Query psy4489
Match_columns 72
No_of_seqs 114 out of 462
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 18:24:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4489.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4489hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14604 SH3_9: Variant SH3 do 99.5 9E-15 2E-19 83.2 3.5 42 17-63 1-42 (49)
2 PF00018 SH3_1: SH3 domain; I 99.4 7.8E-14 1.7E-18 78.0 3.6 39 16-59 1-39 (48)
3 KOG2199|consensus 99.4 4.7E-14 1E-18 110.5 1.8 51 6-61 209-259 (462)
4 PF07653 SH3_2: Variant SH3 do 99.4 4.2E-13 9.2E-18 76.8 4.1 45 14-63 1-46 (55)
5 KOG1029|consensus 99.3 2E-12 4.3E-17 107.9 3.2 46 11-61 1052-1097(1118)
6 KOG2070|consensus 99.2 7.9E-12 1.7E-16 100.6 3.9 46 13-63 18-63 (661)
7 cd00174 SH3 Src homology 3 dom 99.2 2.7E-11 5.8E-16 65.6 4.7 45 14-63 1-46 (54)
8 smart00326 SH3 Src homology 3 99.2 3.6E-11 7.9E-16 65.5 5.1 46 13-63 3-49 (58)
9 KOG2856|consensus 99.2 6E-12 1.3E-16 98.5 1.9 44 12-59 414-457 (472)
10 KOG3771|consensus 99.2 1.2E-11 2.7E-16 97.5 2.7 59 7-67 395-453 (460)
11 KOG0162|consensus 99.1 3.3E-11 7.2E-16 100.5 3.5 48 11-63 1050-1097(1106)
12 KOG1118|consensus 99.0 9.3E-11 2E-15 90.0 2.2 44 12-60 306-349 (366)
13 KOG4348|consensus 98.9 6.8E-10 1.5E-14 88.9 3.7 47 13-62 262-308 (627)
14 KOG2996|consensus 98.9 1.1E-09 2.3E-14 90.0 4.2 55 7-64 800-854 (865)
15 KOG2546|consensus 98.9 2.9E-10 6.2E-15 89.9 0.4 50 7-61 418-467 (483)
16 KOG0515|consensus 98.9 7.6E-10 1.6E-14 90.1 2.7 48 14-63 685-732 (752)
17 KOG4348|consensus 98.9 3.5E-10 7.5E-15 90.5 0.4 45 12-61 100-144 (627)
18 KOG4225|consensus 98.9 1.5E-09 3.3E-14 86.0 3.1 45 11-60 431-475 (489)
19 KOG1029|consensus 98.8 4.1E-09 8.8E-14 88.5 4.5 51 10-63 691-741 (1118)
20 KOG4225|consensus 98.6 4.7E-08 1E-12 77.7 3.4 47 11-62 229-275 (489)
21 KOG3655|consensus 98.5 2.8E-08 6E-13 79.1 1.3 43 13-60 428-470 (484)
22 KOG1702|consensus 98.5 7.4E-08 1.6E-12 71.3 2.7 42 13-59 208-249 (264)
23 KOG1264|consensus 98.5 5.8E-08 1.2E-12 82.3 2.0 43 12-59 774-816 (1267)
24 KOG4226|consensus 98.5 1.4E-07 3E-12 72.5 3.6 44 15-63 110-153 (379)
25 KOG4226|consensus 98.4 1.9E-07 4.1E-12 71.7 3.3 46 11-59 190-235 (379)
26 KOG3601|consensus 98.1 1.5E-06 3.3E-11 63.7 1.6 51 6-61 157-207 (222)
27 KOG3875|consensus 98.1 5.7E-07 1.2E-11 69.4 -0.7 46 12-57 268-313 (362)
28 KOG2222|consensus 97.9 3.9E-06 8.4E-11 68.8 0.7 47 13-64 549-595 (848)
29 KOG1843|consensus 97.9 8.8E-06 1.9E-10 64.6 2.5 46 14-62 418-463 (473)
30 KOG4792|consensus 97.8 1.2E-05 2.6E-10 60.5 2.3 41 13-58 125-165 (293)
31 KOG0609|consensus 97.7 2.1E-05 4.6E-10 63.6 2.9 42 13-59 215-263 (542)
32 KOG3632|consensus 97.4 0.00013 2.9E-09 63.1 3.7 48 11-62 1137-1192(1335)
33 KOG3523|consensus 97.3 7.6E-05 1.6E-09 61.7 0.3 46 13-63 609-656 (695)
34 KOG4429|consensus 97.1 0.00027 5.8E-09 55.1 2.2 41 15-60 366-406 (421)
35 KOG4278|consensus 97.0 0.00089 1.9E-08 56.9 4.1 46 14-63 92-137 (1157)
36 KOG4575|consensus 96.8 0.0014 3E-08 55.0 3.7 47 7-59 3-49 (874)
37 KOG1451|consensus 96.8 0.0014 3.1E-08 54.7 3.6 50 9-62 753-802 (812)
38 KOG3725|consensus 96.5 0.0012 2.7E-08 50.8 1.5 44 13-59 318-361 (375)
39 KOG2528|consensus 96.5 0.0012 2.5E-08 53.1 1.2 43 13-59 3-45 (490)
40 KOG4773|consensus 96.0 0.00064 1.4E-08 53.3 -2.2 49 10-63 173-221 (386)
41 KOG3601|consensus 95.8 0.0015 3.3E-08 48.1 -1.0 44 15-62 3-46 (222)
42 KOG3565|consensus 95.6 0.0035 7.7E-08 51.6 0.2 44 9-56 575-618 (640)
43 KOG3632|consensus 95.6 0.0067 1.4E-07 53.0 1.8 46 13-62 1245-1297(1335)
44 KOG0197|consensus 95.3 0.014 3.1E-07 46.8 2.8 41 12-57 11-52 (468)
45 KOG3557|consensus 94.5 0.011 2.4E-07 49.4 0.3 38 14-57 502-539 (721)
46 KOG0199|consensus 92.9 0.11 2.3E-06 44.9 3.2 38 15-56 377-414 (1039)
47 KOG3775|consensus 91.3 0.12 2.6E-06 41.5 1.7 39 15-58 265-303 (482)
48 smart00743 Agenet Tudor-like d 90.6 0.56 1.2E-05 26.6 3.7 28 30-62 2-29 (61)
49 KOG4792|consensus 87.9 0.56 1.2E-05 35.7 2.9 44 13-61 228-273 (293)
50 KOG3812|consensus 86.3 0.45 9.9E-06 38.1 1.8 45 8-57 54-105 (475)
51 PF11302 DUF3104: Protein of u 85.6 1.2 2.6E-05 28.0 3.1 29 29-57 4-33 (75)
52 PF06347 SH3_4: Bacterial SH3 78.7 6.1 0.00013 21.8 4.1 28 30-63 20-47 (55)
53 PF05641 Agenet: Agenet domain 77.5 2.9 6.2E-05 24.6 2.6 27 31-59 1-27 (68)
54 PF07828 PA-IL: PA-IL-like pro 76.3 1.3 2.9E-05 30.1 1.0 20 27-54 16-35 (121)
55 KOG3580|consensus 73.5 4.8 0.0001 34.7 3.7 58 2-71 494-551 (1027)
56 PRK03187 tgl transglutaminase; 68.1 10 0.00023 28.9 4.2 37 17-56 146-189 (272)
57 KOG3705|consensus 67.3 8.1 0.00018 31.8 3.7 27 14-40 511-537 (580)
58 COG0186 RpsQ Ribosomal protein 66.3 11 0.00023 24.3 3.5 34 7-41 33-66 (87)
59 PRK10884 SH3 domain-containing 63.8 12 0.00027 26.8 3.8 30 30-63 49-79 (206)
60 PF13621 Cupin_8: Cupin-like d 56.2 5.9 0.00013 26.7 1.0 23 27-58 209-231 (251)
61 smart00287 SH3b Bacterial SH3 50.9 22 0.00048 19.4 2.7 29 30-63 26-55 (63)
62 smart00739 KOW KOW (Kyprides, 49.6 14 0.00031 17.3 1.5 12 30-41 1-12 (28)
63 PF08239 SH3_3: Bacterial SH3 45.8 20 0.00044 19.2 1.9 30 30-63 18-48 (55)
64 PF12158 DUF3592: Protein of u 44.1 52 0.0011 20.6 3.9 11 31-41 92-102 (148)
65 PF10447 EXOSC1: Exosome compo 41.3 15 0.00033 22.9 1.1 10 29-38 67-76 (82)
66 KOG2996|consensus 40.0 16 0.00034 31.5 1.3 43 14-60 606-654 (865)
67 PF01472 PUA: PUA domain; Int 39.9 26 0.00056 20.6 1.9 13 30-42 30-42 (74)
68 KOG4384|consensus 39.8 16 0.00035 28.9 1.2 47 9-60 133-181 (361)
69 PF03712 Cu2_monoox_C: Copper 39.8 17 0.00036 24.6 1.2 32 4-39 66-97 (156)
70 TIGR03630 arch_S17P archaeal r 39.1 54 0.0012 21.5 3.5 34 8-41 53-86 (102)
71 TIGR03635 S17_bact 30S ribosom 36.8 57 0.0012 19.8 3.1 32 9-41 28-59 (71)
72 PF11132 SplA: Transcriptional 35.5 34 0.00074 21.6 2.0 14 30-43 5-18 (75)
73 PRK08572 rps17p 30S ribosomal 35.2 64 0.0014 21.3 3.4 33 9-41 56-88 (108)
74 KOG1740|consensus 32.6 31 0.00067 23.1 1.5 25 14-39 34-58 (107)
75 COG3097 Uncharacterized protei 32.4 35 0.00075 22.7 1.7 19 24-42 26-44 (106)
76 PRK05610 rpsQ 30S ribosomal pr 30.7 80 0.0017 19.8 3.1 32 9-41 33-64 (84)
77 smart00333 TUDOR Tudor domain. 30.4 81 0.0017 16.9 2.8 26 30-61 2-27 (57)
78 KOG2130|consensus 29.8 47 0.001 26.6 2.4 24 27-59 263-286 (407)
79 KOG0040|consensus 29.7 3.3 7.1E-05 38.8 -4.4 44 14-62 970-1013(2399)
80 cd06206 bifunctional_CYPOR The 28.6 39 0.00084 25.5 1.7 19 27-45 26-44 (384)
81 PF01191 RNA_pol_Rpb5_C: RNA p 28.6 39 0.00084 20.9 1.4 16 28-43 46-61 (74)
82 PRK06033 hypothetical protein; 28.2 43 0.00093 20.7 1.6 13 27-39 24-36 (83)
83 KOG1769|consensus 27.5 56 0.0012 21.5 2.1 28 14-41 60-91 (99)
84 PF09926 DUF2158: Uncharacteri 27.3 47 0.001 19.2 1.5 11 31-41 1-11 (53)
85 PTZ00241 40S ribosomal protein 25.9 1.5E+02 0.0032 21.0 4.1 34 8-41 94-127 (158)
86 COG3103 SH3 domain protein [Si 25.7 1.3E+02 0.0028 21.8 3.9 26 30-59 49-74 (205)
87 PF12148 DUF3590: Protein of u 25.5 99 0.0022 19.7 2.9 29 4-39 46-74 (85)
88 PF13550 Phage-tail_3: Putativ 25.3 89 0.0019 19.8 2.7 15 27-41 136-150 (164)
89 KOG0708|consensus 25.2 26 0.00057 27.6 0.3 45 10-59 64-113 (359)
90 PF01245 Ribosomal_L19: Riboso 24.9 51 0.0011 21.7 1.6 17 26-42 14-30 (113)
91 CHL00142 rps17 ribosomal prote 24.6 1.4E+02 0.0031 18.7 3.5 32 9-41 30-61 (84)
92 PRK13914 invasion associated s 24.4 79 0.0017 25.9 2.8 29 30-63 104-133 (481)
93 COG4297 Uncharacterized protei 23.7 84 0.0018 22.3 2.5 24 16-39 74-97 (163)
94 PF12736 CABIT: Cell-cycle sus 23.6 89 0.0019 22.1 2.7 32 9-40 81-122 (256)
95 KOG3409|consensus 23.4 48 0.001 24.2 1.3 13 29-41 121-135 (193)
96 KOG1708|consensus 22.6 1.5E+02 0.0032 22.3 3.7 44 25-72 67-110 (236)
97 cd01121 Sms Sms (bacterial rad 22.6 48 0.001 25.6 1.2 15 53-67 13-27 (372)
98 PF00667 FAD_binding_1: FAD bi 22.6 45 0.00099 23.1 1.0 18 28-45 39-56 (219)
99 TIGR02656 cyanin_plasto plasto 22.2 66 0.0014 19.7 1.6 17 25-41 15-31 (99)
100 PF01957 NfeD: NfeD-like C-ter 22.1 43 0.00094 21.0 0.8 19 22-42 115-133 (144)
101 COG5475 Uncharacterized small 22.0 58 0.0013 19.7 1.3 14 28-41 2-15 (60)
102 PF04014 Antitoxin-MazE: Antid 21.9 89 0.0019 16.7 1.9 15 27-41 17-31 (47)
103 PRK09570 rpoH DNA-directed RNA 21.7 94 0.002 19.5 2.2 16 28-43 49-64 (79)
104 PF13538 UvrD_C_2: UvrD-like h 21.4 59 0.0013 19.1 1.2 11 31-41 1-11 (104)
105 CHL00141 rpl24 ribosomal prote 21.3 91 0.002 19.4 2.1 15 29-43 7-21 (83)
106 PF08696 Dna2: DNA replication 21.0 74 0.0016 22.5 1.8 14 28-41 22-35 (209)
107 PF01052 SpoA: Surface present 20.8 60 0.0013 18.8 1.2 11 29-39 27-37 (77)
108 cd02791 MopB_CT_Nitrate-R-NapA 20.7 96 0.0021 18.9 2.1 20 22-41 40-59 (122)
109 PF02080 TrkA_C: TrkA-C domain 20.6 61 0.0013 17.9 1.1 16 26-41 43-58 (71)
110 PRK08433 flagellar motor switc 20.4 72 0.0016 21.0 1.6 13 27-39 49-61 (111)
111 cd06204 CYPOR NADPH cytochrome 20.2 80 0.0017 24.3 2.0 19 27-45 34-52 (416)
No 1
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.52 E-value=9e-15 Score=83.20 Aligned_cols=42 Identities=33% Similarity=0.428 Sum_probs=35.2
Q ss_pred EceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCcccc
Q psy4489 17 FTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEMW 63 (72)
Q Consensus 17 AlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~w 63 (72)
|+|+|+|+++|||||++||+|.|++. .++|||.|++++..+|
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~-----~~~~W~~g~~~g~~G~ 42 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEK-----SDDGWWYGRNTGRTGL 42 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEE-----SSTSEEEEEETTEEEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEe-----CCCCEEEEEECCEEEE
Confidence 79999999999999999999999974 4789999998776543
No 2
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.45 E-value=7.8e-14 Score=77.96 Aligned_cols=39 Identities=38% Similarity=0.624 Sum_probs=34.8
Q ss_pred EEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCC
Q psy4489 16 YFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDT 59 (72)
Q Consensus 16 rAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~ 59 (72)
+|+|+|+|+.++||+|++||+|.|+++. ++|||.|+..+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~-----~~~Ww~~~~~~ 39 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKS-----DDGWWKVRNES 39 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEES-----SSSEEEEEETT
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEec-----CCCEEEEEECC
Confidence 6999999999999999999999999853 56999999975
No 3
>KOG2199|consensus
Probab=99.42 E-value=4.7e-14 Score=110.50 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=44.1
Q ss_pred eeccCceEEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCcc
Q psy4489 6 LSALNLIRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVE 61 (72)
Q Consensus 6 ~~~~~~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~ 61 (72)
+++....++|||||||+|.+++||||++||||+|++.. +..||+|++.+..
T Consensus 209 l~s~~~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s-----~~~WWKG~~~~~~ 259 (462)
T KOG2199|consen 209 LNSQTVVRKVRALYDFEAAEDNELSFKAGDIITVLDDS-----DPNWWKGENHRGI 259 (462)
T ss_pred ccCCccchhhhhhhcccccCCCccceecCcEEEEcccC-----CcchhccccCCcc
Confidence 34557789999999999999999999999999999743 5679999998754
No 4
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.39 E-value=4.2e-13 Score=76.78 Aligned_cols=45 Identities=31% Similarity=0.493 Sum_probs=37.7
Q ss_pred EEEEceeccCCCCCcccCCCCCEEEEe-ecCCCcccccCccEEEeCCcccc
Q psy4489 14 LLYFTYKYTREDVDELSFDVGEIIRVV-EYDDPEEQVDKIFSLRTDTVEMW 63 (72)
Q Consensus 14 ~vrAlYdY~a~~~DELsF~~GDiI~Vi-~~~dpe~~d~GWw~G~l~~~~~w 63 (72)
+++|++||.+++++||||++||+|.|+ +. .++|||.|+.++..+|
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~-----~~~~ww~~~~~g~~G~ 46 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEK-----DDDGWWLGENNGRRGW 46 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEE-----CSTSEEEEEETTEEEE
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEee-----cCCCEEEEEECCcEEE
Confidence 589999999999999999999999999 43 3669999999877765
No 5
>KOG1029|consensus
Probab=99.27 E-value=2e-12 Score=107.89 Aligned_cols=46 Identities=28% Similarity=0.408 Sum_probs=41.1
Q ss_pred ceEEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCcc
Q psy4489 11 LIRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVE 61 (72)
Q Consensus 11 ~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~ 61 (72)
.+.+|.|+|||+|+++|||+|++||||.|+.++ ++.||+|.+||..
T Consensus 1052 ~v~qviamYdY~AqndDELsF~kgdiI~Vlnkd-----epeWW~Ge~ng~s 1097 (1118)
T KOG1029|consen 1052 PVCQVIAMYDYEAQNDDELSFKKGDIINVLNKD-----EPEWWSGERNGKS 1097 (1118)
T ss_pred ccceeEEeeccccCCcccccccCCCEEEecCCC-----ChhhhcccccCcc
Confidence 478899999999999999999999999999876 4559999999754
No 6
>KOG2070|consensus
Probab=99.22 E-value=7.9e-12 Score=100.61 Aligned_cols=46 Identities=20% Similarity=0.383 Sum_probs=42.5
Q ss_pred EEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCcccc
Q psy4489 13 RLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEMW 63 (72)
Q Consensus 13 ~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~w 63 (72)
..|||-|.|...+.|||||.+||||+|... ++.|||.|+++|+.+|
T Consensus 18 LvvrAkf~F~gsNnDELsf~KgDvItVTq~-----eeGGWWEGTlng~TGW 63 (661)
T KOG2070|consen 18 LVVRAKFNFQGSNNDELSFSKGDVITVTQV-----EEGGWWEGTLNGRTGW 63 (661)
T ss_pred eEEEEEeecccCCCceeccccCCEEEEEEe-----ccCcceeccccCccCc
Confidence 458999999999999999999999999873 5789999999999999
No 7
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.21 E-value=2.7e-11 Score=65.58 Aligned_cols=45 Identities=33% Similarity=0.380 Sum_probs=38.4
Q ss_pred EEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCC-cccc
Q psy4489 14 LLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDT-VEMW 63 (72)
Q Consensus 14 ~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~-~~~w 63 (72)
+++|+|+|.++.++||+|++||+|.+++. .++|||.++..+ ..+|
T Consensus 1 ~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~-----~~~~w~~~~~~~~~~G~ 46 (54)
T cd00174 1 YVRALYDYDARDPDELSFKKGDIIEVLEK-----SDDGWWEGRLLGGKRGL 46 (54)
T ss_pred CEEEEEeeCCCCCCCCCCCCCCEEEEEEc-----CCCCeEEEEECCCCEEE
Confidence 36899999999999999999999999974 367999999876 4443
No 8
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.21 E-value=3.6e-11 Score=65.51 Aligned_cols=46 Identities=37% Similarity=0.432 Sum_probs=39.1
Q ss_pred EEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeC-Ccccc
Q psy4489 13 RLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTD-TVEMW 63 (72)
Q Consensus 13 ~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~-~~~~w 63 (72)
..++|+|+|.+..++||+|++||+|.+++.. +.|||.|++. +.++|
T Consensus 3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~-----~~~w~~~~~~~~~~G~ 49 (58)
T smart00326 3 PQVRALYDYTAQDPDELSFKKGDIITVLEKS-----DDGWWKGRLGRGKEGL 49 (58)
T ss_pred cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcC-----CCCeEEEEeCCCCEEE
Confidence 4689999999999999999999999999742 6899999987 44443
No 9
>KOG2856|consensus
Probab=99.19 E-value=6e-12 Score=98.54 Aligned_cols=44 Identities=30% Similarity=0.413 Sum_probs=39.3
Q ss_pred eEEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCC
Q psy4489 12 IRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDT 59 (72)
Q Consensus 12 l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~ 59 (72)
..+|||||||.++..|||||++||.|++++ ++++.|||+|+++.
T Consensus 414 ~v~vraLYDY~gqE~DElsfkaGd~l~kl~----eeDeqGWC~Grl~~ 457 (472)
T KOG2856|consen 414 FVRVRALYDYAGQEGDELSFKAGDELEKLE----EEDEQGWCKGRLDS 457 (472)
T ss_pred eeeEEeeeccCcccccchhhccccHhhhcC----CccccccccccccC
Confidence 367999999999999999999999999996 34577999999983
No 10
>KOG3771|consensus
Probab=99.17 E-value=1.2e-11 Score=97.46 Aligned_cols=59 Identities=27% Similarity=0.460 Sum_probs=53.4
Q ss_pred eccCceEEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCccccceEE
Q psy4489 7 SALNLIRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEMWDVIV 67 (72)
Q Consensus 7 ~~~~~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~w~~~~ 67 (72)
-+|+++++|+|+|+|+|++.|||||+.||+|.|+..++++++++||.+|.... .|+-.|
T Consensus 395 ~~p~~~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~--~~~~~~ 453 (460)
T KOG3771|consen 395 LPPGFLYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKES--DWNGLF 453 (460)
T ss_pred CCCCCccceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhccc--ccccce
Confidence 37899999999999999999999999999999999999999999999998865 666544
No 11
>KOG0162|consensus
Probab=99.13 E-value=3.3e-11 Score=100.52 Aligned_cols=48 Identities=27% Similarity=0.332 Sum_probs=43.7
Q ss_pred ceEEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCcccc
Q psy4489 11 LIRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEMW 63 (72)
Q Consensus 11 ~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~w 63 (72)
.-..|+|+|+|.+++.|||||++||+|.++.. +.+|||.|++++.++|
T Consensus 1050 k~p~~~A~Y~y~gq~~dEls~~~~diIei~~e-----dpSGWw~gk~~~keG~ 1097 (1106)
T KOG0162|consen 1050 KNPVCEALYDYPGQDVDELSFKKGDIIEIMRE-----DPSGWWLGKLNGKEGL 1097 (1106)
T ss_pred CCcceeeeccCCCCCcccccccCCCEEEEecc-----CCCcchhhccCCcccc
Confidence 34679999999999999999999999999973 4789999999999998
No 12
>KOG1118|consensus
Probab=99.03 E-value=9.3e-11 Score=90.04 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=40.4
Q ss_pred eEEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCc
Q psy4489 12 IRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTV 60 (72)
Q Consensus 12 l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~ 60 (72)
...|||+|||+++++.||.|++||+|+|++ ++|++||.|++.|.
T Consensus 306 ~p~cralYdFepenEgEL~fkeGDlI~l~~-----QIdenWyeG~~~g~ 349 (366)
T KOG1118|consen 306 QPCCRALYDFEPENEGELDFKEGDLITLTN-----QIDENWYEGEKHGE 349 (366)
T ss_pred chhheeeeccCCCCCCccCcccCceeeehh-----hcCcchhhheecCc
Confidence 356999999999999999999999999985 78999999999875
No 13
>KOG4348|consensus
Probab=98.93 E-value=6.8e-10 Score=88.89 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=41.9
Q ss_pred EEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCccc
Q psy4489 13 RLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEM 62 (72)
Q Consensus 13 ~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~ 62 (72)
..||.+|.|++|++|||+|++||+|..|.++ -.|.|||.|+|+|.++
T Consensus 262 eycrv~F~Ye~qndDELt~KEgdil~lItK~---cgdaGWweGELnGk~G 308 (627)
T KOG4348|consen 262 EYCRVKFVYEPQNDDELTLKEGDILILITKN---CGDAGWWEGELNGKKG 308 (627)
T ss_pred hheeeeeeecCCCccceeeccccEEEEeccc---ccccceeeeeecCccc
Confidence 4599999999999999999999999999863 4588999999998764
No 14
>KOG2996|consensus
Probab=98.91 E-value=1.1e-09 Score=90.03 Aligned_cols=55 Identities=13% Similarity=0.253 Sum_probs=49.8
Q ss_pred eccCceEEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCccccc
Q psy4489 7 SALNLIRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEMWD 64 (72)
Q Consensus 7 ~~~~~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~w~ 64 (72)
-||.++.+++|-|||-|.+-.||||++||+|.++.+. .+|.|||+|+.+|+.+|=
T Consensus 800 ~s~~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~---g~d~GWWkGevngrvGwF 854 (865)
T KOG2996|consen 800 LSPKVVGTAVARYDFCARDMRELSLKEGDVVKIYDKV---GEDQGWWKGEVNGRVGWF 854 (865)
T ss_pred cCcceeeeeeeccccCCCchhhcccccCCEEEEehhc---cccCceecceecCccccc
Confidence 4688999999999999999999999999999998764 457899999999999993
No 15
>KOG2546|consensus
Probab=98.90 E-value=2.9e-10 Score=89.89 Aligned_cols=50 Identities=28% Similarity=0.389 Sum_probs=45.6
Q ss_pred eccCceEEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCcc
Q psy4489 7 SALNLIRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVE 61 (72)
Q Consensus 7 ~~~~~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~ 61 (72)
++.++|.+|+|+|||.++.+|||||.+|-+|.|+.++ ++|||.|.++++.
T Consensus 418 ~p~syLEkVv~iydy~~~KddeLsf~E~ailyv~kkn-----ddgw~EgV~~~VT 467 (483)
T KOG2546|consen 418 VPTSYLEKVVAIYDYTADKDDELSFAEGAILYVLKKN-----DDGWYEGVQDGVT 467 (483)
T ss_pred ccHHHHHHHHhhcccccccccccccccccEEEEEEec-----CCcchhheecCcc
Confidence 4557899999999999999999999999999999974 7999999999974
No 16
>KOG0515|consensus
Probab=98.89 E-value=7.6e-10 Score=90.14 Aligned_cols=48 Identities=29% Similarity=0.444 Sum_probs=41.7
Q ss_pred EEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCcccc
Q psy4489 14 LLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEMW 63 (72)
Q Consensus 14 ~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~w 63 (72)
.+.|||||+|+.+|||||++||.++||+++|++ +-.||..++++.++.
T Consensus 685 ~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~--eteWWwa~lng~eGy 732 (752)
T KOG0515|consen 685 VVYALWDYEAQFEDELSFDEGDELTVIRRDDEV--ETEWWWARLNGEEGY 732 (752)
T ss_pred eeEEeecccccccccccccCCceeEEEecCCcc--hhhhhhHhhcCcccc
Confidence 589999999999999999999999999997654 557888889987763
No 17
>KOG4348|consensus
Probab=98.88 E-value=3.5e-10 Score=90.53 Aligned_cols=45 Identities=24% Similarity=0.447 Sum_probs=40.1
Q ss_pred eEEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCcc
Q psy4489 12 IRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVE 61 (72)
Q Consensus 12 l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~ 61 (72)
-+.|+++|.|-+|++|||+|+.||||.++. +-++|||.|.|++-.
T Consensus 100 ~r~c~v~f~Y~pqndDELelkVGDiIeli~-----eVEeGWw~G~Lngk~ 144 (627)
T KOG4348|consen 100 ARICVVTFAYSPQNDDELELKVGDIIELIS-----EVEEGWWKGKLNGKV 144 (627)
T ss_pred ceeEEEEEeecCCCCceeeeeeccHHHhhh-----HhhhhhhhceecCcc
Confidence 456999999999999999999999999986 468999999999743
No 18
>KOG4225|consensus
Probab=98.85 E-value=1.5e-09 Score=85.98 Aligned_cols=45 Identities=27% Similarity=0.270 Sum_probs=38.8
Q ss_pred ceEEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCc
Q psy4489 11 LIRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTV 60 (72)
Q Consensus 11 ~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~ 60 (72)
-..+++|||.|.++++|||.|.+||||.|+++ .|+||+.|+-+++
T Consensus 431 ~~l~yrAly~Y~pqnedeLEl~egDii~VmeK-----cddgWfvGts~rt 475 (489)
T KOG4225|consen 431 EPLKYRALYSYRPQNEDELELREGDIIDVMEK-----CDDGWFVGTSRRT 475 (489)
T ss_pred CcccceeccccCCCCchhheeccCCEEeeeec-----ccCcceeccceec
Confidence 34458999999999999999999999999974 7899999965443
No 19
>KOG1029|consensus
Probab=98.81 E-value=4.1e-09 Score=88.52 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=45.1
Q ss_pred CceEEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCcccc
Q psy4489 10 NLIRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEMW 63 (72)
Q Consensus 10 ~~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~w 63 (72)
..+.+|||||.|+|++.||+||.+||||.|-+.. .-++||..|.++|-.+|
T Consensus 691 ~~~vkyrAly~FeaRs~dEisf~pGDII~V~esq---~aEPGWlaGel~gktGW 741 (1118)
T KOG1029|consen 691 HDTVKYRALYPFEARSHDEISFEPGDIIIVFESQ---AAEPGWLAGELRGKTGW 741 (1118)
T ss_pred cceEEEeeecccccCCcccccccCCCEEEEehhc---cCCcccccceeccccCc
Confidence 3578999999999999999999999999996532 34789999999999998
No 20
>KOG4225|consensus
Probab=98.56 E-value=4.7e-08 Score=77.68 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=41.5
Q ss_pred ceEEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCccc
Q psy4489 11 LIRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEM 62 (72)
Q Consensus 11 ~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~ 62 (72)
....+||+|+|+|+...||+|++||||.|+.+ .|+.|..|+.+|+.+
T Consensus 229 ~~~~aralf~F~~qt~kEL~~~kGDIVyI~rk-----vD~nWyeGEhhGr~G 275 (489)
T KOG4225|consen 229 PKRAARALFDFEAQTPKELPFNKGDIVYILRK-----VDQNWYEGEHHGRVG 275 (489)
T ss_pred ccchhhheeccccCCccccccCCCCEEEEEee-----ccCceeeeeecceec
Confidence 34449999999999999999999999999984 688999999998754
No 21
>KOG3655|consensus
Probab=98.53 E-value=2.8e-08 Score=79.08 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=38.4
Q ss_pred EEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCc
Q psy4489 13 RLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTV 60 (72)
Q Consensus 13 ~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~ 60 (72)
..++|+|||+|.++.|++|.++|+|++|+ +.|+|||.|.....
T Consensus 428 q~A~A~~dyqAAddtEisf~p~d~it~Id-----~vdegww~g~~pdG 470 (484)
T KOG3655|consen 428 QTARALYDYQAADDTEISFDPPDAITLID-----QVDEGWWTGQGPDG 470 (484)
T ss_pred CCccccccccccCCcccccCCcccccccc-----ccCCccccccCCCC
Confidence 35899999999999999999999999996 56899999998553
No 22
>KOG1702|consensus
Probab=98.50 E-value=7.4e-08 Score=71.33 Aligned_cols=42 Identities=26% Similarity=0.262 Sum_probs=38.2
Q ss_pred EEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCC
Q psy4489 13 RLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDT 59 (72)
Q Consensus 13 ~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~ 59 (72)
.+.||+|||.|++.||+||.-||-|.-+. ++++||..|++.+
T Consensus 208 ktyra~ydysaqdedevsF~dgd~ivnvq-----~iddGWmygtv~r 249 (264)
T KOG1702|consen 208 KTYRAFYDYSAQDEDEVSFVDGDYIVNVQ-----SIDDGWMYGTVVR 249 (264)
T ss_pred ccchhhccCcccCcceeEEecCCeEEEEE-----eccCCceeeEEEe
Confidence 67999999999999999999999999886 5789999999864
No 23
>KOG1264|consensus
Probab=98.48 E-value=5.8e-08 Score=82.30 Aligned_cols=43 Identities=26% Similarity=0.250 Sum_probs=38.3
Q ss_pred eEEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCC
Q psy4489 12 IRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDT 59 (72)
Q Consensus 12 l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~ 59 (72)
...|+|||+|.|+.+|||||-+|-||+++++ ++.|||+|...|
T Consensus 774 ~vt~kAL~~Yka~r~DELSFpk~aiItnv~k-----eeg~wWrGdYGg 816 (1267)
T KOG1264|consen 774 QVTVKALYDYKAKRSDELSFPKGAIITNVSK-----EEGGWWRGDYGG 816 (1267)
T ss_pred chhhhhhhccccCCcccccccccceeEeeec-----cCCceeeccccc
Confidence 4679999999999999999999999999986 367899998764
No 24
>KOG4226|consensus
Probab=98.47 E-value=1.4e-07 Score=72.46 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=40.5
Q ss_pred EEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCcccc
Q psy4489 15 LYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEMW 63 (72)
Q Consensus 15 vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~w 63 (72)
+..-|.|.|+.+||||+.+|+.|+|+++. .+|||+|..++..+|
T Consensus 110 AvVKf~Y~a~~eDELsLtKGtrv~vmEKs-----sDGWWrG~~ng~VGW 153 (379)
T KOG4226|consen 110 AVVKFNYVAEREDELSLTKGTRVTVMEKS-----SDGWWRGSYNGQVGW 153 (379)
T ss_pred eEEEEeeccccccccccccCcEEEEEEec-----cCcceecccCCeecc
Confidence 56669999999999999999999999864 789999999999998
No 25
>KOG4226|consensus
Probab=98.42 E-value=1.9e-07 Score=71.68 Aligned_cols=46 Identities=22% Similarity=0.453 Sum_probs=40.6
Q ss_pred ceEEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCC
Q psy4489 11 LIRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDT 59 (72)
Q Consensus 11 ~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~ 59 (72)
.|..|.|||+|.+.++.||+|++||.+.|+++. +.|+.||+.+...
T Consensus 190 vl~vVvaLYsFsssndeELsFeKGerleivd~P---e~DPdWwkarn~~ 235 (379)
T KOG4226|consen 190 VLHVVVALYSFSSSNDEELSFEKGERLEIVDKP---ENDPDWWKARNAR 235 (379)
T ss_pred EEEEEEEEecccCCChhhcccccCceeEeccCC---CCCchHHhhcccC
Confidence 677899999999999999999999999999864 4678899988754
No 26
>KOG3601|consensus
Probab=98.08 E-value=1.5e-06 Score=63.72 Aligned_cols=51 Identities=14% Similarity=0.093 Sum_probs=44.7
Q ss_pred eeccCceEEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCcc
Q psy4489 6 LSALNLIRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVE 61 (72)
Q Consensus 6 ~~~~~~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~ 61 (72)
++++..-+.++|+|+|+++.+.||.|+.||+|+|++.+ +.-||.|.+.|..
T Consensus 157 ~~~~~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~s-----s~~ww~Gs~lg~a 207 (222)
T KOG3601|consen 157 LPPAPTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSS-----SPFWWFGSKLGRA 207 (222)
T ss_pred CCCCccchhhhhcCCCCCCCchhhccccCCcceeecCC-----CcchhhccccCce
Confidence 56667788899999999999999999999999999754 6789999987743
No 27
>KOG3875|consensus
Probab=98.07 E-value=5.7e-07 Score=69.40 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=37.5
Q ss_pred eEEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEe
Q psy4489 12 IRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRT 57 (72)
Q Consensus 12 l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l 57 (72)
...+||+|||.|+++.||||++||++.|..++++-..+..||.+..
T Consensus 268 ~~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat 313 (362)
T KOG3875|consen 268 HEFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLAT 313 (362)
T ss_pred HHHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeee
Confidence 3679999999999999999999999999988766555544555544
No 28
>KOG2222|consensus
Probab=97.87 E-value=3.9e-06 Score=68.78 Aligned_cols=47 Identities=23% Similarity=0.384 Sum_probs=41.9
Q ss_pred EEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCccccc
Q psy4489 13 RLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEMWD 64 (72)
Q Consensus 13 ~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~w~ 64 (72)
.+++||+||..+++|||.|++.|||+++. +-|+-=|.|++||-++|=
T Consensus 549 krakal~df~r~dddelgfrkndiitiis-----ekdehcwvgelnglrgwf 595 (848)
T KOG2222|consen 549 KRAKALHDFAREDDDELGFRKNDIITIIS-----EKDEHCWVGELNGLRGWF 595 (848)
T ss_pred HHHHHHhhhhhccccccccccccEEEEee-----cCCcceeeeccccccccc
Confidence 45899999999999999999999999996 346778899999999993
No 29
>KOG1843|consensus
Probab=97.86 E-value=8.8e-06 Score=64.65 Aligned_cols=46 Identities=24% Similarity=0.425 Sum_probs=39.9
Q ss_pred EEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCccc
Q psy4489 14 LLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEM 62 (72)
Q Consensus 14 ~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~ 62 (72)
.++|+|+|..+....|+|++||||+++++++ -..-||.|+.++.+.
T Consensus 418 ~a~a~ysfage~~GDl~f~kgDii~il~ks~---s~~dwwtgr~~~~eg 463 (473)
T KOG1843|consen 418 IATALYSFAGEQPGDLSFQKGDIITILKKSD---SANDWWTGRGNGYEG 463 (473)
T ss_pred eeeeeehhccCCCCCcccccCceEEEecCCc---chhhHHHhhcccccc
Confidence 5899999999999999999999999998753 345799999987653
No 30
>KOG4792|consensus
Probab=97.80 E-value=1.2e-05 Score=60.46 Aligned_cols=41 Identities=20% Similarity=0.477 Sum_probs=35.9
Q ss_pred EEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeC
Q psy4489 13 RLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTD 58 (72)
Q Consensus 13 ~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~ 58 (72)
..++|+|||.+.+.+.|.|++|+++.+++++ ++.||..+..
T Consensus 125 ~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~-----eeqWW~Arns 165 (293)
T KOG4792|consen 125 EYVRALFDFNGNDEEDLPFKKGEILRIRDKP-----EEQWWNARNS 165 (293)
T ss_pred hheeeeeccCCCccccCCcccCcEEEEecCc-----HHHhhhhhcc
Confidence 4589999999999999999999999999864 5669998764
No 31
>KOG0609|consensus
Probab=97.73 E-value=2.1e-05 Score=63.64 Aligned_cols=42 Identities=19% Similarity=0.351 Sum_probs=37.1
Q ss_pred EEEEEceeccCCCCCc-------ccCCCCCEEEEeecCCCcccccCccEEEeCC
Q psy4489 13 RLLYFTYKYTREDVDE-------LSFDVGEIIRVVEYDDPEEQVDKIFSLRTDT 59 (72)
Q Consensus 13 ~~vrAlYdY~a~~~DE-------LsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~ 59 (72)
.++||+|||.+.+++- |+|++|||+.|+.+ .|..||+++..+
T Consensus 215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~q-----dD~nWWQA~~~~ 263 (542)
T KOG0609|consen 215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQ-----DDPNWWQARRVG 263 (542)
T ss_pred eeehhhcCcCcccCCcccchhcCCcccccceeeeccC-----CCcchhhhhccc
Confidence 6899999999998874 89999999999975 478899999875
No 32
>KOG3632|consensus
Probab=97.43 E-value=0.00013 Score=63.11 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=40.0
Q ss_pred ceEEEEEceeccCC--------CCCcccCCCCCEEEEeecCCCcccccCccEEEeCCccc
Q psy4489 11 LIRLLYFTYKYTRE--------DVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEM 62 (72)
Q Consensus 11 ~l~~vrAlYdY~a~--------~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~ 62 (72)
.-+.++|||||.+- ...||+|++|+||.|+. +++++|..+|++++..+
T Consensus 1137 parifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~G----DkDadgFY~GE~ngr~G 1192 (1335)
T KOG3632|consen 1137 PARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLG----DKDADGFYMGELNGRRG 1192 (1335)
T ss_pred cceeeEeeeccCccccCCCCChhhhccccccCcEEEEec----cccccceeecccccccc
Confidence 34678999999874 45799999999999986 35688999999998764
No 33
>KOG3523|consensus
Probab=97.25 E-value=7.6e-05 Score=61.66 Aligned_cols=46 Identities=17% Similarity=0.348 Sum_probs=40.0
Q ss_pred EEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEe--CCcccc
Q psy4489 13 RLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRT--DTVEMW 63 (72)
Q Consensus 13 ~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l--~~~~~w 63 (72)
..|.+.+.|+|..+|||+++.+|++.|+.+ .++||..|+. +|..+|
T Consensus 609 pQv~~~~sy~a~q~Del~Le~~Dvv~v~~k-----~~DGWl~GeRl~Dge~GW 656 (695)
T KOG3523|consen 609 PQVQCVHSYKAKQPDELTLELADVVNVLQK-----TPDGWLEGERLRDGERGW 656 (695)
T ss_pred ChhheeeccccCCCceeeeehhhhhhhhhc-----CCCccccccccccCccCc
Confidence 347889999999999999999999999975 4789999976 666777
No 34
>KOG4429|consensus
Probab=97.14 E-value=0.00027 Score=55.09 Aligned_cols=41 Identities=20% Similarity=0.098 Sum_probs=36.3
Q ss_pred EEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCc
Q psy4489 15 LYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTV 60 (72)
Q Consensus 15 vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~ 60 (72)
|.|+|.|++..+|||...+||+...-++ -++|||.|++.+-
T Consensus 366 cdafYSfqarqddel~~e~gditif~Ek-----keeg~~f~rl~gd 406 (421)
T KOG4429|consen 366 CDAFYSFQARQDDELGGEIGDITIFDEK-----KEEGPTFCRLLGD 406 (421)
T ss_pred hhhhhccccccccccCCcccceeeecCc-----ccCCCceeeeccc
Confidence 8899999999999999999999887643 4789999999864
No 35
>KOG4278|consensus
Probab=96.99 E-value=0.00089 Score=56.95 Aligned_cols=46 Identities=26% Similarity=0.460 Sum_probs=41.4
Q ss_pred EEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCcccc
Q psy4489 14 LLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEMW 63 (72)
Q Consensus 14 ~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~w 63 (72)
-+.|||||.|..+..||+.+||.+.|+.++ ....||..+....++|
T Consensus 92 LFVALYDFvasGdntLSitKGeklRvLGYN----~NgEWcEartKNGqGW 137 (1157)
T KOG4278|consen 92 LFVALYDFVASGDNTLSITKGEKLRVLGYN----KNGEWCEARTKNGQGW 137 (1157)
T ss_pred eeEeeeeeeccccceeeeecCceEEEeeec----CCCcceeecccCCCcc
Confidence 578999999999999999999999999885 4567999998778888
No 36
>KOG4575|consensus
Probab=96.78 E-value=0.0014 Score=55.03 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=39.8
Q ss_pred eccCceEEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCC
Q psy4489 7 SALNLIRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDT 59 (72)
Q Consensus 7 ~~~~~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~ 59 (72)
-++..-+.|||+|-..++....|.|-+||+|++++ .++|||.|.+-+
T Consensus 3 i~~q~p~~vrA~y~w~ge~eGdl~f~egDlie~tr------I~dgkwwi~lhr 49 (874)
T KOG4575|consen 3 IPKQLPCMVRALYAWPGEREGDLKFTEGDLIEQTR------IEDGKWWILLHR 49 (874)
T ss_pred cccCCCceEEeeccCCCCcccccceecccceeEEe------eccceeeeeeee
Confidence 35666788999999999999999999999999986 577888876643
No 37
>KOG1451|consensus
Probab=96.77 E-value=0.0014 Score=54.66 Aligned_cols=50 Identities=24% Similarity=0.164 Sum_probs=42.6
Q ss_pred cCceEEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCccc
Q psy4489 9 LNLIRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEM 62 (72)
Q Consensus 9 ~~~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~ 62 (72)
+-.-++++++|...|....||+|.+|-++.-+.. .+++||..|+|+|-++
T Consensus 753 ~~~~rk~k~lyAc~a~h~selsf~~gt~f~nv~~----S~e~Gwl~GtLnGktg 802 (812)
T KOG1451|consen 753 KYLSRRVKTLYACTADHHSELSFEPGTIFTNVYE----SNEDGWLVGTLNGKTG 802 (812)
T ss_pred ccccccccceeccCCCCcccccccCcceeeeecc----cCCCCceeeecCCCcc
Confidence 3445679999999999999999999999998763 4688999999998654
No 38
>KOG3725|consensus
Probab=96.51 E-value=0.0012 Score=50.80 Aligned_cols=44 Identities=23% Similarity=0.166 Sum_probs=37.4
Q ss_pred EEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCC
Q psy4489 13 RLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDT 59 (72)
Q Consensus 13 ~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~ 59 (72)
+++|.+|||.|....|||+-+.|+|+|.... .-|..|.+|+..+
T Consensus 318 rkArVlyDYdAa~s~ElslladeiitVyslp---GMD~dwlmgErGn 361 (375)
T KOG3725|consen 318 RKARVLYDYDAALSQELSLLADEIITVYSLP---GMDADWLMGERGN 361 (375)
T ss_pred cceeeeecccccchhhhhhhhcceEEEEecC---CCChHHhhhhhcC
Confidence 5799999999999999999999999997643 2367799998654
No 39
>KOG2528|consensus
Probab=96.47 E-value=0.0012 Score=53.14 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=36.8
Q ss_pred EEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCC
Q psy4489 13 RLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDT 59 (72)
Q Consensus 13 ~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~ 59 (72)
.++||+|||.+++..|||...||++++... ..-+|||.|...+
T Consensus 3 sk~RamyDf~~E~~sElsi~~~evl~i~~e----~~~~GwLeg~Nsr 45 (490)
T KOG2528|consen 3 SKARAMYDFQSEGHSELSIWEGEVLSITSE----DVIEGWLEGSNSR 45 (490)
T ss_pred cchhhhcchhhcccccccccccceeeecCc----ccccccccCCCcc
Confidence 478999999999999999999999999852 3467999997643
No 40
>KOG4773|consensus
Probab=96.04 E-value=0.00064 Score=53.26 Aligned_cols=49 Identities=6% Similarity=0.049 Sum_probs=42.2
Q ss_pred CceEEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCcccc
Q psy4489 10 NLIRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEMW 63 (72)
Q Consensus 10 ~~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~w 63 (72)
.+..+.+|+.+|......||.|.+||++.++.+ ++.+||.|+.++-.+|
T Consensus 173 ~~~q~~~a~~df~gns~~EL~l~agdV~~~~~r-----~ek~W~~gk~R~~~g~ 221 (386)
T KOG4773|consen 173 MAAQRAEASFDFPGNSKLELNLVAGDVEFLLSR-----DEKYWLLGKVRGLTGY 221 (386)
T ss_pred hhhHHHHhhccCCCCccceeeeehhhHHHHHhh-----cccceeeeeecccccc
Confidence 344568899999999999999999999999875 4789999998887666
No 41
>KOG3601|consensus
Probab=95.82 E-value=0.0015 Score=48.12 Aligned_cols=44 Identities=20% Similarity=0.202 Sum_probs=37.2
Q ss_pred EEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCccc
Q psy4489 15 LYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEM 62 (72)
Q Consensus 15 vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~ 62 (72)
+.|+|++.+...|||+|.+||.+.++.. +++..|.+.++++.++
T Consensus 3 a~a~n~f~a~i~dELsFlkg~~lk~l~~----~d~~nw~~ael~g~~g 46 (222)
T KOG3601|consen 3 AVAKNDFLAGIRDELSFLKGDNLKILNM----EDDINWYKAELDGPEG 46 (222)
T ss_pred hhhhhhhhhcCcccceeecCCceEecch----HHhhhhhhHhhcCccc
Confidence 5689999999999999999999999864 3456799888887765
No 42
>KOG3565|consensus
Probab=95.59 E-value=0.0035 Score=51.57 Aligned_cols=44 Identities=30% Similarity=0.330 Sum_probs=39.0
Q ss_pred cCceEEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEE
Q psy4489 9 LNLIRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLR 56 (72)
Q Consensus 9 ~~~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~ 56 (72)
.+..+.+.|+|.|+++++++++..+|+++.+++.+ ..+||=+|+
T Consensus 575 ~p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~----~g~gwt~~r 618 (640)
T KOG3565|consen 575 SPPIRTSKALYAFEGQSEGTISIDPGEILQVIEED----KGDGWTRGR 618 (640)
T ss_pred CCCccceecccCcCCCCCCccccCcchhHHHHhhc----ccCCCCCCC
Confidence 35567899999999999999999999999999864 468999998
No 43
>KOG3632|consensus
Probab=95.56 E-value=0.0067 Score=53.03 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=38.6
Q ss_pred EEEEEceeccCCCC-------CcccCCCCCEEEEeecCCCcccccCccEEEeCCccc
Q psy4489 13 RLLYFTYKYTREDV-------DELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEM 62 (72)
Q Consensus 13 ~~vrAlYdY~a~~~-------DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~ 62 (72)
....|+|||.+++. -||.|..||||+|..+. +++|-..|.+++.++
T Consensus 1245 ~~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~m----dddgfyyGelngqkg 1297 (1335)
T KOG3632|consen 1245 RQMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKM----DDDGFYYGELNGQKG 1297 (1335)
T ss_pred hhhhhhhcCCcccCCCCcccceeeccccCCeEEeeccc----cCCcccccccCCccC
Confidence 35789999998854 58999999999998764 488999999998654
No 44
>KOG0197|consensus
Probab=95.32 E-value=0.014 Score=46.75 Aligned_cols=41 Identities=20% Similarity=0.422 Sum_probs=32.5
Q ss_pred eEEEEEceeccCCCCCcccCCCCCE-EEEeecCCCcccccCccEEEe
Q psy4489 12 IRLLYFTYKYTREDVDELSFDVGEI-IRVVEYDDPEEQVDKIFSLRT 57 (72)
Q Consensus 12 l~~vrAlYdY~a~~~DELsF~~GDi-I~Vi~~~dpe~~d~GWw~G~l 57 (72)
...+.|+|+|++..+.+|+|.+||. -.+++. .+..||+.+.
T Consensus 11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~-----~~~~Ww~ar~ 52 (468)
T KOG0197|consen 11 ETIVVALYDYASRTPEDLSFRKGDVVLILLET-----TNGDWWRARS 52 (468)
T ss_pred cceEEEeccccCCCccccccccCceEEEeecc-----CChhHHHHHH
Confidence 4578999999999999999999999 555542 3567987543
No 45
>KOG3557|consensus
Probab=94.52 E-value=0.011 Score=49.38 Aligned_cols=38 Identities=21% Similarity=0.486 Sum_probs=33.2
Q ss_pred EEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEe
Q psy4489 14 LLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRT 57 (72)
Q Consensus 14 ~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l 57 (72)
.+..+|||.|++..||+..+||+..|++ +.-+||+-+.
T Consensus 502 ~~~~~Ydf~arNs~ELsV~k~E~LEvl~------d~R~WW~~kn 539 (721)
T KOG3557|consen 502 WVLVLYDFQARNSSELSVKKGEVLEVLD------DGRKWWKVKN 539 (721)
T ss_pred eeeeehhhhcccchhhhhhhhhhhhhhh------ccccceeccC
Confidence 5888999999999999999999999995 2458998664
No 46
>KOG0199|consensus
Probab=92.85 E-value=0.11 Score=44.95 Aligned_cols=38 Identities=16% Similarity=0.081 Sum_probs=30.6
Q ss_pred EEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEE
Q psy4489 15 LYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLR 56 (72)
Q Consensus 15 vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~ 56 (72)
++|--.|++.++|-|.|++||.|+||+.. -+.-||+|.
T Consensus 377 ~~a~~~~d~~ep~aLh~~kgD~IvVIegs----~a~y~WfgQ 414 (1039)
T KOG0199|consen 377 AVARETYDSIEPGALHLTKGDEIVVIEGS----GAGYDWFGQ 414 (1039)
T ss_pred ceeeeeccccCCCceeeccCCeEEEEecC----Cccceeecc
Confidence 45666777889999999999999999864 235699994
No 47
>KOG3775|consensus
Probab=91.29 E-value=0.12 Score=41.54 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=33.8
Q ss_pred EEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeC
Q psy4489 15 LYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTD 58 (72)
Q Consensus 15 vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~ 58 (72)
=||++.|.++.+|||.++.||-|.|=. +.|+-|++|..=
T Consensus 265 HR~~~rFvPRHpDELeLEIgDav~Ve~-----eadD~W~~G~Nl 303 (482)
T KOG3775|consen 265 HRAVFRFVPRHPDELELEIGDAVLVEA-----EADDFWFEGFNL 303 (482)
T ss_pred hhhhhhccCCCcceeeeecCCeeEeee-----cccchhhccccc
Confidence 589999999999999999999999843 357899999763
No 48
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=90.56 E-value=0.56 Score=26.55 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=22.4
Q ss_pred cCCCCCEEEEeecCCCcccccCccEEEeCCccc
Q psy4489 30 SFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEM 62 (72)
Q Consensus 30 sF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~ 62 (72)
.|++||.|.+... .+.+||.|+.-.+..
T Consensus 2 ~~~~G~~Ve~~~~-----~~~~W~~a~V~~~~~ 29 (61)
T smart00743 2 DFKKGDRVEVFSK-----EEDSWWEAVVTKVLG 29 (61)
T ss_pred CcCCCCEEEEEEC-----CCCEEEEEEEEEECC
Confidence 5899999999863 268999998866655
No 49
>KOG4792|consensus
Probab=87.90 E-value=0.56 Score=35.70 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=34.3
Q ss_pred EEEEEceeccCC--CCCcccCCCCCEEEEeecCCCcccccCccEEEeCCcc
Q psy4489 13 RLLYFTYKYTRE--DVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVE 61 (72)
Q Consensus 13 ~~vrAlYdY~a~--~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~ 61 (72)
.++|++.+=.+. +...|.+++||+|.|..++ -.|-|.|++||..
T Consensus 228 a~Arv~q~RVPnAYDkTaL~levGdiVkVTk~n-----inGqwegElnGk~ 273 (293)
T KOG4792|consen 228 AYARVIQKRVPNAYDKTALALEVGDIVKVTKKN-----INGQWEGELNGKI 273 (293)
T ss_pred hheeeehhcCCCccChhhhhhhcCcEEEEEeec-----cCceeeeeecCcc
Confidence 346777766554 4567999999999998864 5799999999864
No 50
>KOG3812|consensus
Probab=86.31 E-value=0.45 Score=38.06 Aligned_cols=45 Identities=11% Similarity=0.122 Sum_probs=37.6
Q ss_pred ccCceEEEEEceeccCCCCCc-------ccCCCCCEEEEeecCCCcccccCccEEEe
Q psy4489 8 ALNLIRLLYFTYKYTREDVDE-------LSFDVGEIIRVVEYDDPEEQVDKIFSLRT 57 (72)
Q Consensus 8 ~~~~l~~vrAlYdY~a~~~DE-------LsF~~GDiI~Vi~~~dpe~~d~GWw~G~l 57 (72)
.+++-|.|++.-+|.+.-+++ +||++-|.|.+-++- ...||.|++
T Consensus 54 ~KpVAFAV~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKy-----nnDWWIGRl 105 (475)
T KOG3812|consen 54 RKPVAFAVRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKY-----NNDWWIGRL 105 (475)
T ss_pred cCCceEEEEeccccCCccCCCCCCCCceeeeccccceeehhhc-----ccchhHHHH
Confidence 456778899999999887665 899999999997653 567999998
No 51
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=85.64 E-value=1.2 Score=28.00 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=20.3
Q ss_pred ccCCCCCEEEEeecC-CCcccccCccEEEe
Q psy4489 29 LSFDVGEIIRVVEYD-DPEEQVDKIFSLRT 57 (72)
Q Consensus 29 LsF~~GDiI~Vi~~~-dpe~~d~GWw~G~l 57 (72)
|+.++||.+.|=... .....+..||+|..
T Consensus 4 L~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~V 33 (75)
T PF11302_consen 4 LSVKPGDTVIVQDEQEVGQKQDKDWWMGQV 33 (75)
T ss_pred cccCCCCEEEEecCccccccCCCCcEEEEE
Confidence 789999999985321 11234569999975
No 52
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=78.68 E-value=6.1 Score=21.83 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=23.6
Q ss_pred cCCCCCEEEEeecCCCcccccCccEEEeCCcccc
Q psy4489 30 SFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEMW 63 (72)
Q Consensus 30 sF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~w 63 (72)
.+++|..+.+++ ...+|++=+.++..+|
T Consensus 20 ~l~~g~~v~v~~------~~~~W~~V~~~g~~GW 47 (55)
T PF06347_consen 20 RLEPGVPVRVIE------CRGGWCKVRADGRTGW 47 (55)
T ss_pred EECCCCEEEEEE------ccCCeEEEEECCeEEe
Confidence 677899999985 3679999999988888
No 53
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=77.54 E-value=2.9 Score=24.59 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=15.4
Q ss_pred CCCCCEEEEeecCCCcccccCccEEEeCC
Q psy4489 31 FDVGEIIRVVEYDDPEEQVDKIFSLRTDT 59 (72)
Q Consensus 31 F~~GDiI~Vi~~~dpe~~d~GWw~G~l~~ 59 (72)
|++|+.|.|... .+....-|+.|++-.
T Consensus 1 F~~G~~VEV~s~--e~g~~gaWf~a~V~~ 27 (68)
T PF05641_consen 1 FKKGDEVEVSSD--EDGFRGAWFPATVLK 27 (68)
T ss_dssp --TT-EEEEEE---SBTT--EEEEEEEEE
T ss_pred CCCCCEEEEEEc--CCCCCcEEEEEEEEE
Confidence 899999999863 233455799988643
No 54
>PF07828 PA-IL: PA-IL-like protein; InterPro: IPR012905 The members of this family are similar to the galactophilic lectin-1 expressed by Pseudomonas aeruginosa (PA-IL, Q05097 from SWISSPROT). Lectins recognising specific carbohydrates found on the surface of host cells are known to be involved in the initiation of infections by this organism. The protein is thought to be organised into an extensive network of beta-sheets, as is the case with many other lectins []. ; PDB: 3ZYB_E 3ZYF_C 1L7L_A 3ZYH_A.
Probab=76.29 E-value=1.3 Score=30.12 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=14.0
Q ss_pred CcccCCCCCEEEEeecCCCcccccCccE
Q psy4489 27 DELSFDVGEIIRVVEYDDPEEQVDKIFS 54 (72)
Q Consensus 27 DELsF~~GDiI~Vi~~~dpe~~d~GWw~ 54 (72)
.-|.+++||+|+++ ..||-+
T Consensus 16 TGl~lk~GD~IsIv--------A~GW~k 35 (121)
T PF07828_consen 16 TGLILKAGDIISIV--------ASGWAK 35 (121)
T ss_dssp EEEEE-TT-EEEEE--------EEEEEE
T ss_pred eeEEEcCCCEEEEE--------Eeeeec
Confidence 45899999999998 457754
No 55
>KOG3580|consensus
Probab=73.52 E-value=4.8 Score=34.72 Aligned_cols=58 Identities=24% Similarity=0.421 Sum_probs=45.3
Q ss_pred ceeeeeccCceEEEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCccccceEEEeec
Q psy4489 2 WDVILSALNLIRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEMWDVIVIGLN 71 (72)
Q Consensus 2 ~~~~~~~~~~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~w~~~~~~~~ 71 (72)
||++-|.-+--|+.|.-|.|+.+.+.-|+|..||+..|++. .-+| + ...|=+|-||-|
T Consensus 494 r~iv~s~vGDSFyIRtHFE~Eke~P~gL~FtrGeVFrvvDT-----Ly~G----k---lG~WLAvRiG~d 551 (1027)
T KOG3580|consen 494 RDIVASGVGDSFYIRTHFECEKETPQGLAFTRGEVFRVVDT-----LYDG----K---LGNWLAVRIGND 551 (1027)
T ss_pred HHHHhccCCceeEEeeeeeecCCCCccccccccceeeeeec-----ccCC----C---CcceEEEeeccc
Confidence 56666777777899999999999999999999999999864 2233 3 336888877753
No 56
>PRK03187 tgl transglutaminase; Provisional
Probab=68.10 E-value=10 Score=28.87 Aligned_cols=37 Identities=14% Similarity=0.255 Sum_probs=24.6
Q ss_pred EceeccCCCCCcc------cCCCCCEEEEeecCCCccccc-CccEEE
Q psy4489 17 FTYKYTREDVDEL------SFDVGEIIRVVEYDDPEEQVD-KIFSLR 56 (72)
Q Consensus 17 AlYdY~a~~~DEL------sF~~GDiI~Vi~~~dpe~~d~-GWw~G~ 56 (72)
-||++.-+.+-+| .|-+||.+..= ||+-.++ .+|+|+
T Consensus 146 ~Ly~W~~d~dL~i~t~~g~~~~PGD~vYFk---NPd~~p~tp~WqGe 189 (272)
T PRK03187 146 YLYDWHYDRDLKLITKTGGDFLPGDCVYFK---NPDFNPATPEWQGE 189 (272)
T ss_pred EEEecCCCCCcceEEecCCCCCCCcEEEec---CCCCCCCCCcccce
Confidence 4566665444455 66799999973 5655544 788987
No 57
>KOG3705|consensus
Probab=67.30 E-value=8.1 Score=31.80 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=25.2
Q ss_pred EEEEceeccCCCCCcccCCCCCEEEEe
Q psy4489 14 LLYFTYKYTREDVDELSFDVGEIIRVV 40 (72)
Q Consensus 14 ~vrAlYdY~a~~~DELsF~~GDiI~Vi 40 (72)
.++++|+..++..+|+.++.||+|-|-
T Consensus 511 n~ivi~aH~prt~~ei~l~vGD~vgvA 537 (580)
T KOG3705|consen 511 NVIVIEAHIPRTNKEIDLKVGDKVGVA 537 (580)
T ss_pred ceEEEEecCCCcccccCcccCCeeeec
Confidence 388999999999999999999999985
No 58
>COG0186 RpsQ Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]
Probab=66.32 E-value=11 Score=24.27 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=28.4
Q ss_pred eccCceEEEEEceeccCCCCCcccCCCCCEEEEee
Q psy4489 7 SALNLIRLLYFTYKYTREDVDELSFDVGEIIRVVE 41 (72)
Q Consensus 7 ~~~~~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~ 41 (72)
..|.+...++-.-.|.|-+ ++...+.||++.+.+
T Consensus 33 ~hp~Y~K~v~r~kK~~aHd-e~~~~k~GD~V~I~E 66 (87)
T COG0186 33 YHPKYGKYVRRSKKYHAHD-ECNEAKVGDIVRIAE 66 (87)
T ss_pred ecccceEEEEEEeeeEeec-ccccCCCCCEEEEEE
Confidence 3466667788888899998 899999999999976
No 59
>PRK10884 SH3 domain-containing protein; Provisional
Probab=63.82 E-value=12 Score=26.81 Aligned_cols=30 Identities=13% Similarity=0.407 Sum_probs=22.9
Q ss_pred cCCCCCEEEEeecCCCcccccCccEEEe-CCcccc
Q psy4489 30 SFDVGEIIRVVEYDDPEEQVDKIFSLRT-DTVEMW 63 (72)
Q Consensus 30 sF~~GDiI~Vi~~~dpe~~d~GWw~G~l-~~~~~w 63 (72)
++++|+.++|++.. .+.||.+=+. +|.++|
T Consensus 49 ~l~~G~~v~vl~~~----~~~~w~~Vr~~~G~~GW 79 (206)
T PRK10884 49 TLNAGEEVTLLQVN----ANTNYAQIRDSKGRTAW 79 (206)
T ss_pred EEcCCCEEEEEEEc----CCCCEEEEEeCCCCEEe
Confidence 67899999999743 2468998874 667788
No 60
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=56.22 E-value=5.9 Score=26.70 Aligned_cols=23 Identities=9% Similarity=0.235 Sum_probs=15.5
Q ss_pred CcccCCCCCEEEEeecCCCcccccCccEEEeC
Q psy4489 27 DELSFDVGEIIRVVEYDDPEEQVDKIFSLRTD 58 (72)
Q Consensus 27 DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~ 58 (72)
-+..+++||++.+ ..|||.-..+
T Consensus 209 ~~~~l~pGD~Lfi---------P~gWwH~V~~ 231 (251)
T PF13621_consen 209 YEVVLEPGDVLFI---------PPGWWHQVEN 231 (251)
T ss_dssp EEEEEETT-EEEE----------TT-EEEEEE
T ss_pred eEEEECCCeEEEE---------CCCCeEEEEE
Confidence 3567789999997 6799998754
No 61
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=50.93 E-value=22 Score=19.45 Aligned_cols=29 Identities=7% Similarity=0.149 Sum_probs=21.5
Q ss_pred cCCCCCEEEEeecCCCcccccCccEEEeC-Ccccc
Q psy4489 30 SFDVGEIIRVVEYDDPEEQVDKIFSLRTD-TVEMW 63 (72)
Q Consensus 30 sF~~GDiI~Vi~~~dpe~~d~GWw~G~l~-~~~~w 63 (72)
.+.+|+.+.++.. ..++|.+=+.. +..+|
T Consensus 26 ~l~~g~~v~i~~~-----~~~~W~~v~~~~g~~Gw 55 (63)
T smart00287 26 TLKKGDKVKVLGV-----DGQDWAKITYGSGQRGY 55 (63)
T ss_pred EecCCCEEEEEEc-----cCCceEEEEcCCCCEEE
Confidence 4679999999863 22389988775 67776
No 62
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=49.58 E-value=14 Score=17.30 Aligned_cols=12 Identities=42% Similarity=1.005 Sum_probs=10.2
Q ss_pred cCCCCCEEEEee
Q psy4489 30 SFDVGEIIRVVE 41 (72)
Q Consensus 30 sF~~GDiI~Vi~ 41 (72)
.|++||.+.|+.
T Consensus 1 ~~~~G~~V~I~~ 12 (28)
T smart00739 1 KFEVGDTVRVIA 12 (28)
T ss_pred CCCCCCEEEEeE
Confidence 378999999985
No 63
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=45.78 E-value=20 Score=19.24 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=19.8
Q ss_pred cCCCCCEEEEeecCCCcccccCccEE-EeCCcccc
Q psy4489 30 SFDVGEIIRVVEYDDPEEQVDKIFSL-RTDTVEMW 63 (72)
Q Consensus 30 sF~~GDiI~Vi~~~dpe~~d~GWw~G-~l~~~~~w 63 (72)
.+.+|+.|.++... .+.+|++= ..++.++|
T Consensus 18 ~l~~g~~v~v~~~~----~~~~W~~V~~~~g~~Gw 48 (55)
T PF08239_consen 18 QLPKGEKVTVLGES----GDGNWYKVRTYDGKTGW 48 (55)
T ss_dssp EEETTSEEEEEEEE----TT--EEEEEEETTEEEE
T ss_pred EEeCCCEEEEEEEc----CCcEEEEEECcCCcEEE
Confidence 46789999999742 22239887 55766666
No 64
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=44.12 E-value=52 Score=20.62 Aligned_cols=11 Identities=18% Similarity=0.567 Sum_probs=9.1
Q ss_pred CCCCCEEEEee
Q psy4489 31 FDVGEIIRVVE 41 (72)
Q Consensus 31 F~~GDiI~Vi~ 41 (72)
+++||.|+|..
T Consensus 92 ~~~G~~V~V~Y 102 (148)
T PF12158_consen 92 YPIGDTVTVYY 102 (148)
T ss_pred CCCcCEEEEEE
Confidence 66899999964
No 65
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=41.27 E-value=15 Score=22.90 Aligned_cols=10 Identities=40% Similarity=0.737 Sum_probs=6.8
Q ss_pred ccCCCCCEEE
Q psy4489 29 LSFDVGEIIR 38 (72)
Q Consensus 29 LsF~~GDiI~ 38 (72)
-+|++||+|.
T Consensus 67 ~~FrpGDIVr 76 (82)
T PF10447_consen 67 DCFRPGDIVR 76 (82)
T ss_dssp GT--SSSEEE
T ss_pred hccCCCCEEE
Confidence 4899999986
No 66
>KOG2996|consensus
Probab=40.01 E-value=16 Score=31.46 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=29.0
Q ss_pred EEEEceeccCCCC------CcccCCCCCEEEEeecCCCcccccCccEEEeCCc
Q psy4489 14 LLYFTYKYTREDV------DELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTV 60 (72)
Q Consensus 14 ~vrAlYdY~a~~~------DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~ 60 (72)
+..+.-.|.+..+ --|.|++||++..+..+ .++-||.|+.-+.
T Consensus 606 km~~vq~ysg~p~Pag~igP~l~~~~gdvlel~~~d----~~s~~w~gr~~~s 654 (865)
T KOG2996|consen 606 KMDVVQNYSGIPPPAGSIGPRLVLQEGDVLELLKGD----AESSWWEGRNHGS 654 (865)
T ss_pred chhhhhccCCCCCCCccCCCceEecCCceeehhcCC----CCCcccccCCccC
Confidence 3344445554433 24789999999998753 3678999987543
No 67
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []. PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....
Probab=39.90 E-value=26 Score=20.59 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=9.5
Q ss_pred cCCCCCEEEEeec
Q psy4489 30 SFDVGEIIRVVEY 42 (72)
Q Consensus 30 sF~~GDiI~Vi~~ 42 (72)
.|++||+|.|+..
T Consensus 30 ~f~~gd~V~i~~~ 42 (74)
T PF01472_consen 30 DFRKGDEVAIVDE 42 (74)
T ss_dssp T--TTSEEEEEET
T ss_pred CcCCCCEEEEEcC
Confidence 6899999999863
No 68
>KOG4384|consensus
Probab=39.81 E-value=16 Score=28.92 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=32.8
Q ss_pred cCceEEEEEceecc--CCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCc
Q psy4489 9 LNLIRLLYFTYKYT--REDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTV 60 (72)
Q Consensus 9 ~~~l~~vrAlYdY~--a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~ 60 (72)
.++=-++++.=+|. +.+.|||-.++||+|.++++. .=|-|.|.+++.
T Consensus 133 ~p~c~~~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~-----~~~~~~g~~~~k 181 (361)
T KOG4384|consen 133 GPFCGRARVHTDFTPSPYDTDSLKIKKGDIIDIIEKP-----PMGTWLGLLNNK 181 (361)
T ss_pred CCccccccccccCCCCcccccchhhcccchhhccccC-----ccccccccccCc
Confidence 34444555655664 457899999999999999863 336777777653
No 69
>PF03712 Cu2_monoox_C: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A ....
Probab=39.78 E-value=17 Score=24.58 Aligned_cols=32 Identities=9% Similarity=0.017 Sum_probs=16.5
Q ss_pred eeeeccCceEEEEEceeccCCCCCcccCCCCCEEEE
Q psy4489 4 VILSALNLIRLLYFTYKYTREDVDELSFDVGEIIRV 39 (72)
Q Consensus 4 ~~~~~~~~l~~vrAlYdY~a~~~DELsF~~GDiI~V 39 (72)
.|++-+++.+.-...|.+. .++.+.+||.|.+
T Consensus 66 ~l~~~~~~dfn~Q~~y~l~----~~v~i~~GD~l~~ 97 (156)
T PF03712_consen 66 PLGRIPPYDFNWQEFYPLK----EPVTIPPGDTLRT 97 (156)
T ss_dssp EEEEE-TTS----S-EEEE----EEEEE-TT-EEEE
T ss_pred EEEecCCCCCccceeEECC----CceEecCCCEEEE
Confidence 3444555555445555555 7899999999988
No 70
>TIGR03630 arch_S17P archaeal ribosomal protein S17P. This model describes exclusively the archaeal ribosomal protein S17P. It excludes homologous ribosomal proteins S11 from eukaryotes and S17 from bacteria.
Probab=39.13 E-value=54 Score=21.52 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=26.2
Q ss_pred ccCceEEEEEceeccCCCCCcccCCCCCEEEEee
Q psy4489 8 ALNLIRLLYFTYKYTREDVDELSFDVGEIIRVVE 41 (72)
Q Consensus 8 ~~~~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~ 41 (72)
-|.+...++-.-.|.|-+++....+.||.|.+.+
T Consensus 53 hpkY~K~i~r~kky~aHDe~cn~~kvGD~V~I~E 86 (102)
T TIGR03630 53 DRKYERYERRRSKIHAHNPPCIDVKEGDIVIIGE 86 (102)
T ss_pred cCCccEEEEEeeeEEEECCCCCCCCCCCEEEEEE
Confidence 3556666777778888877656789999999975
No 71
>TIGR03635 S17_bact 30S ribosomal protein S17. This model describes the bacterial ribosomal small subunit protein S17, while excluding cytosolic eukaryotic homologs and archaeal homologs. The model finds many, but not, chloroplast and mitochondrial counterparts to bacterial S17.
Probab=36.79 E-value=57 Score=19.76 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=22.4
Q ss_pred cCceEEEEEceeccCCCCCcccCCCCCEEEEee
Q psy4489 9 LNLIRLLYFTYKYTREDVDELSFDVGEIIRVVE 41 (72)
Q Consensus 9 ~~~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~ 41 (72)
|.+....+-.=.|.+-++.. +.+.||+|.+.+
T Consensus 28 ~ky~k~~~r~kk~~aHD~~~-~~k~GD~V~I~e 59 (71)
T TIGR03635 28 PLYGKIVKRTKKYHAHDENN-ECKVGDVVRIIE 59 (71)
T ss_pred ccccEEEEccEEEEEECCCC-CCCCCCEEEEEE
Confidence 44445555556677777754 799999999864
No 72
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=35.51 E-value=34 Score=21.57 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=11.9
Q ss_pred cCCCCCEEEEeecC
Q psy4489 30 SFDVGEIIRVVEYD 43 (72)
Q Consensus 30 sF~~GDiI~Vi~~~ 43 (72)
.|++||+|.|+.++
T Consensus 5 ~~~~GD~VyViYrN 18 (75)
T PF11132_consen 5 PYHAGDIVYVIYRN 18 (75)
T ss_pred ccCCCCEEEEEEcC
Confidence 57899999999863
No 73
>PRK08572 rps17p 30S ribosomal protein S17P; Reviewed
Probab=35.25 E-value=64 Score=21.34 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=25.5
Q ss_pred cCceEEEEEceeccCCCCCcccCCCCCEEEEee
Q psy4489 9 LNLIRLLYFTYKYTREDVDELSFDVGEIIRVVE 41 (72)
Q Consensus 9 ~~~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~ 41 (72)
|.+-..++-.=.|.+-++.....+.||+|.+.+
T Consensus 56 pkY~K~i~r~kky~aHDe~cn~~kvGD~V~I~E 88 (108)
T PRK08572 56 PKYERYEKRRSRIHAHNPPCIDAKVGDKVKIAE 88 (108)
T ss_pred CCccEEEEEeeeEEEECCCCCCCCCCCEEEEEE
Confidence 445556667777888887767799999999975
No 74
>KOG1740|consensus
Probab=32.65 E-value=31 Score=23.07 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=19.4
Q ss_pred EEEEceeccCCCCCcccCCCCCEEEE
Q psy4489 14 LLYFTYKYTREDVDELSFDVGEIIRV 39 (72)
Q Consensus 14 ~vrAlYdY~a~~~DELsF~~GDiI~V 39 (72)
.++-.-+|.+.++++ .|+.||.+.+
T Consensus 34 yv~~~~kymahD~~n-~cnvGD~Vrl 58 (107)
T KOG1740|consen 34 YVKRTSKYMAHDDKN-QCNVGDRVRL 58 (107)
T ss_pred HHHHhhheeecCccc-cccccceEEe
Confidence 345556788888877 7999999986
No 75
>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.36 E-value=35 Score=22.72 Aligned_cols=19 Identities=32% Similarity=0.639 Sum_probs=16.5
Q ss_pred CCCCcccCCCCCEEEEeec
Q psy4489 24 EDVDELSFDVGEIIRVVEY 42 (72)
Q Consensus 24 ~~~DELsF~~GDiI~Vi~~ 42 (72)
++..|=+|++||++.|-..
T Consensus 26 RD~SEShf~~g~vlrV~r~ 44 (106)
T COG3097 26 RDKSESHFKPGDVLRVGRF 44 (106)
T ss_pred eccchhcCCCCCEEEEEEe
Confidence 5778999999999999764
No 76
>PRK05610 rpsQ 30S ribosomal protein S17; Reviewed
Probab=30.70 E-value=80 Score=19.76 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=23.5
Q ss_pred cCceEEEEEceeccCCCCCcccCCCCCEEEEee
Q psy4489 9 LNLIRLLYFTYKYTREDVDELSFDVGEIIRVVE 41 (72)
Q Consensus 9 ~~~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~ 41 (72)
|.+...++-.=.|.|-++.. ..+.||+|.+.+
T Consensus 33 ~kY~K~~~r~kk~~aHD~~n-~~k~GD~V~I~e 64 (84)
T PRK05610 33 PLYGKIVKRSKKYHAHDENN-EAKIGDVVRIME 64 (84)
T ss_pred ccccEEEEcceEEEEECCCC-CCCCCCEEEEEE
Confidence 44555566666777777765 699999999865
No 77
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=30.43 E-value=81 Score=16.89 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=19.1
Q ss_pred cCCCCCEEEEeecCCCcccccCccEEEeCCcc
Q psy4489 30 SFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVE 61 (72)
Q Consensus 30 sF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~ 61 (72)
.|+.|+.+.+-- . +.-|.+|++.+..
T Consensus 2 ~~~~G~~~~a~~-~-----d~~wyra~I~~~~ 27 (57)
T smart00333 2 TFKVGDKVAARW-E-----DGEWYRARIIKVD 27 (57)
T ss_pred CCCCCCEEEEEe-C-----CCCEEEEEEEEEC
Confidence 578898888753 2 5679999886554
No 78
>KOG2130|consensus
Probab=29.82 E-value=47 Score=26.58 Aligned_cols=24 Identities=17% Similarity=0.047 Sum_probs=20.0
Q ss_pred CcccCCCCCEEEEeecCCCcccccCccEEEeCC
Q psy4489 27 DELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDT 59 (72)
Q Consensus 27 DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~ 59 (72)
=|..-.+|+.|.| ..|||.-.+|-
T Consensus 263 IEc~q~pGEt~fV---------P~GWWHvVlNl 286 (407)
T KOG2130|consen 263 IECLQKPGETMFV---------PSGWWHVVLNL 286 (407)
T ss_pred ceeeecCCceEEe---------cCCeEEEEecc
Confidence 4677789999998 57999999874
No 79
>KOG0040|consensus
Probab=29.72 E-value=3.3 Score=38.76 Aligned_cols=44 Identities=9% Similarity=0.268 Sum_probs=35.7
Q ss_pred EEEEceeccCCCCCcccCCCCCEEEEeecCCCcccccCccEEEeCCccc
Q psy4489 14 LLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEM 62 (72)
Q Consensus 14 ~vrAlYdY~a~~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~ 62 (72)
++.|||+|..-.+-|.+.++||+.+.+... .--||.-+++...+
T Consensus 970 ~v~alyd~q~kSprev~mKkgDvltll~s~-----nkdwwkve~~d~qg 1013 (2399)
T KOG0040|consen 970 CVLALYDYQEKSPREVTMKKGDVLTLLNSI-----NKDWWKVEVNDRQG 1013 (2399)
T ss_pred HHHHHHHHHhcCHHHHHHhhhhHHHHHhhc-----ccccccchhhhhcC
Confidence 467999999999999999999999987643 34699988765543
No 80
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=28.64 E-value=39 Score=25.51 Aligned_cols=19 Identities=21% Similarity=0.630 Sum_probs=16.0
Q ss_pred CcccCCCCCEEEEeecCCC
Q psy4489 27 DELSFDVGEIIRVVEYDDP 45 (72)
Q Consensus 27 DELsF~~GDiI~Vi~~~dp 45 (72)
+++++++||.|.|...+++
T Consensus 26 ~~~~y~~GD~l~v~P~N~~ 44 (384)
T cd06206 26 DGMTYRAGDYLAVLPRNPP 44 (384)
T ss_pred CCCccCCCCEEEEECCCCH
Confidence 4799999999999986554
No 81
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=28.63 E-value=39 Score=20.90 Aligned_cols=16 Identities=13% Similarity=0.445 Sum_probs=11.7
Q ss_pred cccCCCCCEEEEeecC
Q psy4489 28 ELSFDVGEIIRVVEYD 43 (72)
Q Consensus 28 ELsF~~GDiI~Vi~~~ 43 (72)
.+.+++||+|.+++.+
T Consensus 46 ~~g~k~GdVvkI~R~S 61 (74)
T PF01191_consen 46 YLGAKPGDVVKIIRKS 61 (74)
T ss_dssp HTT--TTSEEEEEEEE
T ss_pred hcCCCCCCEEEEEecC
Confidence 4789999999999854
No 82
>PRK06033 hypothetical protein; Validated
Probab=28.21 E-value=43 Score=20.72 Aligned_cols=13 Identities=23% Similarity=0.440 Sum_probs=11.0
Q ss_pred CcccCCCCCEEEE
Q psy4489 27 DELSFDVGEIIRV 39 (72)
Q Consensus 27 DELsF~~GDiI~V 39 (72)
+=|.+++||+|..
T Consensus 24 dlL~L~~GDVI~L 36 (83)
T PRK06033 24 QVLRMGRGAVIPL 36 (83)
T ss_pred HHhCCCCCCEEEe
Confidence 4488999999997
No 83
>KOG1769|consensus
Probab=27.54 E-value=56 Score=21.47 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEEceecc----CCCCCcccCCCCCEEEEee
Q psy4489 14 LLYFTYKYT----REDVDELSFDVGEIIRVVE 41 (72)
Q Consensus 14 ~vrAlYdY~----a~~~DELsF~~GDiI~Vi~ 41 (72)
.+|-+||=+ .+.+++|.++.||.|.|..
T Consensus 60 s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~ 91 (99)
T KOG1769|consen 60 SLRFLFDGQRIRETHTPADLEMEDGDEIEVVQ 91 (99)
T ss_pred eEEEEECCcCcCCCCChhhhCCcCCcEEEEEe
Confidence 355556532 2356899999999999975
No 84
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=27.34 E-value=47 Score=19.20 Aligned_cols=11 Identities=18% Similarity=0.845 Sum_probs=8.6
Q ss_pred CCCCCEEEEee
Q psy4489 31 FDVGEIIRVVE 41 (72)
Q Consensus 31 F~~GDiI~Vi~ 41 (72)
|++||++..-.
T Consensus 1 f~~GDvV~LKS 11 (53)
T PF09926_consen 1 FKIGDVVQLKS 11 (53)
T ss_pred CCCCCEEEEcc
Confidence 78899988644
No 85
>PTZ00241 40S ribosomal protein S11; Provisional
Probab=25.92 E-value=1.5e+02 Score=21.01 Aligned_cols=34 Identities=12% Similarity=-0.014 Sum_probs=26.5
Q ss_pred ccCceEEEEEceeccCCCCCcccCCCCCEEEEee
Q psy4489 8 ALNLIRLLYFTYKYTREDVDELSFDVGEIIRVVE 41 (72)
Q Consensus 8 ~~~~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~ 41 (72)
-|.+-...+-.=.|.|-++.+...+.||+|.+.+
T Consensus 94 h~kY~K~~kr~kk~~aHd~~~~~~kvGD~V~I~E 127 (158)
T PTZ00241 94 VKKYNRYEKRHKNIPVHCSPCFDVKEGDIVVVGQ 127 (158)
T ss_pred cCccceEEEeeecEEEeCCccCCCCCCCEEEEEE
Confidence 3455566666777888888888899999999965
No 86
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=25.73 E-value=1.3e+02 Score=21.81 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=20.4
Q ss_pred cCCCCCEEEEeecCCCcccccCccEEEeCC
Q psy4489 30 SFDVGEIIRVVEYDDPEEQVDKIFSLRTDT 59 (72)
Q Consensus 30 sF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~ 59 (72)
+.++|+.++|+... ...||-+.+...
T Consensus 49 ~i~~Ge~vtvl~~~----~~~~~~qI~~~~ 74 (205)
T COG3103 49 SIKAGEKVTVLGTD----GNTGYYQIRDSS 74 (205)
T ss_pred EecCCcEEEEEEEc----CcccEEEEEecC
Confidence 78899999999753 345899988854
No 87
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=25.48 E-value=99 Score=19.70 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=15.4
Q ss_pred eeeeccCceEEEEEceeccCCCCCcccCCCCCEEEE
Q psy4489 4 VILSALNLIRLLYFTYKYTREDVDELSFDVGEIIRV 39 (72)
Q Consensus 4 ~~~~~~~~l~~vrAlYdY~a~~~DELsF~~GDiI~V 39 (72)
+.+++.++-.++|.+.++. .++.|+++.|
T Consensus 46 v~~~~~~iRpRARt~l~w~-------~L~VG~~VMv 74 (85)
T PF12148_consen 46 VEMRSKDIRPRARTILKWD-------ELKVGQVVMV 74 (85)
T ss_dssp EEEEGGGEEE---SBE-GG-------G--TT-EEEE
T ss_pred eecccccccceeeEeccHH-------hCCcccEEEE
Confidence 4556667777777776664 4678999988
No 88
>PF13550 Phage-tail_3: Putative phage tail protein
Probab=25.34 E-value=89 Score=19.81 Aligned_cols=15 Identities=27% Similarity=0.694 Sum_probs=12.2
Q ss_pred CcccCCCCCEEEEee
Q psy4489 27 DELSFDVGEIIRVVE 41 (72)
Q Consensus 27 DELsF~~GDiI~Vi~ 41 (72)
+-+.+++||+|.+..
T Consensus 136 ~~~~l~pGDvi~l~~ 150 (164)
T PF13550_consen 136 DGLALEPGDVIALSD 150 (164)
T ss_pred hhccCCCCCEEEEEe
Confidence 337899999999864
No 89
>KOG0708|consensus
Probab=25.22 E-value=26 Score=27.60 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=34.9
Q ss_pred CceEEEEEceeccCCCCC-----cccCCCCCEEEEeecCCCcccccCccEEEeCC
Q psy4489 10 NLIRLLYFTYKYTREDVD-----ELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDT 59 (72)
Q Consensus 10 ~~l~~vrAlYdY~a~~~D-----ELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~ 59 (72)
.+-.+++|++||....+. -++|..|+++.++..+ ++-||.++..+
T Consensus 64 ~~~~~v~~~~d~d~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~e~~~~r~~s 113 (359)
T KOG0708|consen 64 WRCLYVDALFDYDLDRGSPGYSRAQSFLYGQILHLISRS-----DDEWWQARHVS 113 (359)
T ss_pred CceeEeeccccccccCCCCCcchhhhhhhhhhhhccccc-----cHHHHHhhccC
Confidence 456679999999877663 3689999999998754 45699887654
No 90
>PF01245 Ribosomal_L19: Ribosomal protein L19; InterPro: IPR001857 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L19 is one of the proteins from the large ribosomal subunit [, ]. In Escherichia coli, L19 is known to be located at the 30S-50S ribosomal subunit interface [] and may play a role in the structure and function of the aminoacyl-tRNA binding site. It belongs to a family of ribosomal proteins, including L19 from bacteria and the chloroplasts of red algae. L19 is a protein of 120 to 130 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3HUZ_T 3V2D_T 3I8I_R 2XG2_T 2V49_T 2XUX_T 3HUX_T 3I9C_R 3V25_T 3UZ2_R ....
Probab=24.95 E-value=51 Score=21.69 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=12.9
Q ss_pred CCcccCCCCCEEEEeec
Q psy4489 26 VDELSFDVGEIIRVVEY 42 (72)
Q Consensus 26 ~DELsF~~GDiI~Vi~~ 42 (72)
.+--.|++||+|.|...
T Consensus 14 ~~~p~f~~GD~v~V~~~ 30 (113)
T PF01245_consen 14 KDIPEFRVGDTVRVTYK 30 (113)
T ss_dssp SSSSSSSSSSEEEEEEE
T ss_pred cCCCCcCCCCEEEEEEE
Confidence 34457999999999653
No 91
>CHL00142 rps17 ribosomal protein S17; Validated
Probab=24.55 E-value=1.4e+02 Score=18.73 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=21.4
Q ss_pred cCceEEEEEceeccCCCCCcccCCCCCEEEEee
Q psy4489 9 LNLIRLLYFTYKYTREDVDELSFDVGEIIRVVE 41 (72)
Q Consensus 9 ~~~l~~vrAlYdY~a~~~DELsF~~GDiI~Vi~ 41 (72)
|.+...++-.=.|.|-++.. ..+.||+|.+.+
T Consensus 30 ~kY~K~~~r~kk~~aHDe~n-~~~~GD~V~I~e 61 (84)
T CHL00142 30 PIYGKIITKTKKYLVHDEEN-ECNIGDQVLIEE 61 (84)
T ss_pred CcccEEEEeeEEEEEeCCCC-CCCCCCEEEEEE
Confidence 34444455555666666554 699999999865
No 92
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=24.37 E-value=79 Score=25.86 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=22.8
Q ss_pred cCCCCCEEEEeecCCCcccccCccEEEeC-Ccccc
Q psy4489 30 SFDVGEIIRVVEYDDPEEQVDKIFSLRTD-TVEMW 63 (72)
Q Consensus 30 sF~~GDiI~Vi~~~dpe~~d~GWw~G~l~-~~~~w 63 (72)
++.+|+.|.|+.. .+.||++=+.+ |.++|
T Consensus 104 sl~~G~~V~Vl~~-----~~ngW~kI~~~~GktGw 133 (481)
T PRK13914 104 SIKGGTKVTVETT-----ESNGWHKITYNDGKTGF 133 (481)
T ss_pred eecCCCEEEEeec-----ccCCeEEEEcCCCCEEE
Confidence 6789999999741 25689999885 77888
No 93
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=23.73 E-value=84 Score=22.35 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=19.7
Q ss_pred EEceeccCCCCCcccCCCCCEEEE
Q psy4489 16 YFTYKYTREDVDELSFDVGEIIRV 39 (72)
Q Consensus 16 rAlYdY~a~~~DELsF~~GDiI~V 39 (72)
+|.--+-+.+--||+|.+||+|.+
T Consensus 74 qA~l~iGG~~G~el~v~~GDvlli 97 (163)
T COG4297 74 QAGLQIGGADGQELEVGEGDVLLI 97 (163)
T ss_pred eeEEEecCCCCceeeecCCCEEEE
Confidence 455566678889999999999986
No 94
>PF12736 CABIT: Cell-cycle sustaining, positive selection,
Probab=23.62 E-value=89 Score=22.09 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=26.0
Q ss_pred cCceEEEEEceeccCCC----------CCcccCCCCCEEEEe
Q psy4489 9 LNLIRLLYFTYKYTRED----------VDELSFDVGEIIRVV 40 (72)
Q Consensus 9 ~~~l~~vrAlYdY~a~~----------~DELsF~~GDiI~Vi 40 (72)
...-.++.|.-+|.+.. .+..++.+||.+.++
T Consensus 81 ~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~L~l~ 122 (256)
T PF12736_consen 81 RGFPLRVVVTKDITFSSASGENSSVSDYGKRTVPAGEVLRLL 122 (256)
T ss_pred ccCCCEEEEcCccceecccccccccccCCceEECCCCEEEEE
Confidence 34445688888888875 788999999999998
No 95
>KOG3409|consensus
Probab=23.39 E-value=48 Score=24.23 Aligned_cols=13 Identities=38% Similarity=0.664 Sum_probs=10.2
Q ss_pred ccCCCCCEEE--Eee
Q psy4489 29 LSFDVGEIIR--VVE 41 (72)
Q Consensus 29 LsF~~GDiI~--Vi~ 41 (72)
=||++||+|. |++
T Consensus 121 ksFrPgDiVlAkVis 135 (193)
T KOG3409|consen 121 KSFRPGDIVLAKVIS 135 (193)
T ss_pred hccCCCcEEEEEEee
Confidence 3899999996 454
No 96
>KOG1708|consensus
Probab=22.62 E-value=1.5e+02 Score=22.29 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=25.9
Q ss_pred CCCcccCCCCCEEEEeecCCCcccccCccEEEeCCccccceEEEeecC
Q psy4489 25 DVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEMWDVIVIGLNT 72 (72)
Q Consensus 25 ~~DELsF~~GDiI~Vi~~~dpe~~d~GWw~G~l~~~~~w~~~~~~~~~ 72 (72)
.+.+-+|..||.|.|+..-|.. -.|=-.-... -.+| +||=||||
T Consensus 67 ~d~dw~ff~GDtVeVlvGkDkG--kqG~Vtqv~r-~~s~-VvV~gln~ 110 (236)
T KOG1708|consen 67 IDEDWHFFFGDTVEVLVGKDKG--KQGEVTQVIR-HRSW-VVVKGLNT 110 (236)
T ss_pred cccceeEecCCEEEEEecccCC--ccceEEEEee-cCce-EEEcccch
Confidence 4567899999999998753322 1122222221 2233 67778886
No 97
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=22.60 E-value=48 Score=25.55 Aligned_cols=15 Identities=13% Similarity=0.408 Sum_probs=13.5
Q ss_pred cEEEeCCccccceEE
Q psy4489 53 FSLRTDTVEMWDVIV 67 (72)
Q Consensus 53 w~G~l~~~~~w~~~~ 67 (72)
|.|+|..|..|+.++
T Consensus 13 ~~g~cp~c~~w~~~~ 27 (372)
T cd01121 13 WLGKCPECGEWNTLV 27 (372)
T ss_pred ccEECcCCCCceeee
Confidence 689999999999876
No 98
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=22.57 E-value=45 Score=23.15 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=10.5
Q ss_pred cccCCCCCEEEEeecCCC
Q psy4489 28 ELSFDVGEIIRVVEYDDP 45 (72)
Q Consensus 28 ELsF~~GDiI~Vi~~~dp 45 (72)
.+++++||.|.|+..+++
T Consensus 39 ~l~Y~pGD~l~V~P~N~~ 56 (219)
T PF00667_consen 39 GLSYQPGDHLGVYPPNDP 56 (219)
T ss_dssp TG---TT-EEEEE-SSEH
T ss_pred CCcccCCCEEEEEccCCH
Confidence 899999999999976543
No 99
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=22.19 E-value=66 Score=19.71 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=14.0
Q ss_pred CCCcccCCCCCEEEEee
Q psy4489 25 DVDELSFDVGEIIRVVE 41 (72)
Q Consensus 25 ~~DELsF~~GDiI~Vi~ 41 (72)
.+++|.+++||.|....
T Consensus 15 ~P~~i~v~~G~~V~~~N 31 (99)
T TIGR02656 15 EPAKISIAAGDTVEWVN 31 (99)
T ss_pred eCCEEEECCCCEEEEEE
Confidence 35789999999998874
No 100
>PF01957 NfeD: NfeD-like C-terminal, partner-binding; InterPro: IPR002810 The nfe genes (nfeA, nfeB, and nfeD) are involved in the nodulation efficiency and competitiveness of Rhizobium meliloti (Sinorhizobium meliloti) (Rhizobium meliloti) on alfalfa roots []. The specific function of this family is unknown although it is unlikely that NfeD is specifically involved in nodulation as the family contains several different archaeal and bacterial species most of which are not symbionts. This entry describes archaeal and bacterial proteins which are variously described, examples are: nodulation protein, nodulation efficiency protein D (nfeD), hypothetical protein and membrane-bound serine protease (ClpP class). A number of these proteins are classified in MEROPS peptidase family S49 as non-peptidase homologues or as unassigned peptidases. ; PDB: 2K5H_A 3CP0_A 2EXD_A.
Probab=22.14 E-value=43 Score=20.95 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=12.4
Q ss_pred cCCCCCcccCCCCCEEEEeec
Q psy4489 22 TREDVDELSFDVGEIIRVVEY 42 (72)
Q Consensus 22 ~a~~~DELsF~~GDiI~Vi~~ 42 (72)
+|+.+++ +++||.|.|++.
T Consensus 115 ~A~s~~~--i~~G~~V~Vv~v 133 (144)
T PF01957_consen 115 RARSEDE--IPKGDRVRVVGV 133 (144)
T ss_dssp EEEESST--B-TT-EEEEEEE
T ss_pred EEEeCCC--CCCCCEEEEEEE
Confidence 4455555 999999999874
No 101
>COG5475 Uncharacterized small protein [Function unknown]
Probab=22.03 E-value=58 Score=19.71 Aligned_cols=14 Identities=29% Similarity=0.755 Sum_probs=10.5
Q ss_pred cccCCCCCEEEEee
Q psy4489 28 ELSFDVGEIIRVVE 41 (72)
Q Consensus 28 ELsF~~GDiI~Vi~ 41 (72)
|.+|..||++++=+
T Consensus 2 ~~~FstgdvV~lKs 15 (60)
T COG5475 2 EMSFSTGDVVTLKS 15 (60)
T ss_pred CceeecCcEEEeec
Confidence 46788899888743
No 102
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=21.92 E-value=89 Score=16.74 Aligned_cols=15 Identities=13% Similarity=0.410 Sum_probs=12.1
Q ss_pred CcccCCCCCEEEEee
Q psy4489 27 DELSFDVGEIIRVVE 41 (72)
Q Consensus 27 DELsF~~GDiI~Vi~ 41 (72)
.+|.+++||.|.+..
T Consensus 17 ~~l~l~~Gd~v~i~~ 31 (47)
T PF04014_consen 17 EKLGLKPGDEVEIEV 31 (47)
T ss_dssp HHTTSSTTTEEEEEE
T ss_pred HHcCCCCCCEEEEEE
Confidence 357889999999875
No 103
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=21.65 E-value=94 Score=19.48 Aligned_cols=16 Identities=19% Similarity=0.501 Sum_probs=13.6
Q ss_pred cccCCCCCEEEEeecC
Q psy4489 28 ELSFDVGEIIRVVEYD 43 (72)
Q Consensus 28 ELsF~~GDiI~Vi~~~ 43 (72)
.+.+++||+|.+++.+
T Consensus 49 ~~g~k~GdVvkI~R~S 64 (79)
T PRK09570 49 AIGAKPGDVIKIVRKS 64 (79)
T ss_pred hcCCCCCCEEEEEECC
Confidence 4689999999999864
No 104
>PF13538 UvrD_C_2: UvrD-like helicase C-terminal domain; PDB: 1W36_G 3K70_G 3DMN_A 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=21.35 E-value=59 Score=19.14 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=6.2
Q ss_pred CCCCCEEEEee
Q psy4489 31 FDVGEIIRVVE 41 (72)
Q Consensus 31 F~~GDiI~Vi~ 41 (72)
|++||+|.++.
T Consensus 1 ~~~gD~vv~~~ 11 (104)
T PF13538_consen 1 FRPGDKVVITR 11 (104)
T ss_dssp --TT-EEEE-C
T ss_pred CcCcCEEEEEe
Confidence 78999999876
No 105
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=21.33 E-value=91 Score=19.36 Aligned_cols=15 Identities=7% Similarity=0.527 Sum_probs=12.6
Q ss_pred ccCCCCCEEEEeecC
Q psy4489 29 LSFDVGEIIRVVEYD 43 (72)
Q Consensus 29 LsF~~GDiI~Vi~~~ 43 (72)
+.+++||.+.|+...
T Consensus 7 ~~I~~GD~V~Vi~G~ 21 (83)
T CHL00141 7 MHVKIGDTVKIISGS 21 (83)
T ss_pred CcccCCCEEEEeEcC
Confidence 578999999999853
No 106
>PF08696 Dna2: DNA replication factor Dna2; InterPro: IPR014808 Dna2 is a DNA replication factor with single-stranded DNA-dependent ATPase, ATP-dependent nuclease, (5'-flap endonuclease) and helicase activities. It is required for Okazaki fragment processing and is involved in DNA repair pathways []. ; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication
Probab=20.98 E-value=74 Score=22.47 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=12.3
Q ss_pred cccCCCCCEEEEee
Q psy4489 28 ELSFDVGEIIRVVE 41 (72)
Q Consensus 28 ELsF~~GDiI~Vi~ 41 (72)
++.|++||+|.++.
T Consensus 22 ~t~v~~Gd~I~ii~ 35 (209)
T PF08696_consen 22 ETPVSPGDIIHIIG 35 (209)
T ss_pred cCCCcCCCEEEEEE
Confidence 56799999999986
No 107
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=20.84 E-value=60 Score=18.80 Aligned_cols=11 Identities=36% Similarity=0.851 Sum_probs=6.7
Q ss_pred ccCCCCCEEEE
Q psy4489 29 LSFDVGEIIRV 39 (72)
Q Consensus 29 LsF~~GDiI~V 39 (72)
+++++||+|..
T Consensus 27 ~~L~~Gdvi~l 37 (77)
T PF01052_consen 27 LNLKVGDVIPL 37 (77)
T ss_dssp HC--TT-EEEE
T ss_pred hcCCCCCEEEe
Confidence 67889999987
No 108
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=20.71 E-value=96 Score=18.93 Aligned_cols=20 Identities=30% Similarity=0.597 Sum_probs=15.5
Q ss_pred cCCCCCcccCCCCCEEEEee
Q psy4489 22 TREDVDELSFDVGEIIRVVE 41 (72)
Q Consensus 22 ~a~~~DELsF~~GDiI~Vi~ 41 (72)
.+++..+|.++.||.|.|..
T Consensus 40 n~~dA~~lgi~~Gd~V~v~~ 59 (122)
T cd02791 40 HPEDAARLGLKEGDLVRVTS 59 (122)
T ss_pred CHHHHHHcCCCCCCEEEEEc
Confidence 34456789999999999864
No 109
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=20.59 E-value=61 Score=17.93 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=11.1
Q ss_pred CCcccCCCCCEEEEee
Q psy4489 26 VDELSFDVGEIIRVVE 41 (72)
Q Consensus 26 ~DELsF~~GDiI~Vi~ 41 (72)
..+..|++||+|.++-
T Consensus 43 ~~~~~l~~gD~l~v~g 58 (71)
T PF02080_consen 43 DGDTVLQAGDILIVVG 58 (71)
T ss_dssp -TT-BE-TTEEEEEEE
T ss_pred CCCCEECCCCEEEEEE
Confidence 3477899999999975
No 110
>PRK08433 flagellar motor switch protein; Validated
Probab=20.45 E-value=72 Score=21.03 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=11.2
Q ss_pred CcccCCCCCEEEE
Q psy4489 27 DELSFDVGEIIRV 39 (72)
Q Consensus 27 DELsF~~GDiI~V 39 (72)
|=|.+++||+|.+
T Consensus 49 dlL~Lq~GDVI~L 61 (111)
T PRK08433 49 EILKFEKGSVIDL 61 (111)
T ss_pred HHhCCCCCCEEEe
Confidence 4588999999997
No 111
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=20.21 E-value=80 Score=24.31 Aligned_cols=19 Identities=11% Similarity=0.316 Sum_probs=16.0
Q ss_pred CcccCCCCCEEEEeecCCC
Q psy4489 27 DELSFDVGEIIRVVEYDDP 45 (72)
Q Consensus 27 DELsF~~GDiI~Vi~~~dp 45 (72)
+.+++++||.|.|+..+++
T Consensus 34 ~~~~Y~~GD~l~I~p~N~~ 52 (416)
T cd06204 34 SGIRYQTGDHLAVWPTNPS 52 (416)
T ss_pred CCCcccCCCEEEEEcCCCH
Confidence 4789999999999987654
Done!