RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4488
(194 letters)
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 144
Score = 108 bits (270), Expect = 6e-31
Identities = 69/94 (73%), Positives = 84/94 (89%)
Query: 100 HNYSDAQVKVREATSNDPWGPSSSLMSEIADLTYNVVAFTEIMAMIWKRLNDSGKNWRHV 159
HNYS+A++KVREATSNDPWGPSSSLMSEIADLTYNVVAF+EIM+MIWKRLND GKNWRHV
Sbjct: 1 HNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHV 60
Query: 160 YKALSLLEYLIKTGSDKVTRIGGIFTHLIKTRSD 193
YKA++L+EYLIKTGS++V++ + ++T D
Sbjct: 61 YKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKD 94
Score = 73.4 bits (180), Expect = 2e-17
Identities = 40/64 (62%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 4 QCKENIFLIQTLRDFQYTEE-GKDQGFNVREKAKALATLLGDEERLRNERARQLKARERF 62
QCKEN++ +QTL+DFQY + GKDQG NVREKAK L LL DE+RLR ERA LK +E+
Sbjct: 81 QCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREERAHALKTKEKL 140
Query: 63 ARSA 66
A++A
Sbjct: 141 AQTA 144
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 140
Score = 83.4 bits (206), Expect = 2e-21
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Query: 106 QVKVREATSNDPWGPSSSLMSEIADLTYNV-VAFTEIMAMIWKRLNDSGKNWRHVYKALS 164
V +AT+ + GP + + V+ + ++ +R + NW VYK+L
Sbjct: 4 AKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQN--ANWVVVYKSLI 61
Query: 165 LLEYLIKTGSDKVTRIGGIFTHLIKTRSDK 194
+L+ G+++ + S
Sbjct: 62 TTHHLMAYGNERFMQYLASSNSTFNLSSFL 91
Score = 35.7 bits (82), Expect = 0.001
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 16/61 (26%)
Query: 3 FQCKENIFLIQTLRDFQYT----------EEGKDQGFNVREKAKALATLLGDEERLRNER 52
+ F + + D G D +R AK L E+ + R
Sbjct: 78 LASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYL------NEKSLSYR 131
Query: 53 A 53
A
Sbjct: 132 A 132
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid
leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 131
Score = 79.6 bits (196), Expect = 5e-20
Identities = 15/76 (19%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 103 SDAQVKVREATSNDPWGPSSSLMSEIADLTYNV-VAFTEIMAMIWKRLNDSGKNWRHVYK 161
S V +AT+++ GP + + T + V ++ +++R + +W V+K
Sbjct: 2 SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTN--SSWVVVFK 59
Query: 162 ALSLLEYLIKTGSDKV 177
+L +L+ G+++
Sbjct: 60 SLITTHHLMVYGNERF 75
Score = 35.3 bits (81), Expect = 0.001
Identities = 6/52 (11%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 3 FQCKENIFLIQTLRDFQYTEEGKDQGFNVREKAKALATLLGDEERLRNERAR 54
+ +F + D +G D +R ++ L ++ + +
Sbjct: 79 LASRNTLFNLSNFLDKSG-LQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTK 129
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 153
Score = 34.1 bits (78), Expect = 0.005
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 103 SDAQVKVREATSNDPWGPSSSLMSEIADL-TYNVVAFTEIMAMIWKRLNDSGKNWRHVYK 161
S ++ +AT +L EI D+ + + + KR+ KN+ V
Sbjct: 11 SPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIV-GNKNFHEVML 69
Query: 162 ALSLLEYLIKTGSDKV 177
AL++LE +K +
Sbjct: 70 ALTVLETCVKNCGHRF 85
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 151
Score = 29.4 bits (66), Expect = 0.18
Identities = 8/71 (11%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 108 KVREATSNDPWGPSSSLMSEIADL-TYNVVAFTEIMAMIWKRLNDSGKNWRHVYKALSLL 166
+ +AT+ + D + + ++ ++ +AL++L
Sbjct: 6 WLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQ--SPQEWEALQALTVL 63
Query: 167 EYLIKTGSDKV 177
E +K +
Sbjct: 64 EACMKNCGRRF 74
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 29.4 bits (66), Expect = 0.26
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 4 QCKENIFLIQTLRDFQYTEEGKDQGFNVREKAKALATLLGDEERLRNERARQLKA 58
+E F R+F Y+EE DQ + A + E+ LR + R K
Sbjct: 245 AAREKKF---IPREFNYSEELIDQLKKEHDSAAS------LEQSLRVQLVRLAKT 290
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 27.1 bits (60), Expect = 0.84
Identities = 9/73 (12%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Query: 106 QVKVREATSNDPWGPSSSLMSEIADL-TYNVVAFTEIMAMIWKRLNDSGKNWRHVYKALS 164
++ + +AT S + + + T ++ ++ + AL+
Sbjct: 3 ELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQS--PQEKEALYALT 60
Query: 165 LLEYLIKTGSDKV 177
+LE + +K
Sbjct: 61 VLEMCMNHCGEKF 73
>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY
{Escherichia coli [TaxId: 562]}
Length = 361
Score = 27.1 bits (58), Expect = 1.4
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 51 ERARQLKARERFARSASSGFGSEGSAMRR-----QREDIQEGVAGLRRNIKNL 98
+ L +E+ A +G EG R R +++GVAGL I+ +
Sbjct: 308 ALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAV 360
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 26.0 bits (57), Expect = 1.8
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 38 LATLLGDEERLRNERARQLKARERFARSASSGFGSEGSAMRRQREDIQEGVAGLRRNIKN 97
L L+ D ++ N+ +LK+ E+ + SA R R+ + L R
Sbjct: 50 LEELMSDIKKTANKVRSKLKSIEQSIEQEEGL--NRSSADLRIRKTQ---HSTLSRKFVE 104
Query: 98 LAHNYSDAQVKVRE 111
+ Y+ Q RE
Sbjct: 105 VMSEYNATQSDYRE 118
>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}
Length = 394
Score = 26.7 bits (57), Expect = 2.1
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 53 ARQLKARERFARSASSGFGSEGSAMRR-----QREDIQEGVAGLRRNIKNL 98
+ + + FG G R IQE + L + +K+L
Sbjct: 343 EEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDL 393
>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium
lapideum [TaxId: 32060]}
Length = 388
Score = 26.3 bits (57), Expect = 2.5
Identities = 8/52 (15%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 51 ERARQLKARERFARSASSGFGSEGSAMR----RQREDIQEGVAGLRRNIKNL 98
+ +L + + A + FG++ +R + I+ G+ L + + +
Sbjct: 337 DFCSELLDQHQVATVPGAAFGADD-CIRLSYATDLDTIKRGMERLEKFLHGI 387
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 139
Score = 25.5 bits (55), Expect = 3.0
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 48 LRNERARQLKAR---ERFARSASSGFGSEGSAMRRQREDIQEGVAGLRRN-IKNLAHNYS 103
+RNE Q AR E FAR + F ++ + +I+ V+ N I + +N
Sbjct: 1 MRNEMHLQFSARSENESFARVTVAAFVAQLDPTMDELTEIKTVVSEAVTNAIIHGYNNDP 60
Query: 104 DAQVKVR 110
+ V +
Sbjct: 61 NGIVSIS 67
>d1qr0a1 d.150.1.1 (A:1-101) 4'-Phosphopantetheinyl transferase
SFP {Bacillus subtilis [TaxId: 1423]}
Length = 101
Score = 24.9 bits (54), Expect = 3.3
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 32 REKAKALATLLGDEERLRNERARQLKARERF 62
+E+ + T + E+R + R + R
Sbjct: 14 QEENERFMTFISPEKREKCRRFYHKEDAHRT 44
>d2i0ka1 d.58.32.3 (A:274-613) Cholesterol oxidase {Brevibacterium
sterolicum [TaxId: 1702]}
Length = 340
Score = 25.3 bits (55), Expect = 5.0
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 114 SNDPWGPSSSLMSEIADLTYNVVA 137
+ND WG S + I T +
Sbjct: 136 ANDIWGWSKDVQFYIKATTLRLTE 159
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli
[TaxId: 562]}
Length = 223
Score = 24.6 bits (52), Expect = 8.6
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 18 FQYTEEGKDQGFNVREKAKALATLLG 43
F++ + GF+V + A+A L
Sbjct: 13 FEFKQGDLYVGFDV-DLWAAIAKELK 37
>d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate
synthase {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 410
Score = 24.8 bits (54), Expect = 9.4
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 151 DSGKNWRHVYKALSLLEYLIKT 172
+ + + Y L+ L Y +K
Sbjct: 346 EDAGKFENFYPVLTFLSYWLKA 367
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.131 0.372
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 687,784
Number of extensions: 30268
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 25
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)