RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4489
(72 letters)
>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 74
Score = 36.7 bits (85), Expect = 2e-05
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDD 44
+T + + L+F +II V+E +
Sbjct: 17 CSWTAKKDNHLNFSKHDIITVLEQQE 42
>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 36.1 bits (83), Expect = 3e-05
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPE 46
Y ++LS G++I +++ +
Sbjct: 14 SAYVASGSEQLSLAPGQLILILKKNTSG 41
>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 58
Score = 34.4 bits (79), Expect = 7e-05
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPEE 47
Y + E+ +L F G++I +++ D +
Sbjct: 8 YSFAGEESGDLPFRKGDVITILKKSDSQN 36
>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 34.9 bits (80), Expect = 8e-05
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPEEQ 48
Y + + +ELS + ++++E+ D
Sbjct: 20 YTFKARNPNELSVSANQKLKILEFKDVTGN 49
>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 69
Score = 34.0 bits (78), Expect = 1e-04
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDD 44
Y Y+ + +L+F GE I V + D
Sbjct: 15 YPYSSVEPGDLTFTEGEEILVTQKDG 40
>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor
1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 35.0 bits (80), Expect = 1e-04
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPE 46
YT + DE+S GE + V+
Sbjct: 21 KAYTAVEGDEVSLLEGEAVEVIHKLLDG 48
>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha
subunit, pi3k), SH3 domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 83
Score = 34.4 bits (78), Expect = 1e-04
Identities = 7/45 (15%), Positives = 17/45 (37%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEMW 63
Y Y +E +++ +G+I+ V + R + +
Sbjct: 10 YDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWL 54
>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 34.1 bits (78), Expect = 1e-04
Identities = 8/28 (28%), Positives = 9/28 (32%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPE 46
Y E ELSF G + V
Sbjct: 17 YACKAEHDSELSFTAGTVFDNVHPSQEP 44
>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 69
Score = 33.7 bits (77), Expect = 2e-04
Identities = 4/35 (11%), Positives = 11/35 (31%)
Query: 12 IRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPE 46
+ Y L + G+I+ + + +
Sbjct: 10 FQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEH 44
>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 83
Score = 34.2 bits (78), Expect = 2e-04
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPEEQVD 50
+ YT D DEL G+++ V+ + +PEEQ +
Sbjct: 19 HDYTATDTDELQLKAGDVVLVIPFQNPEEQDE 50
>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 33.9 bits (77), Expect = 2e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPEE 47
Y + + DE+SF+ G+II+V E E
Sbjct: 12 YPFEARNHDEMSFNSGDIIQVDEKTVGEP 40
>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 33.3 bits (76), Expect = 3e-04
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPE 46
+ + + + DELS G+II V ++
Sbjct: 17 FNFKQTNEDELSVCKGDIIYVTRVEEGG 44
>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 33.2 bits (76), Expect = 3e-04
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPE 46
+ Y + DEL+F II+ VE +
Sbjct: 13 FDYKAQREDELTFIKSAIIQNVEKQEGG 40
>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 63
Score = 32.8 bits (75), Expect = 4e-04
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPEE 47
+ Y ++ DEL G+ + ++ +D +E
Sbjct: 11 WDYEPQNDDELPMKEGDCMTIIHREDEDE 39
>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 32.9 bits (75), Expect = 4e-04
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDD 44
+ Y +L F+ GE +R++E
Sbjct: 13 HSYEPSHDGDLGFEKGEQLRILEQSG 38
>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Caenorhabditis
elegans, SEM-5 [TaxId: 6239]}
Length = 58
Score = 32.7 bits (75), Expect = 4e-04
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPE 46
+ + ++ EL+F G++I ++ DDP
Sbjct: 9 FDFNPQESGELAFKRGDVITLINKDDPN 36
>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId:
9606]}
Length = 62
Score = 32.4 bits (74), Expect = 4e-04
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPE 46
+ Y ++L F G+II V+ + E
Sbjct: 12 FSYEATQPEDLEFQEGDIILVLSKVNEE 39
>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 32.9 bits (75), Expect = 4e-04
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPEE 47
Y + +L F G+++ +V
Sbjct: 13 YNFHGTAEQDLPFCKGDVLTIVAVTKDPN 41
>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 67
Score = 32.4 bits (74), Expect = 6e-04
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPE 46
Y Y + ++L G+ ++E +
Sbjct: 15 YDYMPMNANDLQLRKGDEYFILEESNLP 42
>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 32.0 bits (73), Expect = 6e-04
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPE 46
+ + ++ EL F G+ I V++ DP
Sbjct: 8 FDFDPQEDGELGFRRGDFIHVMDNSDPN 35
>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 32.0 bits (73), Expect = 6e-04
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDP 45
Y Y D DE+SF G+ I V+ D
Sbjct: 10 YDYMAADADEVSFKDGDAIINVQAIDE 36
>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 58
Score = 32.0 bits (73), Expect = 7e-04
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPE 46
Y Y + +EL+F + I +E+ D +
Sbjct: 7 YDYDAAEDNELTFVENDKIINIEFVDDD 34
>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 31.6 bits (72), Expect = 8e-04
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPEE 47
Y + DELSF G+I++V+ + +
Sbjct: 7 YDFKATADDELSFKRGDILKVLNEECDQN 35
>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 98
Score = 32.2 bits (73), Expect = 0.001
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPE 46
Y Y + DELSF G++I V+ DDP+
Sbjct: 41 YDYAANNEDELSFSKGQLINVMNKDDPD 68
>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 56
Score = 31.4 bits (71), Expect = 0.001
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPE 46
Y Y ++D DE++ G+ I +V D
Sbjct: 6 YAYVQKDDDEITITPGDKISLVARDTGS 33
>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 31.7 bits (72), Expect = 0.001
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDD 44
Y ++ +EL+F+ GE + V+E +
Sbjct: 13 YPFSSVTEEELNFEKGETMEVIEKPE 38
>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 57
Score = 31.2 bits (71), Expect = 0.001
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPE 46
Y Y D+LSF GE +++ + +
Sbjct: 7 YDYEAITEDDLSFHKGEKFQILNSSEGD 34
>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 57
Score = 31.2 bits (71), Expect = 0.002
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPE 46
+ + D ++L F G+I+R+ + + +
Sbjct: 8 FDFNGNDEEDLPFKKGDILRIRDKPEEQ 35
>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 64
Score = 30.9 bits (70), Expect = 0.002
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPE 46
Y Y +LSF GE +++V + +
Sbjct: 9 YDYESRTETDLSFKKGERLQIVNNTEGD 36
>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 57
Score = 30.4 bits (69), Expect = 0.002
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPE 46
Y + + DEL F GE++ V++ +P
Sbjct: 8 YDFEALEEDELGFRSGEVVEVLDSSNPS 35
>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN
cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 72
Score = 30.6 bits (69), Expect = 0.003
Identities = 5/29 (17%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 19 YKYT-REDVDELSFDVGEIIRVVEYDDPE 46
+ +T + LSF G+++ ++ ++ +
Sbjct: 14 FPHTAGNNKTLLSFAQGDVLTLLIPEEKD 42
>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 55
Score = 30.1 bits (68), Expect = 0.003
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPE 46
Y Y + E++ G+I+ ++ + +
Sbjct: 7 YDYQEKSPREVTMKKGDILTLLNSTNKD 34
>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 58
Score = 30.0 bits (68), Expect = 0.004
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPE 46
Y + + +EL+F GE+I V++ D
Sbjct: 9 YDFEAVEDNELTFKHGELITVLDDSDAN 36
>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human
(Homo sapiens) [TaxId: 9606]}
Length = 65
Score = 29.8 bits (67), Expect = 0.005
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDD 44
Y Y ++LSF G+ + V+E
Sbjct: 11 YDYEAIHHEDLSFQKGDQMVVLEESG 36
>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 57
Score = 29.3 bits (66), Expect = 0.007
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPEE 47
Y + + LS GE +RV+ Y+ E
Sbjct: 7 YDFVASGDNTLSITKGEKLRVLGYNHNGE 35
>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 59
Score = 29.5 bits (66), Expect = 0.008
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDD 44
Y + + ELS +++ +++
Sbjct: 8 YDFVARNSSELSVMKDDVLEILDDRR 33
>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 29.4 bits (66), Expect = 0.008
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPE 46
Y + + +L + G+ ++E +D
Sbjct: 9 YDFQATEAHDLRLERGQEYIILEKNDLH 36
>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 67
Score = 29.4 bits (66), Expect = 0.008
Identities = 5/33 (15%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 19 YKYT-REDVDELSFDVGEIIRVVEYDDPEEQVD 50
Y + E++ G+++ ++ DP +
Sbjct: 12 YDFVPENPEMEVALKKGDLMAILSKKDPLGRDS 44
>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 29.4 bits (65), Expect = 0.012
Identities = 6/38 (15%), Positives = 16/38 (42%)
Query: 13 RLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVD 50
+L + ++S G+++ V++ DP +
Sbjct: 18 KLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQN 55
>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 29.7 bits (66), Expect = 0.013
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 19 YKYTREDVDELSFDVGEIIRVVE 41
Y D L+ G+++ V
Sbjct: 28 QDYMAPDCRFLTIHRGQVVYVFS 50
>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 29.3 bits (65), Expect = 0.014
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 27 DELSFDVGEIIRVVEYDDPEEQ 48
EL G+ + V D +
Sbjct: 38 AELPLTAGKYLYVYGDMDEDGF 59
>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor
1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 53
Score = 28.3 bits (63), Expect = 0.015
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDP 45
YT + DE+S GE + V+
Sbjct: 7 KAYTAVEGDEVSLLEGEAVEVIHKLLD 33
>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor
1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 28.3 bits (63), Expect = 0.017
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDP 45
Y + E++ G+++ VVE +
Sbjct: 9 ADYEKTSGSEMALSTGDVVEVVEKSES 35
>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli
[TaxId: 562]}
Length = 289
Score = 28.2 bits (62), Expect = 0.057
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 22 TREDVDELSFDVGEIIRVVEYDDPEEQVDKIFS 54
T++ V + E+ + Y EE++D +F+
Sbjct: 257 TQKSVIDTMQTRNELYESINYYQYEEKLDNLFA 289
>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium
channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 145
Score = 27.8 bits (61), Expect = 0.083
Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 7/34 (20%)
Query: 19 YKYTREDVD-------ELSFDVGEIIRVVEYDDP 45
Y + +SFD + + + E +
Sbjct: 30 VSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNN 63
>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus
musculus [TaxId: 10090]}
Length = 53
Score = 26.4 bits (58), Expect = 0.083
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 19 YKYTREDVDELSFDVGEIIRVVEYDDPE 46
Y Y D EL+ E +++ +
Sbjct: 5 YDYQTNDPQELALRCDEEYYLLDSSEIH 32
>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium
channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 96
Score = 26.4 bits (58), Expect = 0.16
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 19 YKYTREDVDE-------LSFDVGEIIRVVEYDDPE 46
+Y+ D+ +SF+ + + V E + +
Sbjct: 28 VRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNND 62
>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium
channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 136
Score = 26.2 bits (57), Expect = 0.24
Identities = 3/35 (8%), Positives = 11/35 (31%), Gaps = 7/35 (20%)
Query: 19 YKYTREDVD-------ELSFDVGEIIRVVEYDDPE 46
Y + ++F+ + + + E +
Sbjct: 30 VSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSND 64
>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
coenzyme M oxidoreductase/carboxylase {Xanthobacter
sp., py2 [TaxId: 35809]}
Length = 261
Score = 24.2 bits (51), Expect = 1.7
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 20 KYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLRTDTVEMWDVIVIG 69
R D ++ I ++E D E I+++ + +D I IG
Sbjct: 3 WNARNDHLTINQWATRIDEILEAPDGGE---VIYNVDENDPREYDAIFIG 49
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 22.7 bits (47), Expect = 5.5
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 3 DVILSALNLIRLLYFTYKYTREDVDELSFDVGEIIRVVEYD 43
S LN I L T T ++ L + ++ R++E D
Sbjct: 423 IPEKSDLNSILFL-MTPAETPAKMNNLITQLLQLQRLIEED 462
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 22.6 bits (47), Expect = 6.0
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 9/54 (16%)
Query: 3 DVILSALNLIRLLYFTYKYTREDVDELSFDVGEIIRVVEYDDPEEQVDKIFSLR 56
+ + + +RL YT + +D + +I + E+ + L
Sbjct: 403 EQKHADMEFMRLTIARRVYTNDHMDYI---ADALIGLK------EKFATLKGLE 447
>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 96
Score = 22.0 bits (46), Expect = 8.3
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 17 FTYKYTREDV---DELSFDVGEIIRVVEYDDP 45
F Y T++ LSF G+++ V++ D
Sbjct: 8 FDYDKTKDCGFLSQALSFRFGDVLHVIDAGDE 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.143 0.420
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 302,773
Number of extensions: 12442
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 55
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)