BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4488
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H0A|A Chain A, Epsin Enth Bound To Ins(1,4,5)p3
Length = 158
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 74/107 (69%), Positives = 92/107 (85%)
Query: 87 GVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIW 146
+ LRR +KN+ HNYS+A++KVREATSNDPWGPSSSLMSEIADLTYNVVAF+EIM+MIW
Sbjct: 2 STSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIW 61
Query: 147 KRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTRIGGIFTHLIKTRSD 193
KRLND GKNWRHVYKA++L+EYLIKTGS++V++ + ++T D
Sbjct: 62 KRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKD 108
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 48/61 (78%), Gaps = 1/61 (1%)
Query: 1 VAFQCKENIFLIQTLRDFQYTE-EGKDQGFNVREKAKALATLLGDEERLRNERARQLKAR 59
V+ QCKEN++ +QTL+DFQY + +GKDQG NVREKAK L LL DE+RLR ERA LK +
Sbjct: 92 VSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREERAHALKTK 151
Query: 60 E 60
E
Sbjct: 152 E 152
>pdb|1INZ|A Chain A, Solution Structure Of The Epsin N-Terminal Homology (Enth)
Domain Of Human Epsin
Length = 148
Score = 167 bits (423), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 72/93 (77%), Positives = 87/93 (93%)
Query: 87 GVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIW 146
+ LRR +KN+ HNYS+A++KVREATSNDPWGPSSSLMSEIADLTYNVVAF+EIM+MIW
Sbjct: 6 STSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIW 65
Query: 147 KRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTR 179
KRLND GKNWRHVYKA++L+EYLIKTGS++V++
Sbjct: 66 KRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQ 98
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 43/53 (81%), Gaps = 1/53 (1%)
Query: 1 VAFQCKENIFLIQTLRDFQYTE-EGKDQGFNVREKAKALATLLGDEERLRNER 52
V+ QCKEN++ +QTL+DFQY + +GKDQG NVREKAK L LL DE+RLR ER
Sbjct: 96 VSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREER 148
>pdb|1EYH|A Chain A, Crystal Structure Of The Epsin N-Terminal Homology (Enth)
Domain At 1.56 Angstrom Resolution
Length = 144
Score = 156 bits (394), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 69/94 (73%), Positives = 84/94 (89%)
Query: 100 HNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLNDSGKNWRHV 159
HNYS+A++KVREATSNDPWGPSSSLMSEIADLTYNVVAF+EIM+MIWKRLND GKNWRHV
Sbjct: 1 HNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHV 60
Query: 160 YKALSLLEYLIKTGSDKVTRIGGIFTHLIKTRSD 193
YKA++L+EYLIKTGS++V++ + ++T D
Sbjct: 61 YKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKD 94
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 48/61 (78%), Gaps = 1/61 (1%)
Query: 1 VAFQCKENIFLIQTLRDFQYTE-EGKDQGFNVREKAKALATLLGDEERLRNERARQLKAR 59
V+ QCKEN++ +QTL+DFQY + +GKDQG NVREKAK L LL DE+RLR ERA LK +
Sbjct: 78 VSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREERAHALKTK 137
Query: 60 E 60
E
Sbjct: 138 E 138
>pdb|1EDU|A Chain A, Crystal Structure Of The Enth Domain Of Rat Epsin 1
Length = 149
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 67/97 (69%), Positives = 81/97 (83%)
Query: 97 NLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLNDSGKNW 156
N+ HNYS+A++KVREATSNDPWGPSSSL SEIADLTYNVVAF+EI + IWKRLND GKNW
Sbjct: 1 NIVHNYSEAEIKVREATSNDPWGPSSSLXSEIADLTYNVVAFSEIXSXIWKRLNDHGKNW 60
Query: 157 RHVYKALSLLEYLIKTGSDKVTRIGGIFTHLIKTRSD 193
RHVYKA +L EYLIKTGS++V++ + ++T D
Sbjct: 61 RHVYKAXTLXEYLIKTGSERVSQQCKENXYAVQTLKD 97
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Query: 1 VAFQCKENIFLIQTLRDFQYTE-EGKDQGFNVREKAKALATLLGDEERLRNERARQLKAR 59
V+ QCKEN + +QTL+DFQY + +GKDQG NVREKAK L LL DE+RLR ERA LK +
Sbjct: 81 VSQQCKENXYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREERAHALKTK 140
Query: 60 E 60
E
Sbjct: 141 E 141
>pdb|1XGW|A Chain A, The Crystal Structure Of Human Enthoprotin N-Terminal
Domain
Length = 176
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 97 NLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKR-LNDSGKN 155
N+ NYS+ + KVREAT++DPWGPS LM EIA T+ F E+M M+W R L D+ KN
Sbjct: 27 NVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKN 86
Query: 156 WRHVYKALSLLEYLIKTGSDKVT 178
WR VYK+L LL YLI+ GS++V
Sbjct: 87 WRRVYKSLLLLAYLIRNGSERVV 109
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 1 VAFQCKENIFLIQTLRDFQYTEE-GKDQGFNVREKAKALATLLGDEERLRNER 52
V +E+I+ +++L ++ + +E GKDQG N+R+K K L D++RLR ER
Sbjct: 108 VVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDDRLREER 160
>pdb|2QY7|A Chain A, Crystal Structure Of Human Epsinr Enth Domain
pdb|2QY7|B Chain B, Crystal Structure Of Human Epsinr Enth Domain
pdb|2QY7|C Chain C, Crystal Structure Of Human Epsinr Enth Domain
pdb|2V8S|E Chain E, Vti1b Habc Domain - Epsinr Enth Domain Complex
Length = 147
Score = 96.3 bits (238), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 101 NYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKR-LNDSGKNWRHV 159
NYS+ + KVREAT++DPWGPS LM EIA T+ F E+M M+W R L D+ KNWR V
Sbjct: 1 NYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRV 60
Query: 160 YKALSLLEYLIKTGSDKVT 178
YK+L LL YLI+ GS++V
Sbjct: 61 YKSLLLLAYLIRNGSERVV 79
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 1 VAFQCKENIFLIQTLRDFQYTEE-GKDQGFNVREKAKALATLLGDEERLRNER 52
V +E+I+ +++L ++ + +E GKDQG N+R+K K L D++RLR ER
Sbjct: 78 VVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDDRLREER 130
>pdb|3ONK|A Chain A, Yeast Ent3_enth Domain
pdb|3ONL|A Chain A, Yeast Ent3_enth-Vti1p_habc Complex Structure
pdb|3ONL|B Chain B, Yeast Ent3_enth-Vti1p_habc Complex Structure
Length = 150
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 101 NYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLND-SGKNWRHV 159
NY++ + KVREAT+N+PWG SS+LM +I+ TYN EI++MI++R + +G WR +
Sbjct: 8 NYTEMEGKVREATNNEPWGASSTLMDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQI 67
Query: 160 YKALSLLEYLIKTGSDK 176
YKAL LL+YLIK GS++
Sbjct: 68 YKALQLLDYLIKHGSER 84
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 5 CKENIFLIQTLRDFQYTE-EGKDQGFNVREKAKALATLLGDEERLRNERARQLKARE 60
+ +I LI+ L F Y + +G+DQG NVR + KAL LL D+ ++R ER KARE
Sbjct: 89 TRNSINLIRILETFHYIDSQGRDQGINVRTRVKALIELLSDDNKIRAERK---KARE 142
>pdb|2WAG|A Chain A, The Structure Of A Family 25 Glycosyl Hydrolase From
Bacillus Anthracis
Length = 220
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 18 FQYTEEGKDQGFNVREKAKALATLLGDEERLRN 50
+QYT GK G+N +EK L G+EE N
Sbjct: 183 WQYTNRGKLSGYNGKEKYIDLNVFYGNEEEFEN 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,737,233
Number of Sequences: 62578
Number of extensions: 155530
Number of successful extensions: 490
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 25
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)