHSGRPGRPVPSHHTDHHPITNSS 247
S S S +
Sbjct: 270 SHSSYLGTDYPTAMTPTSPRRYSPVAKDLL 299
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 55.1 bits (133), Expect = 6e-10
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
S LG ++GGK T G ++ + G AD +G L GD +++ G +++G + + V
Sbjct: 25 GSGLGFGIVGGK-----TSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQV 79
Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPT 199
++ V ++V+R + T
Sbjct: 80 AQVLRNCGNS--VRMLVARDPAGDISVT 105
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 54.3 bits (131), Expect = 9e-10
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 112 SSTLGIKVIGGK---LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
LG + GGK G G + ++ +G A G L GD+V+ NG +
Sbjct: 17 ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARH 76
Query: 169 QDVEDIIAESRQEPQVELIVSRRIQP 194
++ + + L++ R
Sbjct: 77 DHAVSLLTAASPT--IALLLEREAGS 100
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 54.4 bits (131), Expect = 1e-09
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 115 LGIKVIGGK---LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
GI V GG+ E+G +I V G PAD G L D+V+ NG M
Sbjct: 28 FGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHSFA 85
Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPT 199
+ +S + ++V R + + AP
Sbjct: 86 VQQLRKSGKI--AAIVVKRPRKVQVAPL 111
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 54.3 bits (131), Expect = 1e-09
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
S LG+ ++GGK + +I +V + A +G L AGDQ++E NG +R S ++
Sbjct: 27 RSGLGLSIVGGK--DTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEA 84
Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTLS 201
+ ++ Q+ V L+V R
Sbjct: 85 ITALRQTPQK--VRLVVYRDEAHYRDEESG 112
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 53.5 bits (129), Expect = 1e-09
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
++++ + A +G+L GD +++ NG S D +I +SR +++L+
Sbjct: 19 LGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSR--GKLQLV 76
Query: 188 VSRRIQPKY 196
V R ++ +
Sbjct: 77 VLRDLEHHH 85
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 53.9 bits (130), Expect = 1e-09
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 112 SSTLGIKVIGGKLLE------DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRG 165
S +LGI ++GG+ + + RG I+ V + SPA G L GD+++E +G +R
Sbjct: 15 SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRD 74
Query: 166 KSFQDVEDIIAESRQEPQVELIVSRRIQPK 195
S + + I ++ V +V I +
Sbjct: 75 ASHEQAVEAIRKAGNP--VVFMVQSIISTR 102
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 56.1 bits (135), Expect = 1e-09
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
A LG+ + + G I + +G +++ L GD + ++NG ++ G FQ
Sbjct: 122 KAGKELGLSLSPNE------IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQ 175
Query: 170 DVEDIIAESRQEPQVELIVSRR 191
+ + + V + V+R
Sbjct: 176 VCYALFKGANGK--VSMEVTRP 195
Score = 47.2 bits (112), Expect = 1e-06
Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 12/128 (9%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+G+ V GGK G +I V + L D + + NG + S +
Sbjct: 28 KKPMGVIVCGGKNNHVT-TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTL 86
Query: 172 EDI-IAESRQEPQVELIVSRRIQPKYAP---TLSKDVYER-----VRDKPSVLVTS--PG 220
+ + + E V L V R P+ L K + ++ + G
Sbjct: 87 KVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQG 146
Query: 221 SPDIHSGR 228
+
Sbjct: 147 QYPEIDSK 154
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 54.0 bits (130), Expect = 1e-09
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 112 SSTLGIKVIGGKLLEDGTRGA----IIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKS 167
+ G +I + I ++ GSPAD L GD+++ NG+S+
Sbjct: 21 NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMP 80
Query: 168 FQDVEDIIAESRQEPQVELIVSRR 191
D+ +I ++ V L + +
Sbjct: 81 HADIVKLIKDAGLS--VTLRIIPQ 102
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 53.5 bits (129), Expect = 1e-09
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 109 PSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
S + LG V GG E G G + KV++GS A+ G L GD++ E NG S+ +
Sbjct: 18 KSPAGRLGFSVRGGS--EHGL-GIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTM 73
Query: 169 QDVEDIIAESRQEPQVELIVSRRIQP 194
++ ++ ++V R
Sbjct: 74 GSAVKVL---TSSSRLHMMVRRMGSG 96
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 53.1 bits (128), Expect = 1e-09
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+ LGI + GG+ + +I K+ KG AD L GD ++ NG + + +
Sbjct: 15 AGGLGISIKGGR---ENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEA 71
Query: 172 EDIIAESRQEPQVELIVSRR 191
+ ++ +E V L V
Sbjct: 72 VQALKKTGKE--VVLEVKYM 89
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 53.9 bits (130), Expect = 1e-09
Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+ G + GG+ + + ++ + PA+ G + GD+++E NG + +
Sbjct: 34 AKGFGFSLRGGR---EYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRA 90
Query: 172 EDIIAESRQEPQVELIVSRR 191
++I + V L + R
Sbjct: 91 IELIKNGGRR--VRLFLKRG 108
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 53.9 bits (130), Expect = 2e-09
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 112 SSTLGIKVIGGK---LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
+ LGI + GGK + G I +V + PA G + GD+++E NG +++G
Sbjct: 25 TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEH 83
Query: 169 QDVEDIIAESRQEPQVELIVSRRIQP 194
+ + + + V++ V R P
Sbjct: 84 HEAVEALRGAGTA--VQMRVWRESGP 107
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 53.6 bits (129), Expect = 2e-09
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LGI ++G E G G I + KG +G + GD +++ N + S D +
Sbjct: 19 LGISIVGQSN-ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRV 77
Query: 175 IAESRQEPQ-VELIVSRR 191
+ + +P + L V++
Sbjct: 78 LRDIVHKPGPIVLTVAKS 95
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 56.3 bits (135), Expect = 2e-09
Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 9/142 (6%)
Query: 110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
+ + LGI + GG+ + +I K+ KG AD L GD ++ NG + +
Sbjct: 86 ADAGGLGISIKGGR---ENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHD 142
Query: 170 DVEDIIAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRDKPSVLVTSPGSPDIHSGRP 229
+ + ++ +E +E+ + + P + + S L P SP
Sbjct: 143 EAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVGWDSPPASPLQRQPSSP------G 196
Query: 230 GRPVPSHHTDHHPITNSSVGGR 251
+P H + + V R
Sbjct: 197 PQPRNLSEAKHVSLKMAYVSRR 218
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 53.6 bits (129), Expect = 2e-09
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 112 SSTLGIKVIGGKLLEDGT------RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRG 165
S +LGI ++GG+ + RG I+ V + SPA G L GD+++E +G +R
Sbjct: 35 SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRD 94
Query: 166 KSFQDVEDIIAESRQEPQVELIVSRRIQPK 195
S + + I ++ V +V I +
Sbjct: 95 ASHEQAVEAIRKAGNP--VVFMVQSIISTR 122
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 53.5 bits (129), Expect = 2e-09
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 115 LGIKVIGGKLLEDGTR--GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVE 172
LGI + G + G ++ + GS A L+G + D+++ + +++G + DV
Sbjct: 27 LGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVV 86
Query: 173 DIIAESRQEPQVELIVSRRI 192
+++ + V L++ RR+
Sbjct: 87 EVLRNAGNP--VRLLLIRRL 104
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 52.7 bits (127), Expect = 2e-09
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
G + G K G G I V+ GSPA+ G LLAGD+++E NG ++ ++ Q V
Sbjct: 16 YGFHLHGEK----GKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSR 70
Query: 175 IAESRQEPQVELIVSRRIQPKY 196
I + V L+V +
Sbjct: 71 IRAALNA--VRLLVVDPETDEQ 90
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 53.5 bits (129), Expect = 2e-09
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 112 SSTLGIKVIGGK--LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
LG + GG G + K+ G A +G L GD+++ N S+ + +
Sbjct: 34 PKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHE 93
Query: 170 DVEDIIAESRQEPQVELIVSRR 191
+ I+ + + V L V +
Sbjct: 94 EAVAILKNTSEV--VYLKVGKP 113
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 52.7 bits (127), Expect = 3e-09
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 112 SSTLGIKVIGGK---LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
+ LGI + GGK + G I +V + PA G + GD+++E NG +++G
Sbjct: 13 TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEH 71
Query: 169 QDVEDIIAESRQEPQVELIVSRRIQP 194
+ + + + V++ V R +
Sbjct: 72 HEAVEALRGAGTA--VQMRVWRERET 95
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 52.7 bits (127), Expect = 3e-09
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 112 SSTLGIKVIGGK--LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
LG + GG G + K+ +G A +G L GD+++ N S+ + +
Sbjct: 13 PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHE 72
Query: 170 DVEDIIAESRQEPQVELIVSRR 191
+ + + V L V++
Sbjct: 73 EAVTALKNTSDF--VYLKVAKP 92
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 53.1 bits (128), Expect = 3e-09
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 112 SSTLGIKVIGGKLLEDGTR------GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRG 165
LGI + GG G G I KV A +G L G +++E N +S+ G
Sbjct: 20 GERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLG 79
Query: 166 KSFQDVEDIIAESRQEPQVELIVSRRIQP 194
+ + ++ + ++V +
Sbjct: 80 LTHGEAVQLLRSVGDT--LTVLVCDGFES 106
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 52.9 bits (127), Expect = 3e-09
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 108 YPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADL-EGHLLAGDQVIEWNGRSMRGK 166
P + G V GG D I+ +V G+PADL L GDQV+ NGR +
Sbjct: 24 KPDENGRFGFNVKGGY---DQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEH 80
Query: 167 SFQDVEDIIAESRQEPQVELIVSRR 191
+ V I S + EL++ R
Sbjct: 81 THDQVVLFIKASCERHSGELMLLVR 105
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 52.4 bits (126), Expect = 4e-09
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 115 LGIKVIGGK---LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
GI + GG+ + G +I V KG PA+ G L D+V NG SM
Sbjct: 21 FGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQENDRVAMVNGVSMDNVEHAFA 78
Query: 172 EDIIAESRQEPQVELIVSRR 191
+ +S + ++ + R+
Sbjct: 79 VQQLRKSGKN--AKITIRRK 96
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 53.2 bits (128), Expect = 4e-09
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSM-RGKSFQDVED 173
LG V+ + G ++ V+ GS AD + L DQ++ N + + S Q
Sbjct: 39 LGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIA 98
Query: 174 IIAESRQEPQVELIVSRRIQPKYAPTLS 201
++ ++ + LIV+R + T
Sbjct: 99 LLQQTTGS--LRLIVAREPVHTKSSTSG 124
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 52.3 bits (126), Expect = 5e-09
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+ G+ + GG+ + G + + K PA G L GD V+ NG S +G +
Sbjct: 21 YAGFGLTLGGGRDVA-GDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQA 79
Query: 172 EDIIAESRQEPQVELIVSRRIQP 194
+ I + + L++ R +
Sbjct: 80 VERIRAGGPQ--LHLVIRRPLSG 100
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 52.6 bits (126), Expect = 5e-09
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 108 YPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADL-EGHLLAGDQVIEWNGRSMRGK 166
P + G V GG D I+ +V G+PADL L GDQV+ NGR +
Sbjct: 22 KPDENGRFGFNVKGGY---DQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEH 78
Query: 167 SFQDVEDIIAESRQEP--QVELIVSRRIQPKYA 197
+ V I S + ++ L+V
Sbjct: 79 THDQVVLFIKASCERHSGELMLLVRPNAVYDVV 111
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 51.9 bits (125), Expect = 5e-09
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+ G + GG+ + + ++ + PA G + GDQ+IE NG S R +
Sbjct: 21 AKGFGFSIRGGR---EYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARA 77
Query: 172 EDIIAESRQEPQVELIVSRRIQ 193
++I + V L++ R
Sbjct: 78 IELIKSGGRR--VRLLLKRGTG 97
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 51.6 bits (124), Expect = 5e-09
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LG + + T I+ ++ +G AD G + GD++ E NG + K +++ I
Sbjct: 17 LGATIKKDE----QTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQI 72
Query: 175 IAESRQEPQVELIVSRRIQP 194
+A+S+ ++I + +
Sbjct: 73 LAQSQGAITFKIIPGSKEET 92
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 51.6 bits (124), Expect = 6e-09
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
++++ + S A +G++ GD V++ NG S D + +I S+ +++++
Sbjct: 21 LASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKG--KLKMV 78
Query: 188 VSRR 191
V R
Sbjct: 79 VQRD 82
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 52.0 bits (125), Expect = 6e-09
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 112 SSTLGIKVI-----GGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGK 166
++LGI V GG G ++ V A+ +G + GD+V+ NG S+ G
Sbjct: 19 DNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGA 78
Query: 167 SFQDVEDIIAESRQEPQVELIVSRRIQP 194
+ + + + + Q V L++ + P
Sbjct: 79 THKQAVETLRNTGQV--VHLLLEKGQSP 104
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 52.0 bits (125), Expect = 7e-09
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
+ LG + GGK G I KV S A G L GDQV+ N +
Sbjct: 24 PPGAQLGFNIRGGK---ASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHS 79
Query: 170 DVEDIIAESRQEPQVELIVSRRIQP 194
+I+ + ++ + V P
Sbjct: 80 KAVEIL---KTAREISMRVRFFSGP 101
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 52.0 bits (125), Expect = 7e-09
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAI-IEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
LG ++ + D TR I I + A+ G LL GD+++ N + S +
Sbjct: 25 CKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAE 84
Query: 171 VEDIIAESRQEPQVELIVSR 190
+I+ V L +
Sbjct: 85 AVEILKAVPPGL-VHLGICS 103
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 51.6 bits (124), Expect = 7e-09
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
G ++ GG D + +I ++ GS A L GD ++ +G + D +D
Sbjct: 17 WGFRLSGGI---DFNQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDR 72
Query: 175 IAESRQEPQVELIVSRRIQPKYAPTLS 201
I + Q+ L + R ++P +S
Sbjct: 73 IKAASY--QLCLKIDRAETRLWSPQVS 97
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 53.4 bits (128), Expect = 8e-09
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LG+ V GG E G G I + KG AD G L GD+++ NG S+ + ++V ++
Sbjct: 98 LGLSVRGGL--EFGC-GLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINL 153
Query: 175 IAESRQEPQVELIVSR-RIQPKYAPTLSKDVYERV 208
I R E V + V + P + ++ V
Sbjct: 154 I---RTEKTVSIKVRHIGLIPVKSSPDEPLTWQYV 185
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 50.8 bits (122), Expect = 9e-09
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
+GI + I+ ++ G +G L GD++ E NG S+ ++ + ++ +
Sbjct: 15 MGITLKMN-----ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKM 69
Query: 175 IAESRQEPQVELIVSRR 191
+ E R +++ S R
Sbjct: 70 LREMRGSITFKIVPSYR 86
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 50.7 bits (122), Expect = 9e-09
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190
++++ + S A +G++ GD V++ NG S D + +I S+ +++++V R
Sbjct: 22 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK--GKLKMVVQR 79
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 51.8 bits (124), Expect = 1e-08
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
Query: 98 HMILRKSGDRYPSASSTLGIKVIGGK------LLEDGTRGAIIEKVKKGSPADLEGHLLA 151
+ L K G P LG + G + G I ++ G A G L
Sbjct: 32 RVRLCKYGTEKP-----LGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAV 86
Query: 152 GDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQP 194
D+V+E NG + GKS V D++ + + + + V Q
Sbjct: 87 NDEVLEVNGIEVSGKSLDQVTDMMIANSRN--LIITVRPANQR 127
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 50.8 bits (122), Expect = 1e-08
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 112 SSTLGIKVIGGK--LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
LG + GG G I K+ +G A +G L GD+++ N +++ +
Sbjct: 13 PKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHE 72
Query: 170 DVEDIIAESRQEPQVELIVSRR 191
+ + + V L V++
Sbjct: 73 EAVASLKNTSDM--VYLKVAKP 92
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 51.4 bits (123), Expect = 1e-08
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 6/83 (7%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+ LG+ VI I + A +G L GD +I ++ G + ++
Sbjct: 37 NLGLGLVVIQNG------PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREF 90
Query: 172 EDIIAESRQEPQVELIVSRRIQP 194
++ +++ R
Sbjct: 91 LKLLQNITIGTVLQIKAYRGFLE 113
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 51.3 bits (123), Expect = 1e-08
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 111 ASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
S LGI ++ G+ G + KV GS A G L GDQ++E+NG ++R + Q
Sbjct: 28 GSEPLGISIVSGE-----KGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQ 81
Query: 171 VEDIIAESRQEPQVELIVSRR 191
II + + ++
Sbjct: 82 ARLIIGQQCDT--ITILAQYN 100
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 50.4 bits (121), Expect = 2e-08
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
G ++ GGK D I +K G A + GD V+ +G + +G + + ++
Sbjct: 15 WGFRLQGGK---DFNMPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNK 70
Query: 175 IAESRQEPQVELIVSRR 191
I + + + R
Sbjct: 71 IKGCTG--SLNMTLQRE 85
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 50.1 bits (120), Expect = 2e-08
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+LG+ + +G A I+++K G D + GD + NG ++ G DV
Sbjct: 15 EDSLGLTITD-----NGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDV 69
Query: 172 EDIIAESRQEPQVELIV 188
+ E ++E + +
Sbjct: 70 AKKLKELKKEELFTMKL 86
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 50.4 bits (121), Expect = 2e-08
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 109 PSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
A LG + GG + G + V+ GS A+ EG L GDQ++ N +S+ +
Sbjct: 17 AKAHEGLGFSIRGGS---EHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTH 72
Query: 169 QDVEDIIAESRQEPQVELIVSRR 191
+ + + ++ L V
Sbjct: 73 AEAVKAL---KGSKKLVLSVYSA 92
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 49.5 bits (119), Expect = 2e-08
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
G ++ V +GSPAD G L AGDQ++ N +++ S +DV +I + + ++
Sbjct: 21 GQAPCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCSGV--LHMV 77
Query: 188 VSR 190
++
Sbjct: 78 IAE 80
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 50.6 bits (121), Expect = 3e-08
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
LG+ V ED G I ++ S A +G + GD++I+ NG ++ + + +
Sbjct: 34 LGLTVCYRTDDEDDI-GIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNRE--EAVAL 90
Query: 175 IAESRQEPQVELIVSRRIQP 194
+ + L+++R
Sbjct: 91 LTSEENKN-FSLLIARPELQ 109
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 51.4 bits (123), Expect = 3e-08
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
+G+++ G ++ V+ SPA L G L GDQV++ NG + G S +
Sbjct: 18 IGLRLKSID------NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKV 70
Query: 175 IAESRQEPQVELIVSRRIQPKYAPTLSKDVYERV 208
+ ++ E ++ + + R + T+ KD V
Sbjct: 71 LKQAFGE-KITMTI-RDRPFERTITMHKDSTGHV 102
Score = 36.3 bits (84), Expect = 0.004
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
Query: 107 RYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGK 166
P + K G + G I + K S A G LL + E NG+++ G
Sbjct: 85 DRPFERTITMHKDSTGHVGFIFKNGKIT-SIVKDSSAARNG-LLTEHNICEINGQNVIGL 142
Query: 167 SFQDVEDIIAESRQEPQVELIVSRRIQPKY 196
+ DI++ S V+ I P +
Sbjct: 143 KDSQIADILSTSGTV------VTITIMPAF 166
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 50.1 bits (120), Expect = 3e-08
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
+ LG V II ++ KG A+ G L GD+V+E NG +RGK
Sbjct: 34 ARDIPLGATVRNEM------DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVN 87
Query: 170 DVEDIIAESRQEPQVELIVSRRIQP 194
+V D++++ + ++ P
Sbjct: 88 EVFDLLSDMHGT--LTFVLIPSSGP 110
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 49.3 bits (118), Expect = 3e-08
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
G +++GGK D + I +V GS A L L GD + +G + + + ++
Sbjct: 15 WGFRLVGGK---DFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNR 70
Query: 175 IAESRQEPQVELIVSRR 191
I + L V+R
Sbjct: 71 IKGCTD--NLTLTVARS 85
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 49.6 bits (119), Expect = 3e-08
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
G ++ GG+ D I+ KV + A+ L GD ++ NG+S + +
Sbjct: 18 WGFRISGGR---DFHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSK 73
Query: 175 IAESRQEPQVELIVSRRIQP 194
I +S + L + R P
Sbjct: 74 IRQSAS--PLRLQLDRSSGP 91
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 49.2 bits (118), Expect = 3e-08
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVS 189
+ I + K S A G LL + E NG+++ G + DI++ S V+
Sbjct: 23 KNGKITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTV------VT 75
Query: 190 RRIQPKY 196
I P +
Sbjct: 76 ITIMPAF 82
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 51.5 bits (123), Expect = 4e-08
Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 17/180 (9%)
Query: 14 SQQETTPYRIPSSDSGVDMRHSTARSRDEELRYYRGELEGSTGNEGSGSIGGKEKQAILD 73
+++ P P S V++ + R ST S E +
Sbjct: 4 DEEDGEPPYEPES-GCVEIPGLSEEEDPAPSRKIHF----STAPIQVFSTYSNEDYDRRN 58
Query: 74 ERIKKFLAHPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLED---GTR 130
E + A + + + L K S LGI +IG D
Sbjct: 59 EDVDPMAASAEYELEKRVERLELFPVELEKD-------SEGLGISIIGMGAGADMGLEKL 111
Query: 131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190
G ++ V +G A +G + D ++E +G S+ G + ++ ++ V ++ R
Sbjct: 112 GIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGR--VRFMIGR 169
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 53.3 bits (127), Expect = 4e-08
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
++G+++ GG G + V + SPA EG L GDQ++ N ++
Sbjct: 18 GDSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEA 71
Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTLS 201
+ + + +V ++ ++ S
Sbjct: 72 VLFLLDLPKGEEVTILAQKKKDVYRRIVES 101
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 53.1 bits (126), Expect = 4e-08
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Query: 114 TLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED 173
LG+ V+ I+ + G PA G L GDQ++ NG S+ G +
Sbjct: 217 ILGVVVVESGW-GSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQG 275
Query: 174 IIAESRQEPQVELIVSRRIQPKYAPTLSKDVYERV 208
II + + QV+L + D+ ++
Sbjct: 276 IIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQL 310
Score = 43.0 bits (100), Expect = 7e-05
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIV- 188
+ II + +G A+ G + G ++IE NG+S+ + + + ++ S E + +
Sbjct: 315 QNGIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSVGE--IHMKTM 371
Query: 189 ----SRRIQPKYAPTL 200
R + + P
Sbjct: 372 PAAMFRLLTGQETPLY 387
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 49.3 bits (118), Expect = 4e-08
Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
+GI + E + ++ G +G L GD+++E NG ++ S ++
Sbjct: 26 MGICLKLN---EKQ--SCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKA 80
Query: 175 IAESRQEPQVELI 187
+ E++ +++I
Sbjct: 81 MKETKGMISLKVI 93
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 49.3 bits (118), Expect = 5e-08
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
+ + V G A G L GDQ+++ N S++ DI+ E+ + +
Sbjct: 29 ESLPLTVVAVTAGGSAH--GKLFPGDQILQMNNEPAEDLSWERAVDILREAEDS--LSIT 84
Query: 188 VSRRIQ 193
V R
Sbjct: 85 VVRCTS 90
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 48.8 bits (117), Expect = 5e-08
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
G ++ GGK D I ++ G A G + GD V+ +G + + + ++
Sbjct: 15 WGFRLQGGK---DFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNK 70
Query: 175 IAESRQEPQVELIVSRRI 192
I + ++ L +SR I
Sbjct: 71 IRACGE--RLSLGLSRAI 86
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 49.4 bits (118), Expect = 5e-08
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 9/86 (10%)
Query: 112 SSTLGIKVIGGK-----LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGK 166
LG + GG G + +V+ PA L GD++I+ NG S
Sbjct: 20 DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINI 77
Query: 167 SFQDVEDIIAESRQEPQVELIVSRRI 192
++ + VELI+ R +
Sbjct: 78 EHGQAVSLLKTFQNT--VELIIVREV 101
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 49.3 bits (118), Expect = 6e-08
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
G ++ GGK D I +K G A + GD V+ +G S +G + + ++
Sbjct: 17 WGFRLQGGK---DFNMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNK 72
Query: 175 IAESRQEPQVELIVSRRIQPKYAPTLS 201
I + + + R + +S
Sbjct: 73 IKACTG--SLNMTLQRASAAAKSEPVS 97
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 48.4 bits (116), Expect = 6e-08
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
G ++ GGK D I ++ GS A L GD V+ +G + + + ++
Sbjct: 13 WGFRLQGGK---DFNMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNK 68
Query: 175 IAESRQEPQVELIVSRR 191
I + + L + +
Sbjct: 69 IKSASY--NLSLTLQKS 83
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 48.9 bits (117), Expect = 7e-08
Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+ G + + G +G + + A G +LA D +IE NG ++ S ++V
Sbjct: 18 GGSYGFSLKTVQ----GKKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEV 72
Query: 172 EDIIAESRQEPQVELIVSRRIQPKY 196
+ + +S +V ++ + K
Sbjct: 73 VEKVKKSGS--RVMFLLVDKETDKR 95
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 48.4 bits (116), Expect = 7e-08
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
G ++ GG+ D ++ KV + A L GD ++ NG S G + +
Sbjct: 14 WGFRITGGR---DFHTPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSK 69
Query: 175 IAESRQEPQVELIVSR 190
I +S + L + R
Sbjct: 70 IRQSPS--PLRLQLDR 83
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 50.1 bits (120), Expect = 8e-08
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 21/96 (21%)
Query: 220 GSPDIHSGRPGRPVPSHHTDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDS 279
GSP I SG G + S P G++Q D +L+V +I
Sbjct: 1 GSPGI-SGGGGGILDSMVEKEEP-KEEEKLGKLQYSLDYDFQNNQLLVGIIQ-------- 50
Query: 280 GTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
AA L G PY K++LLPD+
Sbjct: 51 -----------AAELPALDMGGTSDPYVKVFLLPDK 75
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 49.0 bits (117), Expect = 8e-08
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 114 TLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVED 173
G + K T G +I +++GSPA+ G LL GD+V+ NG + + V +
Sbjct: 14 NYGFFLRIEK----DTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVE 68
Query: 174 IIAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRDKP 212
++ +S V L+V + A D+ E ++
Sbjct: 69 LVRKSGNS--VTLLVLDGDSYEKAVKNQVDLKELDQEAK 105
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 48.6 bits (116), Expect = 9e-08
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 9/86 (10%)
Query: 112 SSTLGIKVIGGK-----LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGK 166
LG + GG G + +V+ PA L GD++I+ NG S
Sbjct: 12 DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINI 69
Query: 167 SFQDVEDIIAESRQEPQVELIVSRRI 192
++ + VELI+ R +
Sbjct: 70 EHGQAVSLLKTFQNT--VELIIVREV 93
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 48.1 bits (115), Expect = 1e-07
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 119 VIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAES 178
++ + DG G + +V G PA G + AGD+++ G S+ G ++ I
Sbjct: 19 LLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQ 77
Query: 179 RQEPQVELIVSRR 191
V L V
Sbjct: 78 --GSCVSLTVVDP 88
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 49.0 bits (117), Expect = 1e-07
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+LG+ + GG + G I V GS A+ G L GDQ++E NGRS +
Sbjct: 31 GRSLGLTIRGGA---EYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEA 86
Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTLSKDV 204
++ + + L V + +A T +
Sbjct: 87 VRLL---KSSRHLILTVKDVGRLPHARTTVDET 116
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 48.0 bits (115), Expect = 1e-07
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
G +++GG+ D + I +V GS A L L GD + NG S + + ++
Sbjct: 20 WGFRLVGGR---DFSAPLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNR 75
Query: 175 IAESRQEPQVELIVSR 190
I + L VS
Sbjct: 76 IKGCHD--HLTLSVSS 89
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 48.0 bits (115), Expect = 1e-07
Identities = 16/64 (25%), Positives = 34/64 (53%)
Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
+ G ++VK+ + L GD ++E N ++++ + V D++ ES + +V L+
Sbjct: 22 DSPGGGGQRVKQIVDSPRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLL 81
Query: 188 VSRR 191
V R+
Sbjct: 82 VQRQ 85
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 48.0 bits (115), Expect = 1e-07
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
G + + G G+ I++V+KG PADL G L D +IE NG ++ + ++ V D
Sbjct: 16 YGFHLNAIR----GLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDR 70
Query: 175 IAESRQEPQVELIV 188
I S V L+V
Sbjct: 71 IQSS--GKNVTLLV 82
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 48.6 bits (116), Expect = 1e-07
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
G + K T G +I +++GSPA+ G LL GD+V+ NG + + V
Sbjct: 24 GQNYGFFLRIEK----DTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQV 78
Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTLSKDVYE 206
+++ +S V L+V + A D+ E
Sbjct: 79 VELVRKSGNS--VTLLVLDGDSYEKAVKNQVDLKE 111
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 48.1 bits (115), Expect = 1e-07
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
G + K G I V GSPA G L A D++IE NG+++ G +V
Sbjct: 17 YGFNLHSDK----SRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVAS 71
Query: 175 IAESRQEPQVELIVSRR 191
I E L+V
Sbjct: 72 IKAREDE--ARLLVVGP 86
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 49.2 bits (118), Expect = 1e-07
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 19/72 (26%)
Query: 244 TNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPR 303
++ S GG++ +K + D +L+VT++ A L R +G+PR
Sbjct: 2 SSGSSGGQLSIKLWFDKVGHQLIVTILG-------------------AKDLPSREDGRPR 42
Query: 304 CPYAKIYLLPDR 315
PY KIY LPDR
Sbjct: 43 NPYVKIYFLPDR 54
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 48.9 bits (117), Expect = 2e-07
Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 19/86 (22%)
Query: 230 GRPVPSHHTDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLM 289
G P + G++Q D +L+V +I
Sbjct: 1 GSPGIGGGGGGILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQ------------------ 42
Query: 290 CAASLVPRSNGQPRCPYAKIYLLPDR 315
AA L G PY K++LLPD+
Sbjct: 43 -AAELPALDMGGTSDPYVKVFLLPDK 67
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 47.7 bits (114), Expect = 2e-07
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
G + K G I V SPA+ G L A D+++E NG M GK DV
Sbjct: 22 YGFNLHSDK----SKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSA 76
Query: 175 IAESRQEPQVELIVSRRIQPKY 196
I E +L+V R ++
Sbjct: 77 IRAGGDE--TKLLVVDRETDEF 96
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 47.3 bits (113), Expect = 2e-07
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
G R +++ V+ G A G + GD++I+ NG + S +V +I + V L
Sbjct: 27 GDRIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLI---KSGAYVALT 82
Query: 188 VSRR 191
+
Sbjct: 83 LLGS 86
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 47.3 bits (113), Expect = 2e-07
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
G + G +G II+ ++ GSPA+ G L D V+ NG+S+ V ++
Sbjct: 18 YGFYLRAGP----EQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEM 72
Query: 175 IAESRQEPQVELIVSRRIQPKY 196
I + + L+V + +
Sbjct: 73 IRKGGDQ--TTLLVLDKELERP 92
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 47.3 bits (113), Expect = 2e-07
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+ G + GG + + K++ G A L + GD+++ NG + G S Q+
Sbjct: 20 GAPWGFTLKGGL---EHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-SRQEA 75
Query: 172 EDIIAESRQEPQVELIVSRR 191
+I S + ++LIV RR
Sbjct: 76 LILIKGSFRI--LKLIVRRR 93
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 47.3 bits (112), Expect = 2e-07
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 106 DRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRG 165
++ +A+ T G + + EDG R + VK+ A +G L AGD+++E N R+
Sbjct: 13 EKSDTAADTYGFSLSSVE--EDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADA 69
Query: 166 KSFQDVEDIIAESRQEPQVELIVSRR 191
+ ++D + +P + L+V
Sbjct: 70 LNSSMLKDFL----SQPSLGLLVRTY 91
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 47.0 bits (112), Expect = 3e-07
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
++ V G PA+ G L D V++ N R + ++ I E + L+
Sbjct: 34 CDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSE--IILL 90
Query: 188 VSRRIQPK 195
V R P
Sbjct: 91 VWRVSGPS 98
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 47.5 bits (113), Expect = 3e-07
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
S LG + G G I VK GS + G L GDQ++E NG ++
Sbjct: 26 SRGLGCSISSGP---IQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEA 81
Query: 172 EDIIAESRQEPQVELIVSRRIQPKYAPTLSKD 203
+++ SR IV+ + + S
Sbjct: 82 VNVLKSSRSL--TISIVAAAGRELFMTDRSGP 111
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 46.7 bits (111), Expect = 3e-07
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
+ II + +G A+ G + G ++IE NG+S+ + + I++ + E ++ +
Sbjct: 31 QNGIICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTM 87
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 47.7 bits (114), Expect = 3e-07
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 278 DSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
D +L+VT++ A L R +G+PR PY KIY LPDR
Sbjct: 14 DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDR 51
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 46.6 bits (111), Expect = 3e-07
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 112 SSTLGIKVIGGKL----LEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKS 167
+ T G ++ L + + +V + SPA L G L GD + NG ++ G
Sbjct: 15 NQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIR 73
Query: 168 FQDVEDIIAESRQEPQVELIVSR 190
+++ DII S + L
Sbjct: 74 HREIVDIIKAS--GNVLRLETLY 94
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 47.7 bits (114), Expect = 4e-07
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 20/72 (27%)
Query: 245 NSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRC 304
N V GRI S+K+ + T LVV + L + R
Sbjct: 5 NIFVTGRIAF-----------------SLKY--EQQTQSLVVHVKECHQLAYADEAKKRS 45
Query: 305 -PYAKIYLLPDR 315
PY K YLLPD+
Sbjct: 46 NPYVKTYLLPDK 57
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 46.2 bits (110), Expect = 5e-07
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
++ V G PA+ G L D V++ N R + ++ I E + L+
Sbjct: 22 CDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSE--IILL 78
Query: 188 VSRRIQPKYAP 198
V R + P+ P
Sbjct: 79 VWRMV-PQVKP 88
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 47.4 bits (113), Expect = 5e-07
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 20/77 (25%)
Query: 239 DHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRS 298
HH + V G Q++ +D+ L++ +I L+ +
Sbjct: 3 HHHHHHSHKVQGAGQLRLSIDAQDRVLLLHIIE-------------------GKGLISKQ 43
Query: 299 NGQPRCPYAKIYLLPDR 315
G PY KI L+P+
Sbjct: 44 PGTCD-PYVKISLIPED 59
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 49.5 bits (117), Expect = 6e-07
Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
++G+++ GG G + V + SPA EG L GDQ++ N ++
Sbjct: 10 GDSVGLRLAGGND-----VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEA 63
Query: 172 EDIIAESRQEPQVELIVSRRIQPKY 196
+ + + +V ++ ++
Sbjct: 64 VLFLLDLPKGEEVTILAQKKKDVYR 88
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 47.3 bits (112), Expect = 6e-07
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 112 SSTLGIKVIGGK---------LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRS 162
+ LG + GG + +G + +V +G PA++ G L GD++++ NG
Sbjct: 37 NLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWD 95
Query: 163 MRGKSFQDVEDIIAESRQEPQVELIVSRRIQPK 195
M + + + +E V L+V+R+ K
Sbjct: 96 MTMVTHDQARKRLTKRSEEV-VRLLVTRQSLQK 127
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 47.4 bits (113), Expect = 6e-07
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 19/78 (24%)
Query: 238 TDHHPITNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPR 297
+ + ++ G ++ D L T+I A L P
Sbjct: 4 ANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIR-------------------AKGLKPM 44
Query: 298 SNGQPRCPYAKIYLLPDR 315
+ PY K++LLP
Sbjct: 45 DSNGLADPYVKLHLLPGA 62
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 45.8 bits (109), Expect = 8e-07
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Query: 112 SSTLGIKVIGGK---------LLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRS 162
S G V G E + V G AD G + GD+++E NG +
Sbjct: 16 ESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRILEVNGVN 74
Query: 163 MRGKSFQDVEDIIAESRQEPQVELIVSRR 191
+ G + + V D+I +E + L V
Sbjct: 75 VEGATHKQVVDLIRAGEKE--LILTVLSV 101
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 46.1 bits (109), Expect = 1e-06
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 112 SSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
G + + + +++VK+G PA G L GD++I+ NG S+ GK++ V
Sbjct: 43 DEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQV 101
Query: 172 EDIIAESRQEPQVELIVSRR 191
+I S + +EL V +
Sbjct: 102 IALIQNS--DTTLELSVMPK 119
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 45.8 bits (108), Expect = 1e-06
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 106 DRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRG 165
++ +A+ T G + + EDG R + VK+ A +G L AGD+++E N R+
Sbjct: 22 EKSDTAADTYGFSLSSVE--EDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADA 78
Query: 166 KSFQDVEDIIAESRQEPQVELIVSRRIQP 194
+ ++D + +P + L+V +
Sbjct: 79 LNSSMLKDFL----SQPSLGLLVRTYPEL 103
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 45.5 bits (108), Expect = 1e-06
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 112 SSTLGIKVIGGKL----LEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKS 167
+ T G ++ + +I K+++ SPA G L AGD + NG S G +
Sbjct: 26 NETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFT 84
Query: 168 FQDVEDIIAESRQEPQVELIV 188
++ V D+I S + +
Sbjct: 85 YKQVVDLIRSSGNL--LTIET 103
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 46.2 bits (110), Expect = 1e-06
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 21/71 (29%)
Query: 245 NSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRC 304
+ + G IQ++ D G L++ ++ A +LVPR N
Sbjct: 2 SHPITGEIQLQINYDLG---------------------NLIIHILQARNLVPRDNNGYSD 40
Query: 305 PYAKIYLLPDR 315
P+ K+YLLP R
Sbjct: 41 PFVKVYLLPGR 51
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 45.1 bits (107), Expect = 1e-06
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDI 174
G + G +G II+ ++ GSPA+ G L D V+ NG+S+ V ++
Sbjct: 19 YGFYLRAGP----EQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEM 73
Query: 175 IAESRQEPQVELIVSRRIQPKY 196
I + + L+V +
Sbjct: 74 IRKGGDQ--TTLLVLDKEAESI 93
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 45.8 bits (109), Expect = 2e-06
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 278 DSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
+ L V +M A L + P+ KIYLLPD+
Sbjct: 22 NFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDK 59
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 44.4 bits (105), Expect = 3e-06
Identities = 8/69 (11%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
G + + A + G GD ++ + + +V ++ ++ +
Sbjct: 42 GNAPVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKV 100
Query: 188 VSRRIQPKY 196
VS + +
Sbjct: 101 VSLLDEVTF 109
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 43.9 bits (104), Expect = 3e-06
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 133 IIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRR 191
++ V+ GSPA G L AGD + NG S+ G DV +++ +S + + L +
Sbjct: 37 VVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSGNK--ISLRTTAL 92
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 45.1 bits (107), Expect = 3e-06
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 21/71 (29%)
Query: 245 NSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRC 304
+ GRI ++ ++D L V + A +LVP
Sbjct: 15 SMERRGRIYIQAHIDREVLI---------------------VVVRDAKNLVPMDPNGLSD 53
Query: 305 PYAKIYLLPDR 315
PY K+ L+PD
Sbjct: 54 PYVKLKLIPDP 64
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 44.4 bits (105), Expect = 3e-06
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 125 LEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQV 184
+ D G +KVK + L GD + E ++++ + V +++ + V
Sbjct: 29 IADSPTG---QKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADV 85
Query: 185 ELIVSRRIQPKYAPT 199
L++ R P T
Sbjct: 86 PLLILRGGPPSPTKT 100
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 44.3 bits (105), Expect = 6e-06
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 272 SVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
+ + +L VT+ A +L+P PY K+ L+PD
Sbjct: 6 RIYLKAEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDP 49
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 43.3 bits (102), Expect = 7e-06
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 126 EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVE 185
+E V +G A G L GD +IE NG+++ + V ++I + +
Sbjct: 41 PAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQG--GNTLM 97
Query: 186 LIVSRRIQP 194
+ V +
Sbjct: 98 VKVVMVTRH 106
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 43.3 bits (102), Expect = 8e-06
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 128 GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELI 187
G + + A L G GD ++ G + + +V ++ E VE+
Sbjct: 34 GNTPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEE-VEMK 91
Query: 188 VSRRIQPKYAPTLSK 202
V + +K
Sbjct: 92 VVSL-LDSTSSMHNK 105
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 43.8 bits (104), Expect = 9e-06
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 273 VKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
VK + L + +M LV P PY K YLLPD
Sbjct: 11 VKLSVSYRNGTLFIMVMHIKDLVTEDGADPN-PYVKTYLLPDT 52
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 42.4 bits (100), Expect = 1e-05
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 125 LEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQV 184
+ D G ++VK+ L GD ++E N ++++ S +V DI+ + +
Sbjct: 27 IADSPTG---QRVKQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSET 83
Query: 185 ELIVSRRIQP 194
LI+ R P
Sbjct: 84 SLIIHRGSGP 93
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 44.5 bits (106), Expect = 2e-05
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
D +G ++ +V PA G + D +I + + S + D +AE R + +
Sbjct: 241 DQLQGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPA--ISALETMDQVAEIRPGSVIPV 297
Query: 187 IVSR 190
+V R
Sbjct: 298 VVMR 301
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 42.3 bits (100), Expect = 2e-05
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 278 DSGTLRLVVTLMCAASLVPR-SNGQPRCPYAKIYLLPDR 315
+ VV + A L PY K+ +LP++
Sbjct: 18 NFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEK 56
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 41.6 bits (98), Expect = 6e-05
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 278 DSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
+ L+V ++ L P+ K++L PD
Sbjct: 33 STQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDM 70
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 41.6 bits (98), Expect = 7e-05
Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 260 SGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
G R+ + L + D + + ++ ++L Q + ++ +LP
Sbjct: 27 VGATRIQIALKY------DEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCS 76
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 41.1 bits (96), Expect = 7e-05
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 133 IIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRI 192
+E V +G A G L GD +IE NG+++ + V ++I + + + V
Sbjct: 68 YLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQG--GNTLMVKVVMVT 124
Query: 193 QP 194
+
Sbjct: 125 RH 126
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 40.1 bits (94), Expect = 7e-05
Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 110 SASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQ 169
+A LG+ +I ++ G +G L GD + E NG+ + G +
Sbjct: 15 TAGEHLGVTF------RVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPR 67
Query: 170 DVEDIIAESRQEPQVELI 187
+++++ + ++++
Sbjct: 68 ALQELLRNASGSVILKIL 85
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 42.6 bits (101), Expect = 9e-05
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
D GA I +V +PA+ G L D +I NG+S+ S DV D+I + +
Sbjct: 251 DVISGAYIIEVIPDTPAEAGG-LKENDVIISINGQSV--VSANDVSDVIKRES---TLNM 304
Query: 187 IVSRR 191
+V R
Sbjct: 305 VVRRG 309
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 42.7 bits (101), Expect = 1e-04
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 125 LEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQV 184
+ +GA++ +V SPA+L G L AGD + + N + V+ I+ R V
Sbjct: 277 YPEDFQGALVSQVNPNSPAELAG-LKAGDIITQINDTKI--TQATQVKTTISLLRVGSTV 333
Query: 185 ELIVSRRIQPK 195
++IV R +P
Sbjct: 334 KIIVERDNKPL 344
Score = 39.6 bits (93), Expect = 9e-04
Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 126 EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVE 185
G + + S G + GD +I N + + + ++ I E ++ ++
Sbjct: 382 HGNVIGVQVVGASENSAGWRAG-IRPGDIIISANKKPV--TDVKSLQTIAQEKKK--ELL 436
Query: 186 LIVSRRIQPKYAPTL 200
+ V R Y +
Sbjct: 437 VQVLRGPGSMYLLVI 451
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 42.6 bits (101), Expect = 1e-04
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
D RGA + +V GS + G + AGD + NG+ + SF ++ IA + +V+L
Sbjct: 260 DVQRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPL--NSFAELRSRIATTEPGTKVKL 316
Query: 187 IVSRRIQPK 195
+ R +P
Sbjct: 317 GLLRNGKPL 325
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 40.8 bits (96), Expect = 1e-04
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 20/72 (27%)
Query: 244 TNSSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASLVPRSNGQPR 303
++ S G+IQ+ +++ S +L+V + +L+ S
Sbjct: 5 SSGSPLGQIQL-----------------TIRH--SSQRNKLIVVVHACRNLIAFSEDGS- 44
Query: 304 CPYAKIYLLPDR 315
PY ++YLLPD+
Sbjct: 45 DPYVRMYLLPDK 56
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 41.5 bits (96), Expect = 1e-04
Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 13/147 (8%)
Query: 112 SSTLGIKVIGGKLLED-----GTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGK 166
S LG + GG G + +V+ PA L GD++I+ NG S
Sbjct: 1 SPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINI 58
Query: 167 SFQDVEDIIAESRQEPQVELIVSRRIQPKYAPTLSKDV------YERVRDKPSVLVTSPG 220
++ + ++ ++ K + + V V+ +P
Sbjct: 59 EHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPT 118
Query: 221 SPDIHSGRPGRPVPSHHTDHHPITNSS 247
S I V + + +S
Sbjct: 119 SLLISWDASYYGVSYYRITYGETGGNS 145
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 39.6 bits (93), Expect = 2e-04
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
+ + G +++V SP+ G + GD +++ NGR + ++++ + + L
Sbjct: 32 EVSSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPL--VDSSELQEAVLTES---PLLL 85
Query: 187 IVSRRIQPK 195
V R
Sbjct: 86 EVRRGNDDL 94
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 39.2 bits (91), Expect = 2e-04
Identities = 6/58 (10%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 133 IIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190
++ ++ S A + G ++ +G + V + + + + V+
Sbjct: 5 VVGEIAANSIAAEAQ-IAPGTELKAVDGIETP--DWDAVRLQLVDKIGDESTTITVAP 59
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 39.5 bits (92), Expect = 2e-04
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 4/62 (6%)
Query: 129 TRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIV 188
G I+ V GSPA L G + NG + + + +
Sbjct: 24 PDGVQIDSVVPGSPA--SKVLTPGLVIESINGMPT--SNLTTYSAALKTISVGEVINITT 79
Query: 189 SR 190
+
Sbjct: 80 DQ 81
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 2e-04
Identities = 55/360 (15%), Positives = 103/360 (28%), Gaps = 79/360 (21%)
Query: 3 TRNNSGLRRQYSQQETTPYRIPSSDSGVDMRHSTARSRDEELRYYRGELEGSTGNEG--- 59
R S + R Y +Q Y + SR + R L +
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQV---FAKYN---VSRLQPYLKLRQALLELRPAKNVLI 155
Query: 60 SGSIG-GKE---KQAILDERIKKFLAHPLSW-------KPSADGKYMIG-HMILRKSGDR 107
G +G GK L +++ + + W P + + + +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 108 YPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKS 167
SS + +++ ++ R + K + LL V N ++ +
Sbjct: 216 RSDHSSNIKLRI---HSIQAELRRLLKSKPYENC-------LLVLLNV--QNAKAW--NA 261
Query: 168 F------------QDVEDII-AESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRDKPSV 214
F + V D + A + ++ + L K + R +D P
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 215 LVTSPGSPDIHS--GRPGRPVPSH-----HTDHHPITNSSVGGRIQVKF-YLDSGTLR-- 264
++T +P S R + H + +T I+ L+ R
Sbjct: 322 VLT--TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-----IESSLNVLEPAEYRKM 374
Query: 265 ---LVVTLIHSVK----------FYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYL 311
L V S F + + +VV + SLV + + IYL
Sbjct: 375 FDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Score = 33.7 bits (76), Expect = 0.081
Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 30/101 (29%)
Query: 123 KLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEP 182
K ++D + + S +++ H++ + ++R + + S+QE
Sbjct: 36 KDVQDMPKSIL-------SKEEID-HIIMSKDAVS---GTLR------LFWTL-LSKQEE 77
Query: 183 QVELIVSRRIQPKY------------APTLSKDVYERVRDK 211
V+ V ++ Y P++ +Y RD+
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 41.5 bits (98), Expect = 2e-04
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
D RGA + +V GS + G + AGD + NG+ + SF ++ IA + +V+L
Sbjct: 260 DVQRGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPL--NSFAELRSRIATTEPGTKVKL 316
Query: 187 IVSRRIQPK 195
+ R +P
Sbjct: 317 GLLRNGKPL 325
Score = 40.3 bits (95), Expect = 6e-04
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 125 LEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQV 184
L+DG +G I++V KGSPA G L D +I N + S ++ ++A +
Sbjct: 358 LKDGGKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRV--NSIAEMRKVLAAKPA--II 412
Query: 185 ELIVSRRIQPKYAP 198
L + R + Y
Sbjct: 413 ALQIVRGNESIYLL 426
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 41.2 bits (97), Expect = 3e-04
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
D RGA + +V S A G + AGD + NG+ + SF + + ++ L
Sbjct: 283 DAQRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPI--SSFAALRAQVGTMPVGSKLTL 339
Query: 187 IVSRRIQPK 195
+ R +
Sbjct: 340 GLLRDGKQV 348
Score = 40.4 bits (95), Expect = 5e-04
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 91 DGKYMIGHMIL-RKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHL 149
DGK + ++ L + S ++ S+S GI+ + +G ++ VK G+PA G L
Sbjct: 344 DGKQVNVNLELQQSSQNQVDSSSIFNGIEG-AEMSNKGKDQGVVVNNVKTGTPAAQIG-L 401
Query: 150 LAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPKYAP 198
GD +I N +++ K+ ++ ++ + L + R Y
Sbjct: 402 KKGDVIIGANQQAV--KNIAELRKVLDSKPS--VLALNIQRGDSTIYLL 446
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 39.4 bits (92), Expect = 4e-04
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 273 VKFYLDSGTLRLVVTLMCAASLVPRSNGQPRC-PYAKIYLLPDR 315
++ ++ +L V ++ A SL + + PY K+YLL +
Sbjct: 21 IQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENG 64
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 40.2 bits (94), Expect = 4e-04
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 273 VKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
G+ +LVV ++ A L + + PY KIYLLPDR
Sbjct: 11 FALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDR 53
Score = 32.9 bits (75), Expect = 0.13
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 283 RLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
L VT++ A++L PY K L+ +
Sbjct: 153 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEG 185
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 38.9 bits (91), Expect = 4e-04
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 278 DSGTLRLVVTLMCAASLVP-------RSNGQPRCPYAKIYLLPDR 315
D L V ++ A L P R + PY KI LLPD+
Sbjct: 22 DLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQ 66
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 38.1 bits (89), Expect = 5e-04
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
D G +I KV GSPA G L GD ++ + ++ + ED+ R + Q+ +
Sbjct: 32 DVQHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ-----NAEDVYEAVRTQSQLAV 85
Query: 187 IVSR 190
+ R
Sbjct: 86 QIRR 89
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 40.8 bits (94), Expect = 5e-04
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 9/92 (9%)
Query: 125 LEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQV 184
+ +G + V A G L AGD++I + +S + I+ V
Sbjct: 491 YKASPQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATEQSVK---RILERYIPGDTV 546
Query: 185 ELIVSRR-----IQPKYAPTLSKDVYERVRDK 211
+ RR ++ + V
Sbjct: 547 TIHAFRRDELMTLELTWQEPAKSSYVLSVEQP 578
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 38.0 bits (88), Expect = 5e-04
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 126 EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVE 185
+D G + K + G L GD + NG + + + + ++
Sbjct: 33 DDKVLGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMS 89
Query: 186 LIVSR 190
L V R
Sbjct: 90 LTVER 94
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 38.7 bits (91), Expect = 5e-04
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 123 KLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEP 182
+ + T G I+ V+ PA+ GHL D + + + + + S D++ +
Sbjct: 50 NIPSNVTSGVIVRSVQSNMPAN--GHLEKYDVITKVDDKEI--ASSTDLQSALYNHSIGD 105
Query: 183 QVELIVSR 190
+++ R
Sbjct: 106 TIKITYYR 113
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 37.3 bits (87), Expect = 6e-04
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
+ +G + V PA G L AGD++ +G+ + + + + + E + +V +
Sbjct: 2 NEAKGVYVMSVLPNMPAA--GRLEAGDRIAAIDGQPI--NTSEQIVSYVREKQAGDRVRV 57
Query: 187 IVSR 190
R
Sbjct: 58 TFIR 61
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 39.5 bits (93), Expect = 8e-04
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
D G +I KV GSPA G L GD ++ + + ++ +DV + + Q+ +
Sbjct: 253 DVQHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMV--QNAEDVYEAVRTQS---QLAV 306
Query: 187 IVSRR 191
+ R
Sbjct: 307 QIRRG 311
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 39.2 bits (92), Expect = 0.001
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
T GA I +V G A G + G V + + R + S + + V L
Sbjct: 239 KDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPI--NSADALVAAVRSKAPGATVAL 295
Query: 187 IVSRR 191
Sbjct: 296 TFQDP 300
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 39.0 bits (91), Expect = 0.001
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 273 VKFYLDSGTLRLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
D +L+V ++ AA L G PY K++LLPD+
Sbjct: 10 YSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK 52
Score = 32.9 bits (75), Expect = 0.10
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 283 RLVVTLMCAASLVPRSNGQPRCPYAKIYLLPD 314
+L V ++ A +L G PY KI+L+ +
Sbjct: 151 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN 182
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.002
Identities = 56/309 (18%), Positives = 96/309 (31%), Gaps = 110/309 (35%)
Query: 42 EELR--Y--YRGELE------GSTGNEGSGSIGGKEK--QAILDERIKKFLAHPLSWKPS 89
EELR Y Y + T +E + EK L+ I ++L +P + P
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN--ILEWLENPSN-TPD 227
Query: 90 ADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHL 149
D Y+ S + +IG + + K+ +P +L +L
Sbjct: 228 KD--YL---------------LSIPISCPLIG---VIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 150 LA----GDQVI---------EWNGRSMRGKSFQD-VEDII-------AESRQE-PQVELI 187
++ W +SF V I + P L
Sbjct: 268 KGATGHSQGLVTAVAIAETDSW-------ESFFVSVRKAITVLFFIGVRCYEAYPNTSL- 319
Query: 188 VSRRIQPKYAPTLSKDVYERVRDKPS--VLVTSPGSPDIHSGRPGRPVPSHHTDHHPITN 245
P++ +D E PS + +++ + + + TN
Sbjct: 320 ---------PPSILEDSLENNEGVPSPMLSISNLTQEQVQD----------YVNK---TN 357
Query: 246 SSVGGRIQVKFYLDSGTLRLVVTLIHSVKFYLDSG---TLR-LVVTL--MCAASLVPRSN 299
S + QV+ L +G LVV+ G +L L +TL A P
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVS-----------GPPQSLYGLNLTLRKAKA----PSGL 402
Query: 300 GQPRCPYAK 308
Q R P+++
Sbjct: 403 DQSRIPFSE 411
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 37.0 bits (86), Expect = 0.002
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 283 RLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
L V ++ A L PY K+ L +
Sbjct: 31 TLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAK 63
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 35.6 bits (82), Expect = 0.003
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 3/70 (4%)
Query: 126 EDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVE 185
+D G + K + G L GD + NG + + + + ++
Sbjct: 15 DDKVLGYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMS 71
Query: 186 LIVSRRIQPK 195
L V R Q
Sbjct: 72 LTVERDGQQH 81
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 35.7 bits (83), Expect = 0.003
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 131 GAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190
G V + PA +G + GD++I +G++ +S + + D I+ + +V L + R
Sbjct: 2 GIYASSVVENMPA--KGKIEVGDKIISADGKNY--QSAEKLIDYISSKKAGDKVTLKIER 57
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 38.0 bits (89), Expect = 0.003
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 115 LGIKVIGGKLLE-DGTRGAIIEKVKKGSPAD----------LEGHLLAGDQVIEWNGRSM 163
LGIK + +E G G ++ PA G L+ GD + NG +
Sbjct: 235 LGIKFAPDQSVEQLGVSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKV 294
Query: 164 RGKSFQDVEDIIAESRQEPQVELIVSR 190
+ D+ I+ + + +V + V R
Sbjct: 295 --SNGSDLYRILDQCKVGDEVTVEVLR 319
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 35.5 bits (82), Expect = 0.003
Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 132 AIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSR 190
++E V+ S A G L AGD+++ +G+ + + ++ ++ + L + R
Sbjct: 6 PVLENVQPNSAASXAG-LQAGDRIVXVDGQPLT--QWVTFVMLVRDNPGXS-LALEIER 60
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 35.9 bits (83), Expect = 0.006
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 283 RLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
+L V ++ A +L G PY KI+L+ +
Sbjct: 26 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNG 58
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 34.8 bits (79), Expect = 0.008
Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 109 PSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPA-DLEGHLLAGDQVIEWNGRSMRGKS 167
+ G V + +++V + + + + GD+++E NG +R
Sbjct: 23 ATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLR 82
Query: 168 FQDVEDIIAESRQEPQVELIVSRRIQPKY 196
++VED I ++ Q ++L++ P+
Sbjct: 83 VEEVEDAIKQTSQ--TLQLLIEHDPVPQR 109
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 36.3 bits (84), Expect = 0.011
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 112 SSTLGIKVIGGKLLEDGTRG-AIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQD 170
+ G K+L++ T A+I V GSPA+ G L G ++ NG + K +
Sbjct: 71 IPSYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKVESE 129
Query: 171 V 171
+
Sbjct: 130 L 130
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 34.6 bits (80), Expect = 0.013
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 283 RLVVTLMCAASLVPRSNGQPRCPYAKIYLLPDR 315
++V ++ A +L G PY K++L+
Sbjct: 17 SIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKD 49
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 33.4 bits (77), Expect = 0.016
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 130 RGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVS 189
G + VK PA L AGD + E +G + KS Q+ D I + V++
Sbjct: 7 DGVYVMSVKDDVPAA--DVLHAGDLITEIDGNAF--KSSQEFIDYIHSKKVGDTVKINYK 62
Query: 190 R 190
Sbjct: 63 H 63
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 35.7 bits (83), Expect = 0.018
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Query: 115 LGIKVIGGKLLEDGTRGAIIEKVK---KGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDV 171
+G+++ + G+ + V G PA+ G AGD ++ +G +++G S DV
Sbjct: 87 VGLEIT----YDGGSGKDV--VVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDV 139
Query: 172 EDIIAESRQEP--QVELIVSRRIQPK 195
D++ + E QVE+++ P
Sbjct: 140 SDLL---QGEADSQVEVVLHAPGAPS 162
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 33.1 bits (76), Expect = 0.040
Identities = 6/40 (15%), Positives = 11/40 (27%), Gaps = 7/40 (17%)
Query: 278 DSGTLRLVVTLMCAASLVP--RSNGQPRCPYAKIYLLPDR 315
D L VT + A + + Y + +
Sbjct: 22 DCQKAELFVTRLEAVTSNHDGGCD-----CYVQGSVANRT 56
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 32.7 bits (75), Expect = 0.045
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 279 SGTLRLVVTLMCAASLVPR-SNGQPRCPYAKIYLLPDR 315
S +++ +T++CA +L + P P+AKI +
Sbjct: 2 SEFIKIRLTVLCAKNLAKKDFFRLPD-PFAKIVVDGSG 38
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.090
Identities = 18/69 (26%), Positives = 21/69 (30%), Gaps = 39/69 (56%)
Query: 67 EKQAILDERIKKFLAHPLSWKPSADGKYMIGHMILRKSGDRYPSASSTLGIKVIGGKLLE 126
EKQA +KK A S K AD D P+ L IK
Sbjct: 18 EKQA-----LKKLQA---SLKLYAD--------------DSAPA----LAIK-------- 43
Query: 127 DGTRGAIIE 135
A +E
Sbjct: 44 -----ATME 47
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 32.0 bits (72), Expect = 0.17
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 109 PSASSTLGIKVIGGKLLEDGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSF 168
LG+ + + +V+ SPA L G D +I +
Sbjct: 91 WGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTVM---NES 147
Query: 169 QDVEDIIAESRQEPQVELIVSRR 191
+D+ +I +P ++L V
Sbjct: 148 EDLFSLIETHEAKP-LKLYVYNT 169
Score = 31.2 bits (70), Expect = 0.34
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 127 DGTRGAIIEKVKKGSPADLEGHLLAGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVEL 186
GT G + +V++ SP G D ++ NG + D + ++ E V++
Sbjct: 13 GGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLN--KDNDTLKDLLKANVEKPVKM 70
Query: 187 IVSR 190
++
Sbjct: 71 LIYS 74
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.0 bits (67), Expect = 0.77
Identities = 8/61 (13%), Positives = 18/61 (29%), Gaps = 5/61 (8%)
Query: 187 IVSRRIQPKYAPTLSKDVYERV-----RDKPSVLVTSPGSPDIHSGRPGRPVPSHHTDHH 241
+++R K A ++ + + P +V D+ G + D
Sbjct: 1 MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTR 60
Query: 242 P 242
Sbjct: 61 S 61
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 29.0 bits (64), Expect = 2.8
Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 249 GGRIQVKFYLDSGTLRLVVTLI-------HSVKFYLDSGTLRLVVTLMCAASLVPRSNGQ 301
GGR+Q+ F + ++T H+V+ L + + A + +S +
Sbjct: 56 GGRLQLSFSIFCAEPATLLTDTPVNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRR 115
Query: 302 PRCPYAKIYL 311
++ +++
Sbjct: 116 DMTVFSGLFV 125
Score = 27.9 bits (61), Expect = 5.2
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 248 VGGRIQVKFYLDSGTLRLVVTLI-------HSVKFYLDSGTLRLVV 286
+ G + + + SGT+++ + V F D + + V
Sbjct: 488 LDGHLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGTISV 533
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 27.0 bits (60), Expect = 6.0
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 276 YLDSGTLRLVVTLMCAASLVPR-SNGQPRC-PYAKIYLLPDR 315
+ + + V ++ L + G PY ++ L
Sbjct: 14 EDEENSRIVRVRVIAGIGLAKKDILG--ASDPYVRVTLYDPM 53
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 27.7 bits (61), Expect = 6.0
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 8/47 (17%)
Query: 248 VGGRIQVKFYLDSGTLRLVVTLI--------HSVKFYLDSGTLRLVV 286
V G + F L +G + + H+V D+ L V
Sbjct: 59 VKGYLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVK 105
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 27.6 bits (60), Expect = 6.6
Identities = 8/42 (19%), Positives = 11/42 (26%), Gaps = 8/42 (19%)
Query: 253 QVKFYLDSGTLRLVVTLIHSVKFYLDSGTLRLVVTLMCAASL 294
SG H V L+ G ++ C L
Sbjct: 475 SCDRSPHSGF--------HEVTCELNHGRVKFSYHAKCLPHL 508
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline
type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus
musculus} PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A*
3b6p_A* 2o4i_A 2oa8_A
Length = 242
Score = 26.9 bits (59), Expect = 7.5
Identities = 8/53 (15%), Positives = 21/53 (39%), Gaps = 11/53 (20%)
Query: 207 RVRDKPSVLVTSPGSPDIHSGRPGRPVPSHHTDHHPITNSSVGGRIQVKFYLD 259
RV DK S+ + PG+ ++ ++ + + + + +F +
Sbjct: 62 RVVDKLSLCI-----------APGKACSPGASEITGLSKAELEVQGRQRFDDN 103
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 27.3 bits (61), Expect = 7.7
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 14/84 (16%)
Query: 151 AGDQVIEWNGRSMRGKSFQDVEDIIAESRQEPQVELIVSRRIQPKYAPTLSKDVYERVRD 210
A + V+ + + ++ +S P+ L R A + D RV +
Sbjct: 358 AAELVVAEALAIYAQRMAPHMAEVWDKSVGYPETLLGFRYRSS---AVLATDDDPARVEN 414
Query: 211 KPSVLVTSPGSPDIHSGRPGRPVP 234
P SGRPG P
Sbjct: 415 -----------PLTPSGRPGFRGP 427
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4
PDB: 1pz8_A 1pz9_A 1q56_A
Length = 204
Score = 26.8 bits (59), Expect = 9.3
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 248 VGGRIQVKFYLDSGTLRLVVTLI------HSVKFYLDSGTLRLVV 286
V G +Q+ + L S + L T+ +K Y L V
Sbjct: 83 VDGFVQMMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQREGSLQV 127
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.135 0.392
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,980,693
Number of extensions: 313757
Number of successful extensions: 842
Number of sequences better than 10.0: 1
Number of HSP's gapped: 769
Number of HSP's successfully gapped: 242
Length of query: 315
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 222
Effective length of database: 4,105,140
Effective search space: 911341080
Effective search space used: 911341080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.5 bits)