BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4489
(72 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BB9|A Chain A, Crystal Structure Of The Sh3 Domain From Rat Amphiphysin
2
Length = 115
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPEEQ 48
+ YT D DEL G+++ V+ + +PEEQ
Sbjct: 51 HDYTATDTDELQLKAGDVVLVIPFQNPEEQ 80
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 32.3 bits (72), Expect = 0.065, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPE 46
Y YT ++ DEL+F G+II V+ +DP+
Sbjct: 9 YDYTAQNDDELAFSKGQIINVLNKEDPD 36
>pdb|1MV3|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 213
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPEEQ 48
+ YT D DEL G+++ V+ + +PEEQ
Sbjct: 149 HDYTATDTDELQLKAGDVVLVIPFQNPEEQ 178
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 32.3 bits (72), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 8 ALNLIRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPE 46
A + + + Y Y + DELSF G++I V+ DDP+
Sbjct: 30 AFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPD 68
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 32.0 bits (71), Expect = 0.093, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPE 46
Y Y + DELSF G++I V+ DDP+
Sbjct: 25 YDYAANNEDELSFSKGQLINVMNKDDPD 52
>pdb|1MUZ|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
pdb|1MV0|B Chain B, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 81
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPEEQ 48
+ YT D DEL G+++ V+ + +PEEQ
Sbjct: 17 HDYTATDTDELQLKAGDVVLVIPFQNPEEQ 46
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 31.6 bits (70), Expect = 0.10, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 15 LYFTYKYTREDVDELSFDVGEIIRVVEYDDPEE 47
+Y + Y+ E DELSF GE + V+ D PEE
Sbjct: 157 VYALWDYSAEFGDELSFREGESVTVLRRDGPEE 189
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDD 44
Y YT++ DELSF G II V++ +D
Sbjct: 24 YDYTKDKEDELSFQEGAIIYVIKKND 49
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYD 43
Y Y +D DELSF+ +II +++ D
Sbjct: 12 YAYDAQDTDELSFNANDIIDIIKED 36
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 9 LNLIRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQ 48
L +R LY + D ++L F GEI+ ++E PEEQ
Sbjct: 125 LEYVRTLY---DFPGNDAEDLPFKKGEILVIIE--KPEEQ 159
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 9 LNLIRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQ 48
L +R LY + D ++L F GEI+ ++E PEEQ
Sbjct: 125 LEYVRTLY---DFPGNDAEDLPFKKGEILVIIE--KPEEQ 159
>pdb|2RB7|A Chain A, Crystal Structure Of Co-Catalytic Metallopeptidase
(Yp_387682.1) From Desulfovibrio Desulfuricans G20 At
1.60 A Resolution
pdb|2RB7|B Chain B, Crystal Structure Of Co-Catalytic Metallopeptidase
(Yp_387682.1) From Desulfovibrio Desulfuricans G20 At
1.60 A Resolution
Length = 364
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 37 IRVVEYDDPEEQVDKIFSLRTDTVEM 62
IRV E+DDP +DKI + TV +
Sbjct: 251 IRVTEHDDPGALIDKIRKTVSGTVSI 276
>pdb|2NAP|A Chain A, Dissimilatory Nitrate Reductase (Nap) From Desulfovibrio
Desulfuricans
pdb|2JIM|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2JIP|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2JIR|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2V45|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
Length = 723
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 22 TREDVDELSFDVGEIIR----VVEYDDPEEQVDKIFSLRTDTV 60
TR D EL V ++ R V + DP++ V+K+F TD V
Sbjct: 665 TRRDAMELPARVSDVCRPGLIAVPFFDPKKLVNKLFLDATDPV 707
>pdb|2JIO|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2JIQ|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
pdb|2V3V|A Chain A, A New Catalytic Mechanism Of Periplasmic Nitrate Reductase
From Desulfovibrio Desulfuricans Atcc 27774 From
Crystallographic And Epr Data And Based On Detailed
Analysis Of The Sixth Ligand
Length = 723
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 22 TREDVDELSFDVGEIIR----VVEYDDPEEQVDKIFSLRTDTV 60
TR D EL V ++ R V + DP++ V+K+F TD V
Sbjct: 665 TRRDAMELPARVSDVCRPGLIAVPFFDPKKLVNKLFLDATDPV 707
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDD 44
Y Y + DE+S D G+II V+ DD
Sbjct: 7 YAYEAQGDDEISIDPGDIITVIRGDD 32
>pdb|3UPU|A Chain A, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
pdb|3UPU|B Chain B, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
pdb|3UPU|C Chain C, Crystal Structure Of The T4 Phage Sf1b Helicase Dda
Length = 459
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 15 LYFTYKYTREDVDELSFDVGEIIRVVE 41
L+ TYK + V E+ F+ G+++R++E
Sbjct: 295 LFKTYKIDGKPVSEIIFNNGQLVRIIE 321
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 13 RLLYFTYKYTREDVDELSFDVGEIIRVVEYDDP 45
R + Y + + +EL+F GEII V++ DP
Sbjct: 18 RKVRAIYDFEAAEDNELTFKAGEIITVLDDSDP 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.143 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,149,789
Number of Sequences: 62578
Number of extensions: 73315
Number of successful extensions: 293
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 275
Number of HSP's gapped (non-prelim): 22
length of query: 72
length of database: 14,973,337
effective HSP length: 42
effective length of query: 30
effective length of database: 12,345,061
effective search space: 370351830
effective search space used: 370351830
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)