BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4492
(96 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53163|MNP1_YEAST 54S ribosomal protein L12, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MNP1 PE=1
SV=1
Length = 194
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 62/85 (72%), Gaps = 1/85 (1%)
Query: 12 AAAPVEEEEEKIVQSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVK 71
A + EEE + +++FTVKL +D K K +IKE+KGLL G++LV+AKKFVE+ P V+K
Sbjct: 111 AGSGAEEEAKPEAKTVFTVKLDSFDTKTKAKVIKEVKGLL-GLSLVEAKKFVEAAPKVLK 169
Query: 72 TDVTKEEAEALKASLAKVGGEVSVE 96
+V K++AE +K +L +G +VS+E
Sbjct: 170 ENVAKDDAEKIKKTLEDLGAKVSLE 194
>sp|P52815|RM12_HUMAN 39S ribosomal protein L12, mitochondrial OS=Homo sapiens GN=MRPL12
PE=1 SV=2
Length = 198
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 51/72 (70%)
Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
++ FTV+L + KV LIKEIK ++G+NLVQAKK VES+P +K +V K EAE +KA
Sbjct: 127 RTHFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIKANVAKAEAEKIKA 186
Query: 85 SLAKVGGEVSVE 96
+L VGG V +E
Sbjct: 187 ALEAVGGTVVLE 198
>sp|Q9DB15|RM12_MOUSE 39S ribosomal protein L12, mitochondrial OS=Mus musculus GN=Mrpl12
PE=1 SV=2
Length = 201
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 51/72 (70%)
Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
++ FTV+L + KV LIKEIK ++G+NLVQAKK VES+P +K +V K EAE +KA
Sbjct: 130 RTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKA 189
Query: 85 SLAKVGGEVSVE 96
+L VGG V +E
Sbjct: 190 ALEAVGGTVVLE 201
>sp|Q7YR75|RM12_BOVIN 39S ribosomal protein L12, mitochondrial OS=Bos taurus GN=MRPL12
PE=1 SV=1
Length = 198
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 51/72 (70%)
Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
++ FTV+L + KV LIKEIK ++G+NLVQAKK VES+P +K +V K EAE +KA
Sbjct: 127 RTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKA 186
Query: 85 SLAKVGGEVSVE 96
+L VGG V +E
Sbjct: 187 ALEAVGGTVVLE 198
>sp|P52827|RM12_CRICR 39S ribosomal protein L12, mitochondrial OS=Cricetus cricetus
GN=MRPL12 PE=2 SV=1
Length = 203
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 51/72 (70%)
Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
++ FTV+L + KV LIKEIK ++G+NLVQAKK VES+P +K +V K EAE +KA
Sbjct: 132 RTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKA 191
Query: 85 SLAKVGGEVSVE 96
+L VGG V +E
Sbjct: 192 ALEAVGGTVVLE 203
>sp|Q9USJ9|MNP1_SCHPO 54S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mnp1 PE=3 SV=2
Length = 173
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 28 FTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLA 87
+ +KL +D K +IKE+K LL G++LV AKKFVES P V+K ++ KE+AEA+K+ L
Sbjct: 106 WNLKLESFDAGSKAKVIKEVKSLL-GLSLVDAKKFVESAPKVLKENILKEDAEAIKSKLE 164
Query: 88 KVGGEVSVE 96
K+ +V +E
Sbjct: 165 KLSCKVVLE 173
>sp|Q4A5Y8|RL7_MYCS5 50S ribosomal protein L7/L12 OS=Mycoplasma synoviae (strain 53)
GN=rplL PE=3 SV=1
Length = 123
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 52/69 (75%), Gaps = 2/69 (2%)
Query: 29 TVKLV-KYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLA 87
+VK+V K D+ +KV +IK +K LL G +L+ AKK V+++PAVVK ++ EEAE ++A+L
Sbjct: 56 SVKVVLKADNGKKVQIIKAVKDLLGG-SLMDAKKIVDNLPAVVKENIKPEEAEPIRAALV 114
Query: 88 KVGGEVSVE 96
+ G EVSVE
Sbjct: 115 EAGAEVSVE 123
>sp|Q73JJ6|RL7_TREDE 50S ribosomal protein L7/L12 OS=Treponema denticola (strain ATCC
35405 / CIP 103919 / DSM 14222) GN=rplL PE=3 SV=1
Length = 129
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
Query: 19 EEEKIVQSLFTVKLVKYDD-KQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKE 77
EEEK + FTV L D +K+ +IKE++ ++ G+ L +AK+ VE P V+K DV+KE
Sbjct: 54 EEEK---TEFTVTLKGLSDPGKKIGVIKEVRNVIPGLGLKEAKELVEGAPKVLKEDVSKE 110
Query: 78 EAEALKASLAKVGGEVSV 95
EA +K ++ GGEV +
Sbjct: 111 EAAKIKEAITAAGGEVEI 128
>sp|B8EMS0|RL7_METSB 50S ribosomal protein L7/L12 OS=Methylocella silvestris (strain BL2
/ DSM 15510 / NCIMB 13906) GN=rplL PE=3 SV=1
Length = 126
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
Q+ FTV L + DK K+ +IKE++ + G+ L +AK VE+ P VK VTKEEAE +KA
Sbjct: 57 QTEFTVVLAAFGDK-KIEVIKEVRAVT-GLGLKEAKDLVEAAPKPVKEGVTKEEAEKIKA 114
Query: 85 SLAKVGGEVSV 95
+L K G +V +
Sbjct: 115 ALEKAGAKVEL 125
>sp|Q830Q8|RL7_ENTFA 50S ribosomal protein L7/L12 OS=Enterococcus faecalis (strain ATCC
700802 / V583) GN=rplL PE=3 SV=1
Length = 122
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
Q+ FTV+L D QKV +IK ++ G+ L +AK V+ PA VK V+KEEAEALKA
Sbjct: 53 QTEFTVELTAAGD-QKVKVIKAVREAT-GLGLKEAKAVVDGAPAPVKEAVSKEEAEALKA 110
Query: 85 SLAKVGGEVSV 95
+L +VG V+V
Sbjct: 111 ALEEVGASVTV 121
>sp|A1JIH9|RL7_YERE8 50S ribosomal protein L7/L12 OS=Yersinia enterocolitica serotype
O:8 / biotype 1B (strain 8081) GN=rplL PE=3 SV=1
Length = 122
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
Q+ F V L + D KV +IK ++G G+ L +AK VES PAV+K V K+EAE+LK
Sbjct: 53 QTEFNVVLASFGD-NKVAVIKAVRGAT-GLGLKEAKDLVESAPAVLKEGVNKDEAESLKK 110
Query: 85 SLAKVGGEVSV 95
SL + G V +
Sbjct: 111 SLEEAGAAVEI 121
>sp|B3PM75|RL7_MYCA5 50S ribosomal protein L7/L12 OS=Mycoplasma arthritidis (strain
158L3-1) GN=rplL PE=3 SV=1
Length = 123
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
++ F V L K D K+ +IK +K LL G+ L+ AKK VES P ++K +V KEEAE LKA
Sbjct: 54 KTTFNVTL-KSDGGNKLAVIKAVKDLL-GLGLMDAKKLVESAPVLLKENVKKEEAEELKA 111
Query: 85 SLAKVGGEVSVE 96
L + E++++
Sbjct: 112 KLTEAKAEITLD 123
>sp|B2IK54|RL7_BEII9 50S ribosomal protein L7/L12 OS=Beijerinckia indica subsp. indica
(strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplL PE=3
SV=1
Length = 126
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
Q+ FTV L DK K+ +IKE++G+ G+ L +AK VE+ P VK V+KEEAE +KA
Sbjct: 57 QTEFTVVLAAVGDK-KIEVIKEVRGVT-GLGLKEAKDLVEAAPKPVKEGVSKEEAEKIKA 114
Query: 85 SLAKVGGEVSV 95
+L K G +V +
Sbjct: 115 ALEKAGAKVEL 125
>sp|A1REA6|RL7_SHESW 50S ribosomal protein L7/L12 OS=Shewanella sp. (strain W3-18-1)
GN=rplL PE=3 SV=1
Length = 122
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 12 AAAPVEEEEEKIVQSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVK 71
AAA VEE Q+ F V L + D KV +IK I+G G+ L +AK E+ P VK
Sbjct: 46 AAAAVEE------QTEFNVILTAHGD-NKVAVIKAIRGAT-GLGLKEAKAMSEAAPVAVK 97
Query: 72 TDVTKEEAEALKASLAKVGGEVSV 95
V+KEEAEALK L + G V +
Sbjct: 98 EGVSKEEAEALKKELVEAGASVEI 121
>sp|A4YBZ1|RL7_SHEPC 50S ribosomal protein L7/L12 OS=Shewanella putrefaciens (strain
CN-32 / ATCC BAA-453) GN=rplL PE=3 SV=1
Length = 122
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 12 AAAPVEEEEEKIVQSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVK 71
AAA VEE Q+ F V L + D KV +IK I+G G+ L +AK E+ P VK
Sbjct: 46 AAAAVEE------QTEFNVILTAHGD-NKVAVIKAIRGAT-GLGLKEAKAMSEAAPVAVK 97
Query: 72 TDVTKEEAEALKASLAKVGGEVSV 95
V+KEEAEALK L + G V +
Sbjct: 98 EGVSKEEAEALKKELVEAGASVEI 121
>sp|Q8EK75|RL7_SHEON 50S ribosomal protein L7/L12 OS=Shewanella oneidensis (strain MR-1)
GN=rplL PE=3 SV=1
Length = 122
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 12 AAAPVEEEEEKIVQSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVK 71
AAA VEE Q+ F V L + D KV +IK I+G G+ L +AK E+ P VK
Sbjct: 46 AAAAVEE------QTEFNVILTAHGD-NKVAVIKAIRGAT-GLGLKEAKAMSEAAPVAVK 97
Query: 72 TDVTKEEAEALKASLAKVGGEVSV 95
V+KEEAEALK L + G V +
Sbjct: 98 EGVSKEEAEALKKELVEAGASVEI 121
>sp|B7MRB2|RL7_ECO81 50S ribosomal protein L7/L12 OS=Escherichia coli O81 (strain ED1a)
GN=rplL PE=3 SV=1
Length = 121
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Query: 14 APVEEEEEKIVQSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTD 73
PVE EEK + F V ++K KV +IK ++G G+ L +AK VES PA +K
Sbjct: 44 GPVETAEEK---TEFDV-ILKAAGANKVAVIKAVRGAT-GLGLKEAKDLVESAPAALKEG 98
Query: 74 VTKEEAEALKASLAKVGGEVSV 95
V+K++AEALK +L + G EV V
Sbjct: 99 VSKDDAEALKKALEEAGAEVEV 120
>sp|Q6KHB0|RL7_MYCMO 50S ribosomal protein L7/L12 OS=Mycoplasma mobile (strain ATCC
43663 / 163K / NCTC 11711) GN=rplL PE=3 SV=1
Length = 124
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 42/58 (72%)
Query: 39 QKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGGEVSVE 96
KVP+IK+++ + ++L+ AKK V+S PA +K +V EEAE +KA+ A +G E+S++
Sbjct: 67 NKVPVIKKVREISPELSLMDAKKLVDSAPAKLKDNVKPEEAEEIKAAFAALGAEISID 124
>sp|P41189|RL7_LIBAF 50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3
SV=1
Length = 125
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 28 FTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLA 87
F V L +D K+K+ +IKE++ + E + L +AK FVES P +KT V+K+EAE LK L
Sbjct: 58 FEVFLEGFDAKKKISVIKEVRAITE-LGLKEAKDFVESAPKSLKTGVSKDEAEELKKKLE 116
Query: 88 KVGGEV 93
G +
Sbjct: 117 AAGATI 122
>sp|C6DHR4|RL7_PECCP 50S ribosomal protein L7/L12 OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=rplL PE=3 SV=1
Length = 121
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 39 QKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGGEVSV 95
KV +IK ++G G+ L +AK VES PAV+K V+K++AEALK SL + G EV V
Sbjct: 65 NKVAVIKAVRGAT-GLGLKEAKDLVESAPAVLKEGVSKDDAEALKKSLEEAGAEVEV 120
>sp|A2C031|RL7_PROM1 50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain
NATL1A) GN=rplL PE=3 SV=1
Length = 131
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 28 FTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLA 87
F V L +D K+ ++KE++ G+ L +AK VE+ P +K TKE+AEALK ++
Sbjct: 64 FEVVLESFDASSKIKVLKEVRNAT-GLGLGEAKALVEAAPKTIKEGATKEDAEALKKAIE 122
Query: 88 KVGGEVSV 95
VGG+V++
Sbjct: 123 AVGGKVTL 130
>sp|B1JJJ7|RL7_YERPY 50S ribosomal protein L7/L12 OS=Yersinia pseudotuberculosis
serotype O:3 (strain YPIII) GN=rplL PE=3 SV=1
Length = 122
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
Q+ F V L + + KV +IK ++G G+ L +AK VES PAV+K V K+EAE LK
Sbjct: 53 QTEFDVVLASFGE-NKVAVIKAVRGAT-GLGLKEAKDLVESAPAVLKEGVNKDEAETLKK 110
Query: 85 SLAKVGGEVSV 95
SL + G V +
Sbjct: 111 SLEEAGASVEI 121
>sp|Q66FQ3|RL7_YERPS 50S ribosomal protein L7/L12 OS=Yersinia pseudotuberculosis
serotype I (strain IP32953) GN=rplL PE=3 SV=1
Length = 122
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
Q+ F V L + + KV +IK ++G G+ L +AK VES PAV+K V K+EAE LK
Sbjct: 53 QTEFDVVLASFGE-NKVAVIKAVRGAT-GLGLKEAKDLVESAPAVLKEGVNKDEAETLKK 110
Query: 85 SLAKVGGEVSV 95
SL + G V +
Sbjct: 111 SLEEAGASVEI 121
>sp|A4TS30|RL7_YERPP 50S ribosomal protein L7/L12 OS=Yersinia pestis (strain Pestoides
F) GN=rplL PE=3 SV=1
Length = 122
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
Q+ F V L + + KV +IK ++G G+ L +AK VES PAV+K V K+EAE LK
Sbjct: 53 QTEFDVVLASFGE-NKVAVIKAVRGAT-GLGLKEAKDLVESAPAVLKEGVNKDEAETLKK 110
Query: 85 SLAKVGGEVSV 95
SL + G V +
Sbjct: 111 SLEEAGASVEI 121
>sp|Q1CN79|RL7_YERPN 50S ribosomal protein L7/L12 OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=rplL PE=3 SV=1
Length = 122
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
Q+ F V L + + KV +IK ++G G+ L +AK VES PAV+K V K+EAE LK
Sbjct: 53 QTEFDVVLASFGE-NKVAVIKAVRGAT-GLGLKEAKDLVESAPAVLKEGVNKDEAETLKK 110
Query: 85 SLAKVGGEVSV 95
SL + G V +
Sbjct: 111 SLEEAGASVEI 121
>sp|Q8ZAP4|RL7_YERPE 50S ribosomal protein L7/L12 OS=Yersinia pestis GN=rplL PE=3 SV=1
Length = 122
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
Q+ F V L + + KV +IK ++G G+ L +AK VES PAV+K V K+EAE LK
Sbjct: 53 QTEFDVVLASFGE-NKVAVIKAVRGAT-GLGLKEAKDLVESAPAVLKEGVNKDEAETLKK 110
Query: 85 SLAKVGGEVSV 95
SL + G V +
Sbjct: 111 SLEEAGASVEI 121
>sp|B2K111|RL7_YERPB 50S ribosomal protein L7/L12 OS=Yersinia pseudotuberculosis
serotype IB (strain PB1/+) GN=rplL PE=3 SV=1
Length = 122
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
Q+ F V L + + KV +IK ++G G+ L +AK VES PAV+K V K+EAE LK
Sbjct: 53 QTEFDVVLASFGE-NKVAVIKAVRGAT-GLGLKEAKDLVESAPAVLKEGVNKDEAETLKK 110
Query: 85 SLAKVGGEVSV 95
SL + G V +
Sbjct: 111 SLEEAGASVEI 121
>sp|Q1C1U0|RL7_YERPA 50S ribosomal protein L7/L12 OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=rplL PE=3 SV=1
Length = 122
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
Q+ F V L + + KV +IK ++G G+ L +AK VES PAV+K V K+EAE LK
Sbjct: 53 QTEFDVVLASFGE-NKVAVIKAVRGAT-GLGLKEAKDLVESAPAVLKEGVNKDEAETLKK 110
Query: 85 SLAKVGGEVSV 95
SL + G V +
Sbjct: 111 SLEEAGASVEI 121
>sp|A7FNI4|RL7_YERP3 50S ribosomal protein L7/L12 OS=Yersinia pseudotuberculosis
serotype O:1b (strain IP 31758) GN=rplL PE=3 SV=1
Length = 122
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
Q+ F V L + + KV +IK ++G G+ L +AK VES PAV+K V K+EAE LK
Sbjct: 53 QTEFDVVLASFGE-NKVAVIKAVRGAT-GLGLKEAKDLVESAPAVLKEGVNKDEAETLKK 110
Query: 85 SLAKVGGEVSV 95
SL + G V +
Sbjct: 111 SLEEAGASVEI 121
>sp|A9H3S4|RL7_GLUDA 50S ribosomal protein L7/L12 OS=Gluconacetobacter diazotrophicus
(strain ATCC 49037 / DSM 5601 / PAl5) GN=rplL PE=3 SV=1
Length = 125
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
Q+ FTV L K DK K+ +IKEI+G+ G+ L +AK VE P VK V K+EAE +K
Sbjct: 56 QTEFTVVLAKAGDK-KINVIKEIRGIT-GLGLKEAKDLVEGAPKTVKEGVNKDEAEKIKK 113
Query: 85 SLAKVGGEVSV 95
L G V V
Sbjct: 114 LLEDNGASVEV 124
>sp|A9R0H7|RL7_YERPG 50S ribosomal protein L7/L12 OS=Yersinia pestis bv. Antiqua (strain
Angola) GN=rplL PE=3 SV=1
Length = 130
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
Q+ F V L + + KV +IK ++G G+ L +AK VES PAV+K V K+EAE LK
Sbjct: 61 QTEFDVVLASFGE-NKVAVIKAVRGAT-GLGLKEAKDLVESAPAVLKEGVNKDEAETLKK 118
Query: 85 SLAKVGGEVSV 95
SL + G V +
Sbjct: 119 SLEEAGASVEI 129
>sp|A9W8N7|RL7_METEP 50S ribosomal protein L7/L12 OS=Methylobacterium extorquens (strain
PA1) GN=rplL PE=3 SV=1
Length = 125
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
Q+ FTV L DK K+ +IKE++ + G+ L +AK VE P VK TK+EAE LKA
Sbjct: 56 QTEFTVVLASAGDK-KIEVIKEVRAIT-GLGLKEAKDLVEGAPKPVKEGATKDEAEKLKA 113
Query: 85 SLAKVGGEVSV 95
L K G +V +
Sbjct: 114 QLEKAGAKVEL 124
>sp|B7KN44|RL7_METC4 50S ribosomal protein L7/L12 OS=Methylobacterium chloromethanicum
(strain CM4 / NCIMB 13688) GN=rplL PE=3 SV=1
Length = 125
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 25 QSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKA 84
Q+ FTV L DK K+ +IKE++ + G+ L +AK VE P VK TK+EAE LKA
Sbjct: 56 QTEFTVVLASAGDK-KIEVIKEVRAIT-GLGLKEAKDLVEGAPKPVKEGATKDEAEKLKA 113
Query: 85 SLAKVGGEVSV 95
L K G +V +
Sbjct: 114 QLEKAGAKVEL 124
>sp|Q3YUZ8|RL7_SHISS 50S ribosomal protein L7/L12 OS=Shigella sonnei (strain Ss046)
GN=rplL PE=3 SV=3
Length = 121
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 32 LVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGG 91
++K KV +IK ++G G+ L +AK VES PA +K V+K++AEALK SL + G
Sbjct: 58 ILKAAGANKVAVIKAVRGAT-GLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGA 116
Query: 92 EVSV 95
EV V
Sbjct: 117 EVEV 120
>sp|A8AKU0|RL7_CITK8 50S ribosomal protein L7/L12 OS=Citrobacter koseri (strain ATCC
BAA-895 / CDC 4225-83 / SGSC4696) GN=rplL PE=3 SV=1
Length = 121
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 32 LVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGG 91
++K KV +IK ++G G+ L +AK VES PA +K V+K++AEALK SL + G
Sbjct: 58 ILKAAGANKVAVIKAVRGAT-GLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGA 116
Query: 92 EVSV 95
EV V
Sbjct: 117 EVEV 120
>sp|Q4A968|RL7_MYCHJ 50S ribosomal protein L7/L12 OS=Mycoplasma hyopneumoniae (strain J
/ ATCC 25934 / NCTC 10110) GN=rplL PE=3 SV=1
Length = 121
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 38 KQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGGEVSVE 96
+QKV +IK +K LL G++L+ AKK V++ P+V+K + EEAE KA L G EVS++
Sbjct: 64 QQKVAVIKVVKDLL-GLSLMDAKKLVDAAPSVLKEAIKPEEAEEYKAKLVAAGAEVSID 121
>sp|Q5ZZS0|RL7_MYCH2 50S ribosomal protein L7/L12 OS=Mycoplasma hyopneumoniae (strain
232) GN=rplL PE=3 SV=1
Length = 121
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 38 KQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGGEVSVE 96
+QKV +IK +K LL G++L+ AKK V++ P+V+K + EEAE KA L G EVS++
Sbjct: 64 QQKVAVIKVVKDLL-GLSLMDAKKLVDAAPSVLKEAIKPEEAEEYKAKLVAAGAEVSID 121
>sp|P0A299|RL7_SALTY 50S ribosomal protein L7/L12 OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=rplL PE=3 SV=2
Length = 121
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 32 LVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGG 91
++K KV +IK ++G G+ L +AK VES PA +K V+K++AEALK SL + G
Sbjct: 58 ILKAAGANKVAVIKAVRGAT-GLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGA 116
Query: 92 EVSV 95
EV V
Sbjct: 117 EVEV 120
>sp|P0A2A0|RL7_SALTI 50S ribosomal protein L7/L12 OS=Salmonella typhi GN=rplL PE=3 SV=2
Length = 121
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 32 LVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGG 91
++K KV +IK ++G G+ L +AK VES PA +K V+K++AEALK SL + G
Sbjct: 58 ILKAAGANKVAVIKAVRGAT-GLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGA 116
Query: 92 EVSV 95
EV V
Sbjct: 117 EVEV 120
>sp|B4TQJ4|RL7_SALSV 50S ribosomal protein L7/L12 OS=Salmonella schwarzengrund (strain
CVM19633) GN=rplL PE=3 SV=1
Length = 121
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 32 LVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGG 91
++K KV +IK ++G G+ L +AK VES PA +K V+K++AEALK SL + G
Sbjct: 58 ILKAAGANKVAVIKAVRGAT-GLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGA 116
Query: 92 EVSV 95
EV V
Sbjct: 117 EVEV 120
>sp|B5BJQ2|RL7_SALPK 50S ribosomal protein L7/L12 OS=Salmonella paratyphi A (strain
AKU_12601) GN=rplL PE=3 SV=1
Length = 121
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 32 LVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGG 91
++K KV +IK ++G G+ L +AK VES PA +K V+K++AEALK SL + G
Sbjct: 58 ILKAAGANKVAVIKAVRGAT-GLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGA 116
Query: 92 EVSV 95
EV V
Sbjct: 117 EVEV 120
>sp|C0Q2R6|RL7_SALPC 50S ribosomal protein L7/L12 OS=Salmonella paratyphi C (strain
RKS4594) GN=rplL PE=3 SV=1
Length = 121
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 32 LVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGG 91
++K KV +IK ++G G+ L +AK VES PA +K V+K++AEALK SL + G
Sbjct: 58 ILKAAGANKVAVIKAVRGAT-GLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGA 116
Query: 92 EVSV 95
EV V
Sbjct: 117 EVEV 120
>sp|A9N0J3|RL7_SALPB 50S ribosomal protein L7/L12 OS=Salmonella paratyphi B (strain ATCC
BAA-1250 / SPB7) GN=rplL PE=3 SV=1
Length = 121
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 32 LVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGG 91
++K KV +IK ++G G+ L +AK VES PA +K V+K++AEALK SL + G
Sbjct: 58 ILKAAGANKVAVIKAVRGAT-GLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGA 116
Query: 92 EVSV 95
EV V
Sbjct: 117 EVEV 120
>sp|Q5PK94|RL7_SALPA 50S ribosomal protein L7/L12 OS=Salmonella paratyphi A (strain ATCC
9150 / SARB42) GN=rplL PE=3 SV=3
Length = 121
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 32 LVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGG 91
++K KV +IK ++G G+ L +AK VES PA +K V+K++AEALK SL + G
Sbjct: 58 ILKAAGANKVAVIKAVRGAT-GLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGA 116
Query: 92 EVSV 95
EV V
Sbjct: 117 EVEV 120
>sp|B4T0Y8|RL7_SALNS 50S ribosomal protein L7/L12 OS=Salmonella newport (strain SL254)
GN=rplL PE=3 SV=1
Length = 121
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 32 LVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGG 91
++K KV +IK ++G G+ L +AK VES PA +K V+K++AEALK SL + G
Sbjct: 58 ILKAAGANKVAVIKAVRGAT-GLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGA 116
Query: 92 EVSV 95
EV V
Sbjct: 117 EVEV 120
>sp|B4TCS3|RL7_SALHS 50S ribosomal protein L7/L12 OS=Salmonella heidelberg (strain
SL476) GN=rplL PE=3 SV=1
Length = 121
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 32 LVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGG 91
++K KV +IK ++G G+ L +AK VES PA +K V+K++AEALK SL + G
Sbjct: 58 ILKAAGANKVAVIKAVRGAT-GLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGA 116
Query: 92 EVSV 95
EV V
Sbjct: 117 EVEV 120
>sp|B5RFK2|RL7_SALG2 50S ribosomal protein L7/L12 OS=Salmonella gallinarum (strain
287/91 / NCTC 13346) GN=rplL PE=3 SV=1
Length = 121
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 32 LVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGG 91
++K KV +IK ++G G+ L +AK VES PA +K V+K++AEALK SL + G
Sbjct: 58 ILKAAGANKVAVIKAVRGAT-GLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGA 116
Query: 92 EVSV 95
EV V
Sbjct: 117 EVEV 120
>sp|B5QYD7|RL7_SALEP 50S ribosomal protein L7/L12 OS=Salmonella enteritidis PT4 (strain
P125109) GN=rplL PE=3 SV=1
Length = 121
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 32 LVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGG 91
++K KV +IK ++G G+ L +AK VES PA +K V+K++AEALK SL + G
Sbjct: 58 ILKAAGANKVAVIKAVRGAT-GLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGA 116
Query: 92 EVSV 95
EV V
Sbjct: 117 EVEV 120
>sp|B5FQJ8|RL7_SALDC 50S ribosomal protein L7/L12 OS=Salmonella dublin (strain
CT_02021853) GN=rplL PE=3 SV=1
Length = 121
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 32 LVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGG 91
++K KV +IK ++G G+ L +AK VES PA +K V+K++AEALK SL + G
Sbjct: 58 ILKAAGANKVAVIKAVRGAT-GLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGA 116
Query: 92 EVSV 95
EV V
Sbjct: 117 EVEV 120
>sp|Q57H70|RL7_SALCH 50S ribosomal protein L7/L12 OS=Salmonella choleraesuis (strain
SC-B67) GN=rplL PE=3 SV=3
Length = 121
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 32 LVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGG 91
++K KV +IK ++G G+ L +AK VES PA +K V+K++AEALK SL + G
Sbjct: 58 ILKAAGANKVAVIKAVRGAT-GLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGA 116
Query: 92 EVSV 95
EV V
Sbjct: 117 EVEV 120
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.321
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,756,596
Number of Sequences: 539616
Number of extensions: 1012495
Number of successful extensions: 4606
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 3833
Number of HSP's gapped (non-prelim): 735
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)