Query psy4488
Match_columns 194
No_of_seqs 214 out of 520
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 18:23:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4488.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4488hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1inz_A EPS15-interacting porte 100.0 3.8E-44 1.3E-48 288.2 2.4 110 84-193 3-112 (148)
2 1xgw_A Epsin 4; ENTH, enthopro 100.0 1.2E-42 3.9E-47 286.6 11.0 109 85-193 15-124 (176)
3 3onk_A Epsin-3, ENT3; helix, p 100.0 2.4E-42 8.3E-47 278.3 10.6 100 94-193 1-101 (150)
4 1eyh_A Epsin; superhelix of he 100.0 6.5E-40 2.2E-44 262.4 10.6 94 100-193 1-94 (144)
5 1vdy_A Hypothetical protein (R 99.9 8.5E-27 2.9E-31 185.8 8.6 86 106-193 13-100 (140)
6 3onk_A Epsin-3, ENT3; helix, p 99.9 2.6E-22 9.1E-27 161.4 5.7 65 1-65 85-150 (150)
7 1xgw_A Epsin 4; ENTH, enthopro 99.9 2.4E-22 8.1E-27 165.5 4.8 67 1-67 108-175 (176)
8 1eyh_A Epsin; superhelix of he 99.8 1.2E-21 4.1E-26 156.5 5.9 65 1-65 78-143 (144)
9 3zyl_A Phosphatidylinositol-bi 99.6 9.4E-16 3.2E-20 133.1 11.0 102 87-192 12-114 (271)
10 1inz_A EPS15-interacting porte 99.6 9.1E-18 3.1E-22 134.6 -2.0 52 1-52 96-148 (148)
11 3zym_A Phosphatidylinositol-bi 99.6 1.1E-15 3.7E-20 134.9 10.6 101 88-192 13-114 (310)
12 1hx8_A Synapse-enriched clathr 99.3 6.6E-12 2.3E-16 109.8 10.0 98 88-188 8-106 (299)
13 1vdy_A Hypothetical protein (R 99.0 5.1E-11 1.7E-15 94.7 2.2 47 1-47 84-133 (140)
14 3rru_A TOM1L1 protein; structu 97.6 0.00033 1.1E-08 55.8 9.8 78 103-181 15-93 (152)
15 3ldz_A STAM-1, signal transduc 97.6 0.00034 1.2E-08 54.6 9.4 77 102-180 3-80 (140)
16 1elk_A Target of MYB1; superhe 97.6 0.00037 1.3E-08 55.4 9.6 77 103-180 15-92 (157)
17 1x5b_A Signal transducing adap 97.5 0.00037 1.3E-08 55.8 8.9 75 103-179 14-89 (163)
18 3zyq_A Hepatocyte growth facto 97.4 0.00053 1.8E-08 57.4 8.9 80 99-180 3-83 (226)
19 1juq_A ADP-ribosylation factor 97.4 0.00052 1.8E-08 55.4 8.3 77 102-180 11-88 (171)
20 3g2s_A C-terminal fragment of 97.4 0.00088 3E-08 53.1 9.4 77 102-180 9-86 (149)
21 1mhq_A ADP-ribosylation factor 97.3 0.0015 5E-08 51.6 9.4 74 105-180 2-76 (148)
22 1dvp_A HRS, hepatocyte growth 97.1 0.002 6.8E-08 53.3 9.1 75 103-179 4-79 (220)
23 2djn_A Homeobox protein DLX-5; 40.5 47 0.0016 21.7 4.6 34 101-134 13-46 (70)
24 2db0_A 253AA long hypothetical 34.8 51 0.0018 27.7 4.8 61 103-175 4-65 (253)
25 1sz9_A PCF11 protein; RNA poly 34.5 1.1E+02 0.0039 23.1 6.6 63 118-184 23-85 (144)
26 2dmu_A Homeobox protein goosec 33.0 36 0.0012 22.2 3.0 34 101-134 13-46 (70)
27 2cue_A Paired box protein PAX6 31.5 73 0.0025 21.3 4.5 35 101-135 13-47 (80)
28 2e1o_A Homeobox protein PRH; D 30.5 45 0.0015 21.8 3.2 33 101-133 13-45 (70)
29 2cra_A Homeobox protein HOX-B1 27.5 57 0.0019 21.3 3.3 35 101-135 13-47 (70)
30 2da2_A Alpha-fetoprotein enhan 24.2 70 0.0024 20.7 3.3 34 101-134 13-46 (70)
31 2dms_A Homeobox protein OTX2; 21.9 79 0.0027 21.1 3.2 34 101-134 13-46 (80)
32 2da1_A Alpha-fetoprotein enhan 21.7 54 0.0019 21.3 2.3 34 101-134 13-46 (70)
33 2dmq_A LIM/homeobox protein LH 21.6 81 0.0028 20.9 3.2 34 101-134 13-46 (80)
34 4hfx_A Transcription elongatio 21.4 71 0.0024 23.3 3.0 42 120-164 25-75 (97)
No 1
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=100.00 E-value=3.8e-44 Score=288.15 Aligned_cols=110 Identities=67% Similarity=1.067 Sum_probs=106.8
Q ss_pred HHhhhHHHHHHHHhhhccchHHHHHHHHhhcCCCCCCCHHHHHHHHHHccChhhHHHHHHHHHHHhCcCCCchHHHHHHH
Q psy4488 84 IQEGVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLNDSGKNWRHVYKAL 163 (194)
Q Consensus 84 ~~~s~~~~~r~~kn~v~~~t~~E~~VreATsnd~wGps~~~m~eIa~~T~~~~~~~~Im~~l~kRL~~~~k~WR~vyKsL 163 (194)
+++++++++|+|||+++|||++|++|++|||||||||++++|++||++||++++|++||++||+||++++++||||||||
T Consensus 3 ~~~~~~~~~r~~~n~~~~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~k~WR~vyKaL 82 (148)
T 1inz_A 3 SRMSTSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAM 82 (148)
T ss_dssp SSCCCCCCCCCCCCCCSSCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSSHHHHHHHHHHHHGGGCCSSCTHHHHHHH
T ss_pred chhhHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchhHhhHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHhhhhhhhhcccccC
Q psy4488 164 SLLEYLIKTGSDKVTRIGGIFTHLIKTRSD 193 (194)
Q Consensus 164 ~LLeyLlknGse~vv~~~r~~~~~i~~L~d 193 (194)
+||||||+||||+||+++++|++.|++|++
T Consensus 83 ~lleyLl~nGse~vv~~~r~~~~~I~~L~~ 112 (148)
T 1inz_A 83 TLMEYLIKTGSERVSQQCKENMYAVQTLKD 112 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHhHHHHHhhcc
Confidence 999999999999999999999999999874
No 2
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=100.00 E-value=1.2e-42 Score=286.58 Aligned_cols=109 Identities=43% Similarity=0.734 Sum_probs=94.1
Q ss_pred HhhhHHHHHHHHhhhccchHHHHHHHHhhcCCCCCCCHHHHHHHHHHccChhhHHHHHHHHHHHh-CcCCCchHHHHHHH
Q psy4488 85 QEGVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRL-NDSGKNWRHVYKAL 163 (194)
Q Consensus 85 ~~s~~~~~r~~kn~v~~~t~~E~~VreATsnd~wGps~~~m~eIa~~T~~~~~~~~Im~~l~kRL-~~~~k~WR~vyKsL 163 (194)
...+++++|+|||+++|||++|++|+||||||||||++++|++||++||++++|++||++||+|| ++++++||+|||||
T Consensus 15 ~~~~r~~~r~~kn~v~~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vyKaL 94 (176)
T 1xgw_A 15 MWKVRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSL 94 (176)
T ss_dssp -------------CCCCCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999995 88999999999999
Q ss_pred HHHHHHHhcCChhHHHhhhhhhhhcccccC
Q psy4488 164 SLLEYLIKTGSDKVTRIGGIFTHLIKTRSD 193 (194)
Q Consensus 164 ~LLeyLlknGse~vv~~~r~~~~~i~~L~d 193 (194)
+||||||+||||+||+|+|+|++.|++|++
T Consensus 95 ~LLeYLl~nGse~vv~~~r~~i~~I~~L~~ 124 (176)
T 1xgw_A 95 LLLAYLIRNGSERVVTSAREHIYDLRSLEN 124 (176)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTHHHHHGGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHhHHHHHhhcc
Confidence 999999999999999999999999999975
No 3
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=100.00 E-value=2.4e-42 Score=278.27 Aligned_cols=100 Identities=42% Similarity=0.748 Sum_probs=90.9
Q ss_pred HHHhhhccchHHHHHHHHhhcCCCCCCCHHHHHHHHHHccChhhHHHHHHHHHHHhCcC-CCchHHHHHHHHHHHHHHhc
Q psy4488 94 NIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLNDS-GKNWRHVYKALSLLEYLIKT 172 (194)
Q Consensus 94 ~~kn~v~~~t~~E~~VreATsnd~wGps~~~m~eIa~~T~~~~~~~~Im~~l~kRL~~~-~k~WR~vyKsL~LLeyLlkn 172 (194)
+++|+++|||++|++|++||||||||||+++|++||++||++++|++||++||+||+++ +++||||||||+||||||+|
T Consensus 1 ~~~n~v~~ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~n 80 (150)
T 3onk_A 1 SLMSVDPNYTEMEGKVREATNNEPWGASSTLMDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKH 80 (150)
T ss_dssp -------CCCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999999999999986 68999999999999999999
Q ss_pred CChhHHHhhhhhhhhcccccC
Q psy4488 173 GSDKVTRIGGIFTHLIKTRSD 193 (194)
Q Consensus 173 Gse~vv~~~r~~~~~i~~L~d 193 (194)
|||+||+|+++|+++|++|++
T Consensus 81 Gse~vv~~~r~~~~~i~~L~~ 101 (150)
T 3onk_A 81 GSERFIDDTRNSINLIRILET 101 (150)
T ss_dssp SCHHHHHHHHTTHHHHHGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999975
No 4
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=100.00 E-value=6.5e-40 Score=262.40 Aligned_cols=94 Identities=73% Similarity=1.156 Sum_probs=92.2
Q ss_pred ccchHHHHHHHHhhcCCCCCCCHHHHHHHHHHccChhhHHHHHHHHHHHhCcCCCchHHHHHHHHHHHHHHhcCChhHHH
Q psy4488 100 HNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTR 179 (194)
Q Consensus 100 ~~~t~~E~~VreATsnd~wGps~~~m~eIa~~T~~~~~~~~Im~~l~kRL~~~~k~WR~vyKsL~LLeyLlknGse~vv~ 179 (194)
+|||++|++|++|||||||||++++|++||++||++++|++||++||+||++++++||||||||+||||||+||||+||+
T Consensus 1 ~~ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~ 80 (144)
T 1eyh_A 1 HNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQ 80 (144)
T ss_dssp CCCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCHhhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcccccC
Q psy4488 180 IGGIFTHLIKTRSD 193 (194)
Q Consensus 180 ~~r~~~~~i~~L~d 193 (194)
++++|++.|++|++
T Consensus 81 ~~~~~~~~i~~L~~ 94 (144)
T 1eyh_A 81 QCKENMYAVQTLKD 94 (144)
T ss_dssp HHHHTHHHHHGGGG
T ss_pred HHHHhhHHHhhhcc
Confidence 99999999999975
No 5
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=99.93 E-value=8.5e-27 Score=185.79 Aligned_cols=86 Identities=20% Similarity=0.179 Sum_probs=80.8
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHccCh--hhHHHHHHHHHHHhCcCCCchHHHHHHHHHHHHHHhcCChhHHHhhhh
Q psy4488 106 QVKVREATSNDPWGPSSSLMSEIADLTYNV--VAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTRIGGI 183 (194)
Q Consensus 106 E~~VreATsnd~wGps~~~m~eIa~~T~~~--~~~~~Im~~l~kRL~~~~k~WR~vyKsL~LLeyLlknGse~vv~~~r~ 183 (194)
+.+|++||||||||||+.+|+|||+.||++ +.|.+||++||+||.++ .|+++||+|.||+||++|||++|++++|.
T Consensus 13 ~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k--~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~ 90 (140)
T 1vdy_A 13 SRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNK--SPIVKQKALRLIKYAVGKSGSEFRREMQR 90 (140)
T ss_dssp HHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCC--CcceeehHHHHHHHHHHhCCHHHHHHHHH
Confidence 458999999999999999999999999996 55799999999999997 57899999999999999999999999999
Q ss_pred hhhhcccccC
Q psy4488 184 FTHLIKTRSD 193 (194)
Q Consensus 184 ~~~~i~~L~d 193 (194)
|.+.|++|.+
T Consensus 91 ~~~~Ik~l~~ 100 (140)
T 1vdy_A 91 NSVAVRNLFH 100 (140)
T ss_dssp TTHHHHTTTT
T ss_pred hHHHHHHHHh
Confidence 9999999874
No 6
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=99.85 E-value=2.6e-22 Score=161.42 Aligned_cols=65 Identities=34% Similarity=0.636 Sum_probs=56.9
Q ss_pred ChhHhhhhhhhhhhcccceecc-CCccchhhHHHHHHHHHHhhCCHHHHHHHHHHHHHhhhhhccC
Q psy4488 1 VAFQCKENIFLIQTLRDFQYTE-EGKDQGFNVREKAKALATLLGDEERLRNERARQLKARERFARS 65 (194)
Q Consensus 1 v~~~~r~~~~~i~~L~~F~y~d-~g~D~G~~VR~kak~l~~LL~D~~~lr~eR~~a~~~r~k~~~~ 65 (194)
||.+||+|+++|++|++|+|+| +|+|||+|||+|||+|++||+|+++|++||++|+++|+||.|+
T Consensus 85 vv~~~r~~~~~i~~L~~F~~~d~~G~D~G~~VR~kak~l~~LL~D~e~L~~eR~ka~~~~~k~~g~ 150 (150)
T 3onk_A 85 FIDDTRNSINLIRILETFHYIDSQGRDQGINVRTRVKALIELLSDDNKIRAERKKARETAKKYKGV 150 (150)
T ss_dssp HHHHHHTTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhcCC
Confidence 6889999999999999999998 8999999999999999999999999999999999999999874
No 7
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=99.85 E-value=2.4e-22 Score=165.48 Aligned_cols=67 Identities=33% Similarity=0.697 Sum_probs=53.9
Q ss_pred ChhHhhhhhhhhhhcccceecc-CCccchhhHHHHHHHHHHhhCCHHHHHHHHHHHHHhhhhhccCCC
Q psy4488 1 VAFQCKENIFLIQTLRDFQYTE-EGKDQGFNVREKAKALATLLGDEERLRNERARQLKARERFARSAS 67 (194)
Q Consensus 1 v~~~~r~~~~~i~~L~~F~y~d-~g~D~G~~VR~kak~l~~LL~D~~~lr~eR~~a~~~r~k~~~~~~ 67 (194)
||.+||+|+|.|++|++|+|+| +|+|||+|||+|||+|++||.|+++|++||++|+++|+||.|++|
T Consensus 108 vv~~~r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~D~e~Lr~eR~ka~k~r~k~~G~~s 175 (176)
T 1xgw_A 108 VVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDDRLREERKKAKKNKDKYVGVSS 175 (176)
T ss_dssp HHHHHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHHHHHHHHHHC------------
T ss_pred HHHHHHHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhccCCCC
Confidence 6899999999999999999997 899999999999999999999999999999999999999987654
No 8
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=99.84 E-value=1.2e-21 Score=156.52 Aligned_cols=65 Identities=62% Similarity=1.004 Sum_probs=63.0
Q ss_pred ChhHhhhhhhhhhhcccceecc-CCccchhhHHHHHHHHHHhhCCHHHHHHHHHHHHHhhhhhccC
Q psy4488 1 VAFQCKENIFLIQTLRDFQYTE-EGKDQGFNVREKAKALATLLGDEERLRNERARQLKARERFARS 65 (194)
Q Consensus 1 v~~~~r~~~~~i~~L~~F~y~d-~g~D~G~~VR~kak~l~~LL~D~~~lr~eR~~a~~~r~k~~~~ 65 (194)
||.+|++|++.|++|++|+|+| +|+|||+|||+||++|++||.|+++|++||++|+++|+||.+.
T Consensus 78 vv~~~~~~~~~i~~L~~F~y~d~~g~D~G~~VR~kak~l~~Ll~D~~~L~~eR~~a~~~r~k~~~~ 143 (144)
T 1eyh_A 78 VSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREERAHALKTKEKLAQT 143 (144)
T ss_dssp HHHHHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHhhhccceeeCCCccchHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcc
Confidence 6899999999999999999998 9999999999999999999999999999999999999999874
No 9
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=99.64 E-value=9.4e-16 Score=133.10 Aligned_cols=102 Identities=16% Similarity=0.240 Sum_probs=91.4
Q ss_pred hhHHHHHHHHhhhccchHHHHHHHHhhcCCCCCCCHHHHHHHHHHccChh-hHHHHHHHHHHHhCcCCCchHHHHHHHHH
Q psy4488 87 GVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVV-AFTEIMAMIWKRLNDSGKNWRHVYKALSL 165 (194)
Q Consensus 87 s~~~~~r~~kn~v~~~t~~E~~VreATsnd~wGps~~~m~eIa~~T~~~~-~~~~Im~~l~kRL~~~~k~WR~vyKsL~L 165 (194)
|+.+-+.+|||.+++ ++.|+.|..||++++|||..+.+.+|..+|+++. .+..||..|++||+ .++|.++||||++
T Consensus 12 ~~~~~~~~~~~~~~~-s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~--~~~w~v~~KaLiv 88 (271)
T 3zyl_A 12 SLTDRITAAQHSVTG-SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT--NSSWVVVFKSLIT 88 (271)
T ss_dssp CHHHHHHHHHHHHHH-HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTT--SSCHHHHHHHHHH
T ss_pred cHHHHHHHHHhcccc-hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhC--CCchHHHHHHHHH
Confidence 445678889999998 9999999999999999999999999999999975 57999999999999 3699999999999
Q ss_pred HHHHHhcCChhHHHhhhhhhhhccccc
Q psy4488 166 LEYLIKTGSDKVTRIGGIFTHLIKTRS 192 (194)
Q Consensus 166 LeyLlknGse~vv~~~r~~~~~i~~L~ 192 (194)
+++|++.|+|.|+.++..|..++ +|+
T Consensus 89 lH~llreG~~~~l~~~~~~~~~~-~Ls 114 (271)
T 3zyl_A 89 THHLMVYGNERFIQYLASRNTLF-NLS 114 (271)
T ss_dssp HHHHHHHSCHHHHHHHHHCSCCC-CCT
T ss_pred HHHHHhcCCHHHHHHHHhCCCee-chh
Confidence 99999999999999998776543 443
No 10
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=99.63 E-value=9.1e-18 Score=134.61 Aligned_cols=52 Identities=67% Similarity=1.082 Sum_probs=50.5
Q ss_pred ChhHhhhhhhhhhhcccceecc-CCccchhhHHHHHHHHHHhhCCHHHHHHHH
Q psy4488 1 VAFQCKENIFLIQTLRDFQYTE-EGKDQGFNVREKAKALATLLGDEERLRNER 52 (194)
Q Consensus 1 v~~~~r~~~~~i~~L~~F~y~d-~g~D~G~~VR~kak~l~~LL~D~~~lr~eR 52 (194)
||.+|++|++.|++|++|+|+| +|+|||+|||+|||+|++||.|+++|++||
T Consensus 96 vv~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l~~LL~D~e~L~~eR 148 (148)
T 1inz_A 96 VSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREER 148 (148)
T ss_dssp HHHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHHHHHHHHHHHTSCCSCCCCC
T ss_pred HHHHHHHhHHHHHhhcceeeeCCCCcCchHHHHHHHHHHHHHhCCHHHHHhcC
Confidence 5889999999999999999998 999999999999999999999999999987
No 11
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=99.63 E-value=1.1e-15 Score=134.86 Aligned_cols=101 Identities=16% Similarity=0.247 Sum_probs=90.9
Q ss_pred hHHHHHHHHhhhccchHHHHHHHHhhcCCCCCCCHHHHHHHHHHccChh-hHHHHHHHHHHHhCcCCCchHHHHHHHHHH
Q psy4488 88 VAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVV-AFTEIMAMIWKRLNDSGKNWRHVYKALSLL 166 (194)
Q Consensus 88 ~~~~~r~~kn~v~~~t~~E~~VreATsnd~wGps~~~m~eIa~~T~~~~-~~~~Im~~l~kRL~~~~k~WR~vyKsL~LL 166 (194)
+.+-+..|||.+++ ++.|+.|..||++++|+|..+.+.+|..+|+++. .+..||..|++||++ ++|+++||||+++
T Consensus 13 ~~~~~~~~~~~~~~-s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~~--~~w~vv~KaLivl 89 (310)
T 3zym_A 13 LTDRITAAQHSVTG-SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTN--SSWVVVFKSLITT 89 (310)
T ss_dssp HHHHHHHHHHCCHH-HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-cHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcCC--CchHHHHHHHHHH
Confidence 44567788999998 9999999999999999999999999999999886 578999999999994 6999999999999
Q ss_pred HHHHhcCChhHHHhhhhhhhhccccc
Q psy4488 167 EYLIKTGSDKVTRIGGIFTHLIKTRS 192 (194)
Q Consensus 167 eyLlknGse~vv~~~r~~~~~i~~L~ 192 (194)
++|++.|++.|++++..|..++ +|+
T Consensus 90 H~llreG~~~~l~~~~~~~~~~-~Ls 114 (310)
T 3zym_A 90 HHLMVYGNERFIQYLASRNTLF-NLS 114 (310)
T ss_dssp HHHHHHSCHHHHHHHHHCSCCC-CCT
T ss_pred HHHHhcCCHHHHHHHHhCCCee-ecc
Confidence 9999999999999998887654 443
No 12
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=99.31 E-value=6.6e-12 Score=109.81 Aligned_cols=98 Identities=15% Similarity=0.211 Sum_probs=74.8
Q ss_pred hHHHHHHHHhhhccchHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCh-hhHHHHHHHHHHHhCcCCCchHHHHHHHHHH
Q psy4488 88 VAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNV-VAFTEIMAMIWKRLNDSGKNWRHVYKALSLL 166 (194)
Q Consensus 88 ~~~~~r~~kn~v~~~t~~E~~VreATsnd~wGps~~~m~eIa~~T~~~-~~~~~Im~~l~kRL~~~~k~WR~vyKsL~LL 166 (194)
++..+..||+-.. .++.|+.|..||+.++|+|..+.+.+|..+|+++ .....++..|++|+. .++|.+++|||+++
T Consensus 8 ~~~~~~a~k~~~~-~~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~~--~~~w~va~K~Livl 84 (299)
T 1hx8_A 8 INDRLLAARHSLA-GQGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQ--NANWVVVYKSLITT 84 (299)
T ss_dssp ---------------CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHT--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhhccc-hhHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhcc--CCcHHHHHHHHHHH
Confidence 3344445553222 3689999999999999999999999999999998 457889999999964 45999999999999
Q ss_pred HHHHhcCChhHHHhhhhhhhhc
Q psy4488 167 EYLIKTGSDKVTRIGGIFTHLI 188 (194)
Q Consensus 167 eyLlknGse~vv~~~r~~~~~i 188 (194)
++||+.|++.|++++..+..++
T Consensus 85 H~llreG~~~~~~~l~~~~~~l 106 (299)
T 1hx8_A 85 HHLMAYGNERFMQYLASSNSTF 106 (299)
T ss_dssp HHHHHHSCHHHHHHHHHTTCCC
T ss_pred HHHHhcCCHHHHHHHHhCCccc
Confidence 9999999999999986554433
No 13
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=99.04 E-value=5.1e-11 Score=94.70 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=44.0
Q ss_pred ChhHhhhhhhhhhhcccceec-c--CCccchhhHHHHHHHHHHhhCCHHH
Q psy4488 1 VAFQCKENIFLIQTLRDFQYT-E--EGKDQGFNVREKAKALATLLGDEER 47 (194)
Q Consensus 1 v~~~~r~~~~~i~~L~~F~y~-d--~g~D~G~~VR~kak~l~~LL~D~~~ 47 (194)
|++++|.|++.|++|++|+|+ | .|.|+|++||++||+|++||.|++.
T Consensus 84 f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~~~ 133 (140)
T 1vdy_A 84 FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEEN 133 (140)
T ss_dssp HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHhCcCC
Confidence 578999999999999999999 4 6999999999999999999999864
No 14
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=97.65 E-value=0.00033 Score=55.79 Aligned_cols=78 Identities=13% Similarity=0.131 Sum_probs=63.4
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC-hhhHHHHHHHHHHHhCcCCCchHHHHHHHHHHHHHHhcCChhHHHhh
Q psy4488 103 SDAQVKVREATSNDPWGPSSSLMSEIADLTYN-VVAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTRIG 181 (194)
Q Consensus 103 t~~E~~VreATsnd~wGps~~~m~eIa~~T~~-~~~~~~Im~~l~kRL~~~~k~WR~vyKsL~LLeyLlknGse~vv~~~ 181 (194)
|+++..|..||+...-.|.-....+|++.--. ...-.+.+..|.|||.. +++.+.++-||+|||-|++||...|-.++
T Consensus 15 t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~-~~n~~~~l~AL~LLe~cvkNCG~~fh~ei 93 (152)
T 3rru_A 15 TSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISK-NYNHKEIQLTLSLIDMCVQNCGPSFQSLI 93 (152)
T ss_dssp SHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTT-CCBHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 79999999999988777888888888877433 34556899999999984 34667677799999999999999877654
No 15
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=97.62 E-value=0.00034 Score=54.62 Aligned_cols=77 Identities=18% Similarity=0.126 Sum_probs=62.7
Q ss_pred chHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCh-hhHHHHHHHHHHHhCcCCCchHHHHHHHHHHHHHHhcCChhHHHh
Q psy4488 102 YSDAQVKVREATSNDPWGPSSSLMSEIADLTYNV-VAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTRI 180 (194)
Q Consensus 102 ~t~~E~~VreATsnd~wGps~~~m~eIa~~T~~~-~~~~~Im~~l~kRL~~~~k~WR~vyKsL~LLeyLlknGse~vv~~ 180 (194)
-||.+..|..|||...-.|.-....+|++.--+. ..-.+.+..|.|||... +-...+-||+|||.|++||...|-.+
T Consensus 3 ~~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~--n~~~ql~AL~LLe~~vkNcG~~f~~e 80 (140)
T 3ldz_A 3 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHK--DPHVAMQALTLLGACVSNCGKIFHLE 80 (140)
T ss_dssp CCTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3788999999999987788888888888875443 34568899999999864 56678889999999999998765543
No 16
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=97.61 E-value=0.00037 Score=55.40 Aligned_cols=77 Identities=22% Similarity=0.270 Sum_probs=62.0
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC-hhhHHHHHHHHHHHhCcCCCchHHHHHHHHHHHHHHhcCChhHHHh
Q psy4488 103 SDAQVKVREATSNDPWGPSSSLMSEIADLTYN-VVAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTRI 180 (194)
Q Consensus 103 t~~E~~VreATsnd~wGps~~~m~eIa~~T~~-~~~~~~Im~~l~kRL~~~~k~WR~vyKsL~LLeyLlknGse~vv~~ 180 (194)
|+++..|..|||...-.|.-....+|++.--+ ...-.+.+..|.|||..+ ++....+-||+|||.|++||...|-.+
T Consensus 15 s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~-~n~~v~l~AL~LLd~~vkNcG~~fh~e 92 (157)
T 1elk_A 15 SPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGN-KNFHEVMLALTVLETCVKNCGHRFHVL 92 (157)
T ss_dssp SHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 48999999999988778888888888876432 345578999999999853 467777889999999999998776554
No 17
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=97.55 E-value=0.00037 Score=55.79 Aligned_cols=75 Identities=20% Similarity=0.131 Sum_probs=59.0
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHcc-ChhhHHHHHHHHHHHhCcCCCchHHHHHHHHHHHHHHhcCChhHHH
Q psy4488 103 SDAQVKVREATSNDPWGPSSSLMSEIADLTY-NVVAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTR 179 (194)
Q Consensus 103 t~~E~~VreATsnd~wGps~~~m~eIa~~T~-~~~~~~~Im~~l~kRL~~~~k~WR~vyKsL~LLeyLlknGse~vv~ 179 (194)
+|.+..|..||+...-.|.-....+|++.-- ++..-.+.+..|.|||... +-...+-||+|||.|++||...|-.
T Consensus 14 ~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~--n~~vql~AL~LLd~~vkNcG~~Fh~ 89 (163)
T 1x5b_A 14 NPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHK--VPHVALQALTLLGACVANCGKIFHL 89 (163)
T ss_dssp CTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5677899999998777778788888887642 2345568999999999864 4556677999999999998876653
No 18
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=97.44 E-value=0.00053 Score=57.37 Aligned_cols=80 Identities=21% Similarity=0.144 Sum_probs=63.1
Q ss_pred hccchHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCh-hhHHHHHHHHHHHhCcCCCchHHHHHHHHHHHHHHhcCChhH
Q psy4488 99 AHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNV-VAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKV 177 (194)
Q Consensus 99 v~~~t~~E~~VreATsnd~wGps~~~m~eIa~~T~~~-~~~~~Im~~l~kRL~~~~k~WR~vyKsL~LLeyLlknGse~v 177 (194)
..+-++.|..|..||+...-.|.-....+|++.--.. ..=.+.+..|.|||.. ++-...+-||+|||.|++|+...|
T Consensus 3 ~~~~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~--~n~~v~l~aL~LLe~~vkNcG~~f 80 (226)
T 3zyq_A 3 GRGSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVND--KNPHVALYALEVMESVVKNCGQTV 80 (226)
T ss_dssp ----CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCHHH
T ss_pred CCCCchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcchHH
Confidence 3455899999999999988888888888888875443 3356899999999984 467788999999999999988765
Q ss_pred HHh
Q psy4488 178 TRI 180 (194)
Q Consensus 178 v~~ 180 (194)
-.+
T Consensus 81 ~~e 83 (226)
T 3zyq_A 81 HDE 83 (226)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 19
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=97.42 E-value=0.00052 Score=55.40 Aligned_cols=77 Identities=10% Similarity=0.075 Sum_probs=61.6
Q ss_pred chHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC-hhhHHHHHHHHHHHhCcCCCchHHHHHHHHHHHHHHhcCChhHHHh
Q psy4488 102 YSDAQVKVREATSNDPWGPSSSLMSEIADLTYN-VVAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTRI 180 (194)
Q Consensus 102 ~t~~E~~VreATsnd~wGps~~~m~eIa~~T~~-~~~~~~Im~~l~kRL~~~~k~WR~vyKsL~LLeyLlknGse~vv~~ 180 (194)
.|+.+..|..||+...-.|.-....+|++.--+ ...-.+.+..|.|||... +-...+-||+|||.|++||...|-.+
T Consensus 11 ~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~--n~~vql~AL~LLd~~vkNCG~~Fh~e 88 (171)
T 1juq_A 11 GESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSP--QEWEALQALTVLEACMKNCGRRFHNE 88 (171)
T ss_dssp -CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 578999999999987777787888888876332 345568899999999864 67788999999999999988765543
No 20
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=97.41 E-value=0.00088 Score=53.07 Aligned_cols=77 Identities=9% Similarity=0.040 Sum_probs=64.2
Q ss_pred chHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCh-hhHHHHHHHHHHHhCcCCCchHHHHHHHHHHHHHHhcCChhHHHh
Q psy4488 102 YSDAQVKVREATSNDPWGPSSSLMSEIADLTYNV-VAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTRI 180 (194)
Q Consensus 102 ~t~~E~~VreATsnd~wGps~~~m~eIa~~T~~~-~~~~~Im~~l~kRL~~~~k~WR~vyKsL~LLeyLlknGse~vv~~ 180 (194)
-|+.+..|..||+...-.|.-....+|++.--.. ..-.+.+..|.|||.. ++-...+-||+|||.|++||...|-.+
T Consensus 9 ~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~--~n~~v~l~AL~LLe~cvkNCG~~fh~e 86 (149)
T 3g2s_A 9 PETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQS--PQEWEAIQALTVLETCMKSCGKRFHDE 86 (149)
T ss_dssp CCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3788999999999998888888999999885443 3456789999999985 477888999999999999999887443
No 21
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=97.30 E-value=0.0015 Score=51.57 Aligned_cols=74 Identities=12% Similarity=0.086 Sum_probs=59.3
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHccC-hhhHHHHHHHHHHHhCcCCCchHHHHHHHHHHHHHHhcCChhHHHh
Q psy4488 105 AQVKVREATSNDPWGPSSSLMSEIADLTYN-VVAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTRI 180 (194)
Q Consensus 105 ~E~~VreATsnd~wGps~~~m~eIa~~T~~-~~~~~~Im~~l~kRL~~~~k~WR~vyKsL~LLeyLlknGse~vv~~ 180 (194)
.+..|..||+...-.|.-....+|++.--. +..-.+.+..|.|||.. ++-...+-||+|||.|++||...|-.+
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~--~n~~vql~AL~LLe~~vkNCG~~fh~e 76 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQS--PQEKEALYALTVLEMCMNHCGEKFHSE 76 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 467899999987777887888888877432 34556889999999985 477888999999999999988876444
No 22
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=97.15 E-value=0.002 Score=53.32 Aligned_cols=75 Identities=24% Similarity=0.172 Sum_probs=61.2
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC-hhhHHHHHHHHHHHhCcCCCchHHHHHHHHHHHHHHhcCChhHHH
Q psy4488 103 SDAQVKVREATSNDPWGPSSSLMSEIADLTYN-VVAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTR 179 (194)
Q Consensus 103 t~~E~~VreATsnd~wGps~~~m~eIa~~T~~-~~~~~~Im~~l~kRL~~~~k~WR~vyKsL~LLeyLlknGse~vv~ 179 (194)
|+++..|..|||...-.|.-....+|++.--. ...=.+.+..|.|||.. ++-...+-||+|||.|++|+...|-.
T Consensus 4 ~~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~--~n~~~~l~aL~Lle~~vkNcG~~f~~ 79 (220)
T 1dvp_A 4 SSFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNS--PNPHSSCYSLLVLESIVKNCGAPVHE 79 (220)
T ss_dssp SHHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred chHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhccCHHHHH
Confidence 56899999999988778888888888877433 33556899999999986 46788999999999999998776544
No 23
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.52 E-value=47 Score=21.70 Aligned_cols=34 Identities=15% Similarity=-0.077 Sum_probs=26.7
Q ss_pred cchHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC
Q psy4488 101 NYSDAQVKVREATSNDPWGPSSSLMSEIADLTYN 134 (194)
Q Consensus 101 ~~t~~E~~VreATsnd~wGps~~~m~eIa~~T~~ 134 (194)
.+|+.++.+.|+.-..+--|+.....+||..+-=
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l 46 (70)
T 2djn_A 13 IYSSFQLAALQRRFQKTQYLALPERAELAASLGL 46 (70)
T ss_dssp SSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSC
T ss_pred CCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Confidence 4678888887777766667899999999988743
No 24
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=34.81 E-value=51 Score=27.73 Aligned_cols=61 Identities=23% Similarity=0.437 Sum_probs=41.3
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHH-HHHHccChhhHHHHHHHHHHHhCcCCCchHHHHHHHHHHHHHHhcCCh
Q psy4488 103 SDAQVKVREATSNDPWGPSSSLMSE-IADLTYNVVAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSD 175 (194)
Q Consensus 103 t~~E~~VreATsnd~wGps~~~m~e-Ia~~T~~~~~~~~Im~~l~kRL~~~~k~WR~vyKsL~LLeyLlknGse 175 (194)
.+.|..+|||.-+ |..+++ |++++|+. +|.+-+-.-|.|+ -|...-.+|+++--+.+.=++
T Consensus 4 e~~e~d~realat------ge~~~eii~~a~~d~----~~l~~lI~~LDDD--lwtV~kNAl~vi~~i~~~~~e 65 (253)
T 2db0_A 4 EEEEFDIREALAN------GEHLEKILIMAKYDE----SVLKKLIELLDDD--LWTVVKNAISIIMVIAKTRED 65 (253)
T ss_dssp -----CHHHHHHT------TCSHHHHHHHHHHCH----HHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCGG
T ss_pred hHhhhhHHHHHhh------hhhHHHHHHHHHhhH----HHHHHHHHHhccH--HHHHHHhHHHHHHHHHHHhHH
Confidence 4578889999854 445776 67899997 4555555556665 899999999999877665544
No 25
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=34.50 E-value=1.1e+02 Score=23.09 Aligned_cols=63 Identities=14% Similarity=0.058 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHccChhhHHHHHHHHHHHhCcCCCchHHHHHHHHHHHHHHhcCChhHHHhhhhh
Q psy4488 118 WGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTRIGGIF 184 (194)
Q Consensus 118 wGps~~~m~eIa~~T~~~~~~~~Im~~l~kRL~~~~k~WR~vyKsL~LLeyLlknGse~vv~~~r~~ 184 (194)
-+|.-..|..+|. .+......|++++.+++...+ -.+-+=+|-|++-.++|....+...|-.+
T Consensus 23 Sk~~I~~LT~~a~--~~~~~a~~Iv~~i~~~i~k~~--p~~KL~~LYL~DsIvkN~g~~y~~~F~~~ 85 (144)
T 1sz9_A 23 SRPIITTLTKLAE--ENISCAQYFVDAIESRIEKCM--PKQKLYAFYALDSICKNVGSPYTIYFSRN 85 (144)
T ss_dssp CHHHHHHHHHHHH--HTGGGHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHTCTTHHHHHHTT
T ss_pred cHhHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCC--HhhHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4444444555555 356788899999999997542 45556689999999999877776665543
No 26
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.03 E-value=36 Score=22.25 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=24.6
Q ss_pred cchHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC
Q psy4488 101 NYSDAQVKVREATSNDPWGPSSSLMSEIADLTYN 134 (194)
Q Consensus 101 ~~t~~E~~VreATsnd~wGps~~~m~eIa~~T~~ 134 (194)
.+|+.++.+.|+.-..+--|+.....+||..+--
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l 46 (70)
T 2dmu_A 13 IFTDEQLEALENLFQETKYPDVGTREQLARKVHL 46 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCC
Confidence 3577777776666555556899999999988743
No 27
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=31.48 E-value=73 Score=21.33 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=27.5
Q ss_pred cchHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCh
Q psy4488 101 NYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNV 135 (194)
Q Consensus 101 ~~t~~E~~VreATsnd~wGps~~~m~eIa~~T~~~ 135 (194)
.+|+.++.+.|..-..+--|+.....+||..+--.
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~ 47 (80)
T 2cue_A 13 SFTQEQIEALEKEFERTHYPDVFARERLAAKIDLP 47 (80)
T ss_dssp CSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCC
T ss_pred ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCC
Confidence 36888888888887776678999999999887443
No 28
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=30.53 E-value=45 Score=21.77 Aligned_cols=33 Identities=15% Similarity=0.022 Sum_probs=25.7
Q ss_pred cchHHHHHHHHhhcCCCCCCCHHHHHHHHHHcc
Q psy4488 101 NYSDAQVKVREATSNDPWGPSSSLMSEIADLTY 133 (194)
Q Consensus 101 ~~t~~E~~VreATsnd~wGps~~~m~eIa~~T~ 133 (194)
.+|+.++.+.|+.-..+--|+.....+||..+-
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~ 45 (70)
T 2e1o_A 13 RFSNDQTIELEKKFETQKYLSPPERKRLAKMLQ 45 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHC
Confidence 367888888777766666789999999998874
No 29
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=27.54 E-value=57 Score=21.27 Aligned_cols=35 Identities=17% Similarity=0.011 Sum_probs=24.8
Q ss_pred cchHHHHHHHHhhcCCCCCCCHHHHHHHHHHccCh
Q psy4488 101 NYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNV 135 (194)
Q Consensus 101 ~~t~~E~~VreATsnd~wGps~~~m~eIa~~T~~~ 135 (194)
.+|+.++.+.|..-..+--|+.....+||..+--.
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~ 47 (70)
T 2cra_A 13 PYSKGQLRELEREYAANKFITKDKRRKISAATSLS 47 (70)
T ss_dssp CSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCC
Confidence 45777777766665554568999999999887433
No 30
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=24.18 E-value=70 Score=20.70 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=25.2
Q ss_pred cchHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC
Q psy4488 101 NYSDAQVKVREATSNDPWGPSSSLMSEIADLTYN 134 (194)
Q Consensus 101 ~~t~~E~~VreATsnd~wGps~~~m~eIa~~T~~ 134 (194)
.+|+.++.+.|..-..+--|+.....+||..+--
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l 46 (70)
T 2da2_A 13 RFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNL 46 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC
Confidence 3677777777776655557899999999988743
No 31
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.86 E-value=79 Score=21.10 Aligned_cols=34 Identities=24% Similarity=0.147 Sum_probs=25.1
Q ss_pred cchHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC
Q psy4488 101 NYSDAQVKVREATSNDPWGPSSSLMSEIADLTYN 134 (194)
Q Consensus 101 ~~t~~E~~VreATsnd~wGps~~~m~eIa~~T~~ 134 (194)
.+|+.++.+.|..-..+--|+.....+||..+--
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l 46 (80)
T 2dms_A 13 TFTRAQLDVLEALFAKTRYPDIFMREEVALKINL 46 (80)
T ss_dssp SCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCc
Confidence 3577777777776655556899999999988743
No 32
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=21.69 E-value=54 Score=21.26 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=23.8
Q ss_pred cchHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC
Q psy4488 101 NYSDAQVKVREATSNDPWGPSSSLMSEIADLTYN 134 (194)
Q Consensus 101 ~~t~~E~~VreATsnd~wGps~~~m~eIa~~T~~ 134 (194)
.+|+.++.+.|+.-..+--|+.....+||..+--
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l 46 (70)
T 2da1_A 13 RITDDQLRVLRQYFDINNSPSEEQIKEMADKSGL 46 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 3577777777766555556777888889887643
No 33
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.59 E-value=81 Score=20.95 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=24.6
Q ss_pred cchHHHHHHHHhhcCCCCCCCHHHHHHHHHHccC
Q psy4488 101 NYSDAQVKVREATSNDPWGPSSSLMSEIADLTYN 134 (194)
Q Consensus 101 ~~t~~E~~VreATsnd~wGps~~~m~eIa~~T~~ 134 (194)
.+|+.++.+.|+.-..+--|+.....+||..+--
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l 46 (80)
T 2dmq_A 13 SFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGL 46 (80)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCC
Confidence 3577777776666555556899999999988743
No 34
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=21.37 E-value=71 Score=23.27 Aligned_cols=42 Identities=21% Similarity=0.409 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHccChhhHHHHHHHHHHHhCc---------CCCchHHHHHHHH
Q psy4488 120 PSSSLMSEIADLTYNVVAFTEIMAMIWKRLND---------SGKNWRHVYKALS 164 (194)
Q Consensus 120 ps~~~m~eIa~~T~~~~~~~~Im~~l~kRL~~---------~~k~WR~vyKsL~ 164 (194)
++..+|..|=.. ++ .+.+-.+-||+++-. .+..||.+|-.|.
T Consensus 25 ~tp~QL~~IE~~--nP-~L~~dTdeLWk~~c~rdF~~~~p~e~esWRelY~rl~ 75 (97)
T 4hfx_A 25 CTPDQLYRIEEY--NH-VLIEETDQLWKVHCHRDFKEERPEEYESWREMYLRLQ 75 (97)
T ss_dssp CCHHHHHHHHTC---------CCHHHHHHHC----CCSCCCSSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHh--Cc-ccchhhHHHHHHHHHhHCcccCCCCCCCHHHHHHHHH
Confidence 466666666543 23 555566789998753 3688999997664
Done!