RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4488
(194 letters)
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Length = 148
Score = 129 bits (326), Expect = 6e-39
Identities = 74/110 (67%), Positives = 93/110 (84%)
Query: 84 IQEGVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMA 143
+ + LRR +KN+ HNYS+A++KVREATSNDPWGPSSSLMSEIADLTYNVVAF+EIM+
Sbjct: 3 SRMSTSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMS 62
Query: 144 MIWKRLNDSGKNWRHVYKALSLLEYLIKTGSDKVTRIGGIFTHLIKTRSD 193
MIWKRLND GKNWRHVYKA++L+EYLIKTGS++V++ + ++T D
Sbjct: 63 MIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKD 112
Score = 73.8 bits (181), Expect = 3e-17
Identities = 35/53 (66%), Positives = 42/53 (79%), Gaps = 1/53 (1%)
Query: 1 VAFQCKENIFLIQTLRDFQYTEE-GKDQGFNVREKAKALATLLGDEERLRNER 52
V+ QCKEN++ +QTL+DFQY + GKDQG NVREKAK L LL DE+RLR ER
Sbjct: 96 VSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREER 148
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus}
SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Length = 144
Score = 125 bits (315), Expect = 2e-37
Identities = 67/80 (83%), Positives = 79/80 (98%)
Query: 100 HNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLNDSGKNWRHV 159
HNYS+A++KVREATSNDPWGPSSSLMSEIADLTYNVVAF+EIM+MIWKRLND GKNWRHV
Sbjct: 1 HNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHV 60
Query: 160 YKALSLLEYLIKTGSDKVTR 179
YKA++L+EYLIKTGS++V++
Sbjct: 61 YKAMTLMEYLIKTGSERVSQ 80
Score = 70.4 bits (172), Expect = 5e-16
Identities = 41/67 (61%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
Query: 1 VAFQCKENIFLIQTLRDFQYTEE-GKDQGFNVREKAKALATLLGDEERLRNERARQLKAR 59
V+ QCKEN++ +QTL+DFQY + GKDQG NVREKAK L LL DE+RLR ERA LK +
Sbjct: 78 VSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREERAHALKTK 137
Query: 60 ERFARSA 66
E+ A++A
Sbjct: 138 EKLAQTA 144
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A
{Homo sapiens} PDB: 2qy7_A 2v8s_E
Length = 176
Score = 120 bits (303), Expect = 4e-35
Identities = 48/107 (44%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 88 VAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWK 147
V L N+ NYS+ + KVREAT++DPWGPS LM EIA T+ F E+M M+W
Sbjct: 18 VRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWS 77
Query: 148 R-LNDSGKNWRHVYKALSLLEYLIKTGSDKVTRIGGIFTHLIKTRSD 193
R L D+ KNWR VYK+L LL YLI+ GS++V + +++ +
Sbjct: 78 RMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTSAREHIYDLRSLEN 124
Score = 68.5 bits (167), Expect = 6e-15
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 1 VAFQCKENIFLIQTLRDFQYTEE-GKDQGFNVREKAKALATLLGDEERLRNERARQLKAR 59
V +E+I+ +++L ++ + +E GKDQG N+R+K K L D++RLR ER + K +
Sbjct: 108 VVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDDRLREERKKAKKNK 167
Query: 60 ERFARSASSGFGSE 73
+++ G S+
Sbjct: 168 DKY-----VGVSSD 176
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces
cerevisiae} PDB: 3onl_A
Length = 150
Score = 117 bits (294), Expect = 4e-34
Identities = 42/98 (42%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Query: 94 NIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLND-S 152
++ ++ NY++ + KVREAT+N+PWG SS+LM +I+ TYN EI++MI++R + +
Sbjct: 1 SLMSVDPNYTEMEGKVREATNNEPWGASSTLMDQISQGTYNFREREEILSMIFRRFTEKA 60
Query: 153 GKNWRHVYKALSLLEYLIKTGSDKVTRIGGIFTHLIKT 190
G WR +YKAL LL+YLIK GS++ +LI+
Sbjct: 61 GSEWRQIYKALQLLDYLIKHGSERFIDDTRNSINLIRI 98
Score = 64.3 bits (156), Expect = 1e-13
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 1 VAFQCKENIFLIQTLRDFQYTEE-GKDQGFNVREKAKALATLLGDEERLRNERARQLKAR 59
+ +I LI+ L F Y + G+DQG NVR + KAL LL D+ ++R ER + +
Sbjct: 85 FIDDTRNSINLIRILETFHYIDSQGRDQGINVRTRVKALIELLSDDNKIRAERKKARETA 144
Query: 60 ERFA 63
+++
Sbjct: 145 KKYK 148
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis,
endobrevin, synaptobrevin, VAMP2, VAMP3, AP180,
membrane, adaptor protein; 1.70A {Rattus norvegicus}
PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Length = 271
Score = 83.3 bits (205), Expect = 9e-20
Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 92 RRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNV-VAFTEIMAMIWKRLN 150
R + S V +AT+++ GP + + T + V ++ +++R
Sbjct: 16 RITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT 75
Query: 151 DSGKNWRHVYKALSLLEYLIKTGSDKV 177
+S +W V+K+L +L+ G+++
Sbjct: 76 NS--SWVVVFKSLITTHHLMVYGNERF 100
Score = 31.3 bits (70), Expect = 0.17
Identities = 10/80 (12%), Positives = 26/80 (32%), Gaps = 9/80 (11%)
Query: 3 FQCKENIFLIQTLRDFQYTEEGKDQGFNVREKAKALATLLGDEERLRNERARQLKARERF 62
+ +F + D + +G D +R ++ L E+ + RQ+
Sbjct: 104 LASRNTLFNLSNFLD-KSGLQGYDMSTFIRRYSRYL------NEKAVSY--RQVAFDFTK 154
Query: 63 ARSASSGFGSEGSAMRRQRE 82
+ + G + + +
Sbjct: 155 VKRGADGVMRTMNTEKLLKT 174
>3zym_A Phosphatidylinositol-binding clathrin assembly PR
vesicle-associated membrane protein...; endocytosis,
synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A
{Rattus norvegicus}
Length = 310
Score = 80.3 bits (197), Expect = 2e-18
Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 92 RRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNV-VAFTEIMAMIWKRLN 150
R + S V +AT+++ GP + + T + V ++ +++R
Sbjct: 16 RITAAQHSVTGSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTT 75
Query: 151 DSGKNWRHVYKALSLLEYLIKTGSDKV 177
+S +W V+K+L +L+ G+++
Sbjct: 76 NS--SWVVVFKSLITTHHLMVYGNERF 100
Score = 29.5 bits (65), Expect = 0.60
Identities = 7/65 (10%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 3 FQCKENIFLIQTLRDFQYTEEGKDQGFNVREKAKALATLLGDEERLRNERARQLKARERF 62
+ +F + D + +G D +R ++ L ++ + + + +
Sbjct: 104 LASRNTLFNLSNFLD-KSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKVKRGADGV 162
Query: 63 ARSAS 67
R+ +
Sbjct: 163 MRTMN 167
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha
helices repeats, coiled-coil, endocytosis/exocytosis
complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2
a.118.9.3
Length = 299
Score = 69.5 bits (169), Expect = 1e-14
Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Query: 92 RRNIKNLAHNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNV-VAFTEIMAMIWKRLN 150
R + V +AT+ + GP + + V+ + ++ +R
Sbjct: 11 RLLAARHSLAGQGLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQ 70
Query: 151 DSGKNWRHVYKALSLLEYLIKTGSDKV 177
++ NW VYK+L +L+ G+++
Sbjct: 71 NA--NWVVVYKSLITTHHLMAYGNERF 95
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Length = 140
Score = 67.0 bits (163), Expect = 1e-14
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 109 VREATSNDPWGPSSSLMSEIADLTY--NVVAFTEIMAMIWKRLNDSGKNWRHVYKALSLL 166
+ TS++ + EI DL +V E I KRL++ + KAL L+
Sbjct: 16 IDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVK--QKALRLI 73
Query: 167 EYLIKTGSDKVTRI 180
+Y + + R
Sbjct: 74 KYAVGKSGSEFRRE 87
Score = 36.5 bits (84), Expect = 0.002
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 4 QCKENIFLIQTLRDFQYTEE---GKDQGFNVREKAKALATLLGDEERLRNERA 53
+ + N ++ L ++ + G VRE A + + EE +
Sbjct: 87 EMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIFSEENGSGPSS 139
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast
structural genom consortium, NESG, super-helical
protein; 3.00A {Homo sapiens}
Length = 152
Score = 49.6 bits (118), Expect = 4e-08
Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Query: 103 SDAQVKVREATSNDPWGPSSSLMSEIADL-TYNVVAFTEIMAMIWKRLNDSGKNWRHVYK 161
+ + +AT I D+ + + + KR++ N + +
Sbjct: 15 TSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRIS-KNYNHKEIQL 73
Query: 162 ALSLLEYLIKTGSDKV 177
LSL++ ++
Sbjct: 74 TLSLIDMCVQNCGPSF 89
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.002
Identities = 39/224 (17%), Positives = 66/224 (29%), Gaps = 73/224 (32%)
Query: 2 AF--QCKENIFLIQTLRDFQYTE------------EGKDQGFNVREKAKALATLLG-DEE 46
AF CK L+ T R Q T+ + E L L +
Sbjct: 261 AFNLSCK---ILLTT-RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 47 RLRNERARQLKARERFARSAS----SGFGSEGSAMRRQREDIQEGVAGLRRNIKNLAHNY 102
L E + + S E I++G+A N H
Sbjct: 317 DLPRE-----------VLTTNPRRLSIIA----------ESIRDGLA----TWDNWKHVN 351
Query: 103 SDAQVKVREATSN--DPWGPSSSLMSEIADLTYNVVAF-------TEIMAMIWKRLNDSG 153
D + E++ N +P +E + + F T ++++IW +
Sbjct: 352 CDKLTTIIESSLNVLEP--------AEYRKMFDRLSVFPPSAHIPTILLSLIW--FDVIK 401
Query: 154 KNWRHVYKAL---SLLEYLIKTGSDKVTRIGGIFTHLIKTRSDK 194
+ V L SL+E K + I I+ L ++
Sbjct: 402 SDVMVVVNKLHKYSLVE---KQPKESTISIPSIYLELKVKLENE 442
Score = 28.3 bits (62), Expect = 1.7
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 10/69 (14%)
Query: 106 QVKVREATSNDPWGPSSSLMSEIADL-TY------NVVAFTEIMAMIWKRLNDSGKNWRH 158
+ K+R ++ W S S+++ + L Y N + ++ I L +N
Sbjct: 504 EQKIRHDST--AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL-I 560
Query: 159 VYKALSLLE 167
K LL
Sbjct: 561 CSKYTDLLR 569
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis
complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Length = 157
Score = 35.7 bits (82), Expect = 0.003
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 103 SDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFT-EIMAMIWKRLNDSGKNWRHVYK 161
S ++ +AT +L EI D+ + + + KR+ + KN+ V
Sbjct: 15 SPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGN-KNFHEVML 73
Query: 162 ALSLLEYLIKTGSDKVTR 179
AL++LE +K +
Sbjct: 74 ALTVLETCVKNCGHRFHV 91
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation
factor binding protein GGA1, VHS, acidic- cluster
dileucine signal, sorla; 1.70A {Homo sapiens} PDB:
3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A
1jwg_A* 1py1_A*
Length = 149
Score = 34.5 bits (79), Expect = 0.008
Identities = 7/71 (9%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 108 KVREATSNDPWGPSSSLMSEIADL-TYNVVAFTEIMAMIWKRLNDSGKNWRHVYKALSLL 166
++ AT+ + ++ + + ++ ++ +AL++L
Sbjct: 15 RINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQS--PQEWEAIQALTVL 72
Query: 167 EYLIKTGSDKV 177
E +K+ +
Sbjct: 73 ETCMKSCGKRF 83
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.010
Identities = 42/242 (17%), Positives = 67/242 (27%), Gaps = 90/242 (37%)
Query: 9 IFLIQTLRDFQYTEEGKDQGFNVREKAKALATLLGDEERLRNERARQLKAR--------E 60
I +IQ Y K GF E L G + L + A E
Sbjct: 241 IGVIQLA---HYVVTAKLLGFTPGELRSYLKGATGHSQGL-------VTAVAIAETDSWE 290
Query: 61 RFARSASSG----F--GSEG----------SAMRRQREDIQEG-------VAGLRRN--- 94
F S F G ++ + EG ++ L +
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 95 --IK--NLAHNYSDAQVKVREATSNDPW-----GPSSSL--------------------- 124
+ N +H + QV++ + N GP SL
Sbjct: 351 DYVNKTN-SHLPAGKQVEI--SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 125 -MSE---IADLTYNVVA--F-TEIMA----MIWKRLNDSGKNWRHVYKALSLLEYLIKTG 173
SE + VA F + ++ +I K L + ++ K + + Y G
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA--KDIQIPVYDTFDG 465
Query: 174 SD 175
SD
Sbjct: 466 SD 467
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein;
HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP:
e.57.1.1
Length = 392
Score = 29.6 bits (66), Expect = 0.56
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 4 QCKENIFLIQTLRDFQYTEEGKDQGFNVREKAKALATLLGDEERLRNERARQLKA 58
+E F R+F Y+EE DQ + A + E+ LR + R K
Sbjct: 249 AAREKKF---IPREFNYSEELIDQLKKEHDSAAS------LEQSLRVQLVRLAKT 294
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate;
signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Length = 226
Score = 28.9 bits (64), Expect = 0.99
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 103 SDAQVKVREATSNDPWGPSSSLMSEIADL-TYNVVAFTEIMAMIWKRLNDSGKNWRHVYK 161
+ + +ATS + +I DL + I K++ND KN
Sbjct: 7 GTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVND--KNPHVALY 64
Query: 162 ALSLLEYLIKTGSDKV 177
AL ++E ++K V
Sbjct: 65 ALEVMESVVKNCGQTV 80
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside
mannosyltransferase...; GT-B fold,
alpha-mannosyltransferase; HET: GDD; 2.00A
{Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Length = 394
Score = 27.7 bits (62), Expect = 2.3
Identities = 6/30 (20%), Positives = 9/30 (30%), Gaps = 3/30 (10%)
Query: 35 AKALATLLGDEERLRN--ERARQLKARERF 62
++ L LL D R R +
Sbjct: 335 SELLIELLDDPIRRAAMGAAGRA-HVEAEW 363
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus
horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Length = 416
Score = 27.8 bits (62), Expect = 2.6
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 30 NVREKAKALATLLGDEERLRN--ERARQLKARERF 62
+ E + + LL E + +A++ + R+ F
Sbjct: 365 DANEAVEVVLYLLKHPEVSKEMGAKAKE-RVRKNF 398
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide,
carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Length = 394
Score = 26.5 bits (59), Expect = 6.2
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 30 NVREKAKALATLLGDEERLRN--ERARQLKARERF 62
+ A LL DEE RN ERAR+ E+F
Sbjct: 336 DTTGVADQAIQLLKDEELHRNMGERARE-SVYEQF 369
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain,
kinase and RNAse function, ATP binding ssRNA
dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo
sapiens}
Length = 432
Score = 26.7 bits (59), Expect = 6.3
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 77 MRRQREDIQEGVAGLRRNIKNLAHNYSDAQVKVREATSNDP 117
+R+ R V L R ++N H+Y + +VRE P
Sbjct: 341 LRKFRTYKGGSVRDLLRAMRNKKHHYRELPAEVRETLGTLP 381
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide
transport, major facilitator SUPE transporter, MFS;
3.30A {Streptococcus thermophilus}
Length = 491
Score = 26.2 bits (58), Expect = 7.4
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 135 VVAFTEIMAMIWKRLNDSGKNWRHVYK-ALSLL 166
++ +T A +W K A+ L+
Sbjct: 332 IMLYTPFFAWLWTAW--KKNQPSSPTKFAVGLM 362
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor,
virulence factor; 2.40A {Yersinia pseudotuberculosis}
Length = 238
Score = 25.8 bits (57), Expect = 9.9
Identities = 5/28 (17%), Positives = 8/28 (28%), Gaps = 1/28 (3%)
Query: 42 LGDEERLRNERARQLKARERFARSASSG 69
+G + + L R S G
Sbjct: 1 MGSSHHH-HHHSSGLVPRGSHMYSNMEG 27
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.372
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,922,587
Number of extensions: 169484
Number of successful extensions: 456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 440
Number of HSP's successfully gapped: 37
Length of query: 194
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 106
Effective length of database: 4,244,745
Effective search space: 449942970
Effective search space used: 449942970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)