Query psy4492
Match_columns 96
No_of_seqs 120 out of 1018
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 18:28:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4492.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4492hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ftc_E L12MT, MRP-L12, 39S rib 100.0 2.3E-34 7.9E-39 206.3 10.0 77 20-96 61-137 (137)
2 1ctf_A Ribosomal protein L7/L1 100.0 9.8E-32 3.3E-36 176.1 6.5 71 23-95 3-73 (74)
3 2j01_L 50S ribosomal protein L 100.0 1.4E-30 4.9E-35 184.4 9.7 71 22-95 54-124 (125)
4 2zjq_5 50S ribosomal protein L 100.0 2.7E-30 9.2E-35 182.4 9.5 71 22-95 51-121 (122)
5 3sgf_J 50S ribosomal protein L 100.0 1.2E-31 4.1E-36 189.2 0.1 73 21-95 48-120 (121)
6 1dd3_A 50S ribosomal protein L 100.0 8.7E-30 3E-34 181.1 7.9 73 21-95 52-127 (128)
7 2cp9_A EF-TS, EF-TSMT, elongat 85.8 0.47 1.6E-05 29.5 2.3 28 41-69 10-37 (64)
8 1aip_C EF-TS, elongation facto 73.2 3 0.0001 30.9 3.4 27 40-67 3-29 (196)
9 1xb2_B EF-TS, elongation facto 70.8 3.3 0.00011 32.1 3.3 26 41-67 5-30 (291)
10 1q08_A Zn(II)-responsive regul 64.4 9.7 0.00033 23.4 4.0 25 39-65 4-28 (99)
11 2jml_A DNA binding domain/tran 62.5 5.6 0.00019 24.0 2.6 27 39-67 51-78 (81)
12 1mul_A NS2, HU-2, DNA binding 49.5 11 0.00037 23.4 2.3 35 39-74 2-36 (90)
13 1b8z_A Protein (histonelike pr 47.7 11 0.00039 23.2 2.2 35 39-74 2-36 (90)
14 3rhi_A DNA-binding protein HU; 47.5 10 0.00035 23.8 2.0 35 39-74 5-39 (93)
15 1r8e_A Multidrug-efflux transp 47.0 18 0.00061 25.7 3.5 27 38-66 50-76 (278)
16 2o97_B NS1, HU-1, DNA-binding 45.5 11 0.00039 23.3 2.0 35 39-74 2-36 (90)
17 1p71_A DNA-binding protein HU; 45.5 12 0.00043 23.3 2.2 35 39-74 2-36 (94)
18 3c4i_A DNA-binding protein HU 45.0 13 0.00043 23.6 2.2 35 39-74 2-36 (99)
19 3gp4_A Transcriptional regulat 42.1 27 0.00092 23.5 3.6 25 39-65 47-71 (142)
20 1owf_A IHF-alpha, integration 41.5 16 0.00054 23.1 2.2 35 39-74 4-38 (99)
21 3gpv_A Transcriptional regulat 39.2 40 0.0014 22.7 4.1 25 39-65 61-85 (148)
22 2zhg_A Redox-sensitive transcr 37.6 34 0.0011 23.3 3.5 26 39-66 55-80 (154)
23 1exe_A Transcription factor 1; 36.9 11 0.00038 23.9 0.9 36 39-75 2-37 (99)
24 3a1y_A 50S ribosomal protein P 34.1 19 0.00066 21.3 1.6 16 79-94 19-34 (58)
25 1q06_A Transcriptional regulat 32.3 37 0.0013 22.4 3.0 25 39-65 45-69 (135)
26 1owf_B IHF-beta, integration H 31.9 28 0.00096 21.5 2.2 36 39-74 2-37 (94)
27 2np2_A HBB; protein-DNA comple 31.8 21 0.00072 22.9 1.6 35 39-74 10-49 (108)
28 3m6z_A Topoisomerase V; helix- 31.7 52 0.0018 25.7 4.1 46 45-90 332-378 (380)
29 2vz4_A Tipal, HTH-type transcr 31.6 61 0.0021 20.3 3.9 25 39-65 46-70 (108)
30 3fxd_A Protein ICMQ; helix bun 29.2 36 0.0012 20.7 2.2 19 71-89 2-20 (57)
31 3hh0_A Transcriptional regulat 28.4 55 0.0019 22.0 3.4 27 39-67 49-75 (146)
32 1r8d_A Transcription activator 27.0 53 0.0018 20.6 2.9 26 39-66 47-72 (109)
33 1in0_A YAJQ protein, HI1034; a 26.1 35 0.0012 24.6 2.1 61 29-94 47-122 (163)
34 2lbf_A 60S acidic ribosomal pr 25.4 26 0.0009 21.5 1.2 16 79-94 25-40 (69)
35 3qao_A LMO0526 protein, MERR-l 25.4 55 0.0019 24.0 3.1 27 39-67 48-74 (249)
36 2lbf_B 60S acidic ribosomal pr 25.3 30 0.001 21.4 1.4 16 79-94 21-36 (70)
37 1v5i_B POIA1, IA-1=serine prot 25.0 36 0.0012 20.3 1.7 25 69-93 8-32 (76)
38 1b0n_B Protein (SINI protein); 24.5 78 0.0027 18.8 3.2 25 39-65 14-38 (57)
39 3a1y_G Acidic ribosomal protei 24.0 1.1E+02 0.0039 22.8 4.7 46 38-95 6-54 (284)
40 1dd4_C 50S ribosomal protein L 23.3 70 0.0024 17.7 2.6 20 46-66 6-25 (40)
41 1uta_A FTSN, MSGA, cell divisi 20.8 66 0.0023 19.0 2.3 20 75-94 19-38 (81)
42 2a4x_A Mitomycin-binding prote 20.7 85 0.0029 19.1 2.9 20 75-94 81-100 (138)
43 1u7i_A Hypothetical protein; s 20.6 87 0.003 19.6 3.0 20 75-95 88-107 (136)
44 2dg6_A Putative transcriptiona 20.4 72 0.0025 23.2 2.9 27 39-66 45-71 (222)
45 2zkr_l 60S ribosomal protein L 20.3 70 0.0024 21.8 2.7 16 80-95 131-146 (148)
No 1
>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=2.3e-34 Score=206.30 Aligned_cols=77 Identities=49% Similarity=0.706 Sum_probs=72.9
Q ss_pred hhhhhcceeEEEEeeCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcChhhhhcCCHHHHHHHHHHHHhCCcEEEeC
Q psy4492 20 EEKIVQSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGGEVSVE 96 (96)
Q Consensus 20 ~~~~ekt~f~V~L~~~~~~kKi~vIK~VR~i~t~LgLkEAK~lVe~~P~~iKe~v~keeAe~ik~kle~aGa~veie 96 (96)
++.+|||+|||+|++||+++||+|||+||+++|||||||||+|||++|++||+|+||+|||+||++|+++||+|+||
T Consensus 61 ~~~eEKteFdV~L~~~~a~~KI~VIK~VR~i~TgLgLkEAK~lVe~aP~~iKe~vsKeeAE~iK~kLe~aGA~Vele 137 (137)
T 2ftc_E 61 PKQKERTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE 137 (137)
T ss_pred cccccCCeeEEEeeccCccchhHHHHHHHHhccCCChHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 34578999999999999779999999999965899999999999999999999999999999999999999999986
No 2
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=99.97 E-value=9.8e-32 Score=176.15 Aligned_cols=71 Identities=42% Similarity=0.607 Sum_probs=65.5
Q ss_pred hhcceeEEEEeeCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcChhhhhcCCHHHHHHHHHHHHhCCcEEEe
Q psy4492 23 IVQSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGGEVSV 95 (96)
Q Consensus 23 ~ekt~f~V~L~~~~~~kKi~vIK~VR~i~t~LgLkEAK~lVe~~P~~iKe~v~keeAe~ik~kle~aGa~vei 95 (96)
+|||+|||+|+++| .+||+|||+||++ |||||+|||+|||++|++||+|+||+|||+|+++|+++||+|+|
T Consensus 3 eEkteFdV~L~~~~-~~Ki~vIK~VR~i-tgLgLkEAK~lVe~~P~~iKe~vsKeeAe~ik~~Le~aGA~Vel 73 (74)
T 1ctf_A 3 EEKTEFDVILKAAG-ANKVAVIKAVRGA-TGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 73 (74)
T ss_dssp ----CEEEEEEECG-GGHHHHHHHHHHH-HCCCHHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTCEEEE
T ss_pred cccceeEEEEeeCC-cchhHHHHHHHHH-cCCCHHHHHHHHHhCcHHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence 57999999999998 4999999999998 89999999999999999999999999999999999999999997
No 3
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=99.97 E-value=1.4e-30 Score=184.42 Aligned_cols=71 Identities=34% Similarity=0.475 Sum_probs=68.4
Q ss_pred hhhcceeEEEEeeCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcChhhhhcCCHHHHHHHHHHHHhCCcEEEe
Q psy4492 22 KIVQSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGGEVSV 95 (96)
Q Consensus 22 ~~ekt~f~V~L~~~~~~kKi~vIK~VR~i~t~LgLkEAK~lVe~~P~~iKe~v~keeAe~ik~kle~aGa~vei 95 (96)
.+|||+|||+|++|| ++||+|||+||++ |||||+|||+|||++ ++||+|+||+|||+||++|+++||+|+|
T Consensus 54 ~eEKteFdV~L~~~~-~~KI~VIK~VR~i-tgLgLkEAK~lVe~a-~~iKe~vsKeeAE~iK~kLe~aGA~Vel 124 (125)
T 2j01_L 54 AEEKTEFDVILKEAG-AKKLEVIKELRAI-TGLGLKEAKDLAEKG-GPVKEGVSKQEAEEIKKKLEAVGAVVEL 124 (125)
T ss_pred ccccceeEEEEeeCC-cchHHHHHHHHHh-cCCCHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCEEEe
Confidence 478999999999998 4999999999998 999999999999999 9999999999999999999999999997
No 4
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=99.96 E-value=2.7e-30 Score=182.44 Aligned_cols=71 Identities=37% Similarity=0.546 Sum_probs=68.4
Q ss_pred hhhcceeEEEEeeCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcChhhhhcCCHHHHHHHHHHHHhCCcEEEe
Q psy4492 22 KIVQSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGGEVSV 95 (96)
Q Consensus 22 ~~ekt~f~V~L~~~~~~kKi~vIK~VR~i~t~LgLkEAK~lVe~~P~~iKe~v~keeAe~ik~kle~aGa~vei 95 (96)
.+|||+|||+|++|| ++||+|||+||++ |||||+|||+|||++ ++||+|+||+|||+||++|+++||+|+|
T Consensus 51 ~eEKteFdV~L~~~~-~~KI~VIK~VR~i-tgLgLkEAK~lVe~a-~~iKe~vsKeeAE~iK~kLe~aGA~Vel 121 (122)
T 2zjq_5 51 AEEKTEFDVVLIDAG-ASKINVIKEIRGI-TGLGLKEAKDMSEKG-GVLKEGVAKDEAEKMKAQLEAAGARVEL 121 (122)
T ss_pred ccccceeEEEEecCC-cchHHHHHHHHHh-cCCCHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCEEEe
Confidence 478999999999998 4999999999998 999999999999999 9999999999999999999999999997
No 5
>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3 2gyc_3 1rqt_A
Probab=99.96 E-value=1.2e-31 Score=189.16 Aligned_cols=73 Identities=41% Similarity=0.589 Sum_probs=0.0
Q ss_pred hhhhcceeEEEEeeCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcChhhhhcCCHHHHHHHHHHHHhCCcEEEe
Q psy4492 21 EKIVQSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVTKEEAEALKASLAKVGGEVSV 95 (96)
Q Consensus 21 ~~~ekt~f~V~L~~~~~~kKi~vIK~VR~i~t~LgLkEAK~lVe~~P~~iKe~v~keeAe~ik~kle~aGa~vei 95 (96)
..+|||+|||+|+++|+ +||+|||+||++ |||||+|||+|||++|++||+|+||+|||+||++|+++||+|+|
T Consensus 48 a~eEKteFdV~L~~~g~-~Ki~VIK~VR~i-tgLgLkEAK~lVe~aP~~iKe~vsKeeAE~ik~kLe~aGA~Vel 120 (121)
T 3sgf_J 48 AAEEKTEFDVILKAAGA-NKVAVIKAVRGA-TGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120 (121)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccccceeEEEEecCch-hhHHHHHHHHHh-cCCCHHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEEee
Confidence 45789999999999985 899999999998 99999999999999999999999999999999999999999987
No 6
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Probab=99.96 E-value=8.7e-30 Score=181.08 Aligned_cols=73 Identities=34% Similarity=0.566 Sum_probs=69.9
Q ss_pred hhhhcceeEEEEeeCCCCCchHHHHHHHHhhcCCCHHHHHHHHhhcCh---hhhhcCCHHHHHHHHHHHHhCCcEEEe
Q psy4492 21 EKIVQSLFTVKLVKYDDKQKVPLIKEIKGLLEGMNLVQAKKFVESIPA---VVKTDVTKEEAEALKASLAKVGGEVSV 95 (96)
Q Consensus 21 ~~~ekt~f~V~L~~~~~~kKi~vIK~VR~i~t~LgLkEAK~lVe~~P~---~iKe~v~keeAe~ik~kle~aGa~vei 95 (96)
..+|||+|||+|++|| ++||+|||+||++ |||||||||+|||++|+ +||+|+||+|||+||++|+++||+|+|
T Consensus 52 a~eEKteFdV~L~~~~-~~KI~VIK~VR~i-tgLgLKEAK~lVe~aP~~~~~iKe~vsKeeAE~iK~kLe~aGA~Vel 127 (128)
T 1dd3_A 52 AQEEKTEFDVVLKSFG-QNKIQVIKVVREI-TGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVEL 127 (128)
T ss_dssp HHHTTSSEEEEEEECT-TCHHHHHHHHHHH-HCCCHHHHHHHHTTTTSTTCEEEEEECHHHHHHHHHHHHHTTCEEEE
T ss_pred cccccceeeEEEecCC-cchHHHHHHHHHh-cCCCHHHHHHHHHhCCccchHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence 4578999999999998 4999999999998 89999999999999999 999999999999999999999999997
No 7
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=85.78 E-value=0.47 Score=29.55 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=23.2
Q ss_pred hHHHHHHHHhhcCCCHHHHHHHHhhcChh
Q psy4492 41 VPLIKEIKGLLEGMNLVQAKKFVESIPAV 69 (96)
Q Consensus 41 i~vIK~VR~i~t~LgLkEAK~lVe~~P~~ 69 (96)
...||++|+- ||.|++++|+.++.+-.-
T Consensus 10 ~~~Vk~LRe~-TGag~~dcKkAL~e~~GD 37 (64)
T 2cp9_A 10 KELLMKLRRK-TGYSFVNCKKALETCGGD 37 (64)
T ss_dssp CHHHHHHHHH-HCCCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcCCC
Confidence 4789999997 899999999977665433
No 8
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=73.24 E-value=3 Score=30.89 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=23.0
Q ss_pred chHHHHHHHHhhcCCCHHHHHHHHhhcC
Q psy4492 40 KVPLIKEIKGLLEGMNLVQAKKFVESIP 67 (96)
Q Consensus 40 Ki~vIK~VR~i~t~LgLkEAK~lVe~~P 67 (96)
..+.||++|+- ||.|++++|+.+...-
T Consensus 3 ~a~~VKeLRe~-TGagmmdCKkAL~e~~ 29 (196)
T 1aip_C 3 QMELIKKLREA-TGAGMMDVKRALEDAG 29 (196)
T ss_dssp HHHHHHHHHHH-HCCCHHHHHHHHHHTT
T ss_pred hHHHHHHHHHH-hCCCHHHHHHHHHHcC
Confidence 35789999997 9999999999776654
No 9
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=70.78 E-value=3.3 Score=32.07 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=22.8
Q ss_pred hHHHHHHHHhhcCCCHHHHHHHHhhcC
Q psy4492 41 VPLIKEIKGLLEGMNLVQAKKFVESIP 67 (96)
Q Consensus 41 i~vIK~VR~i~t~LgLkEAK~lVe~~P 67 (96)
.+.||++|+. ||.|++++|+.+....
T Consensus 5 a~~VKeLRe~-TGagmmdCKKAL~e~~ 30 (291)
T 1xb2_B 5 KELLMKLRRK-TGYSFINCKKALETCG 30 (291)
T ss_dssp HHHHHHHHHH-HCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHcC
Confidence 4789999997 9999999999887765
No 10
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=64.38 E-value=9.7 Score=23.41 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=21.7
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhh
Q psy4492 39 QKVPLIKEIKGLLEGMNLVQAKKFVES 65 (96)
Q Consensus 39 kKi~vIK~VR~i~t~LgLkEAK~lVe~ 65 (96)
.++..|+..|.+ ||+|.|-|.+++.
T Consensus 4 ~rL~~I~~lr~l--GfsL~eIk~~l~~ 28 (99)
T 1q08_A 4 QRLKFIRHARQL--GFSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHHHT--TCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 367889999995 9999999999974
No 11
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=62.47 E-value=5.6 Score=24.05 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=21.4
Q ss_pred CchHHHHHHH-HhhcCCCHHHHHHHHhhcC
Q psy4492 39 QKVPLIKEIK-GLLEGMNLVQAKKFVESIP 67 (96)
Q Consensus 39 kKi~vIK~VR-~i~t~LgLkEAK~lVe~~P 67 (96)
..+..|+.+| + .|++|.+.+.++...|
T Consensus 51 ~~l~~I~~l~~~--~G~sl~ei~~~l~~~~ 78 (81)
T 2jml_A 51 EAVRRVARLIQE--EGLSVSEAIAQVKTEP 78 (81)
T ss_dssp HHHHHHHHHHHH--TSTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHHccC
Confidence 4566677777 5 3999999999998876
No 12
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=49.51 E-value=11 Score=23.36 Aligned_cols=35 Identities=29% Similarity=0.287 Sum_probs=29.3
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhhcChhhhhcC
Q psy4492 39 QKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDV 74 (96)
Q Consensus 39 kKi~vIK~VR~i~t~LgLkEAK~lVe~~P~~iKe~v 74 (96)
+|-.+|+.|.+- ++|.-++++..|+.+-..|.+.+
T Consensus 2 ~k~eli~~ia~~-~~ls~~~~~~~l~~~~~~i~~~L 36 (90)
T 1mul_A 2 NKTQLIDVIAEK-AELSKTQAKAALESTLAAITESL 36 (90)
T ss_dssp CHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH
Confidence 356889999986 79999999999999988777654
No 13
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=47.73 E-value=11 Score=23.20 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=29.3
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhhcChhhhhcC
Q psy4492 39 QKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDV 74 (96)
Q Consensus 39 kKi~vIK~VR~i~t~LgLkEAK~lVe~~P~~iKe~v 74 (96)
+|-.+|+.|.+- ++|.-++++..|+.+-..|.+.+
T Consensus 2 tk~eli~~ia~~-~~ls~~~~~~~l~~~~~~i~~~L 36 (90)
T 1b8z_A 2 NKKELIDRVAKK-AGAKKKDVKLILDTILETITEAL 36 (90)
T ss_dssp CHHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHH
Confidence 356899999986 79999999999999988777654
No 14
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=47.51 E-value=10 Score=23.78 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=28.5
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhhcChhhhhcC
Q psy4492 39 QKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDV 74 (96)
Q Consensus 39 kKi~vIK~VR~i~t~LgLkEAK~lVe~~P~~iKe~v 74 (96)
+|-.+|+.|.+- ++|.-++++..|+.+-..|.+.+
T Consensus 5 tk~eLi~~ia~~-~~lsk~~~~~~v~~~~~~i~~~L 39 (93)
T 3rhi_A 5 NKTELIKNVAQN-AEISQKEATVVVQTVVESITNTL 39 (93)
T ss_dssp --CHHHHHHHHH-HTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHH
Confidence 466899999987 79999999999999988777644
No 15
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=46.97 E-value=18 Score=25.73 Aligned_cols=27 Identities=30% Similarity=0.281 Sum_probs=23.3
Q ss_pred CCchHHHHHHHHhhcCCCHHHHHHHHhhc
Q psy4492 38 KQKVPLIKEIKGLLEGMNLVQAKKFVESI 66 (96)
Q Consensus 38 ~kKi~vIK~VR~i~t~LgLkEAK~lVe~~ 66 (96)
-.++..|+.+|++ |++|.|.|.+++..
T Consensus 50 ~~~l~~i~~l~~~--g~~l~~i~~~~~~~ 76 (278)
T 1r8e_A 50 LIHLDLIKSLKYI--GTPLEEMKKAQDLE 76 (278)
T ss_dssp GGHHHHHHHHHHT--TCCHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHC--CCCHHHHHHHHHhC
Confidence 3688999999984 99999999999765
No 16
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=45.55 E-value=11 Score=23.28 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=28.1
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhhcChhhhhcC
Q psy4492 39 QKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDV 74 (96)
Q Consensus 39 kKi~vIK~VR~i~t~LgLkEAK~lVe~~P~~iKe~v 74 (96)
+|-.+|+.|.+- ++|.-++++..|+.+-..|.+.+
T Consensus 2 ~k~eli~~ia~~-~~ls~~~~~~~l~~~~~~i~~~L 36 (90)
T 2o97_B 2 NKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESL 36 (90)
T ss_dssp BHHHHHHHHHHT-TC-CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH
Confidence 356889999986 79999999999999887776644
No 17
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=45.45 E-value=12 Score=23.29 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=29.1
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhhcChhhhhcC
Q psy4492 39 QKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDV 74 (96)
Q Consensus 39 kKi~vIK~VR~i~t~LgLkEAK~lVe~~P~~iKe~v 74 (96)
+|-.+|+.|.+- ++|.-++++..|+.+-..|.+.+
T Consensus 2 ~k~eli~~ia~~-~~ls~~~~~~~l~~~~~~i~~~L 36 (94)
T 1p71_A 2 NKGELVDAVAEK-ASVTKKQADAVLTAALETIIEAV 36 (94)
T ss_dssp BHHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH
Confidence 356889999986 79999999999999887776644
No 18
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=45.00 E-value=13 Score=23.59 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=29.3
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhhcChhhhhcC
Q psy4492 39 QKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDV 74 (96)
Q Consensus 39 kKi~vIK~VR~i~t~LgLkEAK~lVe~~P~~iKe~v 74 (96)
+|-.+|+.|.+- ++|.-++++.+|+.+-..|.+.+
T Consensus 2 tk~eLi~~ia~~-~~lsk~~~~~~l~~~~~~i~~~L 36 (99)
T 3c4i_A 2 NKAELIDVLTQK-LGSDRRQATAAVENVVDTIVRAV 36 (99)
T ss_dssp BHHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH
Confidence 366889999986 79999999999999988777654
No 19
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=42.08 E-value=27 Score=23.47 Aligned_cols=25 Identities=4% Similarity=0.276 Sum_probs=21.3
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhh
Q psy4492 39 QKVPLIKEIKGLLEGMNLVQAKKFVES 65 (96)
Q Consensus 39 kKi~vIK~VR~i~t~LgLkEAK~lVe~ 65 (96)
..+..|+.+|.. |++|.+.|.+++.
T Consensus 47 ~~l~~I~~lr~~--G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 47 RWILFTRQMRRA--GLSIEALIDYLAL 71 (142)
T ss_dssp HHHHHHHHHHHT--TCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence 567888888874 9999999999974
No 20
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=41.46 E-value=16 Score=23.07 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=29.5
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhhcChhhhhcC
Q psy4492 39 QKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDV 74 (96)
Q Consensus 39 kKi~vIK~VR~i~t~LgLkEAK~lVe~~P~~iKe~v 74 (96)
+|-.+|+.|.+- ++|.-++++..|+.+-..|.+.+
T Consensus 4 ~k~eli~~ia~~-~~ls~~~~~~vl~~~~~~i~~~L 38 (99)
T 1owf_A 4 TKAEMSEYLFDK-LGLSKRDAKELVELFFEEIRRAL 38 (99)
T ss_dssp CHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH
Confidence 466899999986 79999999999999988777654
No 21
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=39.20 E-value=40 Score=22.65 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=21.3
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhh
Q psy4492 39 QKVPLIKEIKGLLEGMNLVQAKKFVES 65 (96)
Q Consensus 39 kKi~vIK~VR~i~t~LgLkEAK~lVe~ 65 (96)
.++..|+.+|.. |++|.+.+.+++.
T Consensus 61 ~~l~~I~~lr~~--G~sL~eIk~~l~~ 85 (148)
T 3gpv_A 61 KYLEMILCLKNT--GMPIQKIKQFIDW 85 (148)
T ss_dssp HHHHHHHHHHTT--TCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHh
Confidence 577888888884 9999999999984
No 22
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=37.58 E-value=34 Score=23.30 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=21.2
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhhc
Q psy4492 39 QKVPLIKEIKGLLEGMNLVQAKKFVESI 66 (96)
Q Consensus 39 kKi~vIK~VR~i~t~LgLkEAK~lVe~~ 66 (96)
.++..|+.+|.+ |++|.+.+.+++..
T Consensus 55 ~~l~~I~~lr~~--G~sl~eI~~~l~~~ 80 (154)
T 2zhg_A 55 RYVAIIKIAQRI--GIPLATIGEAFGVL 80 (154)
T ss_dssp HHHHHHHHHHHH--TCCHHHHHHHHCC-
T ss_pred HHHHHHHHHHHC--CCCHHHHHHHHHhc
Confidence 567788888884 99999999999854
No 23
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=36.87 E-value=11 Score=23.92 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=30.3
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhhcChhhhhcCC
Q psy4492 39 QKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDVT 75 (96)
Q Consensus 39 kKi~vIK~VR~i~t~LgLkEAK~lVe~~P~~iKe~v~ 75 (96)
+|-.+|+.|.+- ++|.-++++..|+.+-..|.+.+.
T Consensus 2 tk~eLi~~ia~~-~~lsk~~~~~~l~~~~~~i~~~L~ 37 (99)
T 1exe_A 2 NKTELIKAIAQD-TGLTQVSVSKMLASFEKIITETVA 37 (99)
T ss_dssp CTTHHHHHHHHH-HCSCCTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHH
Confidence 356899999986 799999999999999888876543
No 24
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=34.13 E-value=19 Score=21.32 Aligned_cols=16 Identities=44% Similarity=0.432 Sum_probs=13.9
Q ss_pred HHHHHHHHHhCCcEEE
Q psy4492 79 AEALKASLAKVGGEVS 94 (96)
Q Consensus 79 Ae~ik~kle~aGa~ve 94 (96)
+++|++.|+.+|.+|+
T Consensus 19 ~~~I~~il~aaGveve 34 (58)
T 3a1y_A 19 EENLKAVLQAAGVEPE 34 (58)
T ss_dssp HHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCCcc
Confidence 6789999999998874
No 25
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=32.27 E-value=37 Score=22.40 Aligned_cols=25 Identities=20% Similarity=0.519 Sum_probs=20.5
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhh
Q psy4492 39 QKVPLIKEIKGLLEGMNLVQAKKFVES 65 (96)
Q Consensus 39 kKi~vIK~VR~i~t~LgLkEAK~lVe~ 65 (96)
.++..|+.+|.. |++|.|.+.+++.
T Consensus 45 ~~l~~I~~lr~~--G~sl~eI~~~l~~ 69 (135)
T 1q06_A 45 NELTLLRQARQV--GFNLEESGELVNL 69 (135)
T ss_dssp HHHHHHHHHHHT--TCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC--CCCHHHHHHHHHh
Confidence 467778888874 9999999999964
No 26
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=31.86 E-value=28 Score=21.54 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=28.2
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhhcChhhhhcC
Q psy4492 39 QKVPLIKEIKGLLEGMNLVQAKKFVESIPAVVKTDV 74 (96)
Q Consensus 39 kKi~vIK~VR~i~t~LgLkEAK~lVe~~P~~iKe~v 74 (96)
+|-.+|+.|.+-.++|.-++++..|+.+-..|.+.+
T Consensus 2 tk~eli~~ia~~~~~ls~~~~~~~l~~~~~~i~~~L 37 (94)
T 1owf_B 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTL 37 (94)
T ss_dssp BHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 356789999874249999999999999887776643
No 27
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=31.76 E-value=21 Score=22.93 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=28.8
Q ss_pred CchHHHHHHH-----HhhcCCCHHHHHHHHhhcChhhhhcC
Q psy4492 39 QKVPLIKEIK-----GLLEGMNLVQAKKFVESIPAVVKTDV 74 (96)
Q Consensus 39 kKi~vIK~VR-----~i~t~LgLkEAK~lVe~~P~~iKe~v 74 (96)
+|-.+|+.|. +- ++|.-++++..|+.+-..|.+.+
T Consensus 10 tk~eLi~~ia~~~~~~~-~~lsk~~~~~vl~~~~~~i~~~L 49 (108)
T 2np2_A 10 TKSDIVDQIALNIKNNN-LKLEKKYIRLVIDAFFEELKSNL 49 (108)
T ss_dssp EHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhhhhhh-cCCCHHHHHHHHHHHHHHHHHHH
Confidence 4678999998 75 79999999999999887776543
No 28
>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB: 3m6k_A* 3m7d_A 3m7g_A
Probab=31.66 E-value=52 Score=25.72 Aligned_cols=46 Identities=13% Similarity=0.351 Sum_probs=36.4
Q ss_pred HHHHHhhcCCCHHHHHHHHhhcChhhhh-cCCHHHHHHHHHHHHhCC
Q psy4492 45 KEIKGLLEGMNLVQAKKFVESIPAVVKT-DVTKEEAEALKASLAKVG 90 (96)
Q Consensus 45 K~VR~i~t~LgLkEAK~lVe~~P~~iKe-~v~keeAe~ik~kle~aG 90 (96)
+.++.+.++|.|.|||..--++-..|-+ |+|.+.|+++...|+...
T Consensus 332 rtlkdvcpdltleeaksvnrtlatlidehglspdaadeliehfesia 378 (380)
T 3m6z_A 332 RTLKDVCPDLTLEEAKSVNRTLATLIDEHGLSPDAADELIEHFESIA 378 (380)
T ss_dssp HHHHHHCTTCCHHHHHHHCHHHHHHHHTTCCCHHHHHHHHHHHC---
T ss_pred hHhhhcCCcccHHHHHhhhHHHHHHHHhcCCCcchHHHHHHHHHhhc
Confidence 5677778999999999887777666654 899999999999998654
No 29
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=31.60 E-value=61 Score=20.33 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=20.7
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhh
Q psy4492 39 QKVPLIKEIKGLLEGMNLVQAKKFVES 65 (96)
Q Consensus 39 kKi~vIK~VR~i~t~LgLkEAK~lVe~ 65 (96)
..+..|+.+|+. |++|.+.+.+++.
T Consensus 46 ~~l~~I~~lr~~--G~sl~~I~~~l~~ 70 (108)
T 2vz4_A 46 DRLQQILFYREL--GFPLDEVAALLDD 70 (108)
T ss_dssp HHHHHHHHHHHT--TCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHC--CCCHHHHHHHHhC
Confidence 467778888874 9999999999975
No 30
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=29.16 E-value=36 Score=20.74 Aligned_cols=19 Identities=21% Similarity=0.400 Sum_probs=15.1
Q ss_pred hhcCCHHHHHHHHHHHHhC
Q psy4492 71 KTDVTKEEAEALKASLAKV 89 (96)
Q Consensus 71 Ke~v~keeAe~ik~kle~a 89 (96)
|+.+|.+.+++|.+.|-++
T Consensus 2 kd~lt~eq~~aILkaLdea 20 (57)
T 3fxd_A 2 KDQLSDEQKETILKALNDA 20 (57)
T ss_dssp --CCCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 7789999999999998764
No 31
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=28.38 E-value=55 Score=22.00 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=22.4
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhhcC
Q psy4492 39 QKVPLIKEIKGLLEGMNLVQAKKFVESIP 67 (96)
Q Consensus 39 kKi~vIK~VR~i~t~LgLkEAK~lVe~~P 67 (96)
..+..|+.+|.. |++|.+.+.+++...
T Consensus 49 ~~l~~I~~lr~~--G~sl~~I~~~l~~~~ 75 (146)
T 3hh0_A 49 YVLQQIQSFKHL--GFSLGEIQNIILQRD 75 (146)
T ss_dssp HHHHHHHHHHHT--TCCHHHHHHHHTSSE
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHccC
Confidence 567888888874 999999999998654
No 32
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=26.97 E-value=53 Score=20.60 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=20.7
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhhc
Q psy4492 39 QKVPLIKEIKGLLEGMNLVQAKKFVESI 66 (96)
Q Consensus 39 kKi~vIK~VR~i~t~LgLkEAK~lVe~~ 66 (96)
..+..|+.+|.. |++|.+.+.+++..
T Consensus 47 ~~l~~I~~l~~~--G~~l~~I~~~l~~~ 72 (109)
T 1r8d_A 47 ERLQQILFFKEI--GFRLDEIKEMLDHP 72 (109)
T ss_dssp HHHHHHHHHHHT--TCCHHHHHHHHHCT
T ss_pred HHHHHHHHHHHC--CCCHHHHHHHHhCC
Confidence 456677777774 99999999999754
No 33
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=26.06 E-value=35 Score=24.59 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=39.6
Q ss_pred EEEEeeCCCCCchHHHHHH-HH-h-hcCCCHHHHHHHHh--h----------cChhhhhcCCHHHHHHHHHHHHhCCcEE
Q psy4492 29 TVKLVKYDDKQKVPLIKEI-KG-L-LEGMNLVQAKKFVE--S----------IPAVVKTDVTKEEAEALKASLAKVGGEV 93 (96)
Q Consensus 29 ~V~L~~~~~~kKi~vIK~V-R~-i-~t~LgLkEAK~lVe--~----------~P~~iKe~v~keeAe~ik~kle~aGa~v 93 (96)
.|+|.+-++ -++.-+..| +. + -.|+.|+ .| + . .-..|++|++.+.|.+|.+.+.+.+-+|
T Consensus 47 ~i~l~a~~d-~kl~qv~DiL~~kl~KRgid~k---~l-d~~~~~~~sG~~vrq~~~lk~GI~~e~AKkIvK~IKdsklKV 121 (163)
T 1in0_A 47 TIKITTESD-FQLEQLIEILIGSCIKRGIEHS---SL-DIPAESEHHGKLYSKEIKLKQGIETEMAKKITKLVKDSKIKV 121 (163)
T ss_dssp EEEEEESCH-HHHHHHHHHHHHHHHHTTCCGG---GE-ECCSSCEEETTEEEEEEEECCSCCHHHHHHHHHHHHHHTCSE
T ss_pred EEEEEeCCH-HHHHHHHHHHHHHHHHcCCCch---hc-ccCCCccccCCEEEEEEEeecccCHHHHHHHHHHHHhcCCcc
Confidence 467776553 566654433 31 1 1355554 22 2 1 1246899999999999999999998876
Q ss_pred E
Q psy4492 94 S 94 (96)
Q Consensus 94 e 94 (96)
.
T Consensus 122 q 122 (163)
T 1in0_A 122 Q 122 (163)
T ss_dssp E
T ss_pred e
Confidence 4
No 34
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=25.36 E-value=26 Score=21.49 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=13.9
Q ss_pred HHHHHHHHHhCCcEEE
Q psy4492 79 AEALKASLAKVGGEVS 94 (96)
Q Consensus 79 Ae~ik~kle~aGa~ve 94 (96)
+++|++.|+.+|.+|+
T Consensus 25 a~~I~~il~AaGveve 40 (69)
T 2lbf_A 25 EDKINALIKAAGVNVE 40 (69)
T ss_dssp HHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHcCCCcc
Confidence 6789999999998874
No 35
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=25.36 E-value=55 Score=23.96 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=22.8
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhhcC
Q psy4492 39 QKVPLIKEIKGLLEGMNLVQAKKFVESIP 67 (96)
Q Consensus 39 kKi~vIK~VR~i~t~LgLkEAK~lVe~~P 67 (96)
.++..|+.+|++ |++|.+.|.+++..+
T Consensus 48 ~~L~~I~~lr~~--G~sL~eIk~~l~~~~ 74 (249)
T 3qao_A 48 DKLQQILFFKEL--DFPLKKIQQILDDPL 74 (249)
T ss_dssp HHHHHHHHHHHT--TCCHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHC--CCCHHHHHHHhccCc
Confidence 578888999884 999999999998644
No 36
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=25.34 E-value=30 Score=21.37 Aligned_cols=16 Identities=38% Similarity=0.430 Sum_probs=14.0
Q ss_pred HHHHHHHHHhCCcEEE
Q psy4492 79 AEALKASLAKVGGEVS 94 (96)
Q Consensus 79 Ae~ik~kle~aGa~ve 94 (96)
+++|++.|+.+|.+|+
T Consensus 21 a~~I~~il~aaGvevd 36 (70)
T 2lbf_B 21 AKDIKKILDSVGIEAD 36 (70)
T ss_dssp HHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHcCCCcc
Confidence 6789999999999875
No 37
>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A
Probab=24.97 E-value=36 Score=20.35 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=15.4
Q ss_pred hhhhcCCHHHHHHHHHHHHhCCcEE
Q psy4492 69 VVKTDVTKEEAEALKASLAKVGGEV 93 (96)
Q Consensus 69 ~iKe~v~keeAe~ik~kle~aGa~v 93 (96)
++|++++.++.+..+..+...|+++
T Consensus 8 ~lk~~~~~~~~~~~~~~~~~~gg~i 32 (76)
T 1v5i_B 8 IFKNDVSEDKIRETKDEVIAEGGTI 32 (76)
T ss_dssp EECTTCCHHHHHHHHHHHHHHTCCC
T ss_pred EECCCCCHHHHHHHHHHHHhhCCce
Confidence 4566666666666666666666554
No 38
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=24.53 E-value=78 Score=18.81 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=22.1
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhh
Q psy4492 39 QKVPLIKEIKGLLEGMNLVQAKKFVES 65 (96)
Q Consensus 39 kKi~vIK~VR~i~t~LgLkEAK~lVe~ 65 (96)
..+.+|++-|.+ ||.|.|-+.|+..
T Consensus 14 ewl~LI~~Ak~l--GlsleEIrefL~l 38 (57)
T 1b0n_B 14 EWVELMVEAKEA--NISPEEIRKYLLL 38 (57)
T ss_dssp HHHHHHHHHHHT--TCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence 688999999995 9999999999864
No 39
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=24.03 E-value=1.1e+02 Score=22.76 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=35.8
Q ss_pred CCchHHHHHHHHhhcCCCHHHHHHHHhhcChhh---hhcCCHHHHHHHHHHHHhCCcEEEe
Q psy4492 38 KQKVPLIKEIKGLLEGMNLVQAKKFVESIPAVV---KTDVTKEEAEALKASLAKVGGEVSV 95 (96)
Q Consensus 38 ~kKi~vIK~VR~i~t~LgLkEAK~lVe~~P~~i---Ke~v~keeAe~ik~kle~aGa~vei 95 (96)
.+|..++.++|+.+ ++.+.++ -.|++-.+-.++++.|.+.|+.+.+
T Consensus 6 e~K~~~v~el~~~l------------~~~~~v~v~~~~gl~~~ql~~lR~~lr~~g~~~~v 54 (284)
T 3a1y_G 6 EWKKKEVEELAKLI------------KSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRV 54 (284)
T ss_dssp CCTTTHHHHHHHHH------------TTCSEEEEEECTTCCHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHH------------HhCCEEEEEEcCCCCHHHHHHHHHHHHhcCcEEEE
Confidence 36777777777653 6666555 6799999999999999999988654
No 40
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=23.30 E-value=70 Score=17.74 Aligned_cols=20 Identities=15% Similarity=0.388 Sum_probs=15.0
Q ss_pred HHHHhhcCCCHHHHHHHHhhc
Q psy4492 46 EIKGLLEGMNLVQAKKFVESI 66 (96)
Q Consensus 46 ~VR~i~t~LgLkEAK~lVe~~ 66 (96)
.+-+| .+|.|.|+.+||+.+
T Consensus 6 iie~i-~~lTvlE~~eLvk~l 25 (40)
T 1dd4_C 6 IIEAI-EKLTVSELAELVKKL 25 (40)
T ss_dssp HHHHH-TTSCHHHHHHHHHHH
T ss_pred HHHHH-HhCcHHHHHHHHHHH
Confidence 34455 688999999998754
No 41
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=20.77 E-value=66 Score=19.05 Aligned_cols=20 Identities=35% Similarity=0.366 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHHHhCCcEEE
Q psy4492 75 TKEEAEALKASLAKVGGEVS 94 (96)
Q Consensus 75 ~keeAe~ik~kle~aGa~ve 94 (96)
+++.|+.+..+|...|-.+.
T Consensus 19 ~~~~A~~l~~~L~~~G~~a~ 38 (81)
T 1uta_A 19 GAEQAETVRAQLAFEGFDSK 38 (81)
T ss_dssp CHHHHHHHHHHHHHHTCCEE
T ss_pred CHHHHHHHHHHHHhCCCCeE
Confidence 46777777777777665443
No 42
>2a4x_A Mitomycin-binding protein; ALFA/beta protein, mitomycin C-binding protein, bleomycin A2, antimicrobial protein; HET: BLM; 1.40A {Streptomyces caespitosus} SCOP: d.32.1.2 PDB: 2a4w_A* 1kmz_A 1kll_A*
Probab=20.66 E-value=85 Score=19.08 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHhCCcEEE
Q psy4492 75 TKEEAEALKASLAKVGGEVS 94 (96)
Q Consensus 75 ~keeAe~ik~kle~aGa~ve 94 (96)
+.++.+++.++|.+.|+++.
T Consensus 81 ~~~dv~~~~~~l~~~G~~~~ 100 (138)
T 2a4x_A 81 DTASVDKKYAELVDAGYEGH 100 (138)
T ss_dssp SHHHHHHHHHHHHHTTCCEE
T ss_pred CHHHHHHHHHHHHHCCCcee
Confidence 67899999999999999874
No 43
>1u7i_A Hypothetical protein; structural genomics, PA1358, PSI, PROT structure initiative; HET: MSE; 1.40A {Pseudomonas aeruginosa} SCOP: d.32.1.7
Probab=20.64 E-value=87 Score=19.56 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHhCCcEEEe
Q psy4492 75 TKEEAEALKASLAKVGGEVSV 95 (96)
Q Consensus 75 ~keeAe~ik~kle~aGa~vei 95 (96)
+.+|.+.+-++|. +|++|..
T Consensus 88 d~~evd~~~~~l~-~Gg~v~~ 107 (136)
T 1u7i_A 88 SNAQIERLAEALS-DGGKALM 107 (136)
T ss_dssp CHHHHHHHHHHHH-TTSEEEE
T ss_pred CHHHHHHHHHHHH-cCCEEec
Confidence 6788999999999 9999864
No 44
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=20.36 E-value=72 Score=23.19 Aligned_cols=27 Identities=7% Similarity=0.340 Sum_probs=21.0
Q ss_pred CchHHHHHHHHhhcCCCHHHHHHHHhhc
Q psy4492 39 QKVPLIKEIKGLLEGMNLVQAKKFVESI 66 (96)
Q Consensus 39 kKi~vIK~VR~i~t~LgLkEAK~lVe~~ 66 (96)
.++..|+.+|.. .|++|.+.|++++..
T Consensus 45 ~~L~~I~~lr~~-~G~sL~eIk~~l~~~ 71 (222)
T 2dg6_A 45 RRLRLVRALIQV-GKVPVATAREVLGHV 71 (222)
T ss_dssp HHHHHHHHHHHT-TCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHhh
Confidence 456777777774 499999999999864
No 45
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=20.31 E-value=70 Score=21.83 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=12.8
Q ss_pred HHHHHHHHhCCcEEEe
Q psy4492 80 EALKASLAKVGGEVSV 95 (96)
Q Consensus 80 e~ik~kle~aGa~vei 95 (96)
...++++|++|++|++
T Consensus 131 k~A~ekIeaAGG~v~~ 146 (148)
T 2zkr_l 131 RRAEEKIKSVGGACVL 146 (148)
T ss_dssp HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHcCCEEEe
Confidence 3466789999999976
Done!